Rule 132: (2, lift 352.1) amino_acid_ratio_c <= 0.5 amino_acids_l > 64 amino_acid_pair_ratio_ix > 0 amino_acid_pairs_kf > 0 -> class 'RNDfamily' [0.750] Evaluation on test data (712 items): Test Accuracy: 0/0 (0.00%) Test Frequency class 'RNDfamily': 2/712 (1.97%) Test Significance: dev(0.00) ; prob(1.000000E+00) Application to new data (2167 items): ecoli487 - 7,0,0 Miscellaneous Some information, but not classifiable Not classified (included putative assignments) 'b0496' 'putative oxidoreductase' ecoli1175 - 0,0,0 Open reading frames Unknown proteins, no known homologs Unknown function 'b1202' 'orf' ecoli1940 - 7,0,0 Miscellaneous Some information, but not classifiable Not classified (included putative assignments) 'b1978' 'paral putative factor(2nd module)' ecoli1465 - 1 Cell processes 'yddC' 'redox cofactor for pyrroloquinoline quinone synthesis (cryptic in K-12)' ecoli1481 - 0,0,0 Open reading frames Unknown proteins, no known homologs Unknown function 'ydeK' 'orf' Frequency rule on new data: 5/2167 (0.23%) Evaluation on training data (939 items): ecoli453 1,5,33 Cell processes Transport/binding proteins RNDfamily 'acrB' 'RND family of transport protein acridine efflux pump(2nd module)' ecoli2035 1,5,33 Cell processes Transport/binding proteins RNDfamily 'b2076' 'RND family of transport protein paral putative outer membrane receptor' Training Accuracy: 2/2 (100.00%) Training Frequency class 'RNDfamily': 2/939 (0.21%) Training Significance: dev(30.61) ; prob(4.536582E-06) Evaluation on validation data (471 items): ecoli3196 1,5,33 Cell processes Transport/binding proteins RNDfamily 'acrF' 'RND family of transport protein acriflavin resistance protein F multidrug efflux (?encodes lipoprotein with signal peptide; osmotcially remedial envelope defect)' Validation Accuracy: 1/1 (100.00%) Validation Frequency class 'RNDfamily': 1/471 (0.21%) Validation Significance: dev(21.68) ; prob(2.123142E-03) ------------------ Rule 142: (6, lift 31.6) ecoli_hydro <= 0.322 amino_acid_ratio_c <= 0.5 amino_acid_ratio_k <= 6.5 amino_acid_pair_ratio_el <= 4.3 amino_acid_pair_ratio_gf <= 5.7 amino_acid_pair_ratio_gk <= 7.6 amino_acid_pair_ratio_il <= 9.9 amino_acid_pair_ratio_kn <= 4.5 amino_acid_pair_ratio_nx <= 1.5 amino_acid_pair_ratio_wn <= 2.6 amino_acid_pairs_cs <= 0 amino_acid_pairs_ha <= 1 amino_acid_pairs_lr > 0 amino_acid_pairs_qp <= 1 amino_acid_pairs_wh <= 0 amino_acid_pairs_wq <= 2 amino_acid_pairs_xf <= 0 -> class 'Surface structures' [0.875] Evaluation on test data (712 items): ecoli2477 - 1,3,1 Cell processes Folding and ushering proteins Chaperones 'hscA' 'heat shock protein chaperone member of Hsp70 protein family(2nd module)' ecoli3891 - 3,2,14 Metabolism of small molecules Biosynthesis of cofactors, carriers Thiamin 'thiE' 'thiamin biosynthesis thiazole moiety' ecoli4135 - 3,7,2 Metabolism of small molecules Nucleotide biosynthesis Pyrimidine ribonucleotide biosynthesis 'pyrB' 'aspartate carbamoyltransferase catalytic subunit(1st module)' ecoli222 4,1,5 Structural elements Cell envelop Surface structures 'fhiA' 'flagellar biosynthesis paral putative transport protein' ecoli1012 4,1,5 Structural elements Cell envelop Surface structures 'csgE' 'curli production assembly/transport component 2nd curli operon' ecoli3308 - 3,4,3 Metabolism of small molecules Degradation of small molecules Carbon compounds 'gph' 'phosphoglycolate