Rule 1123: eval(_1,_2,gte1.1),classification(_2,ostariophysi) = 1 eval(_1,_2,b4.5e-2_1.1),sq_len(_2,b16_344),db_ref(_2,mim) = 1 eval(_1,_2,b0.0_1.0e-8),keyword(_2,inner_membrane),db_ref(_2,prints) = 1 ss(_1,_2,c),coil_len(_2,b3_4) = 1 ss(_1,_2,b),beta_len(_2,b6_7),nss(_2,_3,a) = 0 ss(_1,_2,a),ss(_1,_3,a),alpha_len(_2,b3_6),beta_dist(_1,b0.0_6.1),coil_dist(_1,b6.2_39.5) = 1 seq_aa_rat_pair_w_a <= 0.392 -> class 11/7/0/0 "detoxification" Evaluation on training data (1658 items): ytybr180w 11,7,0,0 "DTR1" "dityrosine transporter" 67,28,0,0 "DTR1" "dityrosine transporter" ytypr198w 11,7,0,0 "SGE1" "drug resistance protein" 67,28,0,0 "SGE1" "drug resistance protein" ytygr224w 11,7,0,0 "AZR1" "strong similarity to drug resistance protein SGE1, YKR105c and YCL069W" 67,28,0,0 "AZR1" "strong similarity to drug resistance protein SGE1, YKR105c and YCL069W" ytycl069w 11,7,0,0 "null" "strong similarity to drug resistance protein SGE1" 67,28,0,0 "null" "strong similarity to drug resistance protein SGE1" ytymr279c 11,7,0,0 "null" "strong similarity to aminotriazole resistance protein" 67,28,0,0 "null" "strong similarity to aminotriazole resistance protein" ytyil121w 11,7,0,0 "null" "similarity to antibiotic resistance proteins" 67,28,0,0 "null" "similarity to antibiotic resistance proteins" ytygr138c 11,7,0,0 "TPO2" "polyamine transport protein" 67,28,0,0 "TPO2" "polyamine transport protein" ytybr008c 11,7,0,0 "FLR1" "fluconazole resistance protein" 67,28,0,0 "FLR1" "fluconazole resistance protein" ytyel065w 11,7,0,0 "SIT1" "probable multidrug resistance protein" 67,28,0,0 "SIT1" "probable multidrug resistance protein" 67,4,1,1 "SIT1" "probable multidrug resistance protein" ytyor273c 11,7,0,0 "TPO4" "polyamine transporter" 67,28,0,0 "TPO4" "polyamine transporter" ytybr043c 11,7,0,0 "null" "similarity to benomyl/methotrexate resistance protein" 67,28,0,0 "null" "similarity to benomyl/methotrexate resistance protein" ytydr119w 11,7,0,0 "null" "similarity to B.subtilis tetracyclin resistance" 67,28,0,0 "null" "similarity to B.subtilis tetracyclin resistance" ytynl065w 11,7,0,0 "AQR1" "similarity to resistance proteins" 67,28,0,0 "AQR1" "similarity to resistance proteins" ytykr105c 11,7,0,0 "null" "strong similarity to SGE1P and hypothetical protein YCL069w" 67,28,0,0 "null" "strong similarity to SGE1P and hypothetical protein YCL069w" ytyml116w 11,7,0,0 "ATR1" "aminotriazole and 4-nitroquinoline resistance protein" 40,2,0,0 "ATR1" "aminotriazole and 4-nitroquinoline resistance protein" 67,28,0,0 "ATR1" "aminotriazole and 4-nitroquinoline resistance protein" Training Accuracy: 15/15 (100.00%) Training Frequency class '11/7/0/0': 42/1658 (2.53%) Evaluation on validation data (856 items): ytypl274w - 1,1,7,0 "SAM3" "high affinity S-adenosylmethionine permease" 67,10,0,0 "SAM3" "high affinity S-adenosylmethionine permease" ytykl217w - 1,5,7,0 "JEN1" "carboxylic acid transporter protein" 67,7,0,0 "JEN1" "carboxylic acid transporter protein" ytymr088c 11,7,0,0 "null" "similarity to multidrug resistance proteins" 67,28,0,0 "null" "similarity to multidrug resistance proteins" ytyjr117w - 14,4,3,3 "STE24" "zinc metallo-protease" 40,7,0,0 "STE24" "zinc metallo-protease" 6,7,0,0 "STE24" "zinc metallo-protease" ytygl084c - 67,7,99,0 "GUP1" "similarity to GUP2P - putative glycerol transporter" ytypr156c 11,7,0,0 "TPO3" "polyamine transporter" 67,28,0,0 "TPO3" "polyamine transporter" ytyhr048w 11,7,0,0 "null" "similarity to multidrug resistance proteins" 67,28,0,0 "null" "similarity to multidrug resistance proteins" ytydl142c - 1,6,1,0 "CRD1" "cardiolipin synthase" ytygr289c - 1,5,7,0 "MAL11" "general alpha-glucoside permease" 67,7,0,0 "MAL11" "general alpha-glucoside permease" ytygr036c - 30,1,0,0 "CAX4" "required for full levels of dolichol-linked oligosaccharides in the endoplasmic reticulum" 6,7,0,0 "CAX4" "required for full levels of dolichol-linked oligosaccharides in the endoplasmic reticulum" Validation Accuracy: 3/10 (30.00%) Validation Frequency class '11/7/0/0': 24/856 (2.80%) Evaluation on propertest data (1309 items): ytyll028w 11,7,0,0 "TPO1" "polyamine transport protein" 67,28,0,0 "TPO1" "polyamine transport protein" ytyhl040c 11,7,0,0 "ARN1" "ferrichrome-type siderophore transporter" 67,28,0,0 "ARN1" "ferrichrome-type siderophore transporter" ytynr055c 11,7,0,0 "HOL1" "member of major facilitator superfamily multidrug-resistance protein subfamily 1" 67,28,0,0 "HOL1" "member of major facilitator superfamily multidrug-resistance protein subfamily 1" ytyjr152w - 40,2,0,0 "DAL5" "allantoate permease" 67,19,0,0 "DAL5" "allantoate permease" 8,19,0,0 "DAL5" "allantoate permease" ytyil120w 11,7,0,0 "QDR1" "similarity to antibiotic resistance proteins" 67,28,0,0 "QDR1" "similarity to antibiotic resistance proteins" ytynr041c - 1,7,1,0 "COQ2" "para-hydroxybenzoate--polyprenyltransferase" 40,16,0,0 "COQ2" "para-hydroxybenzoate--polyprenyltransferase" ytyil049w - 14,4,3,1 "DFG10" "involved in filamentous growth, cell polarity, and cellular elongation" ytyol158c 11,7,0,0 "ENB1" "a gene of the major facilitator superfamily encodes a transporter for enterobactin" 67,28,0,0 "ENB1" "a gene of the major facilitator superfamily encodes a transporter for enterobactin" ytyhr032w 11,7,0,0 "ERC1" "ethionine resistance protein" 67,28,0,0 "ERC1" "ethionine resistance protein" ytyor192c - 1,3,19,0 "null" "strong similarity to Thi10p" 67,16,0,0 "null" "strong similarity to Thi10p" 67,19,0,0 "null" "strong similarity to Thi10p" ytycr075c - 40,7,0,0 "ERS1" "intracellular protein transport protein" 6,4,0,0 "ERS1" "intracellular protein transport protein" 8,99,0,0 "ERS1" "intracellular protein transport protein" ytycl073c 11,7,0,0 "null" "strong similarity to subtelomeric encoded proteins" 67,28,0,0 "null" "strong similarity to subtelomeric encoded proteins" ytypl076w - 1,6,1,0 "GPI2" "N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein" 40,7,0,0 "GPI2" "N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein" ytykr106w 11,7,0,0 "null" "strong similarity to subtelomeric encoded proteins" 67,28,0,0 "null" "strong similarity to subtelomeric encoded proteins" Propertest Accuracy: 8/14 (57.14%) Propertest Frequency class '11/7/0/0': 36/1309 (2.75%) New (unknown) data (856 items): ytymr155w - 99,0,0,0 "null" "weak similarity to E.coli hypothetical protein f402" ytypl264c - 99,0,0,0 "null" "strong similarity to YMR253c" ytyol137w - 99,0,0,0 "null" "weak similarity to tetracycline resistance proteins" ytynl275w - 98,0,0,0 "null" "similarity to human band 3 anion transport protein" ytynl305c - 99,0,0,0 "null" "similarity to C-term. of A.nidulans regulatory protein (qutR)" ytymr034c - 99,0,0,0 "null" "weak similarity to YPR201w" ytydr338c - 99,0,0,0 "null" "similarity to ERC1P" ytybr220c - 99,0,0,0 "null" "similarity to human acetyl-coenzyme A transporter" ------------------ Rule 969: eval(_1,_2,b0.0_1.0e-8),classification(_2,tracheophyta) = 1 yeast_to_yeast(_1,_2,b0.0_2.0e-7),eval(_1,_3,gte1.1),db_ref(_3,tigr) = 