Rule 252: [hom( A ),e_val_rule( A ,4),amino_acid_ratio_rule(l,5),species( A ,homo_sapiens)] = 0 [hom( A ),species( A ,mycobacterium_tuberculosis),mol_wt_rule( A ,3),keyword( A ,transmembrane)] = 0 [hom( A ),classification( A ,bacteria),classification( A ,proteobacteria),keyword( A ,transmembrane),mol_wt_rule( A ,4)] = 1 amino_acid_pair_ratio_yr <= 5.3 [hom( A ),keyword( A ,alternative_splicing)] = 0 [hom( A ),species( A ,haemophilus_influenzae)] = 1 amino_acid_pair_ratio_cw <= 0.5 [hom( A ),classification( A ,bacteria),mol_wt_rule( A ,5)] = 1 [hom( A ),mol_wt_rule( A ,1),amino_acid_ratio_rule(l,5),species( A ,haemophilus_influenzae)] = 0 -> class 'function3(Fatty acids )' [95.0%] Evaluation on proper test data (811 items): tb35 1,1,3,0 Small-molecule metabolism Degradation Fatty acids Fatty acids 'fadD34' "acyl-CoA synthase" tb99 1,1,3,0 Small-molecule metabolism Degradation Fatty acids Fatty acids 'fadD10' "acyl-CoA synthase" tb101 - 1,9,0,0 Small-molecule metabolism Polyketide and non-ribosomal peptide synthesis Polyketide and non-ribosomal peptide synthesis Polyketide and non-ribosomal peptide synthesis 'nrp' "unknown non-ribosomal peptide synthase" tb860 1,1,3,0 Small-molecule metabolism Degradation Fatty acids Fatty acids 'fadB' "beta oxidation complex, alpha subunit (multiple activities)" tb952 - 1,2,3,0 Small-molecule metabolism Energy Metabolism TCA cycle TCA cycle 'sucD' "succinyl-CoA synthase alpha chain" tb971 1,1,3,0 Small-molecule metabolism Degradation Fatty acids Fatty acids 'echA7' "enoyl-CoA hydratase/isomerase superfamily " tb1013 - 1,9,0,0 Small-molecule metabolism Polyketide and non-ribosomal peptide synthesis Polyketide and non-ribosomal peptide synthesis Polyketide and non-ribosomal peptide synthesis 'pks16' "polyketide synthase " tb1521 1,1,3,0 Small-molecule metabolism Degradation Fatty acids Fatty acids 'fadD25' "acyl-CoA synthase" tb2187 1,1,3,0 Small-molecule metabolism Degradation Fatty acids Fatty acids 'fadD15' "acyl-CoA synthase" tb2486 1,1,3,0 Small-molecule metabolism Degradation Fatty acids Fatty acids 'echA14' "enoyl-CoA hydratase/isomerase superfamily " tb2590 1,1,3,0 Small-molecule metabolism Degradation Fatty acids Fatty acids 'fadD9' "acyl-CoA synthase" tb2831 1,1,3,0 Small-molecule metabolism Degradation Fatty acids Fatty acids 'echA16' "enoyl-CoA hydratase/isomerase superfamily " tb2930 1,1,3,0 Small-molecule metabolism Degradation Fatty acids Fatty acids 'fadD26' "acyl-CoA synthase" tb3373 1,1,3,0 Small-molecule metabolism Degradation Fatty acids Fatty acids 'echA18' "enoyl-CoA hydratase/isomerase superfamily, N-term" tb3513 1,1,3,0 Small-molecule metabolism Degradation Fatty acids Fatty acids 'fadD18' "acyl-CoA synthase" tb3516 1,1,3,0 Small-molecule metabolism Degradation Fatty acids Fatty acids 'echA19' "enoyl-CoA hydratase/isomerase superfamily " Proper test Accuracy: 13/16 (81.25%) Application to new data (498 items): Total: 0 Evaluation on training data (1060 items): tb119 1,1,3,0 Small-molecule metabolism Degradation Fatty acids Fatty acids 'fadD7' "acyl-CoA synthase" tb166 1,1,3,0 Small-molecule metabolism Degradation Fatty acids Fatty acids 'fadD5' "acyl-CoA synthase" tb214 1,1,3,0 Small-molecule metabolism Degradation Fatty acids Fatty acids 'fadD4' "acyl-CoA synthase" tb222 1,1,3,0 Small-molecule metabolism Degradation Fatty acids Fatty acids 'echA1' "enoyl-CoA hydratase/isomerase superfamily " tb270 1,1,3,0 Small-molecule metabolism Degradation Fatty acids Fatty acids 'fadD2' "acyl-CoA synthase" tb404 1,1,3,0 Small-molecule metabolism Degradation Fatty acids Fatty acids 'fadD30' "acyl-CoA synthase" tb551 1,1,3,0 Small-molecule metabolism Degradation Fatty acids Fatty acids 'fadD8' "acyl-CoA synthase" tb632 1,1,3,0 Small-molecule metabolism Degradation Fatty acids Fatty acids 'echA3' "enoyl-CoA hydratase/isomerase superfamily " tb675 1,1,3,0 Small-molecule metabolism Degradation Fatty acids Fatty acids 'echA5' "enoyl-CoA hydratase/isomerase superfamily " tb905 1,1,3,0 Small-molecule metabolism Degradation Fatty acids Fatty acids 'echA6' "enoyl-CoA hydratase/isomerase superfamily (aka eccH)" tb1058 1,1,3,0 Small-molecule metabolism Degradation Fatty acids Fatty acids 'fadD14' "acyl-CoA synthase" tb1070 1,1,3,0 Small-molecule metabolism Degradation Fatty acids Fatty acids 'echA8' "enoyl-CoA hydratase/isomerase superfamily " tb1071 1,1,3,0 Small-molecule metabolism Degradation Fatty acids Fatty acids 'echA9' "enoyl-CoA hydratase/isomerase superfamily " tb1141 1,1,3,0 Small-molecule metabolism Degradation Fatty acids Fatty acids 'echA11' "enoyl-CoA hydratase/isomerase superfamily" tb1142 1,1,3,0 Small-molecule metabolism Degradation Fatty acids Fatty acids 'echA10' "enoyl-CoA hydratase/isomerase superfamily" tb1185 1,1,3,0 Small-molecule metabolism Degradation Fatty acids Fatty acids 'fadD21' "acyl-CoA synthase" tb1193 1,1,3,0 Small-molecule metabolism Degradation Fatty acids Fatty acids 'fadD36' "acyl-CoA synthase" tb1345 1,1,3,0 Small-molecule metabolism Degradation Fatty acids Fatty acids 'fadD33' "acyl-CoA synthase" tb1427 1,1,3,0 Small-molecule metabolism Degradation Fatty acids Fatty acids 'fadD12' "acyl-CoA synthase" tb1472 1,1,3,0 Small-molecule metabolism Degradation Fatty acids Fatty acids 'echA12' "enoyl-CoA hydratase/isomerase superfamily" tb1529 1,1,3,0 Small-molecule metabolism Degradation Fatty acids Fatty acids 'fadD24' "acyl-CoA synthase" tb1549 1,1,3,0 Small-molecule metabolism Degradation Fatty acids Fatty acids 'fadD11' "null" tb1683 1,1,3,0 Small-molecule metabolism Degradation Fatty acids Fatty acids 'null' "null" tb1750 1,1,3,0 Small-molecule metabolism Degradation Fatty acids Fatty acids 'fadD1' "acyl-CoA synthase" tb1925 1,1,3,0 Small-molecule metabolism Degradation Fatty acids Fatty acids 'fadD31' "acyl-CoA synthase" tb1935 1,1,3,0 Small-molecule metabolism Degradation Fatty acids Fatty acids 'echA13' "enoyl-CoA hydratase/isomerase superfamily " tb2505 1,1,3,0 Small-molecule metabolism Degradation Fatty acids Fatty acids 'fadD35' "acyl-CoA synthase" Training Accuracy: 27/27 (100.00%) Evaluation on test data (531 items): tb2782 - 2,2,3,0 Macromolecule metabolism Degradation of macromolecules Proteins, peptides and glycopeptides Proteins, peptides and glycopeptides 'pepR' "protease/peptidase, M16 family (insulinase)" tb2941 1,1,3,0 Small-molecule metabolism Degradation Fatty acids Fatty acids 'fadD28' "acyl-CoA synthase" tb2948 1,1,3,0 Small-molecule metabolism Degradation Fatty acids Fatty acids 'fadD22' "acyl-CoA synthase" tb2950 1,1,3,0 Small-molecule metabolism Degradation Fatty acids Fatty acids 'fadD29' "acyl-CoA synthase" tb3089 1,1,3,0 Small-molecule metabolism Degradation Fatty acids Fatty acids 'fadD13' "acyl-CoA synthase" tb3506 1,1,3,0 Small-molecule metabolism Degradation Fatty acids Fatty acids 'fadD17' "acyl-CoA synthase" tb3550 1,1,3,0 Small-molecule metabolism Degradation Fatty acids Fatty acids 'echA20' "enoyl-CoA hydratase/isomerase superfamily" tb3561 1,1,3,0 Small-molecule metabolism Degradation Fatty acids Fatty acids 'fadD3' "acyl-CoA synthase" tb3667 1,1,3,0 Small-molecule metabolism Degradation Fatty acids Fatty acids 'acs' "acetyl-CoA synthase" tb3774 1,1,3,0 Small-molecule metabolism Degradation Fatty acids Fatty acids 'echA21' "enoyl-CoA hydratase/isomerase superfamily" tb3801 1,1,3,0 Small-molecule metabolism Degradation Fatty acids Fatty acids 'fadD32' "acyl-CoA synthase" tb3826 1,1,3,0 Small-molecule metabolism Degradation Fatty acids Fatty acids 'fadD23' "acyl-CoA synthase" Test Accuracy: 11/12 (91.67%) Application to new data (1023 items): Total: 0 ------------------ Rule 268: [hom( A ),keyword( A ,alternative_splicing),mol_wt_rule( A ,4)] = 0 [hom( A ),mol_wt_rule( A ,1),amino_acid_ratio_rule(c,1),species( A ,mycobacterium_tuberculosis)] = 1 [hom( A ),classification( A ,bacteria),classification( A ,proteobacteria),keyword( A ,transmembrane),mol_wt_rule( A ,4)] = 1 [hom( A ),species( A ,escherichia_coli),amino_acid_ratio_rule(l,5),classification( A ,bacteria),mol_wt_rule( A ,3),classification( A ,proteobacteria)] = 1 -> class 'function3(Two component systems )' [82.0%] Evaluation on proper test data (811 items): tb757 1,10,2,0 Small-molecule metabolism Broad regulatory functions Two component systems Two component systems 'phoP' "two-component response regulator" tb1626 1,10,2,0 Small-molecule metabolism Broad regulatory functions Two component systems Two component systems 'null' "null" tb3765 1,10,2,0 Small-molecule metabolism Broad regulatory functions Two component systems Two component systems 'null' "null" Proper test Accuracy: 3/3 (100.00%) Application to new data (498 items): Total: 0 Evaluation on training data (1060 items): tb491 1,10,2,0 Small-molecule metabolism Broad regulatory functions Two component systems Two component systems 'regX3' "two-component response regulator" tb602 1,10,2,0 Small-molecule metabolism Broad regulatory functions Two component systems Two component systems 'tcrA' "two-component response regulator" tb844 1,10,2,0 Small-molecule metabolism Broad regulatory functions Two component systems Two component systems 'narL' "two-component response regulator" tb903 1,10,2,0 Small-molecule metabolism Broad regulatory functions Two component systems Two component systems 'null' "null" tb981 1,10,2,0 Small-molecule metabolism Broad regulatory functions Two component systems Two component systems 'null' "null" tb1027 1,10,2,0 Small-molecule metabolism Broad regulatory functions Two component systems Two component systems 'kdpE' "two-component response regulator" tb1033 1,10,2,0 Small-molecule metabolism Broad regulatory functions Two component systems Two component systems 'null' "null" Training Accuracy: 7/7 (100.00%) Evaluation on test data (531 items): tb3246 1,10,2,0 Small-molecule metabolism Broad regulatory functions Two component systems Two component systems 'mtrA' "two-component response regulator" tb3273 - 4,9,0,0 Other Miscellaneous phosphatases, lyases, and hydrolases Miscellaneous phosphatases, lyases, and hydrolases Miscellaneous phosphatases, lyases, and hydrolases 'null' "null" Test Accuracy: 1/2 (50.00%) Application to new data (1023 items): Total: 0 ------------------ Rule 262: [hom( A ),e_val_rule( A ,2),mol_wt_rule( A ,1),classification( A ,eukaryota)] = 1 [hom( A ),mol_wt_rule( A ,1),amino_acid_ratio_rule(c,1),species( A ,mycobacterium_tuberculosis)] = 0 [hom( A ),mol_wt_rule( A ,2),amino_acid_ratio_rule(a,5),e_val_rule( A ,1)] = 0 [hom( A ),classification( A ,bacteria),classification( A ,proteobacteria),keyword( A ,transmembrane),mol_wt_rule( A ,4)] = 1 [hom( A ),classification( A ,bacteria),classification( A ,firmicutes),e_val_rule( A ,1),amino_acid_ratio_rule(t,3),classification( A ,actinobacteria)] = 0 [hom( A ),species( A ,escherichia_coli),amino_acid_ratio_rule(l,5),classification( A ,bacteria),mol_wt_rule( A ,3),classification( A ,proteobacteria)] = 1 -> class 'function3(Other membrane proteins )' [88.2%] Evaluation on proper test data (811 items): tb194 2,3,5,0 Macromolecule metabolism Cell envelope Other membrane proteins Other membrane proteins 'null' "null" tb3041 2,3,5,0 Macromolecule metabolism Cell envelope Other membrane proteins Other membrane proteins 'null' "null" tb3102 - 3,3,0,0 Cell Processes Cell division Cell division Cell division 'ftsE' "membrane protein" Proper test Accuracy: 2/3 (66.67%) Application to new data (498 items): Total: 0 Evaluation on training data (1060 items): tb986 2,3,5,0 Macromolecule metabolism Cell envelope Other membrane proteins Other membrane proteins 'null' "null" tb1272 2,3,5,0 Macromolecule metabolism Cell envelope Other membrane proteins Other membrane proteins 'null' "null" tb1273 2,3,5,0 Macromolecule metabolism Cell envelope Other membrane proteins Other membrane proteins 'null' "null" tb1348 2,3,5,0 Macromolecule metabolism Cell envelope Other membrane proteins Other membrane proteins 'null' "null" tb1349 2,3,5,0 Macromolecule metabolism Cell envelope Other membrane proteins Other membrane proteins 'null' "null" tb1458 2,3,5,0 Macromolecule metabolism Cell envelope Other membrane proteins Other membrane proteins 'null' "null" tb1463 2,3,5,0 Macromolecule metabolism Cell envelope Other membrane proteins Other membrane proteins 'null' "null" tb1473 2,3,5,0 Macromolecule metabolism Cell envelope Other membrane proteins Other membrane proteins 'null' "null" tb1687 2,3,5,0 Macromolecule metabolism Cell envelope Other membrane proteins Other membrane proteins 'null' "null" tb1747 2,3,5,0 Macromolecule metabolism Cell envelope Other membrane proteins Other membrane proteins 'null' "null" tb2326 2,3,5,0 Macromolecule metabolism Cell envelope Other membrane proteins Other membrane proteins 'null' "null" Training Accuracy: 11/11 (100.00%) Evaluation on test data (531 items): tb3781 2,3,5,0 Macromolecule metabolism Cell envelope Other membrane proteins Other membrane proteins 'null' "null" Test Accuracy: 1/1 (100.00%) Application to new data (1023 items): Total: 0 ------------------ Rule 102: amino_acid_pair_ratio_dy <= 6.7 [hom( A ),e_val_rule( A ,2),amino_acid_ratio_rule(h,2),species( A ,bacillus_subtilis)] = 0 [hom( A ),classification( A ,bacteria),classification( A ,proteobacteria),keyword( A ,transmembrane),mol_wt_rule( A ,4)] = 0 amino_acid_pair_ratio_mc <= 4 [hom( A ),classification( A ,eukaryota),amino_acid_ratio_rule(g,5)] = 0 [hom( A ),e_val_rule( A ,4),amino_acid_ratio_rule(c,1),classification( A ,eukaryota),mol_wt_rule( A ,1)] = 0 amino_acid_pair_ratio_wt <= 1.2 [hom( A ),classification( A ,eukaryota),classification( A ,fungi),mol_wt_rule( A ,1)] = 0 [hom( A ),e_val_rule( A ,1),amino_acid_ratio_rule(r,4),species( A ,escherichia_coli)] = 0 [hom( A ),classification( A ,bacteria),classification( A ,firmicutes),e_val_rule( A ,1),amino_acid_ratio_rule(q,2),classification( A ,bacillus)] = 0 [hom( A ),species( A ,bacillus_subtilis),amino_acid_ratio_rule(w,1),classification( A ,bacteria),mol_wt_rule( A ,1),classification( A ,firmicutes)] = 1 [hom( A ),species( A ,haemophilus_influenzae),amino_acid_ratio_rule(f,2),classification( A ,bacteria),e_val_rule( A ,2),classification( A ,proteobacteria)] = 0 -> class 'function3(Repressors/activators )' [91.5%] Evaluation on proper test data (811 items): tb135 1,10,1,0 Small-molecule metabolism Broad regulatory functions Repressors/activators Repressors/activators 'null' "null" tb328 1,10,1,0 Small-molecule metabolism Broad regulatory functions Repressors/activators Repressors/activators 'null' "null" tb353 - 3,2,0,0 Cell Processes Chaperones/Heat shock Chaperones/Heat shock Chaperones/Heat shock 'hspR' "heat shock regulator" tb371 - 2,3,5,0 Macromolecule metabolism Cell envelope Other membrane proteins Other membrane proteins 'null' "null" tb469 - 1,8,2,0 Small-molecule metabolism Lipid Biosynthesis Modification of fatty and mycolic acids Modification of fatty and mycolic acids 'umaA1' "unknown mycolic acid methyltransferase" tb474 1,10,1,0 Small-molecule metabolism Broad regulatory functions Repressors/activators Repressors/activators 'null' "null" tb586 1,10,1,0 Small-molecule metabolism Broad regulatory functions Repressors/activators Repressors/activators 'null' "null" tb827 1,10,1,0 Small-molecule metabolism Broad regulatory functions Repressors/activators Repressors/activators 'null' "null" tb1015 - 2,1,1,0 Macromolecule metabolism Synthesis and modification of macromolecules Ribosomal protein synthesis and modification Ribosomal protein synthesis and modification 'rplY' "50S ribosomal protein L25" tb1189 - 2,1,7,0 Macromolecule metabolism Synthesis and modification of macromolecules RNA synthesis, RNA modification and DNA transcription RNA synthesis, RNA modification and DNA transcription 'sigI' "ECF family sigma factor" tb1448 - 1,2,5,0 Small-molecule metabolism Energy Metabolism Pentose phosphate pathway Pentose phosphate pathway 'tal' "transaldolase" tb1811 - 3,1,2,0 Cell Processes Transport/binding proteins Cations Cations 'mgtC' "probable magnesium transport ATPase protein C" tb1824 - 2,3,5,0 Macromolecule metabolism Cell envelope Other membrane proteins Other membrane proteins 'null' "null" tb1848 - 1,1,2,0 Small-molecule metabolism Degradation Amino acids and amines Amino acids and amines 'ureA' "urease gamma subunit" tb1909 1,10,1,0 Small-molecule metabolism Broad regulatory functions Repressors/activators Repressors/activators 'furA' "ferric uptake regulatory protein" tb1931 1,10,1,0 Small-molecule metabolism Broad regulatory functions Repressors/activators Repressors/activators 'null' "null" tb1937 - 1,2,7,0 Small-molecule metabolism Energy Metabolism Miscellaneous oxidoreductases and oxygenases; Miscellaneous oxidoreductases and oxygenases; 'null' "null" tb2583 - 1,6,5,0 Small-molecule metabolism Purines, pyrimidines, nucleosides and nucleotides Miscellaneous nucleoside/nucleotide reactions Miscellaneous nucleoside/nucleotide reactions 'relA' "(p)ppGpp synthase I" tb2640 1,10,1,0 Small-molecule metabolism Broad regulatory functions Repressors/activators Repressors/activators 'null' "null" tb2779 1,10,1,0 Small-molecule metabolism Broad regulatory functions Repressors/activators Repressors/activators 'null' "null" tb2838 - 2,1,2,0 Macromolecule metabolism Synthesis and modification of macromolecules Ribosome modification and maturation Ribosome modification and maturation 'rbfA' "ribosome-binding factor A" tb3052 - 1,6,3,0 Small-molecule metabolism Purines, pyrimidines, nucleosides and nucleotides 2'-deoxyribonucleotide metabolism 2'-deoxyribonucleotide metabolism 'nrdI' "NrdI/YgaO/YmaA family" tb3167 1,10,1,0 Small-molecule metabolism Broad regulatory functions Repressors/activators Repressors/activators 'null' "null" tb3173 1,10,1,0 Small-molecule metabolism Broad regulatory functions Repressors/activators Repressors/activators 'null' "null" tb3208 1,10,1,0 Small-molecule metabolism Broad regulatory functions Repressors/activators Repressors/activators 'null' "null" tb3213 - 3,3,0,0 Cell Processes Cell division Cell division Cell division 'null' "null" tb3237 - 3,1,2,0 Cell Processes Transport/binding proteins Cations Cations 'null' "null" tb3291 1,10,1,0 Small-molecule metabolism Broad regulatory functions Repressors/activators Repressors/activators 'null' "null" tb3392 - 1,8,2,0 Small-molecule metabolism Lipid Biosynthesis Modification of fatty and mycolic acids Modification of fatty and mycolic acids 'cmaA1' "cyclopropane mycolic acid synthase 1" tb3461 - 2,1,1,0 Macromolecule metabolism Synthesis and modification of macromolecules Ribosomal protein synthesis and modification Ribosomal protein synthesis and modification 'rpmJ' "50S ribosomal protein L36" tb3574 1,10,1,0 Small-molecule metabolism Broad regulatory functions Repressors/activators Repressors/activators 'null' "null" tb3579 - 4,8,0,0 Other Miscellaneous transferases Miscellaneous transferases Miscellaneous transferases 'null' "null" tb3736 1,10,1,0 Small-molecule metabolism Broad regulatory functions Repressors/activators Repressors/activators 'null' "null" tb3807 - 2,3,5,0 Macromolecule metabolism Cell envelope Other membrane proteins Other membrane proteins 'null' "null" tb3919 - 3,3,0,0 Cell Processes Cell division Cell division Cell division 'gid' "glucose inhibited division protein B" Proper test Accuracy: 15/35 (42.86%) Application to new data (498 items): tb880 - 5,0,0,0 Conserved hypotheticals Conserved hypotheticals Conserved hypotheticals Conserved hypotheticals 'null' "null" tb2367 - 5,0,0,0 Conserved hypotheticals Conserved hypotheticals Conserved hypotheticals Conserved hypotheticals 'null' "null" tb2626 - 5,0,0,0 Conserved hypotheticals Conserved hypotheticals Conserved hypotheticals Conserved hypotheticals 'null' "null" tb3005 - 5,0,0,0 Conserved hypotheticals Conserved hypotheticals Conserved hypotheticals Conserved hypotheticals 'null' "null" tb3716 - 5,0,0,0 Conserved hypotheticals Conserved hypotheticals Conserved hypotheticals Conserved hypotheticals 'null' "null" Total: 5 Evaluation on training data (1060 items): tb43 1,10,1,0 Small-molecule metabolism Broad regulatory functions Repressors/activators Repressors/activators 'null' "null" tb67 1,10,1,0 Small-molecule metabolism Broad regulatory functions Repressors/activators Repressors/activators 'null' "null" tb78 1,10,1,0 Small-molecule metabolism Broad regulatory functions Repressors/activators Repressors/activators 'null' "null" tb81 1,10,1,0 Small-molecule metabolism Broad regulatory functions Repressors/activators Repressors/activators 'null' "null" tb196 1,10,1,0 Small-molecule metabolism Broad regulatory functions Repressors/activators Repressors/activators 'null' "null" tb232 1,10,1,0 Small-molecule metabolism Broad regulatory functions Repressors/activators Repressors/activators 'null' "null" tb238 1,10,1,0 Small-molecule metabolism Broad regulatory functions Repressors/activators Repressors/activators 'null' "null" tb302 1,10,1,0 Small-molecule metabolism Broad regulatory functions Repressors/activators Repressors/activators 'null' "null" tb494 1,10,1,0 Small-molecule metabolism Broad regulatory functions Repressors/activators Repressors/activators 'null' "null" tb737 1,10,1,0 Small-molecule metabolism Broad regulatory functions Repressors/activators Repressors/activators 'null' "null" tb1019 1,10,1,0 Small-molecule metabolism Broad regulatory functions Repressors/activators Repressors/activators 'null' "null" tb1152 1,10,1,0 Small-molecule metabolism Broad regulatory functions Repressors/activators Repressors/activators 'null' "null" tb1395 1,10,1,0 Small-molecule metabolism Broad regulatory functions Repressors/activators Repressors/activators 'null' "null" tb1404 1,10,1,0 Small-molecule metabolism Broad regulatory functions Repressors/activators Repressors/activators 'null' "null" tb1474 1,10,1,0 Small-molecule metabolism Broad regulatory functions Repressors/activators Repressors/activators 'null' "null" tb1534 1,10,1,0 Small-molecule metabolism Broad regulatory functions Repressors/activators Repressors/activators 'null' "null" tb1556 1,10,1,0 Small-molecule metabolism Broad regulatory functions Repressors/activators Repressors/activators 'null' "null" tb1657 1,10,1,0 Small-molecule metabolism Broad regulatory functions Repressors/activators Repressors/activators 'argR' "arginine repressor" tb1674 1,10,1,0 Small-molecule metabolism Broad regulatory functions Repressors/activators Repressors/activators 'null' "null" tb1675 1,10,1,0 Small-molecule metabolism Broad regulatory functions Repressors/activators Repressors/activators 'null' "null" tb1719 1,10,1,0 Small-molecule metabolism Broad regulatory functions Repressors/activators Repressors/activators 'null' "null" tb1786 - 1,2,7,0 Small-molecule metabolism Energy Metabolism Miscellaneous oxidoreductases and oxygenases; Miscellaneous oxidoreductases and oxygenases; 'null' "null" tb1963 1,10,1,0 Small-molecule metabolism Broad regulatory functions Repressors/activators Repressors/activators 'null' "null" tb1994 1,10,1,0 Small-molecule metabolism Broad regulatory functions Repressors/activators Repressors/activators 'null' "null" tb2324 1,10,1,0 Small-molecule metabolism Broad regulatory functions Repressors/activators Repressors/activators 'null' "null" tb2358 1,10,1,0 Small-molecule metabolism Broad regulatory functions Repressors/activators Repressors/activators 'null' "null" tb2359 1,10,1,0 Small-molecule metabolism Broad regulatory functions Repressors/activators Repressors/activators 'furB' "ferric uptake regulatory protein" tb2488 1,10,1,0 Small-molecule metabolism Broad regulatory functions Repressors/activators Repressors/activators 'null' "null" tb2506 1,10,1,0 Small-molecule metabolism Broad regulatory functions Repressors/activators Repressors/activators 'null' "null" tb2642 1,10,1,0 Small-molecule metabolism Broad regulatory functions Repressors/activators Repressors/activators 'null' "null" Training Accuracy: 29/30 (96.67%) Evaluation on test data (531 items): tb2711 1,10,1,0 Small-molecule metabolism Broad regulatory functions Repressors/activators Repressors/activators 'ideR' "iron dependent repressor, IdeR" tb2745 1,10,1,0 Small-molecule metabolism Broad regulatory functions Repressors/activators Repressors/activators 'null' "null" tb2786 - 1,7,9,0 Small-molecule metabolism Biosynthesis of cofactors, prosthetic groups and carriers Riboflavin Riboflavin 'ribF' "riboflavin kinase" tb2848 - 1,7,13,0 Small-molecule metabolism Biosynthesis of cofactors, prosthetic groups and carriers Cobalamin Cobalamin 'cobB' "cobyrinic acid a,c-diamide synthase" tb2887 1,10,1,0 Small-molecule metabolism Broad regulatory functions Repressors/activators Repressors/activators 'null' "null" tb2912 1,10,1,0 Small-molecule metabolism Broad regulatory functions Repressors/activators Repressors/activators 'null' "null" tb2928 - 1,9,0,0 Small-molecule metabolism Polyketide and non-ribosomal peptide synthesis Polyketide and non-ribosomal peptide synthesis Polyketide and non-ribosomal peptide synthesis 'tesA' "thioesterase" tb3055 1,10,1,0 Small-molecule metabolism Broad regulatory functions Repressors/activators Repressors/activators 'null' "null" tb3058 1,10,1,0 Small-molecule metabolism Broad regulatory functions Repressors/activators Repressors/activators 'null' "null" tb3082 1,10,1,0 Small-molecule metabolism Broad regulatory functions Repressors/activators Repressors/activators 'virS' "putative virulence regulating protein (AraC/XylS family)" tb3160 1,10,1,0 Small-molecule metabolism Broad regulatory functions Repressors/activators Repressors/activators 'null' "null" tb3223 - 2,1,7,0 Macromolecule metabolism Synthesis and modification of macromolecules RNA synthesis, RNA modification and DNA transcription RNA synthesis, RNA modification and DNA transcription 'sigH' "ECF subfamily sigma subunit" tb3241 - 2,1,1,0 Macromolecule metabolism Synthesis and modification of macromolecules Ribosomal protein synthesis and modification Ribosomal protein synthesis and modification 'null' "null" tb3295 1,10,1,0 Small-molecule metabolism Broad regulatory functions Repressors/activators Repressors/activators 'null' "null" tb3334 1,10,1,0 Small-molecule metabolism Broad regulatory functions Repressors/activators Repressors/activators 'null' "null" tb3405 1,10,1,0 Small-molecule metabolism Broad regulatory functions Repressors/activators Repressors/activators 'null' "null" tb3414 - 2,1,7,0 Macromolecule metabolism Synthesis and modification of macromolecules RNA synthesis, RNA modification and DNA transcription RNA synthesis, RNA modification and DNA transcription 'sigD' "ECF subfamily sigma subunit" tb3601 - 1,7,5,0 Small-molecule metabolism Biosynthesis of cofactors, prosthetic groups and carriers Pantothenate Pantothenate 'panD' "aspartate 1-decarboxylase" tb3680 - 3,1,4,0 Cell Processes Transport/binding proteins Anions Anions 'null' "null" tb3699 - 4,8,0,0 Other Miscellaneous transferases Miscellaneous transferases Miscellaneous transferases 'null' "null" tb3744 1,10,1,0 Small-molecule metabolism Broad regulatory functions Repressors/activators Repressors/activators 'null' "null" tb3838 - 1,4,4,0 Small-molecule metabolism Amino acid biosynthesis Aromatic amino acid family Aromatic amino acid family 'pheA' "prephenate dehydratase" tb3911 - 2,1,7,0 Macromolecule metabolism Synthesis and modification of macromolecules RNA synthesis, RNA modification and DNA transcription RNA synthesis, RNA modification and DNA transcription 'sigM' "probable sigma factor, similar to SigE" tb3915 - 2,2,4,0 Macromolecule metabolism Degradation of macromolecules Polysaccharides, lipopolysaccharides and phospholipids Polysaccharides, lipopolysaccharides and phospholipids 'cwlM' "hydrolase" Test Accuracy: 12/24 (50.00%) Application to new data (1023 items): tb42 - 5,0,0,0 Conserved hypotheticals Conserved hypotheticals Conserved hypotheticals Conserved hypotheticals 'null' "null" tb190 - 5,0,0,0 Conserved hypotheticals Conserved hypotheticals Conserved hypotheticals Conserved hypotheticals 'null' "null" tb339 - 5,0,0,0 Conserved hypotheticals Conserved hypotheticals Conserved hypotheticals Conserved hypotheticals 'null' "null" tb793 - 5,0,0,0 Conserved hypotheticals Conserved hypotheticals Conserved hypotheticals Conserved hypotheticals 'null' "null" tb967 - 5,0,0,0 Conserved hypotheticals Conserved hypotheticals Conserved hypotheticals Conserved hypotheticals 'null' "null" tb1232 - 6,0,0,0 Unknowns Unknowns Unknowns Unknowns 'null' "null" tb1685 - 5,0,0,0 Conserved hypotheticals Conserved hypotheticals Conserved hypotheticals Conserved hypotheticals 'null' "null" tb1710 - 5,0,0,0 Conserved hypotheticals Conserved hypotheticals Conserved hypotheticals Conserved hypotheticals 'null' "null" tb1766 - 5,0,0,0 Conserved hypotheticals Conserved hypotheticals Conserved hypotheticals Conserved hypotheticals 'null' "null" tb1847 - 5,0,0,0 Conserved hypotheticals Conserved hypotheticals Conserved hypotheticals Conserved hypotheticals 'null' "null" tb2028 - 5,0,0,0 Conserved hypotheticals Conserved hypotheticals Conserved hypotheticals Conserved hypotheticals 'null' "null" tb2327 - 5,0,0,0 Conserved hypotheticals Conserved hypotheticals Conserved hypotheticals Conserved hypotheticals 'null' "null" tb2406 - 5,0,0,0 Conserved hypotheticals Conserved hypotheticals Conserved hypotheticals Conserved hypotheticals 'null' "null" tb2415 - 5,0,0,0 Conserved hypotheticals Conserved hypotheticals Conserved hypotheticals Conserved hypotheticals 'null' "null" tb2478 - 6,0,0,0 Unknowns Unknowns Unknowns Unknowns 'null' "null" tb2624 - 5,0,0,0 Conserved hypotheticals Conserved hypotheticals Conserved hypotheticals Conserved hypotheticals 'null' "null" tb2749 - 5,0,0,0 Conserved hypotheticals Conserved hypotheticals Conserved hypotheticals Conserved hypotheticals 'null' "null" tb2842 - 5,0,0,0 Conserved hypotheticals Conserved hypotheticals Conserved hypotheticals Conserved hypotheticals 'null' "null" tb3600 - 5,0,0,0 Conserved hypotheticals Conserved hypotheticals Conserved hypotheticals Conserved hypotheticals 'null' "null" tb3687 - 5,0,0,0 Conserved hypotheticals Conserved hypotheticals Conserved hypotheticals Conserved hypotheticals 'null' "null" tb3688 - 5,0,0,0 Conserved hypotheticals Conserved hypotheticals Conserved hypotheticals Conserved hypotheticals 'null' "null" tb3788 - 6,0,0,0 Unknowns Unknowns Unknowns Unknowns 'null' "null" tb3888 - 5,0,0,0 Conserved hypotheticals Conserved hypotheticals Conserved hypotheticals Conserved hypotheticals 'null' "null" Total: 23 ------------------ Rule 3: (29/1, lift 18.7) amino_acid_pair_ratio_yr <= 5.4 [hom( A ),keyword( A ,alternative_splicing)] = 0 [hom( A ),species( A ,homo_sapiens)] = 1 [hom( A ),e_val_rule( A ,2)] = 1 [hom( A ),e_val_rule( A ,5),amino_acid_ratio_rule(n,1)] = 0 [hom( A ),classification( A ,bacteria),mol_wt_rule( A ,5)] = 1 [hom( A ),classification( A ,bacteria),classification( A ,proteobacteria),keyword( A ,transmembrane),mol_wt_rule( A ,4)] = 1 [hom( A ),species( A ,escherichia_coli),amino_acid_ratio_rule(l,5),classification( A ,bacteria),mol_wt_rule( A ,3),classification( A ,proteobacteria)] = 0 -> class 'function3(Fatty acids )' [0.935] Evaluation on proper test data (811 items): tb35 1,1,3,0 Small-molecule metabolism Degradation Fatty acids Fatty acids 'fadD34' "acyl-CoA synthase" tb99 1,1,3,0 Small-molecule metabolism Degradation Fatty acids Fatty acids 'fadD10' "acyl-CoA synthase" tb101 - 1,9,0,0 Small-molecule metabolism Polyketide and non-ribosomal peptide synthesis Polyketide and non-ribosomal peptide synthesis Polyketide and non-ribosomal peptide synthesis 'nrp' "unknown non-ribosomal peptide synthase" tb673 1,1,3,0 Small-molecule metabolism Degradation Fatty acids Fatty acids 'echA4' "enoyl-CoA hydratase/isomerase superfamily " tb860 1,1,3,0 Small-molecule metabolism Degradation Fatty acids Fatty acids 'fadB' "beta oxidation complex, alpha subunit (multiple activities)" tb952 - 1,2,3,0 Small-molecule metabolism Energy Metabolism TCA cycle TCA cycle 'sucD' "succinyl-CoA synthase alpha chain" tb1013 - 1,9,0,0 Small-molecule metabolism Polyketide and non-ribosomal peptide synthesis Polyketide and non-ribosomal peptide synthesis Polyketide and non-ribosomal peptide synthesis 'pks16' "polyketide synthase " tb1206 1,1,3,0 Small-molecule metabolism Degradation Fatty acids Fatty acids 'fadD6' "acyl-CoA synthase" tb1521 1,1,3,0 Small-molecule metabolism Degradation Fatty acids Fatty acids 'fadD25' "acyl-CoA synthase" tb1550 1,1,3,0 Small-molecule metabolism Degradation Fatty acids Fatty acids 'fadD11' "acyl-CoA synthase, N-term" tb2187 1,1,3,0 Small-molecule metabolism Degradation Fatty acids Fatty acids 'fadD15' "acyl-CoA synthase" tb2379 - 1,9,0,0 Small-molecule metabolism Polyketide and non-ribosomal peptide synthesis Polyketide and non-ribosomal peptide synthesis Polyketide and non-ribosomal peptide synthesis 'mbtF' "mycobactin/exochelin synthesis (lysine ligation)" tb2486 1,1,3,0 Small-molecule metabolism Degradation Fatty acids Fatty acids 'echA14' "enoyl-CoA hydratase/isomerase superfamily " tb2590 1,1,3,0 Small-molecule metabolism Degradation Fatty acids Fatty acids 'fadD9' "acyl-CoA synthase" tb2679 1,1,3,0 Small-molecule metabolism Degradation Fatty acids Fatty acids 'echA15' "enoyl-CoA hydratase/isomerase superfamily " tb2831 1,1,3,0 Small-molecule metabolism Degradation Fatty acids Fatty acids 'echA16' "enoyl-CoA hydratase/isomerase superfamily " tb2930 1,1,3,0 Small-molecule metabolism Degradation Fatty acids Fatty acids 'fadD26' "acyl-CoA synthase" tb3373 1,1,3,0 Small-molecule metabolism Degradation Fatty acids Fatty acids 'echA18' "enoyl-CoA hydratase/isomerase superfamily, N-term" tb3513 1,1,3,0 Small-molecule metabolism Degradation Fatty acids Fatty acids 'fadD18' "acyl-CoA synthase" tb3516 1,1,3,0 Small-molecule metabolism Degradation Fatty acids Fatty acids 'echA19' "enoyl-CoA hydratase/isomerase superfamily " Proper test Accuracy: 16/20 (80.00%) Application to new data (498 items): Total: 0 Evaluation on training data (1060 items): tb119 1,1,3,0 Small-molecule metabolism Degradation Fatty acids Fatty acids 'fadD7' "acyl-CoA synthase" tb166 1,1,3,0 Small-molecule metabolism Degradation Fatty acids Fatty acids 'fadD5' "acyl-CoA synthase" tb214 1,1,3,0 Small-molecule metabolism Degradation Fatty acids Fatty acids 'fadD4' "acyl-CoA synthase" tb222 1,1,3,0 Small-molecule metabolism Degradation Fatty acids Fatty acids 'echA1' "enoyl-CoA hydratase/isomerase superfamily " tb270 1,1,3,0 Small-molecule metabolism Degradation Fatty acids Fatty acids 'fadD2' "acyl-CoA synthase" tb404 1,1,3,0 Small-molecule metabolism Degradation Fatty acids Fatty acids 'fadD30' "acyl-CoA synthase" tb456 1,1,3,0 Small-molecule metabolism Degradation Fatty acids Fatty acids 'echA2' "enoyl-CoA hydratase/isomerase superfamily " tb548 - 1,7,11,0 Small-molecule metabolism Biosynthesis of cofactors, prosthetic groups and carriers Menaquinone, PQQ, ubiquinone and other terpenoids Menaquinone, PQQ, ubiquinone and other terpenoids 'menB' "naphthoate synthase" tb551 1,1,3,0 Small-molecule metabolism Degradation Fatty acids Fatty acids 'fadD8' "acyl-CoA synthase" tb632 1,1,3,0 Small-molecule metabolism Degradation Fatty acids Fatty acids 'echA3' "enoyl-CoA hydratase/isomerase superfamily " tb675 1,1,3,0 Small-molecule metabolism Degradation Fatty acids Fatty acids 'echA5' "enoyl-CoA hydratase/isomerase superfamily " tb905 1,1,3,0 Small-molecule metabolism Degradation Fatty acids Fatty acids 'echA6' "enoyl-CoA hydratase/isomerase superfamily (aka eccH)" tb1058 1,1,3,0 Small-molecule metabolism Degradation Fatty acids Fatty acids 'fadD14' "acyl-CoA synthase" tb1070 1,1,3,0 Small-molecule metabolism Degradation Fatty acids Fatty acids 'echA8' "enoyl-CoA hydratase/isomerase superfamily " tb1071 1,1,3,0 Small-molecule metabolism Degradation Fatty acids Fatty acids 'echA9' "enoyl-CoA hydratase/isomerase superfamily " tb1141 1,1,3,0 Small-molecule metabolism Degradation Fatty acids Fatty acids 'echA11' "enoyl-CoA hydratase/isomerase superfamily" tb1142 1,1,3,0 Small-molecule metabolism Degradation Fatty acids Fatty acids 'echA10' "enoyl-CoA hydratase/isomerase superfamily" tb1185 1,1,3,0 Small-molecule metabolism Degradation Fatty acids Fatty acids 'fadD21' "acyl-CoA synthase" tb1193 1,1,3,0 Small-molecule metabolism Degradation Fatty acids Fatty acids 'fadD36' "acyl-CoA synthase" tb1345 1,1,3,0 Small-molecule metabolism Degradation Fatty acids Fatty acids 'fadD33' "acyl-CoA synthase" tb1427 1,1,3,0 Small-molecule metabolism Degradation Fatty acids Fatty acids 'fadD12' "acyl-CoA synthase" tb1472 1,1,3,0 Small-molecule metabolism Degradation Fatty acids Fatty acids 'echA12' "enoyl-CoA hydratase/isomerase superfamily" tb1529 1,1,3,0 Small-molecule metabolism Degradation Fatty acids Fatty acids 'fadD24' "acyl-CoA synthase" tb1549 1,1,3,0 Small-molecule metabolism Degradation Fatty acids Fatty acids 'fadD11' "null" tb1683 1,1,3,0 Small-molecule metabolism Degradation Fatty acids Fatty acids 'null' "null" tb1750 1,1,3,0 Small-molecule metabolism Degradation Fatty acids Fatty acids 'fadD1' "acyl-CoA synthase" tb1925 1,1,3,0 Small-molecule metabolism Degradation Fatty acids Fatty acids 'fadD31' "acyl-CoA synthase" tb1935 1,1,3,0 Small-molecule metabolism Degradation Fatty acids Fatty acids 'echA13' "enoyl-CoA hydratase/isomerase superfamily " tb2505 1,1,3,0 Small-molecule metabolism Degradation Fatty acids Fatty acids 'fadD35' "acyl-CoA synthase" Training Accuracy: 28/29 (96.55%) Evaluation on test data (531 items): tb2941 1,1,3,0 Small-molecule metabolism Degradation Fatty acids Fatty acids 'fadD28' "acyl-CoA synthase" tb2948 1,1,3,0 Small-molecule metabolism Degradation Fatty acids Fatty acids 'fadD22' "acyl-CoA synthase" tb2950 1,1,3,0 Small-molecule metabolism Degradation Fatty acids Fatty acids 'fadD29' "acyl-CoA synthase" tb3039 1,1,3,0 Small-molecule metabolism Degradation Fatty acids Fatty acids 'echA17' "enoyl-CoA hydratase/isomerase superfamily" tb3089 1,1,3,0 Small-molecule metabolism Degradation Fatty acids Fatty acids 'fadD13' "acyl-CoA synthase" tb3506 1,1,3,0 Small-molecule metabolism Degradation Fatty acids Fatty acids 'fadD17' "acyl-CoA synthase" tb3550 1,1,3,0 Small-molecule metabolism Degradation Fatty acids Fatty acids 'echA20' "enoyl-CoA hydratase/isomerase superfamily" tb3561 1,1,3,0 Small-molecule metabolism Degradation Fatty acids Fatty acids 'fadD3' "acyl-CoA synthase" tb3667 1,1,3,0 Small-molecule metabolism Degradation Fatty acids Fatty acids 'acs' "acetyl-CoA synthase" tb3774 1,1,3,0 Small-molecule metabolism Degradation Fatty acids Fatty acids 'echA21' "enoyl-CoA hydratase/isomerase superfamily" tb3801 1,1,3,0 Small-molecule metabolism Degradation Fatty acids Fatty acids 'fadD32' "acyl-CoA synthase" tb3826 1,1,3,0 Small-molecule metabolism Degradation Fatty acids Fatty acids 'fadD23' "acyl-CoA synthase" Test Accuracy: 12/12 (100.00%) Application to new data (1023 items): Total: 0 ------------------ Rule 5: (13/6, lift 10.7) [hom( A ),keyword( A ,transmembrane),amino_acid_ratio_rule(e,4)] = 1 [hom( A ),species( A ,homo_sapiens),amino_acid_ratio_rule(w,1),classification( A ,eukaryota),e_val_rule( A ,1),classification( A ,metazoa)] = 0 [hom( A ),classification( A ,bacteria),classification( A ,firmicutes),classification( A ,bacillus),classification( A ,bacillaceae),e_val_rule( A ,1),amino_acid_ratio_rule(k,2)] = 1 -> class 'function3(Fatty acids )' [0.533] Evaluation on proper test data (811 items): tb35 1,1,3,0 Small-molecule metabolism Degradation Fatty acids Fatty acids 'fadD34' "acyl-CoA synthase" tb99 1,1,3,0 Small-molecule metabolism Degradation Fatty acids Fatty acids 'fadD10' "acyl-CoA synthase" tb271 1,1,3,0 Small-molecule metabolism Degradation Fatty acids Fatty acids 'fadE6' "acyl-CoA dehydrogenase " tb672 1,1,3,0 Small-molecule metabolism Degradation Fatty acids Fatty acids 'fadE8' "acyl-CoA dehydrogenase (aka aidB)" tb1013 - 1,9,0,0 