phosphatase' ecoli3165 - 2,1,4 Macromolecule metabolism Macromolecule degradation Degradation of proteins, peptides, glyco 'hhoB' 'periplasmic serine endoprotease(2nd module)' ecoli3244 - 4,2,2 Structural elements Ribosome constituents Ribosomal proteins - synthesis, modificationRiboso 'rpsJ' '30S ribosomal subunit protein S10' Test Accuracy: 2/8 (25.00%) Test Frequency class 'Surface structures': 22/712 (3.09%) Test Significance: dev(3.58) ; prob(2.361392E-02) Application to new data (2167 items): ecoli2593 - 0,0,0 Open reading frames Unknown proteins, no known homologs Unknown function 'b2647' 'orf' ecoli1377 - 0,0,0 Open reading frames Unknown proteins, no known homologs Unknown function 'ydbC' 'orf' ecoli771 - 7,0,0 Miscellaneous Some information, but not classifiable Not classified (included putative assignments) 'b0795' 'paral putative membrane protein' ecoli3977 - 0,0,0 Open reading frames Unknown proteins, no known homologs Unknown function 'yjcS' 'orf' ecoli239 - 0,0,0 Open reading frames Unknown proteins, no known homologs Unknown function 'b0247' 'orf' ecoli3138 - 7,0,0 Miscellaneous Some information, but not classifiable Not classified (included putative assignments) 'yrbM' 'monofunctional biosynthetic peptidoglycan transglycosylase' ecoli4230 - 0,0,0 Open reading frames Unknown proteins, no known homologs Unknown function 'b4341' 'orf' ecoli1343 - 7,0,0 Miscellaneous Some information, but not classifiable Not classified (included putative assignments) 'b1372' 'putative membrane protein' ecoli2923 - 7,0,0 Miscellaneous Some information, but not classifiable Not classified (included putative assignments) 'b2989' 'paral putative S-transferase(1st module)' ecoli2590 - 0,0,0 Open reading frames Unknown proteins, no known homologs Unknown function 'b2644' 'orf' ecoli404 - 0,0,0 Open reading frames Unknown proteins, no known homologs Unknown function 'yajI' 'orf' ecoli3724 - 0,0,0 Open reading frames Unknown proteins, no known homologs Unknown function 'yigB' 'orf' ecoli384 - 0,0,0 Open reading frames Unknown proteins, no known homologs Unknown function 'b0392' 'orf' ecoli669 - 0,0,0 Open reading frames Unknown proteins, no known homologs Unknown function 'b0686' 'orf' ecoli4110 - 0,0,0 Open reading frames Unknown proteins, no known homologs Unknown function 'ytfM' 'orf' ecoli3766 - 0,0,0 Open reading frames Unknown proteins, no known homologs Unknown function 'yihE' 'orf' ecoli2462 - 7,0,0 Miscellaneous Some information, but not classifiable Not classified (included putative assignments) 'b2511' 'putative GTP-binding factor(1st module)' ecoli1298 - 0,0,0 Open reading frames Unknown proteins, no known homologs Unknown function 'b1327' 'orf' ecoli396 - 7,0,0 Miscellaneous Some information, but not classifiable Not classified (included putative assignments) 'yajB' 'putative glycoprotein' ecoli3146 - 7,0,0 Miscellaneous Some information, but not classifiable Not classified (included putative assignments) 'yhcD' 'paral putative outer membrane protein (2nd module)' ecoli3342 - 0,0,0 Open reading frames Unknown proteins, no known homologs Unknown function 'yhgJ' 'orf' ecoli3171 - 7,0,0 Miscellaneous Some information, but not classifiable Not classified (included putative assignments) 'yhcQ' 'paral putative membrane protein' ecoli1538 - 0,0,0 Open reading frames Unknown proteins, no known homologs Unknown function 'b1567' 'orf' ecoli1646 - 0,0,0 