1 eval(_1,_2,b0.0_1.0e-8),keyword(_2,inner_membrane),db_ref(_2,prints) = 0 eval(_1,_2,b0.0_1.0e-8),classification(_2,lactobacillaceae),db_ref(_2,prosite) = 1 eval(_1,_2,b0.0_1.0e-8),mol_wt(_2,b1485_38502),classification(_2,actinobacteria) = 0 eval(_1,_2,b0.0_1.0e-8),sq_len(_2,b483_662),classification(_2,euglena) = 0 -> class 5/10/0/0 "aminoacyl-tRNA-synthetases" Evaluation on training data (1658 items): ytyhr020w 5,10,0,0 "null" "strong similarity to human glutamyl-prolyl-tRNA synthetase and fruit fly multifunctional aminoacyl-tRNA synthetase" ytypl104w 40,16,0,0 "MSD1" "aspartate--tRNA ligase, mitochondrial" 5,10,0,0 "MSD1" "aspartate--tRNA ligase, mitochondrial" ytypl040c 40,16,0,0 "ISM1" "isoleucine--tRNA ligase, mitochondrial" 5,10,0,0 "ISM1" "isoleucine--tRNA ligase, mitochondrial" ytyor168w 40,3,0,0 "GLN4" "glutaminyl-tRNA synthetase" 5,10,0,0 "GLN4" "glutaminyl-tRNA synthetase" ytypr047w 40,16,0,0 "MSF1" "phenylalanine--tRNA ligase alpha chain, mitochondrial" 5,10,0,0 "MSF1" "phenylalanine--tRNA ligase alpha chain, mitochondrial" 6,4,0,0 "MSF1" "phenylalanine--tRNA ligase alpha chain, mitochondrial" ytyil078w 1,3,16,0 "THS1" "threonyl tRNA synthetase, cytosolic" 40,3,0,0 "THS1" "threonyl tRNA synthetase, cytosolic" 5,10,0,0 "THS1" "threonyl tRNA synthetase, cytosolic" ytygl245w 5,10,0,0 "null" "strong similarity to glutamine--tRNA ligase" ytypr081c 5,10,0,0 "null" "strong similarity to glycyl-tRNA synthetases" ytydr341c 40,3,0,0 "null" "arginyl-tRNA synthetase, cytosolic" 5,10,0,0 "null" "arginyl-tRNA synthetase, cytosolic" ytypr033c 40,10,0,0 "HTS1" "histidine--tRNA ligase, mitochondrial" 40,3,0,0 "HTS1" "histidine--tRNA ligase, mitochondrial" 5,10,0,0 "HTS1" "histidine--tRNA ligase, mitochondrial" ytylr382c 4,5,5,1 "NAM2" "leucine--tRNA ligase precursor, mitochondrial" 40,16,0,0 "NAM2" "leucine--tRNA ligase precursor, mitochondrial" 5,10,0,0 "NAM2" "leucine--tRNA ligase precursor, mitochondrial" ytyhr019c 5,10,0,0 "DED81" "asparaginyl-tRNA-synthetase" ytygr171c 40,16,0,0 "MSM1" "methionyl-tRNA synthetase" 5,10,0,0 "MSM1" "methionyl-tRNA synthetase" ytygr094w 40,16,0,0 "VAS1" "valyl-tRNA synthetase" 40,3,0,0 "VAS1" "valyl-tRNA synthetase" 5,10,0,0 "VAS1" "valyl-tRNA synthetase" ytyer087w 5,10,0,0 "null" "similarity to E.coli prolyl-tRNA synthetase" ytynl247w 5,10,0,0 "null" "cysteinyl-tRNA synthetase" Training Accuracy: 16/16 (100.00%) Training Frequency class '5/10/0/0': 18/1658 (1.09%) Evaluation on validation data (856 items): ytybl076c 40,3,0,0 "ILS1" "isoleucyl-tRNA synthetase" 5,10,0,0 "ILS1" "isoleucyl-tRNA synthetase" ytypl276w - 2,16,0,0 "null" "identical to a region of YOR388c" ytyal038w - 1,5,1,0 "CDC19" "pyruvate kinase" 2,1,0,0 "CDC19" "pyruvate kinase" 40,3,0,0 "CDC19" "pyruvate kinase" ytyhl008c - 2,16,0,0 "null" "similarity to M.formicicum formate dehydrogenase" ytygr244c - 1,5,1,0 "LSC2" "succinate-CoA ligase beta subunit" 2,10,0,0 "LSC2" "succinate-CoA ligase beta subunit" ytylr060w 40,3,0,0 "FRS1" "phenylalanyl-tRNA synthetase, alpha subunit, cytosolic" 5,10,0,0 "FRS1" "phenylalanyl-tRNA synthetase, alpha subunit, cytosolic" ytygr264c 40,3,0,0 "MES1" "methionyl-tRNA synthetase" 5,10,0,0 "MES1" "methionyl-tRNA synthetase" ytyel011w - 1,5,1,0 "GLC3" "1,4-glucan branching enzyme (glycogen branching enzyme)" 2,19,0,0 "GLC3" "1,4-glucan branching enzyme (glycogen branching enzyme)" 40,3,0,0 "GLC3" "1,4-glucan branching enzyme (glycogen branching enzyme)" Validation Accuracy: 3/8 (37.50%) Validation Frequency class '5/10/0/0': 8/856 (0.93%) Evaluation on propertest data (1309 items): ytygl062w - 1,5,1,0 "PYC1" "pyruvate carboxylase 1" 2,1,0,0 "PYC1" "pyruvate carboxylase 1" 40,3,0,0 "PYC1" "pyruvate carboxylase 1" ytylr300w - 1,5,1,0 "EXG1" "exo-beta-1,3-glucanase (I/II), major isoform" 14,1,0,0 "EXG1" "exo-beta-1,3-glucanase (I/II), major isoform" 14,4,3,3 "EXG1" "exo-beta-1,3-glucanase (I/II), major isoform" 14,4,3,5 "EXG1" "exo-beta-1,3-glucanase (I/II), major isoform" 40,27,0,0 "EXG1" "exo-beta-1,3-glucanase (I/II), major isoform" ytyml096w - 1,1,1,0 "null" "similarity to asparagine synthases" ytypr145w - 1,1,1,0 "ASN1" "asparagine synthetase" 40,3,0,0 "ASN1" "asparagine synthetase" ytypl160w 40,3,0,0 "CDC60" "leucine--tRNA ligase, cytosolic" 5,10,0,0 "CDC60" "leucine--tRNA ligase, cytosolic" ytyol033w 40,16,0,0 "MSE1" "glutamyl-tRNA synthetase, mitochondrial" 5,10,0,0 "MSE1" "glutamyl-tRNA synthetase, mitochondrial" ytylr420w - 1,3,4,0 "URA4" "dihydroorotase" ytyll018c 40,3,0,0 "DPS1" "aspartyl-tRNA synthetase, cytosolic" 5,10,0,0 "DPS1" "aspartyl-tRNA synthetase, cytosolic" ytyor190w - 1,5,1,0 "SPR1" "exo-1,3-beta-glucanase precursor" 14,4,3,5 "SPR1" "exo-1,3-beta-glucanase precursor" 40,1,0,0 "SPR1" "exo-1,3-beta-glucanase precursor" ytyjr109c - 1,1,1,0 "CPA2" "arginine-specific carbamoylphosphate synthase, large chain" 40,3,0,0 "CPA2" "arginine-specific carbamoylphosphate synthase, large chain" ytydr037w 40,3,0,0 "KRS1" "lysyl-tRNA synthetase, cytosolic" 5,10,0,0 "KRS1" "lysyl-tRNA synthetase, cytosolic" ytykl194c 40,16,0,0 "MST1" "threonine--tRNA ligase, mitochondrial" 5,10,0,0 "MST1" "threonine--tRNA ligase, mitochondrial" ytyhr091c 40,16,0,0 "MSR1" "arginyl-tRNA synthetase, mitochondrial" 5,10,0,0 "MSR1" "arginyl-tRNA synthetase, mitochondrial" Propertest Accuracy: 6/13 (46.15%) Propertest Frequency class '5/10/0/0': 11/1309 (0.84%) New (unknown) data (856 items): ytydl238c - 98,0,0,0 "null" "similarity to E.coli hypothetical protein and to chlorohydrolases" ytyjl213w - 99,0,0,0 "null" "similarity to Methanobacterium aryldialkylphosphatase related protein" ytydr109c - 99,0,0,0 "null" "similarity to MPA43P" ------------------ Rule 1078: eval(_1,_2,gte1.1),classification(_2,sus),keyword(_2,repeat) = 0 eval(_1,_2,gte1.1),classification(_2,homo),keyword(_2,transmembrane) = 1 eval(_1,_2,gte1.1),classification(_2,euasterids_ii),db_ref(_2,pir) = 0 eval(_1,_2,gte1.1),classification(_2,zea),db_ref(_2,hssp) = 0 eval(_1,_2,gte1.1),mol_wt(_2,b53922_74079),db_ref(_2,hssp) = 1 eval(_1,_2,gte1.1),mol_wt(_2,b53922_74079),classification(_2,betaherpesvirinae) = 0 eval(_1,_2,gte1.1),sq_len(_2,b483_662),classification(_2,tailed_phages) = 0 eval(_1,_2,b4.0e-4_4.5e-2),classification(_2,delta_subdivision),db_ref(_2,hssp) = 0 eval(_1,_2,b4.0e-4_4.5e-2),sq_len(_2,gte970),classification(_2,solanaceae) = 0 eval(_1,_2,b1.0e-8_4.0e-4),classification(_2,oryza),db_ref(_2,pir) = 0 eval(_1,_2,b0.0_1.0e-8),keyword(_2,inner_membrane),db_ref(_2,prints) = 1 eval(_1,_2,b0.0_1.0e-8),classification(_2,primates),db_ref(_2,pir) = 1 eval(_1,_2,b0.0_1.0e-8),mol_wt(_2,b53922_74079),classification(_2,liliopsida) = 0 eval(_1,_2,b0.0_1.0e-8),sq_len(_2,b344_483),classification(_2,spirochaetaceae) = 0 ss(_1,_2,c),coil_len(_2,b1_3),coil_dist(_1,b45.4_50.5),nss(_2,_3,a),nss(_3,_4,b) = 0 ss(_1,_2,b),ss(_1,_3,a),ss(_1,_4,a),alpha_len(_3,gte14),nss(_2,_4,a) = 1 ss(_1,_2,a),ss(_1,_3,a),alpha_len(_2,b3_6),beta_dist(_1,b0.0_6.1),coil_dist(_1,b6.2_39.5) = 