Small-molecule metabolism Polyketide and non-ribosomal peptide synthesis Polyketide and non-ribosomal peptide synthesis Polyketide and non-ribosomal peptide synthesis 'pks16' "polyketide synthase " tb1511 - 1,3,3,0 Small-molecule metabolism Central intermediary metabolism Sugar nucleotides Sugar nucleotides 'gmdA' "GDP-mannose 4,6 dehydratase" tb1552 - 1,2,6,2 Small-molecule metabolism Energy Metabolism Respiration anaerobic 'frdA' "fumarate reductase flavoprotein subunit" tb1777 - 4,6,0,0 Other Cytochrome P450 enzymes Cytochrome P450 enzymes Cytochrome P450 enzymes 'null' "null" tb2038 - 3,1,3,0 Cell Processes Transport/binding proteins Carbohydrates, organic acids and alcohols Carbohydrates, organic acids and alcohols 'null' "null" tb2524 - 1,8,1,0 Small-molecule metabolism Lipid Biosynthesis Synthesis of fatty and mycolic acids Synthesis of fatty and mycolic acids 'fas' "fatty acid synthase" tb3398 - 1,7,11,0 Small-molecule metabolism Biosynthesis of cofactors, prosthetic groups and carriers Menaquinone, PQQ, ubiquinone and other terpenoids Menaquinone, PQQ, ubiquinone and other terpenoids 'idsA' "geranylgeranyl pyrophosphate synthase" tb3573 1,1,3,0 Small-molecule metabolism Degradation Fatty acids Fatty acids 'fadE34' "acyl-CoA dehydrogenase " tb3797 1,1,3,0 Small-molecule metabolism Degradation Fatty acids Fatty acids 'fadE35' "acyl-CoA dehydrogenase " tb3918 - 3,3,0,0 Cell Processes Cell division Cell division Cell division 'parB' "possibly involved in chromosome partitioning" Proper test Accuracy: 6/14 (42.86%) Application to new data (498 items): tb2752 - 5,0,0,0 Conserved hypotheticals Conserved hypotheticals Conserved hypotheticals Conserved hypotheticals 'null' "null" Total: 1 Evaluation on training data (1060 items): tb154 1,1,3,0 Small-molecule metabolism Degradation Fatty acids Fatty acids 'fadE2' "acyl-CoA dehydrogenase " tb1058 1,1,3,0 Small-molecule metabolism Degradation Fatty acids Fatty acids 'fadD14' "acyl-CoA synthase" tb1175 1,1,3,0 Small-molecule metabolism Degradation Fatty acids Fatty acids 'fadH' "2,4-Dienoyl-CoA Reductase" tb1185 1,1,3,0 Small-molecule metabolism Degradation Fatty acids Fatty acids 'fadD21' "acyl-CoA synthase" tb1281 - 3,1,1,0 Cell Processes Transport/binding proteins Amino acids Amino acids 'oppD' "probable peptide transport protein" tb1340 - 2,2,1,0 Macromolecule metabolism Degradation of macromolecules RNA RNA 'rphA' "ribonuclease PH" tb1346 1,1,3,0 Small-molecule metabolism Degradation Fatty acids Fatty acids 'fadE14' "acyl-CoA dehydrogenase " tb1449 - 1,2,5,0 Small-molecule metabolism Energy Metabolism Pentose phosphate pathway Pentose phosphate pathway 'tkt' "transketolase" tb1473 - 2,3,5,0 Macromolecule metabolism Cell envelope Other membrane proteins Other membrane proteins 'null' "null" tb1529 1,1,3,0 Small-molecule metabolism Degradation Fatty acids Fatty acids 'fadD24' "acyl-CoA synthase" tb2505 1,1,3,0 Small-molecule metabolism Degradation Fatty acids Fatty acids 'fadD35' "acyl-CoA synthase" tb2535 - 2,2,3,0 Macromolecule metabolism Degradation of macromolecules Proteins, peptides and glycopeptides Proteins, peptides and glycopeptides 'pepQ' "cytoplasmic peptidase" tb2564 - 3,1,1,0 Cell Processes Transport/binding proteins Amino acids Amino acids 'glnQ' "probable ATP-binding transport protein" Training Accuracy: 7/13 (53.85%) Evaluation on test data (531 items): tb2861 - 2,2,3,0 Macromolecule metabolism Degradation of macromolecules Proteins, peptides and glycopeptides Proteins, peptides and glycopeptides 'mapA1' "methionine aminopeptidase" tb2948 1,1,3,0 Small-molecule metabolism Degradation Fatty acids Fatty acids 'fadD22' "acyl-CoA synthase" tb2950 1,1,3,0 Small-molecule metabolism Degradation Fatty acids Fatty acids 'fadD29' "acyl-CoA synthase" tb3061 1,1,3,0 Small-molecule metabolism Degradation Fatty acids Fatty acids 'fadE22' "acyl-CoA dehydrogenase " tb3121 - 4,6,0,0 Other Cytochrome P450 enzymes Cytochrome P450 enzymes Cytochrome P450 enzymes 'null' "null" tb3504 1,1,3,0 Small-molecule metabolism Degradation Fatty acids Fatty acids 'fadE26' "acyl-CoA dehydrogenase " tb3562 1,1,3,0 Small-molecule metabolism Degradation Fatty acids Fatty acids 'fadE31' "acyl-CoA dehydrogenase " tb3667 1,1,3,0 Small-molecule metabolism Degradation Fatty acids Fatty acids 'acs' "acetyl-CoA synthase" Test Accuracy: 6/8 (75.00%) Application to new data (1023 items): tb282 - 5,0,0,0 Conserved hypotheticals Conserved hypotheticals Conserved hypotheticals Conserved hypotheticals 'null' "null" tb3884 - 5,0,0,0 Conserved hypotheticals Conserved hypotheticals Conserved hypotheticals Conserved hypotheticals 'null' "null" Total: 2 ------------------ Rule 6: (10, lift 13.9) [hom( A ),e_val_rule( A ,2),amino_acid_ratio_rule(h,2),species( A ,saccharomyces_cerevisiae)] = 1 [hom( A ),classification( A ,bacteria),classification( A ,proteobacteria),keyword( A ,transmembrane),mol_wt_rule( A ,4)] = 0 [hom( A ),classification( A ,bacteria),classification( A ,proteobacteria),keyword( A ,plasmid),amino_acid_ratio_rule(g,5),classification( A ,gamma_subdivision)] = 1 [hom( A ),classification( A ,bacteria),classification( A ,firmicutes),classification( A ,bacillus),classification( A ,bacillaceae),e_val_rule( A ,1),amino_acid_ratio_rule(k,2)] = 0 [hom( A ),classification( A ,bacteria),classification( A ,proteobacteria),classification( A ,gamma_subdivision),classification( A ,enterobacteriaceae),e_val_rule( A ,1),mol_wt_rule( A ,3)] = 0 -> class 'function3(Miscellaneous oxidoreductases and oxygenases; )' [0.917] Evaluation on proper test data (811 items): tb252 - 1,2,6,2 Small-molecule metabolism Energy Metabolism Respiration anaerobic 'nirB' "nitrite reductase flavoprotein" tb484 1,2,7,0 Small-molecule metabolism Energy Metabolism Miscellaneous oxidoreductases and oxygenases; Miscellaneous oxidoreductases and oxygenases; 'null' "null" tb1483 - 1,8,1,0 Small-molecule metabolism Lipid Biosynthesis Synthesis of fatty and mycolic acids Synthesis of fatty and mycolic acids 'fabG1' "3-oxoacyl-[ACP] reductase (aka MabA)" tb2002 - 1,8,1,0 Small-molecule metabolism Lipid Biosynthesis Synthesis of fatty and mycolic acids Synthesis of fatty and mycolic acids 'fabG3' "3-oxoacyl-[ACP] reductase" tb2129 1,2,7,0 Small-molecule metabolism Energy Metabolism Miscellaneous oxidoreductases and oxygenases; Miscellaneous oxidoreductases and oxygenases; 'null' "null" tb2971 1,2,7,0 Small-molecule metabolism Energy Metabolism Miscellaneous oxidoreductases and oxygenases; Miscellaneous oxidoreductases and oxygenases; 'null' "null" tb3086 1,2,7,0 Small-molecule metabolism Energy Metabolism Miscellaneous oxidoreductases and oxygenases; Miscellaneous oxidoreductases and oxygenases; 'adhD' "zinc-containing alcohol dehydrogenase" tb3375 - 4,9,0,0 Other Miscellaneous phosphatases, lyases, and hydrolases Miscellaneous phosphatases, lyases, and hydrolases Miscellaneous phosphatases, lyases, and hydrolases 'amiD' "probable amidase, v. similar MTCY50.19 " tb3485 1,2,7,0 Small-molecule metabolism Energy Metabolism Miscellaneous oxidoreductases and oxygenases; Miscellaneous oxidoreductases and oxygenases; 'null' "null" tb3548 1,2,7,0 Small-molecule metabolism Energy Metabolism Miscellaneous oxidoreductases and oxygenases; Miscellaneous oxidoreductases and oxygenases; 'null' "null" Proper test Accuracy: 6/10 (60.00%) Application to new data (498 items): Total: 0 Evaluation on training data (1060 items): tb687 1,2,7,0 Small-molecule metabolism Energy Metabolism Miscellaneous oxidoreductases and oxygenases; Miscellaneous oxidoreductases and oxygenases; 'null' "null" tb761 1,2,7,0 Small-molecule metabolism Energy Metabolism Miscellaneous oxidoreductases and oxygenases; Miscellaneous oxidoreductases and oxygenases; 'adhB' "zinc-containing alcohol dehydrogenase" tb765 1,2,7,0 Small-molecule metabolism Energy Metabolism Miscellaneous oxidoreductases and oxygenases; Miscellaneous oxidoreductases and oxygenases; 'null' "null" tb1245 1,2,7,0 Small-molecule metabolism Energy Metabolism Miscellaneous oxidoreductases and oxygenases; Miscellaneous oxidoreductases and oxygenases; 'null' "null" tb1454 1,2,7,0 Small-molecule metabolism Energy Metabolism Miscellaneous oxidoreductases and oxygenases; Miscellaneous oxidoreductases and oxygenases; 'qor' "Probable quinone oxidoreductase" tb1812 1,2,7,0 Small-molecule metabolism Energy Metabolism Miscellaneous oxidoreductases and oxygenases; Miscellaneous oxidoreductases and oxygenases; 'null' "null" tb1817 1,2,7,0 Small-molecule metabolism Energy Metabolism Miscellaneous oxidoreductases and oxygenases; Miscellaneous oxidoreductases and oxygenases; 'null' "null" tb1865 1,2,7,0 Small-molecule metabolism Energy Metabolism Miscellaneous oxidoreductases and oxygenases; Miscellaneous oxidoreductases and oxygenases; 'null' "null" tb1928 1,2,7,0 Small-molecule metabolism Energy Metabolism Miscellaneous oxidoreductases and oxygenases; Miscellaneous oxidoreductases and oxygenases; 'null' "null" tb1941 1,2,7,0 Small-molecule metabolism Energy Metabolism Miscellaneous oxidoreductases and oxygenases; Miscellaneous oxidoreductases and oxygenases; 'null' "null" Training Accuracy: 10/10 (100.00%) Evaluation on test data (531 items): tb2987 - 1,4,7,0 Small-molecule metabolism Amino acid biosynthesis Branched amino acid family Branched amino acid family 'leuD' "3-isopropylmalate dehydratase small subunit" tb3045 1,2,7,0 Small-molecule metabolism Energy Metabolism Miscellaneous oxidoreductases and oxygenases; Miscellaneous oxidoreductases and oxygenases; 'adhC' "alcohol dehydrogenase" tb3085 1,2,7,0 Small-molecule metabolism Energy Metabolism Miscellaneous oxidoreductases and oxygenases; Miscellaneous oxidoreductases and oxygenases; 'null' "null" tb3530 - 2,2,6,0 Macromolecule metabolism Degradation of macromolecules Aromatic hydrocarbons Aromatic hydrocarbons 'null' "null" tb3608 - 1,7,2,0 Small-molecule metabolism Biosynthesis of cofactors, prosthetic groups and carriers Folic acid Folic acid 'folP' "dihydropteroate synthase" Test Accuracy: 2/5 (40.00%) Application to new data (1023 items): tb2307 - 5,0,0,0 Conserved hypotheticals Conserved hypotheticals Conserved hypotheticals Conserved hypotheticals 'null' "null" Total: 1 ------------------ Rule 10: (10/1, lift 12.6) amino_acid_pair_ratio_dc <= 1.4 amino_acid_pair_ratio_fk <= 4.1 [hom( A ),mol_wt_rule( A ,2),amino_acid_ratio_rule(q,3)] = 0 [hom( A ),species( A ,mycobacterium_tuberculosis),mol_wt_rule( A ,3),keyword( A ,transmembrane)] = 0 [hom( A ),e_val_rule( A ,2),amino_acid_ratio_rule(h,2),species( A ,saccharomyces_cerevisiae)] = 0 [hom( A ),e_val_rule( A ,3),amino_acid_ratio_rule(s,4),classification( A ,bacteria),mol_wt_rule( A ,3)] = 1 [hom( A ),classification( A ,bacteria),classification( A ,proteobacteria),e_val_rule( A ,1),amino_acid_ratio_rule(x,5)] = 0 [hom( A ),classification( A ,bacteria),classification( A ,proteobacteria),keyword( A ,transmembrane),mol_wt_rule( A ,4)] = 0 [hom( A ),classification( A ,bacteria),classification( A ,proteobacteria),classification( A ,gamma_subdivision),classification( A ,enterobacteriaceae),e_val_rule( A ,1),mol_wt_rule( A ,3)] = 0 -> class 'function3(Miscellaneous oxidoreductases and oxygenases; )' [0.833] Evaluation on proper test data (811 items): tb561 1,2,7,0 Small-molecule metabolism Energy Metabolism Miscellaneous oxidoreductases and oxygenases; Miscellaneous oxidoreductases and oxygenases; 'null' "null" tb671 - 2,3,1,0 Macromolecule metabolism Cell envelope Lipoproteins Lipoproteins 'lpqP' "probable esterase" tb696 - 4,8,0,0 Other Miscellaneous transferases Miscellaneous transferases Miscellaneous transferases 'null' "null" tb766 - 4,6,0,0 Other Cytochrome P450 enzymes Cytochrome P450 enzymes Cytochrome P450 enzymes 'null' "null" tb816 - 1,7,10,0 Small-molecule metabolism Biosynthesis of cofactors, prosthetic groups and carriers Thioredoxin, glutaredoxin and mycothiol Thioredoxin, glutaredoxin and mycothiol 'thiX' "equivalent to M. leprae ThiX" tb906 - 2,3,5,0 Macromolecule metabolism Cell envelope Other membrane proteins Other membrane proteins 'null' "null" tb1326 - 2,1,8,0 Macromolecule metabolism Synthesis and modification of macromolecules Polysaccharides Polysaccharides 'glgB' "1,4-alpha-glucan branching enzyme" tb1869 1,2,7,0 Small-molecule metabolism Energy Metabolism Miscellaneous oxidoreductases and oxygenases; Miscellaneous oxidoreductases and oxygenases; 'null' "null" tb2266 - 4,6,0,0 Other Cytochrome P450 enzymes Cytochrome P450 enzymes Cytochrome P450 enzymes 'null' "null" tb2322 - 1,1,2,0 Small-molecule metabolism Degradation Amino acids and amines Amino acids and amines 'rocD1' "ornithine aminotransferase" tb2485 - 2,2,5,0 Macromolecule metabolism Degradation of macromolecules Esterases and lipases Esterases and lipases 'lipQ' "probable carboxlyesterase" tb2610 - 4,8,0,0 Other Miscellaneous transferases Miscellaneous transferases Miscellaneous transferases 'null' "null" tb3214 - 1,7,14,0 Small-molecule metabolism Biosynthesis of cofactors, prosthetic groups and carriers Iron utilisation Iron utilisation 'entD' "weak similarity to many phosphoglycerate mutases" tb3522 - 1,10,1,0 Small-molecule metabolism Broad regulatory functions Repressors/activators Repressors/activators 'null' "null" tb3554 - 1,2,6,3 Small-molecule metabolism Energy Metabolism Respiration