Open reading frames Unknown proteins, no known homologs Unknown function 'b1678' 'orf' ecoli609 - 7,0,0 Miscellaneous Some information, but not classifiable Not classified (included putative assignments) 'b0619' 'sensory kinase in two component regulatory system with DpiA(2nd module)' Frequency rule on new data: 25/2167 (1.15%) Evaluation on training data (939 items): ecoli1043 4,1,5 Structural elements Cell envelop Surface structures 'flgN' 'flagellar biosynthesis: belived to be export chaperone for FlgK and FlgL (flagellar hook associated proteins)' ecoli1049 4,1,5 Structural elements Cell envelop Surface structures 'flgE' 'flagellar biosynthesis hook protein(1st module)' ecoli1050 4,1,5 Structural elements Cell envelop Surface structures 'flgF' 'flagellar biosynthesis cell-proximal portion of basal-body rod(1st module)' ecoli1053 4,1,5 Structural elements Cell envelop Surface structures 'flgI' 'homolog of Salmonella P-ring of flagella basal body' ecoli1906 4,1,5 Structural elements Cell envelop Surface structures 'fliI' 'flagellum-specific ATP synthase(2nd module)' ecoli4205 4,1,5 Structural elements Cell envelop Surface structures 'fimC' 'periplasmic chaperone required for type 1 fimbriae' Training Accuracy: 6/6 (100.00%) Training Frequency class 'Surface structures': 26/939 (2.77%) Training Significance: dev(14.52) ; prob(4.506574E-10) Evaluation on validation data (471 items): ecoli1889 4,1,5 Structural elements Cell envelop Surface structures 'fliD' 'flagellar biosynthesis; filament capping protein; enables filament assembly' ecoli625 - 1,7,1 Cell processes Cell division Cell division 'mrdA' 'cell elongation e phase; peptidoglycan synthetase; penicillin-binding protein 2(2nd module)' ecoli1055 4,1,5 Structural elements Cell envelop Surface structures 'flgK' 'flagellar biosynthesis hook-filament junction protein 1 C-terminal involved in chaperone (probably FlgN) binding(2nd module)' Validation Accuracy: 2/3 (66.67%) Validation Frequency class 'Surface structures': 12/471 (2.55%) Validation Significance: dev(7.05) ; prob(1.897727E-03) ------------------ Rule 148: (3, lift 34.1) amino_acid_ratio_k > 6.5 amino_acid_pair_ratio_ca > 3 amino_acid_pairs_aw <= 0 amino_acid_pairs_rl > 2 -> class 'Transposon-related functions' [0.800] Evaluation on test data (712 items): ecoli266 5,1,4 Extrachromosomal Laterally acquirred elements Transposon-related functions 'insB_3' 'IS1 protein InsB' ecoli1501 - 1,4,3 Cell processes Protection responses Drug/analog sensitivity 'marR' 'multiple antibiotic resistance protein; repressor of marRAB operon' Test Accuracy: 1/2 (50.00%) Test Frequency class 'Transposon-related functions': 13/712 (1.83%) Test Significance: dev(5.09) ; prob(3.618348E-02) Application to new data (2167 items): ecoli2378 - 0,0,0 Open reading frames Unknown proteins, no known homologs Unknown function 'b2427' 'orf' Frequency rule on new data: 1/2167 (0.05%) Evaluation on training data (939 items): ecoli3368 5,1,4 Extrachromosomal Laterally acquirred elements Transposon-related functions 'insB_6' 'IS1 protein InsB' ecoli1861 5,1,4 Extrachromosomal Laterally acquirred elements Transposon-related functions 'insB_5' 'IS1 protein InsB' ecoli21 5,1,4 Extrachromosomal Laterally acquirred elements Transposon-related functions 'insB_1' 'IS1 protein InsB' Training Accuracy: 3/3 (100.00%) Training Frequency class 'Transposon-related functions': 