0 cechdeeigagasp_spo_t11Point5_red_bkg > 575 -> class 40/2/0/0 "plasma membrane" Evaluation on training data (1658 items): ytynl268w 1,1,7,0 "LYP1" "lysine-specific high-affinity permease" 40,2,0,0 "LYP1" "lysine-specific high-affinity permease" 67,10,0,0 "LYP1" "lysine-specific high-affinity permease" 8,19,0,0 "LYP1" "lysine-specific high-affinity permease" ytypr201w 40,2,0,0 "ARR3" "involved in arsenite transport" 67,4,1,1 "ARR3" "involved in arsenite transport" ytyfl011w 1,5,7,0 "HXT10" "hexose transporter" 40,2,0,0 "HXT10" "hexose transporter" 67,7,0,0 "HXT10" "hexose transporter" 8,19,0,0 "HXT10" "hexose transporter" ytydl194w 1,5,4,0 "SNF3" "high-affinity glucose transporter/regulatory protein" 1,5,7,0 "SNF3" "high-affinity glucose transporter/regulatory protein" 13,11,3,1 "SNF3" "high-affinity glucose transporter/regulatory protein" 30,1,0,0 "SNF3" "high-affinity glucose transporter/regulatory protein" 40,2,0,0 "SNF3" "high-affinity glucose transporter/regulatory protein" 67,7,0,0 "SNF3" "high-affinity glucose transporter/regulatory protein" 8,19,0,0 "SNF3" "high-affinity glucose transporter/regulatory protein" ytyor348c 1,1,7,0 "PUT4" "proline and gamma-aminobutyrate permease" 40,2,0,0 "PUT4" "proline and gamma-aminobutyrate permease" 67,10,0,0 "PUT4" "proline and gamma-aminobutyrate permease" 8,19,0,0 "PUT4" "proline and gamma-aminobutyrate permease" ytydr536w 1,5,7,0 "STL1" "member of the sugar permease family" 40,2,0,0 "STL1" "member of the sugar permease family" 67,7,0,0 "STL1" "member of the sugar permease family" ytynr072w 1,5,7,0 "HXT17" "sugar transport protein" 40,2,0,0 "HXT17" "sugar transport protein" 67,7,0,0 "HXT17" "sugar transport protein" 8,19,0,0 "HXT17" "sugar transport protein" ytydr046c 1,1,7,0 "BAP3" "valine transporter" 40,2,0,0 "BAP3" "valine transporter" 67,10,0,0 "BAP3" "valine transporter" 8,19,0,0 "BAP3" "valine transporter" ytybr038w 1,5,1,0 "CHS2" "chitin synthase II" 14,4,3,1 "CHS2" "chitin synthase II" 40,2,0,0 "CHS2" "chitin synthase II" ytyor034c - 8,19,0,0 "AKR2" "involved in constitutive endocytosis of STE3P" ytyjl219w 1,5,7,0 "HXT9" "hexose transport protein" 40,2,0,0 "HXT9" "hexose transport protein" 67,7,0,0 "HXT9" "hexose transport protein" 8,19,0,0 "HXT9" "hexose transport protein" ytyir028w 40,2,0,0 "DAL4" "allantoin permease" 67,19,0,0 "DAL4" "allantoin permease" 8,19,0,0 "DAL4" "allantoin permease" ytykr039w 1,1,7,0 "GAP1" "general amino acid permease" 40,2,0,0 "GAP1" "general amino acid permease" 67,10,0,0 "GAP1" "general amino acid permease" 8,19,0,0 "GAP1" "general amino acid permease" ytypl265w 1,1,7,0 "DIP5" "dicarboxylic amino acid permease" 40,2,0,0 "DIP5" "dicarboxylic amino acid permease" 67,10,0,0 "DIP5" "dicarboxylic amino acid permease" ytydr343c 1,5,7,0 "HXT6" "high-affinity hexose transporter" 40,2,0,0 "HXT6" "high-affinity hexose transporter" 67,7,0,0 "HXT6" "high-affinity hexose transporter" 8,19,0,0 "HXT6" "high-affinity hexose transporter" ytygr055w 1,1,1,0 "MUP1" "high affinity methionine permease" 1,1,7,0 "MUP1" "high affinity methionine permease" 40,2,0,0 "MUP1" "high affinity methionine permease" 67,10,0,0 "MUP1" "high affinity methionine permease" 8,19,0,0 "MUP1" "high affinity methionine permease" ytydr345c 1,5,7,0 "HXT3" "low-affinity hexose transporter" 40,2,0,0 "HXT3" "low-affinity hexose transporter" 67,7,0,0 "HXT3" "low-affinity hexose transporter" 8,19,0,0 "HXT3" "low-affinity hexose transporter" ytyel063c 1,1,7,0 "CAN1" "amino acid permease" 40,2,0,0 "CAN1" "amino acid permease" 67,10,0,0 "CAN1" "amino acid permease" 8,19,0,0 "CAN1" "amino acid permease" ytyjr040w 13,1,3,5 "GEF1" "voltage-gated chloride channel protein" 40,2,0,0 "GEF1" "voltage-gated chloride channel protein" 67,4,7,0 "GEF1" "voltage-gated chloride channel protein" 8,19,0,0 "GEF1" "voltage-gated chloride channel protein" ytyhl016c 13,1,1,99 "DUR3" "urea transport protein" 13,1,3,99 "DUR3" "urea transport protein" 40,2,0,0 "DUR3" "urea transport protein" 67,4,1,2 "DUR3" "urea transport protein" 67,4,7,0 "DUR3" "urea transport protein" ytydr033w 11,1,0,0 "MRH1" "membrane protein related to HSP30P" 40,2,0,0 "MRH1" "membrane protein related to HSP30P" ytygl077c 40,2,0,0 "HNM1" "choline permease" 67,10,0,0 "HNM1" "choline permease" 8,19,0,0 "HNM1" "choline permease" ytyhl036w 1,1,1,0 "MUP3" "very low affinity methionine permease" 1,1,7,0 "MUP3" "very low affinity methionine permease" 40,2,0,0 "MUP3" "very low affinity methionine permease" 67,10,0,0 "MUP3" "very low affinity methionine permease" 8,19,0,0 "MUP3" "very low affinity methionine permease" ytygr191w 1,1,7,0 "HIP1" "histidine permease" 13,1,1,1 "HIP1" "histidine permease" 40,2,0,0 "HIP1" "histidine permease" 67,10,0,0 "HIP1" "histidine permease" 67,4,1,1 "HIP1" "histidine permease" 8,16,0,0 "HIP1" "histidine permease" 8,19,0,0 "HIP1" "histidine permease" ytybr298c 1,5,7,0 "MAL31" "maltose permease" 40,2,0,0 "MAL31" "maltose permease" 67,7,0,0 "MAL31" "maltose permease" 8,19,0,0 "MAL31" "maltose permease" ytydl210w 1,2,1,0 "UGA4" "GABA-specific high-affinity permease" 40,2,0,0 "UGA4" "GABA-specific high-affinity permease" 67,10,0,0 "UGA4" "GABA-specific high-affinity permease" 8,19,0,0 "UGA4" "GABA-specific high-affinity permease" ytycr021c 11,1,0,0 "HSP30" "heat shock protein" 13,1,1,3 "HSP30" "heat shock protein" 40,2,0,0 "HSP30" "heat shock protein" ytyol122c 13,1,1,1 "SMF1" "manganese transporter" 40,2,0,0 "SMF1" "manganese transporter" 6,4,0,0 "SMF1" "manganese transporter" 67,4,1,1 "SMF1" "manganese transporter" 8,19,0,0 "SMF1" "manganese transporter" ytyhr092c 1,5,7,0 "HXT4" "moderate- to low-affinity glucose transporter" 40,2,0,0 "HXT4" "moderate- to low-affinity glucose transporter" 67,7,0,0 "HXT4" "moderate- to low-affinity glucose transporter" 8,19,0,0 "HXT4" "moderate- to low-affinity glucose transporter" ytycl025c 1,1,7,0 "AGP1" "asparagine and glutamine permease" 40,2,0,0 "AGP1" "asparagine and glutamine permease" 67,10,0,0 "AGP1" "asparagine and glutamine permease" Training Accuracy: 29/30 (96.67%) Training Frequency class '40/2/0/0': 71/1658 (4.28%) Evaluation on validation data (856 items): ytypl006w - 1,6,99,0 "NCR1" "similarity to human PTC protein involved in nevoid basal cell carcinoma syndrome" ytyer039c - 8,7,0,0 "HVG1" "strong similarity to vanadate resistance protein GOG5P" ytyjl193w - 8,7,0,0 "null" "similarity to SLY41P" ytygl055w - 1,6,1,0 "OLE1" "stearoyl-CoA desaturase" 40,7,0,0 "OLE1" "stearoyl-CoA desaturase" ytybr021w 1,3,4,0 "FUR4" "uracil permease" 40,2,0,0 "FUR4" "uracil permease" 67,16,0,0 "FUR4" "uracil permease" 8,19,0,0 "FUR4" "uracil permease" ytyfl040w - 1,5,7,0 "null" "similarity to yeast glucose transport proteins" 67,7,0,0 "null" "similarity to yeast glucose transport proteins" ytydl199c - 1,5,7,0 "null" "similarity to sugar transporter proteins" 67,7,0,0 "null" "similarity to sugar transporter proteins" ytyjl134w - 1,6,1,0 "LCB3" "sphingoid base-phosphate phosphatase" 11,1,0,0 "LCB3" "sphingoid