Electron transport 'fdxB' "ferredoxin" tb3725 1,2,7,0 Small-molecule metabolism Energy Metabolism Miscellaneous oxidoreductases and oxygenases; Miscellaneous oxidoreductases and oxygenases; 'null' "null" Proper test Accuracy: 3/16 (18.75%) Application to new data (498 items): tb1504 - 5,0,0,0 Conserved hypotheticals Conserved hypotheticals Conserved hypotheticals Conserved hypotheticals 'null' "null" tb2961 - 5,0,0,0 Conserved hypotheticals Conserved hypotheticals Conserved hypotheticals Conserved hypotheticals 'null' "null" Total: 2 Evaluation on training data (1060 items): tb63 1,2,7,0 Small-molecule metabolism Energy Metabolism Miscellaneous oxidoreductases and oxygenases; Miscellaneous oxidoreductases and oxygenases; 'null' "null" tb161 1,2,7,0 Small-molecule metabolism Energy Metabolism Miscellaneous oxidoreductases and oxygenases; Miscellaneous oxidoreductases and oxygenases; 'null' "null" tb242 - 1,8,1,0 Small-molecule metabolism Lipid Biosynthesis Synthesis of fatty and mycolic acids Synthesis of fatty and mycolic acids 'fabG4' "3-oxoacyl-[ACP] reductase" tb547 1,2,7,0 Small-molecule metabolism Energy Metabolism Miscellaneous oxidoreductases and oxygenases; Miscellaneous oxidoreductases and oxygenases; 'null' "null" tb769 1,2,7,0 Small-molecule metabolism Energy Metabolism Miscellaneous oxidoreductases and oxygenases; Miscellaneous oxidoreductases and oxygenases; 'null' "null" tb945 1,2,7,0 Small-molecule metabolism Energy Metabolism Miscellaneous oxidoreductases and oxygenases; Miscellaneous oxidoreductases and oxygenases; 'null' "null" tb1260 1,2,7,0 Small-molecule metabolism Energy Metabolism Miscellaneous oxidoreductases and oxygenases; Miscellaneous oxidoreductases and oxygenases; 'null' "null" tb1771 1,2,7,0 Small-molecule metabolism Energy Metabolism Miscellaneous oxidoreductases and oxygenases; Miscellaneous oxidoreductases and oxygenases; 'null' "null" tb1774 1,2,7,0 Small-molecule metabolism Energy Metabolism Miscellaneous oxidoreductases and oxygenases; Miscellaneous oxidoreductases and oxygenases; 'null' "null" tb2509 1,2,7,0 Small-molecule metabolism Energy Metabolism Miscellaneous oxidoreductases and oxygenases; Miscellaneous oxidoreductases and oxygenases; 'null' "null" Training Accuracy: 9/10 (90.00%) Evaluation on test data (531 items): tb2857 1,2,7,0 Small-molecule metabolism Energy Metabolism Miscellaneous oxidoreductases and oxygenases; Miscellaneous oxidoreductases and oxygenases; 'null' "null" tb2962 - 4,8,0,0 Other Miscellaneous transferases Miscellaneous transferases Miscellaneous transferases 'null' "null" tb3298 - 2,3,1,0 Macromolecule metabolism Cell envelope Lipoproteins Lipoproteins 'lpqC' "similar to MTCI376.03c" tb3502 1,2,7,0 Small-molecule metabolism Energy Metabolism Miscellaneous oxidoreductases and oxygenases; Miscellaneous oxidoreductases and oxygenases; 'null' "null" tb3526 1,2,7,0 Small-molecule metabolism Energy Metabolism Miscellaneous oxidoreductases and oxygenases; Miscellaneous oxidoreductases and oxygenases; 'null' "null" tb3549 1,2,7,0 Small-molecule metabolism Energy Metabolism Miscellaneous oxidoreductases and oxygenases; Miscellaneous oxidoreductases and oxygenases; 'null' "null" tb3804 - 1,8,3,0 Small-molecule metabolism Lipid Biosynthesis Acyltransferases, Mycoloyltransferases, and phospholipid synthesis Acyltransferases, Mycoloyltransferases, and phospholipid synthesis 'fbpA' "antigen 85A, mycolyltransferase" Test Accuracy: 4/7 (57.14%) Application to new data (1023 items): tb1061 - 5,0,0,0 Conserved hypotheticals Conserved hypotheticals Conserved hypotheticals Conserved hypotheticals 'null' "null" tb1324 - 6,0,0,0 Unknowns Unknowns Unknowns Unknowns 'null' "null" tb2257 - 6,0,0,0 Unknowns Unknowns Unknowns Unknowns 'null' "null" tb2731 - 6,0,0,0 Unknowns Unknowns Unknowns Unknowns 'null' "null" tb2744 - 5,0,0,0 Conserved hypotheticals Conserved hypotheticals Conserved hypotheticals Conserved hypotheticals '35kd_ag' "35-kd antigen" tb3032 - 5,0,0,0 Conserved hypotheticals Conserved hypotheticals Conserved hypotheticals Conserved hypotheticals 'null' "null" Total: 6 ------------------ Rule 24: (13, lift 61.8) [hom( A ),species( A ,mycobacterium_tuberculosis),e_val_rule( A ,4)] = 0 [hom( A ),e_val_rule( A ,4),mol_wt_rule( A ,5),classification( A ,bacteria)] = 1 [hom( A ),classification( A ,bacteria),classification( A ,proteobacteria),keyword( A ,transmembrane),mol_wt_rule( A ,4)] = 1 [hom( A ),species( A ,escherichia_coli),amino_acid_ratio_rule(l,5),classification( A ,bacteria),mol_wt_rule( A ,3),classification( A ,proteobacteria)] = 1 -> class 'function3(Two component systems )' [0.933] Evaluation on proper test data (811 items): tb600 1,10,2,0 Small-molecule metabolism Broad regulatory functions Two component systems Two component systems 'null' "null" tb757 1,10,2,0 Small-molecule metabolism Broad regulatory functions Two component systems Two component systems 'phoP' "two-component response regulator" tb1626 1,10,2,0 Small-molecule metabolism Broad regulatory functions Two component systems Two component systems 'null' "null" tb3765 1,10,2,0 Small-molecule metabolism Broad regulatory functions Two component systems Two component systems 'null' "null" Proper test Accuracy: 4/4 (100.00%) Application to new data (498 items): Total: 0 Evaluation on training data (1060 items): tb490 1,10,2,0 Small-molecule metabolism Broad regulatory functions Two component systems Two component systems 'senX3' "sensor histidine kinase" tb491 1,10,2,0 Small-molecule metabolism Broad regulatory functions Two component systems Two component systems 'regX3' "two-component response regulator" tb602 1,10,2,0 Small-molecule metabolism Broad regulatory functions Two component systems Two component systems 'tcrA' "two-component response regulator" tb758 1,10,2,0 Small-molecule metabolism Broad regulatory functions Two component systems Two component systems 'phoR' "sensor histidine kinase" tb844 1,10,2,0 Small-molecule metabolism Broad regulatory functions Two component systems Two component systems 'narL' "two-component response regulator" tb902 1,10,2,0 Small-molecule metabolism Broad regulatory functions Two component systems Two component systems 'null' "null" tb903 1,10,2,0 Small-molecule metabolism Broad regulatory functions Two component systems Two component systems 'null' "null" tb981 1,10,2,0 Small-molecule metabolism Broad regulatory functions Two component systems Two component systems 'null' "null" tb982 1,10,2,0 Small-molecule metabolism Broad regulatory functions Two component systems Two component systems 'null' "null" tb1027 1,10,2,0 Small-molecule metabolism Broad regulatory functions Two component systems Two component systems 'kdpE' "two-component response regulator" tb1028 1,10,2,0 Small-molecule metabolism Broad regulatory functions Two component systems Two component systems 'kdpD' "sensor histidine kinase" tb1033 1,10,2,0 Small-molecule metabolism Broad regulatory functions Two component systems Two component systems 'null' "null" tb2027 1,10,2,0 Small-molecule metabolism Broad regulatory functions Two component systems Two component systems 'null' "null" Training Accuracy: 13/13 (100.00%) Evaluation on test data (531 items): tb3245 1,10,2,0 Small-molecule metabolism Broad regulatory functions Two component systems Two component systems 'mtrB' "sensor histidine kinase" tb3246 1,10,2,0 Small-molecule metabolism Broad regulatory functions Two component systems Two component systems 'mtrA' "two-component response regulator" tb3764 1,10,2,0 Small-molecule metabolism Broad regulatory functions Two component systems Two component systems 'null' "null" Test Accuracy: 3/3 (100.00%) Application to new data (1023 items): Total: 0 ------------------ Rule 25: (7, lift 58.9) [hom( A ),species( A ,mycobacterium_tuberculosis),mol_wt_rule( A ,3),keyword( A ,transmembrane)] = 1 [hom( A ),classification( A ,bacteria),classification( A ,proteobacteria),keyword( A ,plasmid),mol_wt_rule( A ,4)] = 1 -> class 'function3(Two component systems )' [0.889] Evaluation on proper test data (811 items): tb125 - 2,2,3,0 Macromolecule metabolism Degradation of macromolecules Proteins, peptides and glycopeptides Proteins, peptides and glycopeptides 'pepA' "probable serine protease" tb600 1,10,2,0 Small-molecule metabolism Broad regulatory functions Two component systems Two component systems 'null' "null" tb1032 1,10,2,0 Small-molecule metabolism Broad regulatory functions Two component systems Two component systems 'null' "null" tb1858 - 3,1,4,0 Cell Processes Transport/binding proteins Anions Anions 'modB' "transport system permease, molybdate uptake" tb3276 - 1,6,1,0 Small-molecule metabolism Purines, pyrimidines, nucleosides and nucleotides Purine ribonucleotide biosynthesis Purine ribonucleotide biosynthesis 'purK' "phosphoribosylaminoimidazole carboxylase ATPase subunit" Proper test Accuracy: 2/5 (40.00%) Application to new data (498 items): Total: 0 Evaluation on training data (1060 items): tb490 1,10,2,0 Small-molecule metabolism Broad regulatory functions Two component systems Two component systems 'senX3' "sensor histidine kinase" tb601 1,10,2,0 Small-molecule metabolism Broad regulatory functions Two component systems Two component systems 'null' "null" tb758 1,10,2,0 Small-molecule metabolism Broad regulatory functions Two component systems Two component systems 'phoR' "sensor histidine kinase" tb902 1,10,2,0 Small-molecule metabolism Broad regulatory functions Two component systems Two component systems 'null' "null" tb982 1,10,2,0 Small-molecule metabolism Broad regulatory functions Two component systems Two component systems 'null' "null" tb1028 1,10,2,0 Small-molecule metabolism Broad regulatory functions Two component systems Two component systems 'kdpD' "sensor histidine kinase" tb2027 1,10,2,0 Small-molecule metabolism Broad regulatory functions Two component systems Two component systems 'null' "null" Training Accuracy: 7/7 (100.00%) Evaluation on test data (531 items): tb3132 1,10,2,0 Small-molecule metabolism Broad regulatory functions Two component systems Two component systems 'null' "null" tb3220 1,10,2,0 Small-molecule metabolism Broad regulatory functions Two component systems Two component systems 'null' "null" tb3245 1,10,2,0 Small-molecule metabolism Broad regulatory functions Two component systems Two component systems 'mtrB' "sensor histidine kinase" tb3764 1,10,2,0 Small-molecule metabolism Broad regulatory functions Two component systems Two component systems 'null' "null" Test Accuracy: 4/4 (100.00%) Application to new data (1023 items): tb1488 - 5,0,0,0 Conserved hypotheticals Conserved hypotheticals Conserved hypotheticals Conserved hypotheticals 'null' "null" Total: 1 ------------------ Rule 30: (4, lift 88.3) amino_acid_ratio_k <= 4.2 [hom( A ),classification( A ,bacteria),classification( A ,proteobacteria),keyword( A ,transmembrane),mol_wt_rule( A ,4)] = 0 [hom( A ),classification( A ,bacteria),classification( A ,firmicutes),e_val_rule( A ,3),amino_acid_ratio_rule(i,3),classification( A ,actinobacteria)] = 1 [hom( A ),classification( A ,bacteria),classification( A ,firmicutes),mol_wt_rule( A ,1),amino_acid_ratio_rule(e,4),classification( A ,bacillus)] = 1 [hom( A ),classification( A ,bacteria),classification( A ,firmicutes),mol_wt_rule( A ,4),amino_acid_ratio_rule(e,4),classification( A ,actinobacteria)] = 0 [hom( A ),species( A ,haemophilus_influenzae),amino_acid_ratio_rule(h,2),classification( A ,bacteria),e_val_rule( A ,1),classification( A ,proteobacteria)] = 0 [hom( A ),species( A ,homo_sapiens),amino_acid_ratio_rule(w,1),classification( A ,eukaryota),e_val_rule( A ,1),classification( A ,metazoa)] = 0 -> class 'function3(RNA synthesis_ RNA modification and DNA transcription )' [0.833] Evaluation on proper test data (811 items): tb252 - 1,2,6,2 Small-molecule metabolism Energy Metabolism Respiration anaerobic 'nirB' "nitrite reductase flavoprotein" tb324 - 1,10,1,0 Small-molecule metabolism Broad regulatory functions Repressors/activators Repressors/activators 'null' "null" tb1285 - 1,3,5,0 Small-molecule metabolism Central intermediary metabolism Sulphur metabolism Sulphur metabolism 'cysD' "ATP:sulphurylase subunit 2" tb2258 - 1,10,1,0 Small-molecule metabolism Broad regulatory functions Repressors/activators Repressors/activators 'null' "null" Proper test Accuracy: 0/4 (0.00%) Application to new data (498 items): tb2604 - 5,0,0,0 Conserved hypotheticals Conserved hypotheticals Conserved hypotheticals Conserved hypotheticals 'null' "null" Total: 1 Evaluation on training data (1060 items): tb182 2,1,7,0 Macromolecule metabolism Synthesis and modification of macromolecules RNA synthesis, RNA modification and DNA transcription RNA synthesis, RNA modification and DNA transcription 'sigG' "sigma-70 factors ECF subfamily " tb735 2,1,7,0 Macromolecule metabolism Synthesis and modification of macromolecules RNA synthesis, RNA modification and DNA transcription RNA synthesis, RNA modification and DNA transcription 'sigL' "sigma-70 factors ECF subfamily" tb1221 2,1,7,0 Macromolecule metabolism Synthesis and modification of macromolecules RNA synthesis, RNA modification and DNA transcription RNA synthesis, RNA modification and DNA transcription 'sigE' "ECF subfamily sigma subunit" tb1644 2,1,7,0 Macromolecule