Aberystwyth University Data Catalogue

2018

Evolutionary genomics of anthroponosis in Cryptosporidium (2018) Prifysgol Aberystwyth | Aberystwyth University
Description Genomes of cryptosporidium species used in the linked paper but embargoed on NCBI. Note that other genomes are already available via NCBI.
Creator(s) Swain, Martin; Pachebat, Justin
Department(s) Department of Biological, Environmental and Rural Sciences
Managed by Department of Biological, Environmental and Rural Sciences
Document(s)
Genome1.fasta (9184KB, application/octet-stream)
Licence: CC BY
Genome2.fasta (8731KB, application/octet-stream)
Licence: CC BY
Genome3.fasta (8827KB, application/octet-stream)
Licence: CC BY
Genome4.fasta (9325KB, application/octet-stream)
Licence: CC BY
Genome5.fasta (9032KB, application/octet-stream)
Licence: CC BY
Genome6.fasta (9433KB, application/octet-stream)
Licence: CC BY
Genome7.fasta (9403KB, application/octet-stream)
Licence: CC BY
Genome8.fasta (9309KB, application/octet-stream)
Licence: CC BY
Genome9.fasta (9041KB, application/octet-stream)
Licence: CC BY
Genome10.fasta (9045KB, application/octet-stream)
Licence: CC BY
Genome11.fasta (9273KB, application/octet-stream)
Licence: CC BY
Lolium perenne BAC-based physical maps co-ordinates (Supplementary Table 4) (2018) Prifysgol Aberystwyth | Aberystwyth University
Description Clone co-ordinates of BAC-based physical maps assembled using FPC and LTC softwares from HICF data generated from Lolium perenne BAC libraries derived from genotype p226/135/16.
Creator(s) Armstead, Ian
Department(s) Department of Biological, Environmental and Rural Sciences
Managed by Department of Biological, Environmental and Rural Sciences
Document(s)
Supplementary_Table_S4.xlsx (68760KB, application/vnd.openxmlformats-officedocument.spreadsheetml.sheet)
Licence: CC BY
Lolium perenne BAC-end sequences (2018) Prifysgol Aberystwyth | Aberystwyth University
Description BAC-end sequences for HindIII and BstY1 Lolium perenne (perennial ryegrass) BAC libraries developed from genotype p226/135/16
Creator(s) Armstead, Ian
Department(s) Department of Biological, Environmental and Rural Sciences
Managed by Department of Biological, Environmental and Rural Sciences
Document(s)
p226_135_16_BES.fasta (230463KB, application/octet-stream)
Licence: CC BY
LpBAC5000 (2018) Prifysgol Aberystwyth | Aberystwyth University
Description BAC DNA sequence contigs from the physical map minimum-tiling-path (MTP) for Lolium perenne genotype p226/135/16
Creator(s) Armstead, Ian
Department(s) Department of Biological, Environmental and Rural Sciences
Managed by Department of Biological, Environmental and Rural Sciences
Document(s)
LpBAC5000.fasta (2707205KB, application/octet-stream)
Licence: CC BY
Miscanthus sinensis direct sown seed phenotyping data. (2018) Prifysgol Aberystwyth | Aberystwyth University
Description Tiller counts, tiller heights, tiller diameters, leaf counts and senescence scores - on a multi location direct sowing Miscanthus trial.
Creator(s) Awty-Carroll, Danny; Ashman, Christopher Ross; Robson, Paul; Mos, Michal; Clifton-Brown, John
Department(s) Department of Biological, Environmental and Rural Sciences
Managed by Department of Biological, Environmental and Rural Sciences
Physical Data
Miscanthus sinensis direct sown seed phenotyping data. (Phenotyping)