base-phosphate phosphatase" ytylr081w 1,5,7,0 "GAL2" "galactose (and glucose) permease" 40,2,0,0 "GAL2" "galactose (and glucose) permease" 67,7,0,0 "GAL2" "galactose (and glucose) permease" 8,19,0,0 "GAL2" "galactose (and glucose) permease" ytylr083c - 40,22,0,0 "EMP70" "endosomal protein" 8,7,0,0 "EMP70" "endosomal protein" ytynl270c 1,1,7,0 "ALP1" "high-affinity permease for basic amino acids" 40,2,0,0 "ALP1" "high-affinity permease for basic amino acids" 67,10,0,0 "ALP1" "high-affinity permease for basic amino acids" 8,19,0,0 "ALP1" "high-affinity permease for basic amino acids" Validation Accuracy: 3/11 (27.27%) Validation Frequency class '40/2/0/0': 24/856 (2.80%) Evaluation on propertest data (1309 items): ytylr450w - 1,6,1,0 "HMG2" "3-hydroxy-3-methylglutaryl-coenzyme A reductase 2" 40,7,0,0 "HMG2" "3-hydroxy-3-methylglutaryl-coenzyme A reductase 2" ytyor149c - 14,1,3,99 "SMP3" "protein kinase C pathway protein" 14,4,3,1 "SMP3" "protein kinase C pathway protein" 3,3,1,0 "SMP3" "protein kinase C pathway protein" ytygl225w - 40,8,0,0 "GOG5" "GDP-mannose transporter into the lumen of the Golgi" 67,7,0,0 "GOG5" "GDP-mannose transporter into the lumen of the Golgi" 8,7,0,0 "GOG5" "GDP-mannose transporter into the lumen of the Golgi" ytynr056c - 1,6,13,0 "BIO5" "similarity to choline transport protein HNM1P" 67,10,0,0 "BIO5" "similarity to choline transport protein HNM1P" 67,13,0,0 "BIO5" "similarity to choline transport protein HNM1P" ytynl219c - 1,5,1,0 "ALG9" "mannosyltransferase" 1,6,1,0 "ALG9" "mannosyltransferase" 30,1,0,0 "ALG9" "mannosyltransferase" ytydr160w - 1,1,4,0 "SSY1" "transcriptional regulator of several transporter genes" 4,5,1,4 "SSY1" "transcriptional regulator of several transporter genes" ytyjr158w 1,5,7,0 "HXT16" "member of the hexose transporter family of the major facilitator superfamily [MFS]" 40,2,0,0 "HXT16" "member of the hexose transporter family of the major facilitator superfamily [MFS]" 67,7,0,0 "HXT16" "member of the hexose transporter family of the major facilitator superfamily [MFS]" 8,19,0,0 "HXT16" "member of the hexose transporter family of the major facilitator superfamily [MFS]" ytycr017c - 67,99,0,0 "CWH43" "putative sensor/transporter protein" ytydr342c 1,5,7,0 "HXT7" "high-affinity hexose transporter" 40,2,0,0 "HXT7" "high-affinity hexose transporter" 67,7,0,0 "HXT7" "high-affinity hexose transporter" 8,19,0,0 "HXT7" "high-affinity hexose transporter" ytydl245c 1,5,7,0 "HXT15" "strong similarity to HXT17P and HXT7P" 40,2,0,0 "HXT15" "strong similarity to HXT17P and HXT7P" 67,7,0,0 "HXT15" "strong similarity to HXT17P and HXT7P" ytykl055c - 1,6,99,0 "OAR1" "putative 3-oxoacyl-(acyl carrier protein) reductase" 2,13,0,0 "OAR1" "putative 3-oxoacyl-(acyl carrier protein) reductase" ytybl020w - 3,3,1,0 "RFT1" "nuclear division protein" 40,10,0,0 "RFT1" "nuclear division protein" ytyel069c 1,5,7,0 "HXT13" "high-affinity hexose transporter" 40,2,0,0 "HXT13" "high-affinity hexose transporter" 67,7,0,0 "HXT13" "high-affinity hexose transporter" 8,19,0,0 "HXT13" "high-affinity hexose transporter" ytyil088c - 67,99,0,0 "null" "weak similarity to A.thaliana aminoacid permease AAP4" ytypl231w - 1,6,1,0 "FAS2" "fatty-acyl-CoA synthase, alpha chain" 40,3,0,0 "FAS2" "fatty-acyl-CoA synthase, alpha chain" 6,10,0,0 "FAS2" "fatty-acyl-CoA synthase, alpha chain" ytydr387c - 1,5,7,0 "null" "similarity to ITR1P and ITR2P and E.coli araE" 67,7,0,0 "null" "similarity to ITR1P and ITR2P and E.coli araE" ytykl008c - 14,10,0,0 "LAC1" "protein required with LAG1P for ER-to-Golgi transport of GPI-anchored proteins" ytygl008c 13,1,1,3 "PMA1" "H+-transporting P-type ATPase, major isoform, plasma membrane" 40,2,0,0 "PMA1" "H+-transporting P-type ATPase, major isoform, plasma membrane" 67,4,1,2 "PMA1" "H+-transporting P-type ATPase, major isoform, plasma membrane" 67,50,22,0 "PMA1" "H+-transporting P-type ATPase, major isoform, plasma membrane" ytycr023c - 11,7,0,0 "null" "weak similarity to E.coli tetracycline resistance protein TCR1" 67,99,0,0 "null" "weak similarity to E.coli tetracycline resistance protein TCR1" ytygl104c - 1,5,7,0 "null" "similarity to glucose transport proteins" 67,7,0,0 "null" "similarity to glucose transport proteins" ytybr069c 1,1,7,0 "TAT1" "amino acid permease" 40,2,0,0 "TAT1" "amino acid permease" 67,10,0,0 "TAT1" "amino acid permease" 8,19,0,0 "TAT1" "amino acid permease" Propertest Accuracy: 6/21 (28.57%) Propertest Frequency class '40/2/0/0': 50/1309 (3.82%) New (unknown) data (856 items): ytydr492w - 99,0,0,0 "null" "strong similarity to hypothetical protein YOL002c" ytyjl059w - 98,0,0,0 "YHC3" "may function as a chaperone, similarity to human Batten disease-related protein CLN3" ytymr226c - 98,0,0,0 "null" "similarity to ketoreductases" ytybr004c - 99,0,0,0 "null" "similarity to S.pombe hypothetical protein SPAC18B11.05" ytyol107w - 99,0,0,0 "null" "weak similarity to human PL6 protein" ytygr125w - 99,0,0,0 "null" "similarity to S.pombe hypothetical protein SPAC24H6.11c" ytybr187w - 99,0,0,0 "null" "similarity to mouse putative transmembrane protein FT27" ytynl321w - 99,0,0,0 "null" "weak similarity to VCX1P" ytylr414c - 99,0,0,0 "null" "weak similarity to YLR413w" ytyml038c - 99,0,0,0 "YMD8" "similarity to vanadate resistance protein GOG5P, member of the triose phosphate translocater family of membrane transporters" ------------------ Rule 1122: eval(_1,_2,gte1.1),classification(_2,ostariophysi) = 1 eval(_1,_2,b4.5e-2_1.1),sq_len(_2,b16_344),db_ref(_2,mim) = 1 eval(_1,_2,b0.0_1.0e-8),keyword(_2,inner_membrane),db_ref(_2,prints) = 1 ss(_1,_2,c),coil_len(_2,b3_4) = 1 ss(_1,_2,b),beta_len(_2,b6_7),nss(_2,_3,a) = 0 ss(_1,_2,a),ss(_1,_3,a),alpha_len(_2,b3_6),beta_dist(_1,b0.0_6.1),coil_dist(_1,b6.2_39.5) = 1 seq_aa_rat_pair_w_a <= 0.392 -> class 67/28/0/0 "drug transporters" Evaluation on training data (1658 items): ytybr180w 11,7,0,0 "DTR1" "dityrosine transporter" 67,28,0,0 "DTR1" "dityrosine transporter" ytypr198w 11,7,0,0 "SGE1" "drug resistance protein" 67,28,0,0 "SGE1" "drug resistance protein" ytygr224w 11,7,0,0 "AZR1" "strong similarity to drug resistance protein SGE1, YKR105c and YCL069W" 67,28,0,0 "AZR1" "strong similarity to drug resistance protein SGE1, YKR105c and YCL069W" ytycl069w 11,7,0,0 "null" "strong similarity to drug resistance protein SGE1" 67,28,0,0 "null" "strong similarity to drug resistance protein SGE1" ytymr279c 11,7,0,0 "null" "strong similarity to aminotriazole resistance protein" 67,28,0,0 "null" "strong similarity to aminotriazole resistance protein" ytyil121w 11,7,0,0 "null" "similarity to antibiotic resistance proteins" 67,28,0,0 "null" "similarity to antibiotic resistance proteins" ytygr138c 11,7,0,0 "TPO2" "polyamine transport protein" 67,28,0,0 "TPO2" "polyamine transport protein" ytybr008c 11,7,0,0 "FLR1" "fluconazole resistance protein" 67,28,0,0 "FLR1" "fluconazole resistance protein" ytyel065w 11,7,0,0 "SIT1" "probable multidrug resistance protein" 67,28,0,0 "SIT1" "probable multidrug resistance protein" 67,4,1,1 "SIT1" "probable multidrug resistance protein" ytyor273c 11,7,0,0 "TPO4" "polyamine transporter" 67,28,0,0 "TPO4" "polyamine transporter" ytybr043c 11,7,0,0 "null" "similarity to benomyl/methotrexate resistance protein" 67,28,0,0 "null" "similarity to benomyl/methotrexate resistance protein" ytydr119w 11,7,0,0 "null" "similarity to B.subtilis tetracyclin resistance" 67,28,0,0 "null" "similarity to B.subtilis tetracyclin resistance" ytynl065w 11,7,0,0 "AQR1" "similarity to resistance proteins" 67,28,0,0 "AQR1" "similarity to resistance proteins" ytykr105c 11,7,0,0 "null" "strong similarity to SGE1P and hypothetical protein YCL069w" 67,28,0,0 "null" "strong similarity to SGE1P and hypothetical protein YCL069w" ytyml116w 11,7,0,0 "ATR1" "aminotriazole and 4-nitroquinoline resistance protein" 40,2,0,0 "ATR1" "aminotriazole and 4-nitroquinoline resistance protein" 67,28,0,0 "ATR1" "aminotriazole and 4-nitroquinoline resistance protein" Training Accuracy: 15/15 (100.00%) Training Frequency class '67/28/0/0': 19/1658 (1.15%) Evaluation on validation data (856 items): ytypl274w - 1,1,7,0 "SAM3" "high affinity S-adenosylmethionine permease" 67,10,0,0 "SAM3" "high affinity S-adenosylmethionine permease" ytykl217w - 1,5,7,0 "JEN1" "carboxylic acid transporter protein" 67,7,0,0 "JEN1" "carboxylic acid transporter protein" ytymr088c 11,7,0,0 "null" "similarity to multidrug resistance proteins" 67,28,0,0 "null" "similarity to multidrug resistance proteins" ytyjr117w - 14,4,3,3 "STE24" "zinc metallo-protease" 40,7,0,0 "STE24" "zinc metallo-protease" 6,7,0,0 "STE24" "zinc metallo-protease" ytygl084c - 67,7,99,0 "GUP1" "similarity to GUP2P - putative glycerol transporter" ytypr156c 11,7,0,0 "TPO3" "polyamine transporter" 67,28,0,0 "TPO3" "polyamine transporter" ytyhr048w 11,7,0,0 "null" "similarity to multidrug resistance proteins" 67,28,0,0 "null" "similarity to multidrug resistance proteins" ytydl142c - 1,6,1,0 "CRD1" "cardiolipin synthase" ytygr289c - 1,5,7,0 "MAL11" "general alpha-glucoside permease" 67,7,0,0 "MAL11" "general alpha-glucoside permease" ytygr036c - 30,1,0,0 "CAX4" "required for full levels of dolichol-linked oligosaccharides in the endoplasmic reticulum" 6,7,0,0 "CAX4" "required for full levels of dolichol-linked oligosaccharides in the endoplasmic reticulum" Validation Accuracy: 3/10 (30.00%) Validation Frequency class '67/28/0/0': 4/856 (0.47%) Evaluation on propertest data (1309 items): ytyll028w 11,7,0,0 "TPO1" "polyamine transport protein" 67,28,0,0 "TPO1" "polyamine transport protein" ytyhl040c 11,7,0,0 "ARN1" "ferrichrome-type siderophore transporter" 67,28,0,0 "ARN1" "ferrichrome-type siderophore transporter" ytynr055c 11,7,0,0 "HOL1" "member of major facilitator superfamily multidrug-resistance protein subfamily 1" 67,28,0,0 "HOL1" "member of major facilitator superfamily multidrug-resistance protein subfamily 1" ytyjr152w - 40,2,0,0 "DAL5" "allantoate permease" 67,19,0,0 "DAL5" "allantoate permease" 8,19,0,0 "DAL5" "allantoate permease" ytyil120w 11,7,0,0 "QDR1" "similarity to antibiotic resistance proteins" 67,28,0,0 "QDR1" "similarity to antibiotic resistance proteins" ytynr041c - 1,7,1,0 "COQ2" "para-hydroxybenzoate--polyprenyltransferase" 40,16,0,0 "COQ2" "para-hydroxybenzoate--polyprenyltransferase" ytyil049w - 14,4,3,1 "DFG10" "involved in filamentous growth, cell polarity, and cellular elongation" ytyol158c 11,7,0,0 "ENB1" "a gene of the major facilitator superfamily encodes a transporter for enterobactin" 67,28,0,0 "ENB1" "a gene of the major facilitator superfamily encodes a transporter for enterobactin" ytyhr032w 11,7,0,0 "ERC1" "ethionine resistance protein" 67,28,0,0 "ERC1" "ethionine resistance protein" ytyor192c - 1,3,19,0 "null" "strong similarity to Thi10p" 67,16,0,0 "null" "strong similarity to Thi10p" 67,19,0,0 "null" "strong similarity to Thi10p" ytycr075c - 40,7,0,0 "ERS1" "intracellular protein transport protein" 6,4,0,0 "ERS1" "intracellular protein transport protein" 8,99,0,0 "ERS1" "intracellular protein transport protein" ytycl073c 11,7,0,0 "null" "strong similarity to subtelomeric encoded proteins" 67,28,0,0 "null" "strong similarity to subtelomeric encoded proteins" ytypl076w - 1,6,1,0 "GPI2" "N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein" 40,7,0,0 "GPI2" "N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein" ytykr106w 11,7,0,0 "null" "strong similarity to subtelomeric encoded proteins" 67,28,0,0 "null" "strong similarity to subtelomeric encoded proteins" Propertest Accuracy: 8/14 (57.14%) Propertest Frequency class '67/28/0/0': 12/1309 (0.92%) New (unknown) data (856 items): ytymr155w - 99,0,0,0 "null" "weak similarity to E.coli hypothetical protein f402" ytypl264c - 99,0,0,0 "null" "strong similarity to YMR253c" ytyol137w - 99,0,0,0 "null" "weak similarity to tetracycline resistance proteins" ytynl275w - 98,0,0,0 "null" "similarity to human band 3 anion transport protein" ytynl305c - 99,0,0,0 "null" "similarity to C-term. of A.nidulans regulatory protein (qutR)" ytymr034c - 99,0,0,0 "null" "weak similarity to YPR201w" ytydr338c - 99,0,0,0 "null" "similarity to ERC1P" ytybr220c - 99,0,0,0 "null" "similarity to human acetyl-coenzyme A transporter" ------------------ Rule 1037: eval(_1,_2,gte1.1),classification(_2,ssdna_viruses) = 0 eval(_1,_2,b0.0_1.0e-8),keyword(_2,inner_membrane),db_ref(_2,prints) = 1 eval(_1,_2,b0.0_1.0e-8),classification(_2,enterobacteriaceae),db_ref(_2,embl) = 0 -> class 8/4/0/0 "mitochondrial transport" Evaluation on training data (1658 items): ytydl198c 40,16,0,0 "YHM1" "member of the mitochondrial carrier family (MCF)" 67,7,0,0 "YHM1" "member of the mitochondrial carrier family (MCF)" 8,4,0,0 "YHM1" "member of the mitochondrial carrier family (MCF)" ytyjl133w 4,5,5,1 "MRS3" "RNA splicing protein and member of the mitochondrial carrier family (MCF)" 40,16,0,0 "MRS3" "RNA splicing protein and member of the mitochondrial carrier family (MCF)" 8,4,0,0 "MRS3" "RNA splicing protein and member of the mitochondrial carrier family (MCF)" ytyil006w 1,7,10,0 "null" "similarity to FLX1P" 67,99,0,0 "null" "similarity to FLX1P" 8,4,0,0 "null" "similarity to FLX1P" ytykr052c 4,5,5,1 "MRS4" "RNA splicing protein and member of the mitochondrial carrier family (MCF)" 40,16,0,0 "MRS4" "RNA splicing protein and member of the mitochondrial carrier family (MCF)" 8,4,0,0 "MRS4" "RNA splicing protein and member of the mitochondrial carrier family (MCF)" ytyjr095w 1,5,4,0 "SFC1" "succinate-fumarate transporter" 1,5,7,0 "SFC1" "succinate-fumarate transporter" 40,16,0,0 "SFC1" "succinate-fumarate transporter" 67,7,0,0 "SFC1" "succinate-fumarate transporter" 8,4,0,0 "SFC1" "succinate-fumarate transporter" ytylr348c 1,4,7,0 "DIC1" "dicarboxylate carrier protein" 1,5,7,0 "DIC1" "dicarboxylate carrier protein" 40,16,0,0 "DIC1" "dicarboxylate carrier protein" 67,4,7,0 "DIC1" "dicarboxylate carrier protein" 67,7,0,0 "DIC1" "dicarboxylate carrier