metabolism Synthesis and modification of macromolecules RNA synthesis, RNA modification and DNA transcription RNA synthesis, RNA modification and DNA transcription 'tsnR' "putative 23S rRNA methyltransferase" Training Accuracy: 4/4 (100.00%) Evaluation on test data (531 items): tb2703 2,1,7,0 Macromolecule metabolism Synthesis and modification of macromolecules RNA synthesis, RNA modification and DNA transcription RNA synthesis, RNA modification and DNA transcription 'sigA' "RNA polymerase sigma factor (aka MysA, RpoV)" tb3082 - 1,10,1,0 Small-molecule metabolism Broad regulatory functions Repressors/activators Repressors/activators 'virS' "putative virulence regulating protein (AraC/XylS family)" tb3414 2,1,7,0 Macromolecule metabolism Synthesis and modification of macromolecules RNA synthesis, RNA modification and DNA transcription RNA synthesis, RNA modification and DNA transcription 'sigD' "ECF subfamily sigma subunit" tb3677 - 4,9,0,0 Other Miscellaneous phosphatases, lyases, and hydrolases Miscellaneous phosphatases, lyases, and hydrolases Miscellaneous phosphatases, lyases, and hydrolases 'null' "null" Test Accuracy: 2/4 (50.00%) Application to new data (1023 items): tb294 - 5,0,0,0 Conserved hypotheticals Conserved hypotheticals Conserved hypotheticals Conserved hypotheticals 'null' "null" tb1324 - 6,0,0,0 Unknowns Unknowns Unknowns Unknowns 'null' "null" Total: 2 ------------------ Rule 31: (8/1, lift 70.7) [amino_acid_ratio_rule(y,1)] = 0 [hom( A ),keyword( A ,repeat)] = 1 [hom( A ),e_val_rule( A ,4),amino_acid_ratio_rule(n,3)] = 0 [hom( A ),e_val_rule( A ,2),amino_acid_ratio_rule(h,2),species( A ,saccharomyces_cerevisiae)] = 0 [hom( A ),mol_wt_rule( A ,4),amino_acid_ratio_rule(a,5),keyword( A ,plasmid)] = 1 [hom( A ),classification( A ,bacteria),classification( A ,proteobacteria),keyword( A ,transmembrane),mol_wt_rule( A ,4)] = 0 [hom( A ),species( A ,haemophilus_influenzae),amino_acid_ratio_rule(h,2),classification( A ,bacteria),e_val_rule( A ,1),classification( A ,proteobacteria)] = 0 [hom( A ),classification( A ,bacteria),classification( A ,firmicutes),classification( A ,bacillus),classification( A ,bacillaceae),e_val_rule( A ,1),amino_acid_ratio_rule(k,2)] = 0 -> class 'function3(Esterases and lipases )' [0.800] Evaluation on proper test data (811 items): tb220 2,2,5,0 Macromolecule metabolism Degradation of macromolecules Esterases and lipases Esterases and lipases 'lipC' "probable esterase" tb688 - 1,2,7,0 Small-molecule metabolism Energy Metabolism Miscellaneous oxidoreductases and oxygenases; Miscellaneous oxidoreductases and oxygenases; 'null' "null" tb973 - 1,1,3,0 Small-molecule metabolism Degradation Fatty acids Fatty acids 'accA2' "acetyl/propionyl-CoA carboxylase, alpha subunit" tb1399 2,2,5,0 Macromolecule metabolism Degradation of macromolecules Esterases and lipases Esterases and lipases 'lipH' "probable lipase" tb1426 2,2,5,0 Macromolecule metabolism Degradation of macromolecules Esterases and lipases Esterases and lipases 'lipO' "probable esterase" tb1479 - 1,10,1,0 Small-molecule metabolism Broad regulatory functions Repressors/activators Repressors/activators 'moxR' "transcriptional regulator, MoxR homologue" tb1869 - 1,2,7,0 Small-molecule metabolism Energy Metabolism Miscellaneous oxidoreductases and oxygenases; Miscellaneous oxidoreductases and oxygenases; 'null' "null" tb2485 2,2,5,0 Macromolecule metabolism Degradation of macromolecules Esterases and lipases Esterases and lipases 'lipQ' "probable carboxlyesterase" Proper test Accuracy: 4/8 (50.00%) Application to new data (498 items): Total: 0 Evaluation on training data (1060 items): tb1076 2,2,5,0 Macromolecule metabolism Degradation of macromolecules Esterases and lipases Esterases and lipases 'lipU' "probable esterase" tb1104 2,2,5,0 Macromolecule metabolism Degradation of macromolecules Esterases and lipases Esterases and lipases 'null' "null" tb1105 2,2,5,0 Macromolecule metabolism Degradation of macromolecules Esterases and lipases Esterases and lipases 'null' "null" tb1400 2,2,5,0 Macromolecule metabolism Degradation of macromolecules Esterases and lipases Esterases and lipases 'lipI' "probable lipase" tb1563 - 2,1,8,0 Macromolecule metabolism Synthesis and modification of macromolecules Polysaccharides Polysaccharides 'glgY' "putative alpha-amylase" tb2045 2,2,5,0 Macromolecule metabolism Degradation of macromolecules Esterases and lipases Esterases and lipases 'lipT' "probable carboxylesterase" tb2284 2,2,5,0 Macromolecule metabolism Degradation of macromolecules Esterases and lipases Esterases and lipases 'lipM' "probable esterase" tb2385 2,2,5,0 Macromolecule metabolism Degradation of macromolecules Esterases and lipases Esterases and lipases 'lipK' "probable acetyl-hydrolase" Training Accuracy: 7/8 (87.50%) Evaluation on test data (531 items): tb2970 2,2,5,0 Macromolecule metabolism Degradation of macromolecules Esterases and lipases Esterases and lipases 'lipN' "probable lipase/esterase" tb3084 2,2,5,0 Macromolecule metabolism Degradation of macromolecules Esterases and lipases Esterases and lipases 'lipR' "probable acetyl-hydrolase" tb3164 - 1,10,1,0 Small-molecule metabolism Broad regulatory functions Repressors/activators Repressors/activators 'moxR3' "transcriptional regulator, MoxR homologue" tb3264 - 1,3,3,0 Small-molecule metabolism Central intermediary metabolism Sugar nucleotides Sugar nucleotides 'rmlA2' "glucose-1-phosphate thymidyltransferase" tb3487 2,2,5,0 Macromolecule metabolism Degradation of macromolecules Esterases and lipases Esterases and lipases 'lipF' "probable esterase" Test Accuracy: 3/5 (60.00%) Application to new data (1023 items): Total: 0 ------------------ Rule 34: (7/1, lift 91.6) [hom( A ),species( A ,mycobacterium_tuberculosis),mol_wt_rule( A ,3),keyword( A ,transmembrane)] = 1 [hom( A ),mol_wt_rule( A ,5),amino_acid_ratio_rule(l,5),e_val_rule( A ,1)] = 1 [hom( A ),classification( A ,bacteria),classification( A ,proteobacteria),keyword( A ,plasmid),mol_wt_rule( A ,4)] = 0 -> class 'function3(Conserved membrane proteins )' [0.778] Evaluation on proper test data (811 items): tb402 2,3,4,0 Macromolecule metabolism Cell envelope Conserved membrane proteins Conserved membrane proteins 'mmpL1' "conserved large membrane protein" tb507 2,3,4,0 Macromolecule metabolism Cell envelope Conserved membrane proteins Conserved membrane proteins 'mmpL2' "conserved large membrane protein" tb1183 2,3,4,0 Macromolecule metabolism Cell envelope Conserved membrane proteins Conserved membrane proteins 'mmpL10' "conserved large membrane protein" tb1917 - 4,3,2,0 Other PE and PPE families PPE family PPE family 'PPE' "null" tb2127 - 3,1,1,0 Cell Processes Transport/binding proteins Amino acids Amino acids 'ansP' "L-asparagine permease" tb2339 2,3,4,0 Macromolecule metabolism Cell envelope Conserved membrane proteins Conserved membrane proteins 'mmpL9' "conserved large membrane protein" tb3448 - 2,3,5,0 Macromolecule metabolism Cell envelope Other membrane proteins Other membrane proteins 'null' "null" Proper test Accuracy: 4/7 (57.14%) Application to new data (498 items): Total: 0 Evaluation on training data (1060 items): tb202 2,3,4,0 Macromolecule metabolism Cell envelope Conserved membrane proteins Conserved membrane proteins 'mmpL11' "conserved large membrane protein" tb206 2,3,4,0 Macromolecule metabolism Cell envelope Conserved membrane proteins Conserved membrane proteins 'mmpL3' "conserved large membrane protein" tb346 - 3,1,1,0 Cell Processes Transport/binding proteins Amino acids Amino acids 'aroP2' "probable aromatic amino acid permease" tb450 2,3,4,0 Macromolecule metabolism Cell envelope Conserved membrane proteins Conserved membrane proteins 'mmpL4' "conserved large membrane protein" tb676 2,3,4,0 Macromolecule metabolism Cell envelope Conserved membrane proteins Conserved membrane proteins 'mmpL5' "conserved large membrane protein" tb1522 2,3,4,0 Macromolecule metabolism Cell envelope Conserved membrane proteins Conserved membrane proteins 'mmpL12' "conserved large membrane protein" tb1557 2,3,4,0 Macromolecule metabolism Cell envelope Conserved membrane proteins Conserved membrane proteins 'mmpL6' "conserved large membrane protein" Training Accuracy: 6/7 (85.71%) Evaluation on test data (531 items): tb2942 2,3,4,0 Macromolecule metabolism Cell envelope Conserved membrane proteins Conserved membrane proteins 'mmpL7' "conserved large membrane protein" tb3823 2,3,4,0 Macromolecule metabolism Cell envelope Conserved membrane proteins Conserved membrane proteins 'mmpL8' "conserved large membrane protein" Test Accuracy: 2/2 (100.00%) Application to new data (1023 items): Total: 0 ------------------ Rule 40: (7/1, lift 82.4) [hom( A ),classification( A ,bacteria),classification( A ,proteobacteria),keyword( A ,transmembrane),mol_wt_rule( A ,4)] = 0 [hom( A ),keyword( A ,transmembrane),amino_acid_ratio_rule(a,5),classification( A ,bacteria),species( A ,escherichia_coli),classification( A ,proteobacteria)] = 1 [hom( A ),species( A ,homo_sapiens),amino_acid_ratio_rule(w,1),classification( A ,eukaryota),e_val_rule( A ,1),classification( A ,metazoa)] = 1 -> class 'function3(Cations )' [0.778] Evaluation on proper test data (811 items): tb84 - 1,2,7,0 Small-molecule metabolism Energy Metabolism Miscellaneous oxidoreductases and oxygenases; Miscellaneous oxidoreductases and oxygenases; 'hycD' "formate hydrogenlyase subunit 4" tb92 3,1,2,0 Cell Processes Transport/binding proteins Cations Cations 'ctpA' "cation-transporting ATPase" tb969 3,1,2,0 Cell Processes Transport/binding proteins Cations Cations 'ctpV' "cation transport ATPase" tb1469 3,1,2,0 Cell Processes Transport/binding proteins Cations Cations 'ctpD' "probable cadmium-transporting ATPase" tb1997 3,1,2,0 Cell Processes Transport/binding proteins Cations Cations 'ctpF' "probable cation transport ATPase " tb3743 3,1,2,0 Cell Processes Transport/binding proteins Cations Cations 'null' "null" Proper test Accuracy: 5/6 (83.33%) Application to new data (498 items): Total: 0 Evaluation on training data (1060 items): tb103 3,1,2,0 Cell Processes Transport/binding proteins Cations Cations 'ctpB' "cation transport ATPase" tb107 3,1,2,0 Cell Processes Transport/binding proteins Cations Cations 'ctpI' "probable magnesium transport ATPase" tb425 3,1,2,0 Cell Processes Transport/binding proteins Cations Cations 'ctpH' "C-terminal region putative cation-transporting ATPase" tb908 3,1,2,0 Cell Processes Transport/binding proteins Cations Cations 'ctpE' "probable cation transport ATPase" tb1030 3,1,2,0 Cell Processes Transport/binding proteins Cations Cations 'kdpB' "potassium-transporting ATPase B chain" tb1992 3,1,2,0 Cell Processes Transport/binding proteins Cations Cations 'ctpG' "probable cation transport ATPase" tb2443 - 3,1,3,0 Cell Processes Transport/binding proteins Carbohydrates, organic acids and alcohols Carbohydrates, organic acids and alcohols 'dctA' "C4-dicarboxylate transport protein" Training Accuracy: 6/7 (85.71%) Evaluation on test data (531 items): tb3270 3,1,2,0 Cell Processes Transport/binding proteins Cations Cations 'ctpC' "cation transport ATPase" Test Accuracy: 1/1 (100.00%) Application to new data (1023 items): tb2435 - 6,0,0,0 Unknowns Unknowns Unknowns Unknowns 'null' "null" Total: 1 ------------------ Rule 41: (8/1, lift 84.8) [hom( A ),e_val_rule( A ,1),amino_acid_ratio_rule(x,5)] = 0 [hom( A ),species( A ,homo_sapiens),e_val_rule( A ,4)] = 0 [hom( A ),classification( A ,bacteria),classification( A ,firmicutes),mol_wt_rule( A ,3)] = 1 [hom( A ),species( A ,mycobacterium_tuberculosis),mol_wt_rule( A ,3),keyword( A ,transmembrane)] = 0 [hom( A ),e_val_rule( A ,2),mol_wt_rule( A ,1),classification( A ,eukaryota)] = 0 [hom( A ),classification( A ,bacteria),classification( A ,proteobacteria),keyword( A ,transmembrane),mol_wt_rule( A ,4)] = 1 [hom( A ),species( A ,escherichia_coli),amino_acid_ratio_rule(l,5),classification( A ,bacteria),mol_wt_rule( A ,3),classification( A ,proteobacteria)] = 1 -> class 'function3(Carbohydrates_ organic acids and alcohols )' [0.800] Evaluation on proper test data (811 items): tb929 - 3,1,4,0 Cell Processes Transport/binding proteins Anions Anions 'pstC2' "membrane-bound component of phosphate transport system" tb930 - 3,1,4,0 Cell Processes Transport/binding proteins Anions Anions 'pstA1' "PstA component of phosphate uptake" tb1237 3,1,3,0 Cell Processes Transport/binding proteins Carbohydrates, organic acids and alcohols Carbohydrates, organic acids and alcohols 'sugB' "sugar transport protein" tb2038 3,1,3,0 Cell Processes Transport/binding proteins Carbohydrates, organic acids and alcohols Carbohydrates, organic acids and alcohols 'null' "null" tb2317 3,1,3,0 Cell Processes Transport/binding proteins Carbohydrates, organic acids and alcohols Carbohydrates, organic acids and alcohols 'uspE' "sugar transport protein" tb2399 - 3,1,4,0 Cell Processes Transport/binding proteins Anions Anions 'cysT' "sulphate transport system permease protein" Proper test Accuracy: 3/6 (50.00%) Application to new data (498 items): tb1354 - 5,0,0,0 Conserved hypotheticals Conserved hypotheticals Conserved hypotheticals Conserved hypotheticals 'null' "null" tb3000 - 5,0,0,0 Conserved hypotheticals Conserved hypotheticals Conserved hypotheticals Conserved hypotheticals 'null' "null" Total: 