2017

Analysis of wheat grain traits using X-ray micro computed tomography (2017) Prifysgol Aberystwyth | Aberystwyth University
Description This dataset is from an experiment ran at the National Plant Phenomics Centre, Wales. Using a new and novel CT analysis method which is linked on this record
Creator(s) Hughes, Nathan; Nobre Nibau, Candida; Doonan, John; Corke, Fiona; Sauze, Colin
Department(s) Department of Biological, Environmental and Rural Sciences; Department of Computer Science
Managed by Department of Biological, Environmental and Rural Sciences
Document(s)
Flat_images.zip (7684KB, multipart/x-zip)
Licence: CC BY
Data_Files.zip (467KB, multipart/x-zip)
Licence: CC BY
Post_processed_tifs.zip (437131KB, multipart/x-zip)
Licence: CC BY
Pre_processing_tifs.zip (21322549KB, multipart/x-zip)
Licence: CC BY
readme.MD (704Bytes, application/octet-stream)
Licence: CC BY
Descriptions_of_treatments.xlsx (17KB, application/vnd.openxmlformats-officedocument.spreadsheetml.sheet)
Licence: CC BY
Miscanthus sinensis germination images (2017) Prifysgol Aberystwyth | Aberystwyth University
Description Images of germination in Miscanthus sinensis seed, under a range of treatments. A set of ~5,000 Miscanthus sinensis seed germinating over 11 days. Photographed using a (Nikon D90) DSLR at a resolution of 4,288 x 2,848 pixels. Each seed image is ~282 x 341 pixels. The seed were sterilised with a low concentration bleach solution (0.5% Sodium Hypochlorite). The seed are from an experiment which treated them with standard plant hormones (gibberellic acid (from 0.15 to 750 ppm), 1-naphthaleneacetic acid (from 0.01 to 200 ppm), epibrassinolide (from 0.001 to 2 ppm1) and abscisic acid (from 0.05 to 60 ppm)), or had induced water stresses (NaCl and polyethylene glycol (8000 and 4000 ppm respectively) producing water potentials of up to -4.1 MPa) or they were stratified. These treatments produce a diverse and challenging range of germination phenotypes with which to test image analysis. All images were scored by one person for consistency and the human score of this image set was the only reference point to which the computer score was compared. The time of germination and mold were scored with 9999 used for seed that did not germinate or go moldy. Stem and root measurements were also added on the 11th day.
Creator(s) Awty-Carroll, Danny
Department(s) Department of Biological, Environmental and Rural Sciences
Managed by Department of Biological, Environmental and Rural Sciences
Document(s)
Rhododendron data on regeneration of communities in Snowdonia (2017) Prifysgol Aberystwyth | Aberystwyth University
Description Data to support publication, including community data, chemicals etc.
Creator(s) Jones, Dylan; Jones, Gruffydd Lloyd; Winters, Anne; Scullion, John
Department(s) Department of Biological, Environmental and Rural Sciences
Managed by Department of Biological, Environmental and Rural Sciences
Document(s)
Gruffydd_Jones_Rhodo_data_7thDecember2017.xlsx (15KB, application/vnd.openxmlformats-officedocument.spreadsheetml.sheet)
Licence: CC BY-NC

2016

Visual attention and cognition data set (2016) Prifysgol Aberystwyth | Aberystwyth University
Description Visual attention data for all animals (columns A-E); data are the number of correct responses during each session (Sessions 1-4). Cognition data are the number of trails to reach the learning criterion during the 3 phases of the two-choice discrimination reversal task (columns G-J). The maximum number of trials within each phase of the task was set at 100.
Creator(s) McBride, Sebastian
Department(s) Department of Biological, Environmental and Rural Sciences
Managed by Department of Biological, Environmental and Rural Sciences
Document(s)
Data.xlsx (13KB, application/vnd.openxmlformats-officedocument.spreadsheetml.sheet)
Licence: CC BY

2013

Trifolium repens isolate TrPPO1 polyphenol oxidase (PPO) gene, partial cds (2013) Prifysgol Aberystwyth | Aberystwyth University
Creator(s) Webb, Kathleen; Cookson, Alan; Allison, Gordon; Winters, Anne
Department(s) Department of Biological, Environmental and Rural Sciences
Managed by Department of Biological, Environmental and Rural Sciences
Document(s)
Trifolium repens isolate TrPPO2 polyphenol oxidase (PPO) gene, partial cds (2013) Prifysgol Aberystwyth | Aberystwyth University
Creator(s) Webb, Kathleen; Cookson, Alan; Allison, Gordon; Winters, Anne
Department(s) Department of Biological, Environmental and Rural Sciences
Managed by Department of Biological, Environmental and Rural Sciences
Document(s)