protein" 8,4,0,0 "DIC1" "dicarboxylate carrier protein" ytymr166c 8,4,0,0 "null" "similarity to members of the mitochondrial carrier protein family" ytybr104w 40,16,0,0 "YMC2" "mitochondrial carrier protein (MCF)" 8,4,0,0 "YMC2" "mitochondrial carrier protein (MCF)" ytypl134c 67,16,0,0 "ODC1" "similarity to ADP,ATP carrier proteins" 8,4,0,0 "ODC1" "similarity to ADP,ATP carrier proteins" ytygr096w 1,3,19,0 "null" "hypothetical mitochondrial transport protein" 67,16,0,0 "null" "hypothetical mitochondrial transport protein" 8,4,0,0 "null" "hypothetical mitochondrial transport protein" ytyfr045w - 67,7,0,0 "null" "similarity to mitochondrial citrate transport proteins" ytygr257c 8,4,0,0 "null" "similarity to C.elegans C16C10.1" ytydl119c 40,16,0,0 "null" "similarity to bovine Graves disease carrier protein" 8,4,0,0 "null" "similarity to bovine Graves disease carrier protein" ytynl083w 8,4,0,0 "null" "weak similarity to rabbit peroxisomal Ca-dependent solute carrier" ytykl120w 40,16,0,0 "OAC1" "similarity to mitochondrial uncoupling proteins (MCF)" 67,4,7,0 "OAC1" "similarity to mitochondrial uncoupling proteins (MCF)" 8,4,0,0 "OAC1" "similarity to mitochondrial uncoupling proteins (MCF)" Training Accuracy: 14/15 (93.33%) Training Frequency class '8/4/0/0': 40/1658 (2.41%) Evaluation on validation data (856 items): ytyer053c 1,4,7,0 "null" "strong similarity to mitochondrial phosphate carrier protein" 67,4,7,0 "null" "strong similarity to mitochondrial phosphate carrier protein" 8,4,0,0 "null" "strong similarity to mitochondrial phosphate carrier protein" ytyor100c 8,4,0,0 "CRC1" "mitochondrial carnitine carrier, member of the mitochondrial carrier (MCF) family" ytydr107c - 40,22,0,0 "null" "strong similarity to EMP70 protein" 8,7,0,0 "null" "strong similarity to EMP70 protein" ytypr058w 40,16,0,0 "YMC1" "mitochondrial carrier protein (MCF)" 67,99,0,0 "YMC1" "mitochondrial carrier protein (MCF)" 8,4,0,0 "YMC1" "mitochondrial carrier protein (MCF)" ytyol031c - 40,7,0,0 "null" "weak similarity to Y.lipolytica SLS1 protein precursor" 6,1,0,0 "null" "weak similarity to Y.lipolytica SLS1 protein precursor" 6,4,0,0 "null" "weak similarity to Y.lipolytica SLS1 protein precursor" ytyjr077c 1,4,7,0 "MIR1" "phosphate transport protein, mitochondrial (MCF)" 13,1,3,3 "MIR1" "phosphate transport protein, mitochondrial (MCF)" 40,16,0,0 "MIR1" "phosphate transport protein, mitochondrial (MCF)" 67,4,7,0 "MIR1" "phosphate transport protein, mitochondrial (MCF)" 8,4,0,0 "MIR1" "phosphate transport protein, mitochondrial (MCF)" Validation Accuracy: 4/6 (66.67%) Validation Frequency class '8/4/0/0': 13/856 (1.52%) Evaluation on propertest data (1309 items): ytybr085w 1,3,19,0 "AAC3" "ADP/ATP carrier protein (MCF)" 40,16,0,0 "AAC3" "ADP/ATP carrier protein (MCF)" 67,16,0,0 "AAC3" "ADP/ATP carrier protein (MCF)" 8,4,0,0 "AAC3" "ADP/ATP carrier protein (MCF)" ytyil134w 1,7,10,0 "FLX1" "FAD carrier protein (MCF), mitochondrial" 40,16,0,0 "FLX1" "FAD carrier protein (MCF), mitochondrial" 67,99,0,0 "FLX1" "FAD carrier protein (MCF), mitochondrial" 8,4,0,0 "FLX1" "FAD carrier protein (MCF), mitochondrial" ytymr076c - 3,3,2,0 "PDS5" "precocious dissociation of sister chromatids" ytybl030c 1,3,19,0 "PET9" "ADP/ATP carrier protein (MCF)" 40,16,0,0 "PET9" "ADP/ATP carrier protein (MCF)" 67,16,0,0 "PET9" "ADP/ATP carrier protein (MCF)" 8,4,0,0 "PET9" "ADP/ATP carrier protein (MCF)" ytyor130c 1,1,7,0 "ORT1" "ornithine transport protein of mitochondria involved in arginine metabolism, member of the mitochondrial carrier family (MCF)" 40,16,0,0 "ORT1" "ornithine transport protein of mitochondria involved in arginine metabolism, member of the mitochondrial carrier family (MCF)" 67,10,0,0 "ORT1" "ornithine transport protein of mitochondria involved in arginine metabolism, member of the mitochondrial carrier family (MCF)" 8,4,0,0 "ORT1" "ornithine transport protein of mitochondria involved in arginine metabolism, member of the mitochondrial carrier family (MCF)" ytyel006w 67,99,0,0 "null" "similarity to peroxisomal membrane and mitochondrial carrier proteins" 8,4,0,0 "null" "similarity to peroxisomal membrane and mitochondrial carrier proteins" ytypr011c 1,3,19,0 "null" "similarity to ADP/ATP carrier proteins and Graves disease carrier protein" 67,16,0,0 "null" "similarity to ADP/ATP carrier proteins and Graves disease carrier protein" 8,4,0,0 "null" "similarity to ADP/ATP carrier proteins and Graves disease carrier protein" ytynl003c 67,99,0,0 "PET8" "member of the mitochondrial carrier (MCF) family" 8,4,0,0 "PET8" "member of the mitochondrial carrier (MCF) family" ytybr192w 2,13,0,0 "RIM2" "mitochondrial carrier protein (MCF)" 40,16,0,0 "RIM2" "mitochondrial carrier protein (MCF)" 67,16,0,0 "RIM2" "mitochondrial carrier protein (MCF)" 8,4,0,0 "RIM2" "mitochondrial carrier protein (MCF)" ytypl076w - 1,6,1,0 "GPI2" "N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein" 40,7,0,0 "GPI2" "N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein" ytyor222w 1,3,19,0 "ODC2" "similarity to ADP/ATP carrier proteins" 67,16,0,0 "ODC2" "similarity to ADP/ATP carrier proteins" 8,4,0,0 "ODC2" "similarity to ADP/ATP carrier proteins" ytymr056c 1,3,19,0 "AAC1" "ADP/ATP carrier protein (MCF)" 40,16,0,0 "AAC1" "ADP/ATP carrier protein (MCF)" 67,16,0,0 "AAC1" "ADP/ATP carrier protein (MCF)" 8,4,0,0 "AAC1" "ADP/ATP carrier protein (MCF)" ytyhr002w 1,3,19,0 "null" "similarity to bovine mitochondrial carrier protein/Grave's disease carrier protein" 67,16,0,0 "null" "similarity to bovine mitochondrial carrier protein/Grave's disease carrier protein" 8,4,0,0 "null" "similarity to bovine mitochondrial carrier protein/Grave's disease carrier protein" Propertest Accuracy: 11/13 (84.62%) Propertest Frequency class '8/4/0/0': 27/1309 (2.06%) New (unknown) data (856 items): ytypr128c - 99,0,0,0 "ANT1" "peroxisomal ATP carrier" ytydr470c - 99,0,0,0 "UGO1" "similarity to chromosome segregation protein CSE1P" ------------------ Rule 1135: seq_aa_rat_pair_w_h <= 0.132 seq_cai > 0.59 -> class 40/3/0/0 "cytoplasm" Evaluation on training data (1658 items): ytyer131w 40,3,0,0 "RPS26B" "40S small subunit ribosomal protein S26e-c5" 5,1,0,0 "RPS26B" "40S small subunit ribosomal protein S26e-c5" ytyel034w 1,3,16,0 "HYP2" "translation initiation factor eIF5A.1" 40,3,0,0 "HYP2" "translation initiation factor eIF5A.1" 5,4,0,0 "HYP2" "translation initiation factor eIF5A.1" ytyer117w 40,3,0,0 "RPL23B" "ribosomal protein L23.e" 5,1,0,0 "RPL23B" "ribosomal protein L23.e" ytyil052c 40,3,0,0 "RPL34B" "ribosomal protein L34.e" 5,1,0,0 "RPL34B" "ribosomal protein L34.e" ytybr181c 40,3,0,0 "RPS6B" "ribosomal protein S6.e" 5,1,0,0 "RPS6B" "ribosomal protein S6.e" ytyil133c 40,3,0,0 "RPL16A" "60S large subunit ribosomal protein" 5,1,0,0 "RPL16A" "60S large subunit ribosomal protein" ytyfr032c-a 40,3,0,0 "RPL29" "60S large subunit ribosomal protein" 5,1,0,0 "RPL29" "60S large subunit ribosomal protein" ytyhr021c 40,3,0,0 "RPS27B" "ribosomal