2 Evaluation on training data (1060 items): tb1200 3,1,3,0 Cell Processes Transport/binding proteins Carbohydrates, organic acids and alcohols Carbohydrates, organic acids and alcohols 'null' "null" tb1236 3,1,3,0 Cell Processes Transport/binding proteins Carbohydrates, organic acids and alcohols Carbohydrates, organic acids and alcohols 'sugA' "membrane protein probably involved in sugar transport" tb1238 3,1,3,0 Cell Processes Transport/binding proteins Carbohydrates, organic acids and alcohols Carbohydrates, organic acids and alcohols 'sugC' "ABC transporter component of sugar uptake system" tb1902 3,1,3,0 Cell Processes Transport/binding proteins Carbohydrates, organic acids and alcohols Carbohydrates, organic acids and alcohols 'nanT' "probable sialic acid transporter " tb2039 3,1,3,0 Cell Processes Transport/binding proteins Carbohydrates, organic acids and alcohols Carbohydrates, organic acids and alcohols 'null' "null" tb2040 3,1,3,0 Cell Processes Transport/binding proteins Carbohydrates, organic acids and alcohols Carbohydrates, organic acids and alcohols 'null' "null" tb2316 3,1,3,0 Cell Processes Transport/binding proteins Carbohydrates, organic acids and alcohols Carbohydrates, organic acids and alcohols 'uspA' "sugar transport protein" tb2398 - 3,1,4,0 Cell Processes Transport/binding proteins Anions Anions 'cysW' "sulphate transport system permease protein" Training Accuracy: 7/8 (87.50%) Evaluation on test data (531 items): tb2832 3,1,3,0 Cell Processes Transport/binding proteins Carbohydrates, organic acids and alcohols Carbohydrates, organic acids and alcohols 'ugpC' "sn-glycerol-3-phosphate transport ATP-binding protein" tb2834 3,1,3,0 Cell Processes Transport/binding proteins Carbohydrates, organic acids and alcohols Carbohydrates, organic acids and alcohols 'ugpE' "sn-glycerol-3-phosphate transport system protein" tb2835 3,1,3,0 Cell Processes Transport/binding proteins Carbohydrates, organic acids and alcohols Carbohydrates, organic acids and alcohols 'ugpA' "sn-glycerol-3-phosphate permease" tb3756 - 3,5,0,0 Cell Processes Adaptations and atypical conditions Adaptations and atypical conditions Adaptations and atypical conditions 'proZ' "transport system permease" tb3757 - 3,5,0,0 Cell Processes Adaptations and atypical conditions Adaptations and atypical conditions Adaptations and atypical conditions 'proW' "transport system permease" Test Accuracy: 3/5 (60.00%) Application to new data (1023 items): tb1043 - 6,0,0,0 Unknowns Unknowns Unknowns Unknowns 'null' "null" Total: 1 ------------------ Rule 44: (5/1, lift 75.7) [hom( A ),species( A ,mycobacterium_tuberculosis),e_val_rule( A ,4)] = 0 [hom( A ),species( A ,homo_sapiens),e_val_rule( A ,4)] = 1 [hom( A ),species( A ,mycobacterium_tuberculosis),mol_wt_rule( A ,3),keyword( A ,transmembrane)] = 0 [hom( A ),classification( A ,bacteria),classification( A ,proteobacteria),keyword( A ,transmembrane),mol_wt_rule( A ,4)] = 1 [hom( A ),species( A ,escherichia_coli),amino_acid_ratio_rule(l,5),classification( A ,bacteria),mol_wt_rule( A ,3),classification( A ,proteobacteria)] = 1 -> class 'function3(Efflux proteins )' [0.714] Evaluation on proper test data (811 items): tb1250 3,1,6,0 Cell Processes Transport/binding proteins Efflux proteins Efflux proteins 'null' "null" tb1672 - 2,3,5,0 Macromolecule metabolism Cell envelope Other membrane proteins Other membrane proteins 'null' "null" tb3476 - 3,1,3,0 Cell Processes Transport/binding proteins Carbohydrates, organic acids and alcohols Carbohydrates, organic acids and alcohols 'kgtP' "sugar transport protein" tb3728 - 2,3,5,0 Macromolecule metabolism Cell envelope Other membrane proteins Other membrane proteins 'null' "null" Proper test Accuracy: 1/4 (25.00%) Application to new data (498 items): Total: 0 Evaluation on training data (1060 items): tb783 3,1,6,0 Cell Processes Transport/binding proteins Efflux proteins Efflux proteins 'null' "null" tb1307 - 1,2,8,0 Small-molecule metabolism Energy Metabolism ATP-proton motive force ATP-proton motive force 'atpH' "ATP synthase delta chain" tb1410 3,1,6,0 Cell Processes Transport/binding proteins Efflux proteins Efflux proteins 'null' "null" tb2333 3,1,6,0 Cell Processes Transport/binding proteins Efflux proteins Efflux proteins 'null' "null" tb2459 3,1,6,0 Cell Processes Transport/binding proteins Efflux proteins Efflux proteins 'null' "null" Training Accuracy: 4/5 (80.00%) Evaluation on test data (531 items): tb2846 3,1,6,0 Cell Processes Transport/binding proteins Efflux proteins Efflux proteins 'efpA' "putative efflux protein" tb3239 - 2,3,5,0 Macromolecule metabolism Cell envelope Other membrane proteins Other membrane proteins 'null' "null" Test Accuracy: 1/2 (50.00%) Application to new data (1023 items): Total: 0 ------------------ Rule 46: (6, lift 32.0) amino_acid_pair_ratio_gm <= 1.5 amino_acid_pair_ratio_lr > 23.3 amino_acid_ratio_k <= 4.2 [hom( A ),e_val_rule( A ,5),amino_acid_ratio_rule(y,1)] = 1 [hom( A ),classification( A ,bacteria),classification( A ,proteobacteria),e_val_rule( A ,1),amino_acid_ratio_rule(x,5)] = 0 -> class 'function3(IS elements )' [0.875] Evaluation on proper test data (811 items): tb709 - 2,1,1,0 Macromolecule metabolism Synthesis and modification of macromolecules Ribosomal protein synthesis and modification Ribosomal protein synthesis and modification 'rpmC' "50S ribosomal protein L29 " tb891 - 1,10,1,0 Small-molecule metabolism Broad regulatory functions Repressors/activators Repressors/activators 'null' "null" tb1370 4,2,1,1 Other IS elements, Repeated sequences, and Phage IS elements IS6110 'IS6110' "null" tb1757 4,2,1,1 Other IS elements, Repeated sequences, and Phage IS elements IS6110 'IS6110' "null" tb1763 4,2,1,1 Other IS elements, Repeated sequences, and Phage IS elements IS6110 'IS6110' "null" tb2105 4,2,1,1 Other IS elements, Repeated sequences, and Phage IS elements IS6110 'IS6110' "null" tb2278 4,2,1,1 Other IS elements, Repeated sequences, and Phage IS elements IS6110 'IS6110' "null" tb2648 4,2,1,1 Other IS elements, Repeated sequences, and Phage IS elements IS6110 'IS6110' "null" tb2815 4,2,1,1 Other IS elements, Repeated sequences, and Phage IS elements IS6110 'IS6110' "null" tb3186 4,2,1,1 Other IS elements, Repeated sequences, and Phage IS elements IS6110 'IS6110' "null" tb3381 4,2,1,1 Other IS elements, Repeated sequences, and Phage IS elements IS6110 'IS6110' "null" Proper test Accuracy: 9/11 (81.82%) Application to new data (498 items): tb2233 - 5,0,0,0 Conserved hypotheticals Conserved hypotheticals Conserved hypotheticals Conserved hypotheticals 'null' "null" tb2843 - 6,0,0,0 Unknowns Unknowns Unknowns Unknowns 'null' "null" tb3361 - 5,0,0,0 Conserved hypotheticals Conserved hypotheticals Conserved hypotheticals Conserved hypotheticals 'null' "null" tb3706 - 6,0,0,0 Unknowns Unknowns Unknowns Unknowns 'null' "null" Total: 4 Evaluation on training data (1060 items): tb795 4,2,1,1 Other IS elements, Repeated sequences, and Phage IS elements IS6110 'IS6110' "null" tb2013 4,2,1,3 Other IS elements, Repeated sequences, and Phage IS elements Others 'IS1607' "transposase" tb2085 4,2,1,3 Other IS elements, Repeated sequences, and Phage IS elements Others 'IS1556' "putative transposase" tb2168 4,2,1,1 Other IS elements, Repeated sequences, and Phage IS elements IS6110 'IS6110' "null" tb2354 4,2,1,1 Other IS elements, Repeated sequences, and Phage IS elements IS6110 'IS6110' "null" tb2480 4,2,1,1 Other IS elements, Repeated sequences, and Phage IS elements IS6110 'IS6110' "null" Training Accuracy: 6/6 (100.00%) Evaluation on test data (531 items): tb2887 - 1,10,1,0 Small-molecule metabolism Broad regulatory functions Repressors/activators Repressors/activators 'null' "null" tb3184 4,2,1,1 Other IS elements, Repeated sequences, and Phage IS elements IS6110 'IS6110' "null" tb3325 4,2,1,1 Other IS elements, Repeated sequences, and Phage IS elements IS6110 'IS6110' "null" tb3474 4,2,1,1 Other IS elements, Repeated sequences, and Phage IS elements IS6110 'IS6110' "null" tb3830 - 1,10,1,0 Small-molecule metabolism Broad regulatory functions Repressors/activators Repressors/activators 'null' "null" Test Accuracy: 3/5 (60.00%) Application to new data (1023 items): tb626 - 5,0,0,0 Conserved hypotheticals Conserved hypotheticals Conserved hypotheticals Conserved hypotheticals 'null' "null" tb1744 - 6,0,0,0 Unknowns Unknowns Unknowns Unknowns 'null' "null" Total: 2 ------------------ Rule 49: (48, lift 21.6) [hom( A ),species( A ,saccharomyces_cerevisiae),amino_acid_ratio_rule(y,1)] = 0 [hom( A ),species( A ,mycobacterium_tuberculosis),mol_wt_rule( A ,1)] = 0 [hom( A ),species( A ,mycobacterium_tuberculosis),mol_wt_rule( A ,3),keyword( A ,transmembrane)] = 1 [hom( A ),e_val_rule( A ,1),amino_acid_ratio_rule(g,5),classification( A ,eukaryota)] = 0 [hom( A ),mol_wt_rule( A ,2),amino_acid_ratio_rule(w,1),species( A ,mycobacterium_tuberculosis)] = 1 -> class 'function3(PE family )' [0.980] Evaluation on proper test data (811 items): tb109 4,3,1,2 Other PE and PPE families PE family PE_PGRS subfamily 'PE_PGRS' "null" tb152 4,3,1,1 Other PE and PPE families PE family PE subfamily 'PE' "null" tb278 4,3,1,2 Other PE and PPE families PE family PE_PGRS subfamily 'PE_PGRS' "null" tb742 4,3,1,2 Other PE and PPE families PE family PE_PGRS subfamily 'PE_PGRS' "null" tb754 4,3,1,2 Other PE and PPE families PE family PE_PGRS subfamily 'PE_PGRS' "null" tb872 4,3,1,2 Other PE and PPE families PE family PE_PGRS subfamily 'PE_PGRS' "null" tb916 4,3,1,1 Other PE and PPE families PE family PE subfamily 'PE' "null" tb1088 4,3,1,1 Other PE and PPE families PE family PE subfamily 'PE' "null" tb1214 4,3,1,1 Other PE and PPE families PE family PE subfamily 'PE' "null" tb1386 4,3,1,1 Other PE and PPE families PE family PE subfamily 'PE' "null" tb1396 4,3,1,2 Other PE and PPE families PE family PE_PGRS subfamily 'PE_PGRS' "null" tb1788 4,3,1,1 Other PE and PPE families PE family PE subfamily 'PE' "null" tb1791 4,3,1,1 Other PE and PPE families PE family PE subfamily 'PE' "null" tb1803 4,3,1,2 Other PE and PPE families PE family PE_PGRS subfamily 'PE_PGRS' "null" tb1983 4,3,1,2 Other PE and PPE families PE family PE_PGRS subfamily 'PE_PGRS' "null" tb1999 - 2,3,5,0 Macromolecule metabolism Cell envelope Other membrane proteins Other membrane proteins 'null' "null" tb2107 4,3,1,1 Other PE and PPE families PE family PE subfamily 'PE' "null" tb2162 4,3,1,2 Other PE and PPE families PE family PE_PGRS subfamily 'PE_PGRS' "null" tb2328 4,3,1,1 Other PE and PPE families PE family PE subfamily 'PE' "null" tb2408 4,3,1,1 Other PE and PPE families PE family PE subfamily 'PE' "null" tb2487 4,3,1,2 Other PE and PPE families PE family PE_PGRS subfamily 'PE_PGRS' "null" tb2591 4,3,1,2 Other PE and PPE families PE family PE_PGRS subfamily 'PE_PGRS' "null" tb2615 4,3,1,1 Other PE and PPE families PE family PE subfamily 'PE' "null" tb2634 4,3,1,2 Other PE and PPE families PE family PE_PGRS subfamily 'PE_PGRS' "null" tb3344 4,3,1,2 Other PE and PPE families PE family PE_PGRS subfamily 'PE_PGRS' "null" tb3388 4,3,1,2 Other PE and PPE families PE family PE_PGRS subfamily 'PE_PGRS' "null" tb3477 4,3,1,1 Other PE and PPE families PE family PE subfamily 'PE' "null" tb3514 4,3,1,2 Other PE and PPE families PE family PE_PGRS subfamily 'PE_PGRS' "null" tb3595 4,3,1,2 Other PE and PPE families PE family PE_PGRS subfamily 'PE_PGRS' "null" tb3650 4,3,1,1 Other PE and PPE families PE family PE subfamily 'PE' "null" tb3652 4,3,1,2 Other PE and PPE families PE family PE_PGRS subfamily 'PE_PGRS' "null" tb3812 4,3,1,2 Other PE and PPE families PE family PE_PGRS subfamily 'PE_PGRS' "null" Proper test Accuracy: 31/32 (96.88%) Application to new data (498 items): tb2366 - 5,0,0,0 Conserved hypotheticals Conserved hypotheticals Conserved hypotheticals Conserved hypotheticals 'null' "null" Total: 1 Evaluation on training data (1060 items): tb124 4,3,1,2 Other PE and PPE families PE family PE_PGRS subfamily 'PE_PGRS' "null" tb151 4,3,1,1 Other PE and PPE families PE family PE subfamily 'PE' "null" tb159 4,3,1,1 Other PE and PPE families PE family PE subfamily 'PE' "null" tb160 4,3,1,1 Other PE and PPE families PE family PE subfamily 'PE' "null" tb279 4,3,1,2 Other PE and PPE families PE family PE_PGRS subfamily 'PE_PGRS' "null" tb285 4,3,1,1 Other PE and PPE families PE family PE subfamily 'PE' "null" tb297 4,3,1,2 Other PE and PPE families PE family PE_PGRS subfamily 'PE_PGRS' "null" tb335 4,3,1,1 Other PE and PPE families PE family PE subfamily 'PE' "null" tb532 4,3,1,2 Other PE and PPE families PE family PE_PGRS subfamily 'PE_PGRS' "null" tb578 4,3,1,2 Other PE and PPE families PE family PE_PGRS subfamily 'PE_PGRS' "null" tb746 4,3,1,2 Other PE and PPE families PE family PE_PGRS subfamily 'PE_PGRS' "null" tb747 4,3,1,2 Other PE and PPE families PE family PE_PGRS subfamily 'PE_PGRS' "null" tb832 4,3,1,2 Other PE and PPE families PE family PE_PGRS subfamily 'PE_PGRS' "null" tb833 4,3,1,2 Other PE and PPE families PE family PE_PGRS subfamily 'PE_PGRS' "null" tb834 4,3,1,2 Other PE and PPE families PE family PE_PGRS subfamily 'PE_PGRS' "null" tb977 4,3,1,2 Other PE and PPE families PE family PE_PGRS subfamily 'PE_PGRS' "null" tb978 4,3,1,2 Other PE and PPE families PE family PE_PGRS subfamily 'PE_PGRS' "null" tb980 4,3,1,2 Other PE and