22/939 (2.34%) Training Significance: dev(11.18) ; prob(1.286090E-05) Evaluation on validation data (471 items): ecoli3964 - 3,5,3 Metabolism of small molecules Energy metabolism, carbon Electron transport 'nrfA' 'nitrite reductase periplasmic cytochrome c(552):' ecoli962 5,1,4 Extrachromosomal Laterally acquirred elements Transposon-related functions 'insB_4' 'IS1 protein InsB' ecoli256 5,1,4 Extrachromosomal Laterally acquirred elements Transposon-related functions 'insB_2' 'IS1 protein InsB 2' Validation Accuracy: 2/3 (66.67%) Validation Frequency class 'Transposon-related functions': 14/471 (2.97%) Validation Significance: dev(6.50) ; prob(2.571762E-03) ------------------ Rule 147: (14/1, lift 37.3) ecoli_hydro <= 0.322 amino_acid_ratio_k <= 6.5 amino_acid_pair_ratio_ak <= 11.7 amino_acid_pair_ratio_gq <= 1.2 amino_acid_pair_ratio_kn > 4.5 amino_acid_pairs_ca <= 0 amino_acid_pairs_ch <= 0 amino_acid_pairs_hn <= 0 amino_acid_pairs_rk > 0 -> class 'Transposon-related functions' [0.875] Evaluation on test data (712 items): ecoli1989 5,1,4 Extrachromosomal Laterally acquirred elements Transposon-related functions 'yi52_7' 'IS5 protein' ecoli22 5,1,4 Extrachromosomal Laterally acquirred elements Transposon-related functions 'insA_1' 'IS1 protein InsA' ecoli48 - 3,2,5 Metabolism of small molecules Biosynthesis of cofactors, carriers Folic acid 'folA' 'dihydrofolate reductase type I; trimethoprim resistance' ecoli572 5,1,4 Extrachromosomal Laterally acquirred elements Transposon-related functions 'yi81_2' 'IS186 protein' ecoli2979 5,1,4 Extrachromosomal Laterally acquirred elements Transposon-related functions 'yi22_5' 'IS2 protein' ecoli1953 5,1,4 Extrachromosomal Laterally acquirred elements Transposon-related functions 'yi52_6' 'IS5 protein' ecoli632 - 2,2,1 Macromolecule metabolism Macromolecule synthesis, modification Amino acyl tRNA syn; tRNA modification 'leuS' 'leucine tRNA synthetase(1st module)' Test Accuracy: 5/7 (71.43%) Test Frequency class 'Transposon-related functions': 13/712 (1.83%) Test Significance: dev(13.75) ; prob(4.132583E-08) Application to new data (2167 items): ecoli2422 - 0,0,0 Open reading frames Unknown proteins, no known homologs Unknown function 'yffB' 'orf' ecoli1688 - 0,0,0 Open reading frames Unknown proteins, no known homologs Unknown function 'b1720' 'orf' ecoli1425 - 7,0,0 Miscellaneous Some information, but not classifiable Not classified (included putative assignments) 'b1454' 'paral putative S-transferase(1st module)' ecoli2902 - 7,0,0 Miscellaneous Some information, but not classifiable Not classified (included putative assignments) 'b2968' 'putative secretion pathway protein' ecoli2351 - 7,0,0 Miscellaneous Some information, but not classifiable Not classified (included putative assignments) 'b2394' 'putative transposase' ecoli2482 - 0,0,0 Open reading frames Unknown proteins, no known homologs Unknown function 'b2531' 'orf' ecoli3036 - 0,0,0 Open reading frames Unknown proteins, no known homologs Unknown function 'yhaH' 'orf' ecoli2083 - 0,0,0 Open reading frames Unknown proteins, no known homologs Unknown function 'yehS' 'orf' ecoli4254 - 7,0,0 Miscellaneous Some information, but not classifiable Not classified (included putative assignments) 'yjjQ' 'putative regulator' ecoli2347 - 0,0,0 Open reading frames Unknown proteins, no known homologs Unknown function 'b2390' 'orf' ecoli3498 - 0,0,0 