protein S27.e" 5,1,0,0 "RPS27B" "ribosomal protein S27.e" ytynl030w - 4,5,1,4 "HHF2" "histone H4" 40,10,3,0 "HHF2" "histone H4" ytybl087c 40,3,0,0 "RPL23A" "60S large subunit ribosomal protein L23.e" 5,1,0,0 "RPL23A" "60S large subunit ribosomal protein L23.e" ytybr011c 1,4,1,0 "IPP1" "inorganic pyrophosphatase, cytoplasmic" 40,3,0,0 "IPP1" "inorganic pyrophosphatase, cytoplasmic" ytydl191w 40,3,0,0 "RPL35A" "60S large subunit ribosomal protein" 5,1,0,0 "RPL35A" "60S large subunit ribosomal protein" ytyor182c 40,3,0,0 "RPS30B" "ribosomal protein S30" 5,1,0,0 "RPS30B" "ribosomal protein S30" ytygr148c 40,3,0,0 "RPL24B" "60S large subunit ribosomal protein L24.e.B" 5,1,0,0 "RPL24B" "60S large subunit ribosomal protein L24.e.B" ytydr450w 40,3,0,0 "RPS18A" "ribosomal protein S18.e.c4" 5,1,0,0 "RPS18A" "ribosomal protein S18.e.c4" ytylr029c 40,3,0,0 "RPL15A" "60s large subunit ribosomal protein L15.e.c12" 5,1,0,0 "RPL15A" "60s large subunit ribosomal protein L15.e.c12" ytygl147c 40,3,0,0 "RPL9A" "ribosomal protein L9.e" 5,1,0,0 "RPL9A" "ribosomal protein L9.e" ytybr189w 40,3,0,0 "RPS9B" "ribosomal protein S9.e.B" 5,1,0,0 "RPS9B" "ribosomal protein S9.e.B" ytydr025w 40,3,0,0 "RPS11A" "ribosomal protein S11.e" 5,1,0,0 "RPS11A" "ribosomal protein S11.e" ytybr031w 40,3,0,0 "RPL4A" "ribosomal protein" 5,1,0,0 "RPL4A" "ribosomal protein" ytykl180w 40,3,0,0 "RPL17A" "ribosomal protein L17.e" 5,1,0,0 "RPL17A" "ribosomal protein L17.e" ytylr061w - 5,1,0,0 "RPL22A" "ribosomal protein" ytylr048w 40,3,0,0 "RPS0B" "40S ribosomal protein p40 homolog B" 5,1,0,0 "RPS0B" "40S ribosomal protein p40 homolog B" 6,10,0,0 "RPS0B" "40S ribosomal protein p40 homolog B" ytypr080w 40,3,0,0 "TEF1" "translation elongation factor eEF1 alpha-A chain, cytosolic" 5,4,0,0 "TEF1" "translation elongation factor eEF1 alpha-A chain, cytosolic" ytybr084c-a 40,3,0,0 "RPL19A" "60S large subunit ribosomal protein L19.e" 5,1,0,0 "RPL19A" "60S large subunit ribosomal protein L19.e" ytyhr141c 40,3,0,0 "RPL42B" "ribosomal protein L36a.e" 5,1,0,0 "RPL42B" "ribosomal protein L36a.e" ytyhl046c - 11,1,0,0 "null" "strong similarity to members of the SRP1P/TIP1P family" ytyer056c-a 40,3,0,0 "RPL34A" "ribosomal protein L34" 5,1,0,0 "RPL34A" "ribosomal protein L34" ytyor369c 40,3,0,0 "RPS12" "40S small subunit acidic ribosomal protein S12" 5,1,0,0 "RPS12" "40S small subunit acidic ribosomal protein S12" ytydr224c - 4,5,1,4 "HTB1" "histone H2B" 40,10,3,0 "HTB1" "histone H2B" ytycr012w 1,5,1,0 "PGK1" "phosphoglycerate kinase" 2,1,0,0 "PGK1" "phosphoglycerate kinase" 40,3,0,0 "PGK1" "phosphoglycerate kinase" ytydl061c 40,3,0,0 "RPS29B" "ribosomal protein S29.e.B" 5,1,0,0 "RPS29B" "ribosomal protein S29.e.B" ytydr064w 40,3,0,0 "RPS13" "ribosomal protein" 5,1,0,0 "RPS13" "ribosomal protein" ytyml026c 40,3,0,0 "RPS18B" "ribosomal protein S18.e.c13" 5,1,0,0 "RPS18B" "ribosomal protein S18.e.c13" ytylr406c 40,3,0,0 "RPL31B" "60S large subunit ribosomal protein L31.e.c12" 5,1,0,0 "RPL31B" "60S large subunit ribosomal protein L31.e.c12" ytylr340w 40,3,0,0 "RPP0" "acidic ribosomal protein L10.e" 5,1,0,0 "RPP0" "acidic ribosomal protein L10.e" ytygl189c 40,3,0,0 "RPS26A" "40S small subunit ribosomal protein S26e.c7" 5,1,0,0 "RPS26A" "40S small subunit ribosomal protein S26e.c7" ytyal003w 40,3,0,0 "EFB1" "translation elongation factor eEF1beta" 5,4,2,0 "EFB1" "translation elongation factor eEF1beta" ytylr167w 40,3,0,0 "RPS31" "ubiquitin/40S small subunit ribosomal protein" 5,1,0,0 "RPS31" "ubiquitin/40S small subunit ribosomal protein" 6,13,1,0 "RPS31" "ubiquitin/40S small subunit ribosomal protein" ytygl030w 40,3,0,0 "RPL30" "60S large subunit ribosomal protein L30.e" 5,1,0,0 "RPL30" "60S large subunit ribosomal protein L30.e" ytyal005c 11,1,0,0 "SSA1" "heat shock protein of HSP70 family, cytosolic" 40,3,0,0 "SSA1" "heat shock protein of HSP70 family, cytosolic" 6,1,0,0 "SSA1" "heat shock protein of HSP70 family, cytosolic" 6,4,0,0 "SSA1" "heat shock protein of HSP70 family, cytosolic" 8,1,0,0 "SSA1" "heat shock protein of HSP70 family, cytosolic" ytyml028w 11,7,0,0 "TSA1" "thiol-specific antioxidant" 40,3,0,0 "TSA1" "thiol-specific antioxidant" ytylr249w 30,1,0,0 "YEF3" "translation elongation factor eEF3" 40,3,0,0 "YEF3" "translation elongation factor eEF3" 5,4,0,0 "YEF3" "translation elongation factor eEF3" ytylr344w 40,3,0,0 "RPL26A" "60S large subunit ribosomal protein" 5,1,0,0 "RPL26A" "60S large subunit ribosomal protein" ytydl082w 40,3,0,0 "RPL13A" "60S large subunit ribosomal protein L13" 5,1,0,0 "RPL13A" "60S large subunit ribosomal protein L13" ytydr500c 40,3,0,0 "RPL37B" "ribosomal protein L.37.e" 5,1,0,0 "RPL37B" "ribosomal protein L.37.e" ytyor312c 40,3,0,0 "RPL20B" "60S large subunit ribosomal protein" 5,1,0,0 "RPL20B" "60S large subunit ribosomal protein" ytydl229w 40,3,0,0 "SSB1" "heat shock protein of HSP70 family" 5,99,0,0 "SSB1" "heat shock protein of HSP70 family" ytynl178w 40,3,0,0 "RPS3" "ribosomal protein S3.e" 5,1,0,0 "RPS3" "ribosomal protein S3.e" ytyhr010w 40,3,0,0 "RPL27A" "60S large subunit ribosomal protein L27.e" 5,1,0,0 "RPL27A" "60S large subunit ribosomal protein L27.e" ytyor234c - 5,1,0,0 "RPL33B" "ribosomal protein L35a.e.c15" ytygr214w 14,4,3,1 "RPS0A" "40S ribosomal protein p40 homolog A" 40,3,0,0 "RPS0A" "40S ribosomal protein p40 homolog A" 5,1,0,0 "RPS0A" "40S ribosomal protein p40 homolog A" 6,10,0,0 "RPS0A" "40S ribosomal protein p40 homolog A" ytykr057w 40,3,0,0 "RPS21A" "ribosomal protein S21.e" 5,1,0,0 "RPS21A" "ribosomal protein S21.e" ytyjl177w 40,3,0,0 "RPL17B" "60s large subunit ribosomal protein L17.e" 5,1,0,0 "RPL17B" "60s large subunit ribosomal protein L17.e" ytykl056c 40,3,0,0 "null" "strong similarity to human IgE-dependent histamine-releasing factor" 5,1,0,0 "null" "strong similarity to human IgE-dependent histamine-releasing factor" ytybl092w 40,3,0,0 "RPL32" "60S large subunit ribosomal protein L32.e" 5,1,0,0 "RPL32" "60S large subunit ribosomal protein L32.e" ytykl096w-a - 40,1,0,0 "CWP2" "cell wall mannoprotein" ytykl152c 1,5,1,0 "GPM1" "phosphoglycerate mutase" 2,1,0,0 "GPM1" "phosphoglycerate mutase" 40,3,0,0 "GPM1" "phosphoglycerate mutase" ytybr191w 40,3,0,0 "RPL21A" "ribosomal protein L21.e" 5,1,0,0 "RPL21A" "ribosomal protein L21.e" ytylr448w 40,3,0,0 "RPL6B" "60S large subunit ribosomal protein" 5,1,0,0 "RPL6B" "60S large subunit ribosomal protein" ytypr132w 40,3,0,0 "RPS23B" "40S small subunit ribosomal protein S23.e" 5,1,0,0 "RPS23B" "40S small subunit ribosomal protein S23.e" ytyhl015w 40,3,0,0 "RPS20" "ribosomal protein" 5,1,0,0 "RPS20" "ribosomal protein" ytylr037c - 40,1,0,0 "DAN2" "strong similarity to members of the SRP1P/TIP1P family" ytypl131w 40,3,0,0 "RPL5" "60S large subunit ribosomal protein L5.e" 5,1,0,0 "RPL5" "60S large subunit ribosomal protein L5.e" ytyil148w 40,3,0,0 "RPL40A" "ubiquitin" 5,1,0,0 "RPL40A" "ubiquitin" 6,13,1,0 "RPL40A" "ubiquitin" ytyjr123w 40,3,0,0 "RPS5" "ribosomal protein S5.e" 5,1,0,0 "RPS5" "ribosomal