PPE families PE family PE_PGRS subfamily 'PE_PGRS' "null" tb1040 4,3,1,1 Other PE and PPE families PE family PE subfamily 'PE' "null" tb1067 4,3,1,2 Other PE and PPE families PE family PE_PGRS subfamily 'PE_PGRS' "null" tb1068 4,3,1,2 Other PE and PPE families PE family PE_PGRS subfamily 'PE_PGRS' "null" tb1087 4,3,1,2 Other PE and PPE families PE family PE_PGRS subfamily 'PE_PGRS' "null" tb1089 4,3,1,1 Other PE and PPE families PE family PE subfamily 'PE' "null" tb1091 4,3,1,2 Other PE and PPE families PE family PE_PGRS subfamily 'PE_PGRS' "null" tb1169 4,3,1,1 Other PE and PPE families PE family PE subfamily 'PE' "null" tb1172 4,3,1,1 Other PE and PPE families PE family PE subfamily 'PE' "null" tb1195 4,3,1,1 Other PE and PPE families PE family PE subfamily 'PE' "null" tb1243 4,3,1,2 Other PE and PPE families PE family PE_PGRS subfamily 'PE_PGRS' "null" tb1325 4,3,1,2 Other PE and PPE families PE family PE_PGRS subfamily 'PE_PGRS' "null" tb1430 4,3,1,1 Other PE and PPE families PE family PE subfamily 'PE' "null" tb1441 4,3,1,2 Other PE and PPE families PE family PE_PGRS subfamily 'PE_PGRS' "null" tb1450 4,3,1,2 Other PE and PPE families PE family PE_PGRS subfamily 'PE_PGRS' "null" tb1452 4,3,1,2 Other PE and PPE families PE family PE_PGRS subfamily 'PE_PGRS' "null" tb1468 4,3,1,2 Other PE and PPE families PE family PE_PGRS subfamily 'PE_PGRS' "null" tb1646 4,3,1,1 Other PE and PPE families PE family PE subfamily 'PE' "null" tb1651 4,3,1,2 Other PE and PPE families PE family PE_PGRS subfamily 'PE_PGRS' "null" tb1759 4,3,1,2 Other PE and PPE families PE family PE_PGRS subfamily 'PE_PGRS' "wag22, member of the PGRS" tb1768 4,3,1,2 Other PE and PPE families PE family PE_PGRS subfamily 'PE_PGRS' "null" tb1806 4,3,1,1 Other PE and PPE families PE family PE subfamily 'PE' "null" tb1818 4,3,1,2 Other PE and PPE families PE family PE_PGRS subfamily 'PE_PGRS' "null" tb1840 4,3,1,2 Other PE and PPE families PE family PE_PGRS subfamily 'PE_PGRS' "null" tb2098 4,3,1,2 Other PE and PPE families PE family PE_PGRS subfamily 'PE_PGRS' "null" tb2099 4,3,1,2 Other PE and PPE families PE family PE_PGRS subfamily 'PE_PGRS' "null" tb2126 4,3,1,2 Other PE and PPE families PE family PE_PGRS subfamily 'PE_PGRS' "null" tb2340 4,3,1,1 Other PE and PPE families PE family PE subfamily 'PE' "null" tb2396 4,3,1,2 Other PE and PPE families PE family PE_PGRS subfamily 'PE_PGRS' "null" tb2431 4,3,1,1 Other PE and PPE families PE family PE subfamily 'PE' "null" tb2490 4,3,1,2 Other PE and PPE families PE family PE_PGRS subfamily 'PE_PGRS' "null" Training Accuracy: 48/48 (100.00%) Evaluation on test data (531 items): tb2690 - 2,3,5,0 Macromolecule metabolism Cell envelope Other membrane proteins Other membrane proteins 'null' "null" tb2741 4,3,1,2 Other PE and PPE families PE family PE_PGRS subfamily 'PE_PGRS' "null" tb2769 4,3,1,1 Other PE and PPE families PE family PE subfamily 'PE' "null" tb2853 4,3,1,2 Other PE and PPE families PE family PE_PGRS subfamily 'PE_PGRS' "null" tb3345 4,3,1,2 Other PE and PPE families PE family PE_PGRS subfamily 'PE_PGRS' "null" tb3367 4,3,1,2 Other PE and PPE families PE family PE_PGRS subfamily 'PE_PGRS' "null" tb3507 4,3,1,2 Other PE and PPE families PE family PE_PGRS subfamily 'PE_PGRS' "null" tb3508 4,3,1,2 Other PE and PPE families PE family PE_PGRS subfamily 'PE_PGRS' "null" tb3511 4,3,1,2 Other PE and PPE families PE family PE_PGRS subfamily 'PE_PGRS' "null" tb3512 4,3,1,2 Other PE and PPE families PE family PE_PGRS subfamily 'PE_PGRS' "null" tb3590 4,3,1,2 Other PE and PPE families PE family PE_PGRS subfamily 'PE_PGRS' "null" tb3622 4,3,1,1 Other PE and PPE families PE family PE subfamily 'PE' "null" tb3653 4,3,1,2 Other PE and PPE families PE family PE_PGRS subfamily 'PE_PGRS' "null" Test Accuracy: 12/13 (92.31%) Application to new data (1023 items): tb341 - 5,0,0,0 Conserved hypotheticals Conserved hypotheticals Conserved hypotheticals Conserved hypotheticals 'null' "null" tb378 - 5,0,0,0 Conserved hypotheticals Conserved hypotheticals Conserved hypotheticals Conserved hypotheticals 'null' "null" tb1744 - 6,0,0,0 Unknowns Unknowns Unknowns Unknowns 'null' "null" tb2083 - 5,0,0,0 Conserved hypotheticals Conserved hypotheticals Conserved hypotheticals Conserved hypotheticals 'null' "null" tb3616 - 5,0,0,0 Conserved hypotheticals Conserved hypotheticals Conserved hypotheticals Conserved hypotheticals 'null' "null" tb3881 - 5,0,0,0 Conserved hypotheticals Conserved hypotheticals Conserved hypotheticals Conserved hypotheticals 'null' "null" Total: 6 ------------------ Rule 50: (20, lift 44.0) [hom( A ),species( A ,mycobacterium_tuberculosis),mol_wt_rule( A ,1)] = 1 [hom( A ),species( A ,mycobacterium_tuberculosis),mol_wt_rule( A ,3),keyword( A ,transmembrane)] = 1 -> class 'function3(PPE family )' [0.955] Evaluation on proper test data (811 items): tb286 4,3,2,0 Other PE and PPE families PPE family PPE family 'PPE' "null" tb305 4,3,2,0 Other PE and PPE families PPE family PPE family 'PPE' "null" tb1039 4,3,2,0 Other PE and PPE families PPE family PPE family 'PPE' "null" tb1183 - 2,3,4,0 Macromolecule metabolism Cell envelope Conserved membrane proteins Conserved membrane proteins 'mmpL10' "conserved large membrane protein" tb1196 4,3,2,0 Other PE and PPE families PPE family PPE family 'PPE' "null" tb1361 4,3,2,0 Other PE and PPE families PPE family PPE family 'PPE' "null" tb1387 4,3,2,0 Other PE and PPE families PPE family PPE family 'PPE' "null" tb1548 4,3,2,0 Other PE and PPE families PPE family PPE family 'PPE' "null" tb1705 4,3,2,0 Other PE and PPE families PPE family PPE family 'PPE' "null" tb1787 4,3,2,0 Other PE and PPE families PPE family PPE family 'PPE' "null" tb1790 4,3,2,0 Other PE and PPE families PPE family PPE family 'PPE' "null" tb1800 4,3,2,0 Other PE and PPE families PPE family PPE family 'PPE' "null" tb1808 4,3,2,0 Other PE and PPE families PPE family PPE family 'PPE' "null" tb1809 4,3,2,0 Other PE and PPE families PPE family PPE family 'PPE' "null" tb1918 4,3,2,0 Other PE and PPE families PPE family PPE family 'PPE' "null" tb2123 4,3,2,0 Other PE and PPE families PPE family PPE family 'PPE' "null" tb3018 4,3,2,0 Other PE and PPE families PPE family PPE family 'PPE' "null" tb3426 4,3,2,0 Other PE and PPE families PPE family PPE family 'PPE' "null" tb3448 - 2,3,5,0 Macromolecule metabolism Cell envelope Other membrane proteins Other membrane proteins 'null' "null" tb3738 4,3,2,0 Other PE and PPE families PPE family PPE family 'PPE' "null" tb3739 4,3,2,0 Other PE and PPE families PPE family PPE family 'PPE' "null" Proper test Accuracy: 19/21 (90.48%) Application to new data (498 items): Total: 0 Evaluation on training data (1060 items): tb96 4,3,2,0 Other PE and PPE families PPE family PPE family 'PPE' "null" tb256 4,3,2,0 Other PE and PPE families PPE family PPE family 'PPE' "null" tb280 4,3,2,0 Other PE and PPE families PPE family PPE family 'PPE' "null" tb388 4,3,2,0 Other PE and PPE families PPE family PPE family 'PPE' "null" tb442 4,3,2,0 Other PE and PPE families PPE family PPE family 'PPE' "null" tb453 4,3,2,0 Other PE and PPE families PPE family PPE family 'PPE' "null" tb878 4,3,2,0 Other PE and PPE families PPE family PPE family 'PPE' "null" tb915 4,3,2,0 Other PE and PPE families PPE family PPE family 'PPE' "null" tb1135 4,3,2,0 Other PE and PPE families PPE family PPE family 'PPE' "null" tb1168 4,3,2,0 Other PE and PPE families PPE family PPE family 'PPE' "null" tb1706 4,3,2,0 Other PE and PPE families PPE family PPE family 'PPE' "null" tb1753 4,3,2,0 Other PE and PPE families PPE family PPE family 'PPE' "null" tb1789 4,3,2,0 Other PE and PPE families PPE family PPE family 'PPE' "null" tb1801 4,3,2,0 Other PE and PPE families PPE family PPE family 'PPE' "null" tb1802 4,3,2,0 Other PE and PPE families PPE family PPE family 'PPE' "null" tb1807 4,3,2,0 Other PE and PPE families PPE family PPE family 'PPE' "null" tb2108 4,3,2,0 Other PE and PPE families PPE family PPE family 'PPE' "null" tb2352 4,3,2,0 Other PE and PPE families PPE family PPE family 'PPE' "null" tb2430 4,3,2,0 Other PE and PPE families PPE family PPE family 'PPE' "null" tb2608 4,3,2,0 Other PE and PPE families PPE family PPE family 'PPE' "null" Training Accuracy: 20/20 (100.00%) Evaluation on test data (531 items): tb2768 4,3,2,0 Other PE and PPE families PPE family PPE family 'PPE' "null" tb2770 4,3,2,0 Other PE and PPE families PPE family PPE family 'PPE' "null" tb2892 4,3,2,0 Other PE and PPE families PPE family PPE family 'PPE' "null" tb2942 - 2,3,4,0 Macromolecule metabolism Cell envelope Conserved membrane proteins Conserved membrane proteins 'mmpL7' "conserved large membrane protein" tb3021 4,3,2,0 Other PE and PPE families PPE family PPE family 'PPE' "null" tb3022 4,3,2,0 Other PE and PPE families PPE family PPE family 'PPE' "null" tb3125 4,3,2,0 Other PE and PPE families PPE family PPE family 'PPE' "null" tb3135 4,3,2,0 Other PE and PPE families PPE family PPE family 'PPE' "null" tb3136 4,3,2,0 Other PE and PPE families PPE family PPE family 'PPE' "null" tb3144 4,3,2,0 Other PE and PPE families PPE family PPE family 'PPE' "null" tb3159 4,3,2,0 Other PE and PPE families PPE family PPE family 'PPE' "null" tb3425 4,3,2,0 Other PE and PPE families PPE family PPE family 'PPE' "null" tb3429 4,3,2,0 Other PE and PPE families PPE family PPE family 'PPE' "null" tb3478 4,3,2,0 Other PE and PPE families PPE family PPE family 'PPE' "null" tb3532 4,3,2,0 Other PE and PPE families PPE family PPE family 'PPE' "null" tb3533 4,3,2,0 Other PE and PPE families PPE family PPE family 'PPE' "null" tb3539 - 4,3,1,1 Other PE and PPE families PE family PE subfamily 'PE' "null" tb3558 4,3,2,0 Other PE and PPE families PPE family PPE family 'PPE' "null" tb3621 4,3,2,0 Other PE and PPE families PPE family PPE family 'PPE' "null" tb3873 4,3,2,0 Other PE and PPE families PPE family PPE family 'PPE' "null" Test Accuracy: 18/20 (90.00%) Application to new data (1023 items): Total: 0 ------------------ Rule 51: (4, lift 38.4) [hom( A ),species( A ,mycobacterium_tuberculosis),mol_wt_rule( A ,3),keyword( A ,transmembrane)] = 1 [hom( A ),e_val_rule( A ,1),amino_acid_ratio_rule(g,5),classification( A ,eukaryota)] = 1 [hom( A ),mol_wt_rule( A ,5),amino_acid_ratio_rule(l,5),e_val_rule( A ,1)] = 0 -> class 'function3(PPE family )' [0.833] Evaluation on proper test data (811 items): tb84 - 1,2,7,0 Small-molecule metabolism Energy Metabolism Miscellaneous oxidoreductases and oxygenases; Miscellaneous oxidoreductases and oxygenases; 'hycD' "formate hydrogenlyase subunit 4" tb304 4,3,2,0 Other PE and PPE families PPE family PPE family 'PPE' "null" tb305 4,3,2,0 Other PE and PPE families PPE family PPE family 'PPE' "null" tb522 - 3,1,1,0 Cell Processes Transport/binding proteins Amino acids Amino acids 'gabP' "probable 4-amino butyrate transporter" tb755 4,3,2,0 Other PE and PPE families PPE family PPE family 'PPE' "null" tb924 - 3,1,2,0 Cell Processes Transport/binding proteins Cations Cations 'nramp' "transmembrane protein belonging to Nramp family" tb1548 4,3,2,0 Other PE and PPE families PPE family PPE family 'PPE' "null" tb1918 4,3,2,0 Other PE and PPE families PPE family PPE family 'PPE' "null" tb1979 - 2,3,5,0 Macromolecule metabolism Cell envelope Other membrane proteins Other membrane proteins 'null' "null" tb2154 - 3,3,0,0 Cell Processes Cell division Cell division Cell division 'ftsW' "membrane protein (shape determination)" tb2320 - 3,1,1,0 Cell Processes Transport/binding proteins Amino acids Amino acids 'rocE' "arginine/ornithine transporter" tb2519 - 4,3,1,1 Other PE and PPE families PE family PE subfamily 'PE' "null" tb3350 4,3,2,0 Other PE and PPE families PPE family PPE family 'PPE' "null" tb3411 - 1,6,1,0 Small-molecule metabolism Purines, pyrimidines, nucleosides and nucleotides Purine ribonucleotide biosynthesis Purine ribonucleotide biosynthesis 'guaB2' "inosine-5-monophosphate dehydrogenase" Proper test Accuracy: 6/14 (42.86%) Application to new data (498 items): tb20 - 5,0,0,0 Conserved hypotheticals Conserved hypotheticals Conserved hypotheticals Conserved hypotheticals 'null' "null" Total: 1 Evaluation on training data (1060 items): tb355 4,3,2,0 Other PE and PPE families PPE family PPE family 'PPE' "null" tb1753 4,3,2,0 Other PE and PPE families PPE family PPE family 'PPE' "null" tb2353 4,3,2,0 Other PE and PPE families PPE family PPE family 'PPE' "null" tb2356 4,3,2,0 Other PE and PPE families PPE family PPE family 'PPE' "null" Training Accuracy: 4/4 (100.00%) Evaluation on test data (531 items): tb2920 - 3,1,2,0 Cell Processes Transport/binding proteins Cations Cations 'amt' "putative ammonium transporter" tb3152 - 1,2,6,1 Small-molecule metabolism Energy Metabolism Respiration aerobic 'nuoH' "NADH dehydrogenase chain H" tb3159 4,3,2,0 Other PE and PPE families PPE family PPE family 'PPE' "null" tb3253 - 3,1,1,0 Cell Processes Transport/binding proteins Amino acids Amino acids 'null' "null" tb3343 4,3,2,0 Other PE and PPE families PPE family PPE family 'PPE' "null" tb3347 4,3,2,0 Other PE and PPE families PPE family PPE family 'PPE' "null" tb3533 4,3,2,0 Other PE and PPE families PPE family PPE family 'PPE' "null" tb3558 4,3,2,0 Other PE and PPE families PPE family PPE family 'PPE' "null" Test Accuracy: 5/8 (62.50%) Application to new data (1023 items): Total: 0 ------------------