Open reading frames Unknown proteins, no known homologs Unknown function 'yiaL' 'orf' ecoli876 - 0,0,0 Open reading frames Unknown proteins, no known homologs Unknown function 'ycaK' 'orf' ecoli1169 - 0,0,0 Open reading frames Unknown proteins, no known homologs Unknown function 'b1196' 'orf' ecoli1178 - 0,0,0 Open reading frames Unknown proteins, no known homologs Unknown function 'ychH' 'orf' ecoli3089 - 0,0,0 Open reading frames Unknown proteins, no known homologs Unknown function 'yhbT' 'orf' ecoli1172 - 7,0,0 Miscellaneous Some information, but not classifiable Not classified (included putative assignments) 'b1199' 'putative dihydroxyacetone kinase' ecoli1081 - 0,0,0 Open reading frames Unknown proteins, no known homologs Unknown function 'b1108' 'orf(1st module)' ecoli1548 - 0,0,0 Open reading frames Unknown proteins, no known homologs Unknown function 'b1578' 'orf' ecoli1938 - 7,0,0 Miscellaneous Some information, but not classifiable Not classified (included putative assignments) 'b1974' 'putative cytochrome' ecoli4174 - 7,0,0 Miscellaneous Some information, but not classifiable Not classified (included putative assignments) 'b4285' 'putative transposase' ecoli809 - 0,0,0 Open reading frames Unknown proteins, no known homologs Unknown function 'b0833' 'orf(2nd module)' ecoli1532 - 0,0,0 Open reading frames Unknown proteins, no known homologs Unknown function 'rem' 'orf' ecoli4162 - 7,0,0 Miscellaneous Some information, but not classifiable Not classified (included putative assignments) 'b4273' 'putative transposase' Frequency rule on new data: 23/2167 (1.06%) Evaluation on training data (939 items): ecoli251 5,1,4 Extrachromosomal Laterally acquirred elements Transposon-related functions 'yi52_1' 'IS5 protein 1' ecoli1373 5,1,4 Extrachromosomal Laterally acquirred elements Transposon-related functions 'yi22_2' 'IS22 protein 2' ecoli1955 5,1,4 Extrachromosomal Laterally acquirred elements Transposon-related functions 'yi22_3' 'IS2 protein' ecoli4201 - 4,1,5 Structural elements Cell envelop Surface structures 'fimB' 'regulator for fimA' ecoli3428 5,1,4 Extrachromosomal Laterally acquirred elements Transposon-related functions 'yi52_11' 'IS5 protein 11' ecoli2150 5,1,4 Extrachromosomal Laterally acquirred elements Transposon-related functions 'yi52_8' 'IS5 protein' ecoli542 5,1,4 Extrachromosomal Laterally acquirred elements Transposon-related functions 'yi52_2' 'IS 5 protein' ecoli16 5,1,4 Extrachromosomal Laterally acquirred elements Transposon-related functions 'yi81_1' 'homolog IS186 transposase' ecoli646 5,1,4 Extrachromosomal Laterally acquirred elements Transposon-related functions 'yi52_3' 'IS5 protein' ecoli1341 5,1,4 Extrachromosomal Laterally acquirred elements Transposon-related functions 'yi52_5' 'IS5 protein' ecoli267 5,1,4 Extrachromosomal Laterally acquirred elements Transposon-related functions 'insA_3' 'IS1 protein InsA' ecoli353 5,1,4 Extrachromosomal Laterally acquirred elements Transposon-related functions 'yi22_1' 'IS22 protein 1' ecoli1862 5,1,4 Extrachromosomal Laterally acquirred elements Transposon-related functions 'insA_5' 'IS1 protein InsA' ecoli2916 5,1,4 Extrachromosomal Laterally acquirred elements Transposon-related functions 'yi52_9' 'IS5 protein' Training Accuracy: 13/14 (92.86%) Training Frequency class 'Transposon-related functions': 22/939 (2.34%) Training Significance: dev(22.39) ; prob(8.778444E-21) Evaluation on validation data (471 items): ecoli257 5,1,4 Extrachromosomal Laterally acquirred elements Transposon-related functions 'insA_2' 'IS1 protein InsA 2' ecoli1302 5,1,4 Extrachromosomal Laterally acquirred elements Transposon-related functions 'yi52_4' 'IS5 protein' ecoli3045 - 3,4,2 Metabolism of small molecules Degradation of small molecules Amino acids 'yhaQ' 'L-serine dehydratase 3 part 1 (EC 4 2 1 13) fuse with b3111' ecoli3148 5,1,4 Extrachromosomal Laterally acquirred elements Transposon-related functions 'yi52_10' 'IS5 protein 10' ecoli334 - 3,4,3 Metabolism of small molecules Degradation of small molecules Carbon compounds 'lacA' 'thiogalactoside acetyltransferase' ecoli142 - 3,2,5 Metabolism of small molecules Biosynthesis of cofactors, carriers Folic acid 'folK' '78-dihydro-6-hydroxymethylpterin-pyrophosphokinase' ecoli4183 5,1,4 Extrachromosomal Laterally acquirred elements Transposon-related functions 'insA_7' 'IS1 protein InsA' ecoli3424 - 1,4,3 Cell processes Protection responses Drug/analog sensitivity 'arsR' 'transcriptional repressor of chromosomal ars operon' ecoli2797 5,1,4 Extrachromosomal Laterally acquirred elements Transposon-related functions 'yi22_4' 'IS2 protein' ecoli3367 5,1,4 Extrachromosomal Laterally acquirred elements Transposon-related functions 'insA_6' 'IS1 protein InsA' Validation Accuracy: 6/10 (60.00%) Validation Frequency class 'Transposon-related functions': 14/471 (2.97%) Validation Significance: dev(10.62) ; prob(1.283640E-07) ------------------ Rule 94: (17/1, lift 36.5) ecoli_hydro > 0.322 amino_acid_pair_ratio_ed <= 2.2 amino_acid_pair_ratio_fh <= 3 amino_acid_pair_ratio_px <= 0.7 amino_acid_pair_ratio_xc <= 1.5 amino_acid_pairs_ah <= 1 amino_acid_pairs_at <= 4 amino_acid_pairs_ea <= 2 amino_acid_pairs_gg <= 4 amino_acid_pairs_lv <= 6 amino_acid_pairs_sc <= 0 amino_acid_pairs_sk <= 1 sequence_length > 384 -> class 'MFS family' [0.895] Evaluation on test data (712 items): ecoli470 1,5,21 Cell processes Transport/binding proteins MFS family 'fsr' 'MFS family of transport protein fosmidomycin resistance protein(2nd module)' ecoli3525 - 1,5,23 Cell processes Transport/binding proteins Mechanism not stated 'lldP' 'L-lactate permease(1st module)' ecoli252 - 1,5,42 Cell processes Transport/binding proteins APC family of transport protein 'ykfD' 'APC family of transport protein S-methylmethionine permease' ecoli2324 1,5,21 Cell processes Transport/binding proteins MFS family 'emrY' 'MFS family of transport protein multidrug resistance protein y (2nd module)' ecoli2655 - 1,5,37 Cell processes Transport/binding proteins Sugar-specific PTS system 'ascF' 'PTS family enzyme II ABC (asc) cryptic transports specific beta-glucosides' ecoli3580 1,5,21 Cell processes Transport/binding proteins MFS family 'yicK' 'MFS family of transport protein two-module paral putative transport protein (2nd module)' ecoli1020 - 1,6,2 Cell processes Adaptation Osmotic adaptation 'b1047' 'membrane protein required for succinyl substitution of glucan backbone of OPG (osmoregulated periplasmic glucan) possible succinyl transferase' ecoli45 1,5,21 Cell processes Transport/binding proteins MFS family 'yaaU' 'MFS family transport protein' ecoli1875 - 1,5,43 Cell processes Transport/binding proteins ArAAP family 'tyrP' 'ArAAP family tyrosine-specific transport system' ecoli3959 - 1,5,8 Cell processes Transport/binding proteins CPA1 family 'yjcE' 'CPA1 family PUTATIVE NA(+)/H(+) EXCHANGER YJCE(1st module)' ecoli2123 - 1,5,7 Cell processes Transport/binding proteins CNT family 'yeiM' 'CNT family of transport protein' ecoli2051 - 1,5,37 Cell processes Transport/binding proteins Sugar-specific PTS system 'gatC' 'PTS family galactitol-specific enzyme IIC' Test Accuracy: 4/12 (33.33%) Test Frequency class 'MFS family': 14/712 (1.97%) Test Significance: dev(7.83) ; prob(6.519893E-05) Application to new data (2167 items): ecoli2111 - 0,0,0 Open reading frames Unknown proteins, no known homologs Unknown function 'yeiB' 'orf' ecoli4009 - 7,0,0 Miscellaneous Some information, but not classifiable Not classified (included putative assignments) 'b4115' 'putative amino acid/amine transport protein cryptic' ecoli2997 - 7,0,0 Miscellaneous Some information, but not classifiable Not classified (included putative assignments) 'ygjE' 'paral putative DASS family of transport protein' ecoli1658 - 7,0,0 Miscellaneous Some information, but not classifiable Not classified (included putative assignments) 'b1690' 'paral putative MFS family of transport protein' ecoli4221 - 7,0,0 Miscellaneous Some information, but not classifiable Not classified (included putative assignments) 'yjiJ' 'paral putative transport protein (2nd module)' ecoli1946 - 7,0,0 Miscellaneous Some information, but not classifiable Not classified (included putative assignments) 'b1985' 'paral putative transport protein (3rd module)' ecoli4193 - 7,0,0 Miscellaneous Some information, but not classifiable Not classified (included putative assignments) 'yjhN' 'paral putative PTS system enzyme IIC component' ecoli3635 - 0,0,0 Open reading frames Unknown proteins, no known homologs Unknown function 'yieG' 'orf (2nd module)' ecoli3300 - 0,0,0 Open reading frames Unknown proteins, no known homologs Unknown function 'yhfT' 'orf (2nd module)' Frequency rule on new data: 9/2167 (0.42%) Evaluation on training data (939 items): ecoli2057 1,5,21 Cell processes Transport/binding proteins MFS family 'b2098' 'MFS family of transport protein (2nd module)' ecoli1723 - 1,5,2 Cell processes Transport/binding proteins ABC superfamily (membrane) 'b1755' 'ABC superfamily (membrane) paral putative membrane component of transport system' ecoli1566 1,5,21 Cell processes Transport/binding proteins MFS family 'b1596' 'MFS familty transport protein (2nd module)' ecoli3154 1,5,21 Cell processes Transport/binding proteins MFS family 'nanT' 'MFS family of transport protein sialic acid transporter cryptic in K12?(1st module)' ecoli1026 1,5,21 Cell processes Transport/binding proteins MFS family 'yceE' 'MFS family of transport protein (2nd module)' ecoli425 1,5,21 Cell processes Transport/binding proteins MFS family 'ampG' 'MFS family of transport protein ampicillin resistance (1st module)' ecoli4226 1,5,21 Cell processes Transport/binding proteins MFS family 'yjiO' 'MFS family of transport protein (1st module)' ecoli2036 1,5,21 Cell processes Transport/binding proteins MFS family 'b2077' 'MFS family of transport protein (1st module)' ecoli3675 1,5,21 Cell processes Transport/binding proteins MFS family 'yieO' 'MFS family of tranport protein (1st mdule)' ecoli345 1,5,21 Cell processes Transport/binding proteins MFS family 'b0353' 'MFS family transport protein (2nd module function unknown)' ecoli3059 1,5,21 Cell processes Transport/binding proteins MFS family 'yhaU' 'MFS family of transport protein (D)-glucarate or galactarate transporter (1st module)' ecoli2129 1,5,21 Cell processes Transport/binding proteins MFS family 'yeiO' 'MFS family proton-coupled sugar efflux pump transport selective monosaccharides and disaccharides narrower substr. specificity than SetA(2nd module)' ecoli2899 1,5,21 Cell processes Transport/binding proteins MFS family 'nupG' 'MFS family of transport protein transport of nucleosides (2nd module)' ecoli388 1,5,21 Cell processes Transport/binding proteins MFS family 'araJ' 'MFS family of transport protein involved in either transport or processing of arabinose polymers (2nd module function unknown)' ecoli3287 1,5,21 Cell processes Transport/binding proteins MFS family 'yhfC' 'MFS family of transport protein paral putative transport protein' ecoli2878 1,5,21 Cell processes Transport/binding proteins MFS family 'galP' 'MFS family of transport protein galactose-proton symport of transport system (2nd module)' ecoli2741 1,5,21 Cell processes Transport/binding proteins MFS family 'fucP' 'MFS family of transport protein fucose permease(1st module)' Training Accuracy: 16/17 (94.12%) Training Frequency class 'MFS family': 23/939 (2.45%) Training Significance: dev(24.45) ; prob(2.788147E-25) Evaluation on validation data (471 items): ecoli2778 1,5,21 Cell processes Transport/binding proteins MFS family 'araE' 'MFS family of transport protein low-affinity L-arabinose transport system proton symport protein(1st module)' ecoli70 1,5,21 Cell processes Transport/binding proteins MFS family 'yabM' 'MFS family of transport protein proton-coupled beta-galactosidase/sugar efflux pump ? role in lactose metabolism (2nd module)' ecoli3490 - 1,5,2 Cell processes Transport/binding proteins ABC superfamily (membrane) 'xylH' 'ABC superfamily (membrane)d-xylose transport permease (2nd module might interact with atp hydrolysing subunit )' ecoli3223 - 1,2,1 Cell processes Chromosome replication Chromosome replication 'prlA' 'protein secretion inner membrane preprotein translocase SecY subunit interacts with SecE (1st module)' ecoli3588 1,5,21 Cell processes Transport/binding proteins MFS family 'uhpC' 'regulator of uhpT (1st module)' ecoli4005 1,5,21 Cell processes Transport/binding proteins MFS family 'proP' 'MFS family of tranport protein low-affinity constitutive transport system; proline permease II transports proline and betaine under conditions of hyperosmolarity(2nd module)' ecoli3631 1,5,21 Cell processes Transport/binding proteins MFS family 'yidY' 'MFS family of tranport protein (1st mdule)' ecoli3093 - 1,5,43 Cell processes Transport/binding proteins ArAAP family 'mtr' 'ArAAP family tryptophan-specific transport protein' ecoli4031 - 1,5,12 Cell processes Transport/binding proteins Dcu family 'dcuA' 'Dcu family anaerobic dicarboxylate transport' ecoli3709 - 3,3,18 Metabolism of small molecules Central intermediary metabolism Sugar-nucleotide biosynthesis, conversions 'rffT' 'synthesis of enterobacterial common antigen (ECA): TDP-Fuc4NAc:lipidII transferase(1st module)' ecoli1737 1,5,21 Cell processes Transport/binding proteins MFS family 'ydjE' 'MFS family of transport protein (1st module)' Validation Accuracy: 6/11 (54.55%) Validation Frequency class 'MFS family': 14/471 (2.97%) Validation Significance: dev(10.07) ; prob(2.740067E-07) ------------------