protein S5.e" ytydr447c 40,3,0,0 "RPS17B" "ribosomal protein S17.e.B" 5,1,0,0 "RPS17B" "ribosomal protein S17.e.B" ytygl076c 40,3,0,0 "RPL7A" "60S large subunit ribosomal protein L7.e.A" 5,1,0,0 "RPL7A" "60S large subunit ribosomal protein L7.e.A" ytylr134w 1,5,1,0 "PDC5" "pyruvate decarboxylase, isozyme 2" 2,16,0,0 "PDC5" "pyruvate decarboxylase, isozyme 2" 40,3,0,0 "PDC5" "pyruvate decarboxylase, isozyme 2" ytygr254w 1,5,1,0 "ENO1" "enolase I (2-phosphoglycerate dehydratase)" 2,1,0,0 "ENO1" "enolase I (2-phosphoglycerate dehydratase)" 40,3,0,0 "ENO1" "enolase I (2-phosphoglycerate dehydratase)" ytynl301c 40,3,0,0 "RPL18B" "60S large subunit ribosomal protein L18.e" 5,1,0,0 "RPL18B" "60S large subunit ribosomal protein L18.e" ytylr150w - 1,5,4,0 "STM1" "specific affinity for guanine-rich quadruplex nucleic acids" 10,1,99,0 "STM1" "specific affinity for guanine-rich quadruplex nucleic acids" ytydr385w 40,3,0,0 "EFT2" "translation elongation factor eEF2" 5,4,0,0 "EFT2" "translation elongation factor eEF2" ytyor293w 40,3,0,0 "RPS10A" "ribosomal protein S10.e" 5,1,0,0 "RPS10A" "ribosomal protein S10.e" ytydr134c - 40,1,0,0 "null" "strong similarity to FLO1P, FLO5P, FLO9P and YLR110c" ytykl006w 40,3,0,0 "RPL14A" "ribosomal protein" 5,1,0,0 "RPL14A" "ribosomal protein" ytynl067w 40,3,0,0 "RPL9B" "ribosomal protein L9.e.c14" 5,1,0,0 "RPL9B" "ribosomal protein L9.e.c14" ytybr301w - 40,1,0,0 "DAN3" "cell wall mannoprotein" ytyol120c 40,3,0,0 "RPL18A" "60S large subunit ribosomal protein S18.e" 5,1,0,0 "RPL18A" "60S large subunit ribosomal protein S18.e" ytymr116c 2,16,0,0 "ASC1" "40S small subunit ribosomal protein" 40,3,0,0 "ASC1" "40S small subunit ribosomal protein" 5,1,0,0 "ASC1" "40S small subunit ribosomal protein" 5,4,0,0 "ASC1" "40S small subunit ribosomal protein" ytyil018w 40,3,0,0 "RPL2B" "60S large subunit ribosomal protein L8.e" 5,1,0,0 "RPL2B" "60S large subunit ribosomal protein L8.e" ytycr104w - 11,1,0,0 "PAU3" "strong similarity to members of the SRP1/TIP1P family" ytyfr031c-a - 5,1,0,0 "RPL2A" "ribosomal protein L8.e" ytyhr174w 1,5,1,0 "ENO2" "enolase II (2-phosphoglycerate dehydratase)" 2,1,0,0 "ENO2" "enolase II (2-phosphoglycerate dehydratase)" 40,3,0,0 "ENO2" "enolase II (2-phosphoglycerate dehydratase)" ytydl075w 40,3,0,0 "RPL31A" "60S large subunit ribosomal protein L31.e" 5,1,0,0 "RPL31A" "60S large subunit ribosomal protein L31.e" Training Accuracy: 73/85 (85.88%) Training Frequency class '40/3/0/0': 244/1658 (14.72%) Evaluation on validation data (856 items): ytyjl190c 40,3,0,0 "RPS22A" "ribosomal protein S15a.e.c10" 5,1,0,0 "RPS22A" "ribosomal protein S15a.e.c10" ytydl078c - 1,5,1,0 "MDH3" "malate dehydrogenase, peroxisomal" 1,6,7,0 "MDH3" "malate dehydrogenase, peroxisomal" 2,99,0,0 "MDH3" "malate dehydrogenase, peroxisomal" 40,19,0,0 "MDH3" "malate dehydrogenase, peroxisomal" ytyhl001w 40,3,0,0 "RPL14B" "ribosomal protein" 5,1,0,0 "RPL14B" "ribosomal protein" ytylr110c - 30,1,0,0 "CCW12" "strong similarity to FLO1P" ytyol161c - 11,1,0,0 "null" "strong similarity to members of the SRP1P/TIP1P family" ytydr012w 40,3,0,0 "RPL4B" "ribosomal protein L4.e.B" 5,1,0,0 "RPL4B" "ribosomal protein L4.e.B" ytyel054c 40,3,0,0 "RPL12A" "60S large subunit ribosomal protein L12.e" 5,1,0,0 "RPL12A" "60S large subunit ribosomal protein L12.e" ytylr461w - 11,1,0,0 "PAU4" "strong similarity to members of the TIR1P/TIP1P family" ytyll024c - 6,1,0,0 "SSA2" "heat shock protein of HSP70 family, cytosolic" 6,4,0,0 "SSA2" "heat shock protein of HSP70 family, cytosolic" 8,4,0,0 "SSA2" "heat shock protein of HSP70 family, cytosolic" 8,7,0,0 "SSA2" "heat shock protein of HSP70 family, cytosolic" ytyjl189w 40,3,0,0 "RPL39" "60S large subunit ribosomal protein L39.e" 5,1,0,0 "RPL39" "60S large subunit ribosomal protein L39.e" ytyal038w 1,5,1,0 "CDC19" "pyruvate kinase" 2,1,0,0 "CDC19" "pyruvate kinase" 40,3,0,0 "CDC19" "pyruvate kinase" ytyor096w 40,3,0,0 "RPS7A" "ribosomal protein" 5,1,0,0 "RPS7A" "ribosomal protein" ytypl037c - 1,5,4,0 "EGD1" "GAL4 DNA-binding enhancer protein" 4,5,1,4 "EGD1" "GAL4 DNA-binding enhancer protein" 40,10,0,0 "EGD1" "GAL4 DNA-binding enhancer protein" 6,4,0,0 "EGD1" "GAL4 DNA-binding enhancer protein" ytylr044c 1,5,1,0 "PDC1" "pyruvate decarboxylase, isozyme 1" 2,13,0,0 "PDC1" "pyruvate decarboxylase, isozyme 1" 2,16,0,0 "PDC1" "pyruvate decarboxylase, isozyme 1" 40,3,0,0 "PDC1" "pyruvate decarboxylase, isozyme 1" ytyhr203c 40,3,0,0 "RPS4B" "ribosomal protein S4.e.c8" 5,1,0,0 "RPS4B" "ribosomal protein S4.e.c8" ytyhl033c 40,3,0,0 "RPL8A" "60S large subunit ribosomal protein L7a.e.A" 5,1,0,0 "RPL8A" "60S large subunit ribosomal protein L7a.e.A" ytylr388w 40,3,0,0 "RPS29A" "ribosomal protein S29.e.A" 5,1,0,0 "RPS29A" "ribosomal protein S29.e.A" ytyjr047c 40,3,0,0 "ANB1" "translation initiation factor eIF5A.2" 5,4,0,0 "ANB1" "translation initiation factor eIF5A.2" ytynl302c 40,3,0,0 "RPS19B" "40S small subunit ribosomal protein S19.e" 5,1,0,0 "RPS19B" "40S small subunit ribosomal protein S19.e" ytygr192c 1,5,1,0 "TDH3" "glyceraldehyde-3-phosphate dehydrogenase 3" 2,1,0,0 "TDH3" "glyceraldehyde-3-phosphate dehydrogenase 3" 40,3,0,0 "TDH3" "glyceraldehyde-3-phosphate dehydrogenase 3" ytyjr145c 40,3,0,0 "RPS4A" "ribosomal protein S4.e.c10" 5,1,0,0 "RPS4A" "ribosomal protein S4.e.c10" ytydl130w 40,3,0,0 "RPP1B" "60S large subunit acidic ribosomal protein L44prime" 5,1,0,0 "RPP1B" "60S large subunit acidic ribosomal protein L44prime" ytynr076w - 11,1,0,0 "PAU6" "strong similarity to members of the TIR1P/TIP1P family" ytylr075w 3,3,1,0 "RPL10" "60S large subunit ribosomal protein" 40,3,0,0 "RPL10" "60S large subunit ribosomal protein" 5,1,0,0 "RPL10" "60S large subunit ribosomal protein" 6,10,0,0 "RPL10" "60S large subunit ribosomal protein" ytynl162w 40,3,0,0 "RPL42A" "ribosomal protein L36a.e" 5,1,0,0 "RPL42A" "ribosomal protein L36a.e" ytylr325c 40,3,0,0 "RPL38" "60S large subunit ribosomal protein" 5,1,0,0 "RPL38" "60S large subunit ribosomal protein" ytyol121c 40,3,0,0 "RPS19A" "40S small subunit ribosomal protein S19.e" 5,1,0,0 "RPS19A" "40S small subunit ribosomal protein S19.e" ytyer102w 40,3,0,0 "RPS8B" "ribosomal protein S8.e" 5,1,0,0 "RPS8B" "ribosomal protein S8.e" ytylr333c 40,3,0,0 "RPS25B" "ribosomal protein S25.e.c12" 5,1,0,0 "RPS25B" "ribosomal protein S25.e.c12" ytydl136w 40,3,0,0 "RPL35B" "60S large subunit ribosomal protein" 5,1,0,0 "RPL35B" "60S large subunit ribosomal protein" ytyor133w 40,3,0,0 "EFT1" "translation elongation factor eEF2" 5,4,0,0 "EFT1" "translation elongation factor eEF2" ytygl103w 40,3,0,0 "RPL28" "60S large subunit ribosomal protein L27a.e" 5,1,0,0 "RPL28" "60S large subunit ribosomal protein L27a.e" ytynl096c 40,3,0,0 "RPS7B" "strong similarity to ribosomal protein S7" 5,1,0,0 "RPS7B" "strong similarity to ribosomal protein S7" ytypr102c 40,3,0,0 "RPL11A" "ribosomal protein L11.e" 5,1,0,0 "RPL11A" "ribosomal protein L11.e" ytylr441c 14,4,3,3 "RPS1A" "ribosomal protein S3a.e" 40,3,0,0 "RPS1A" "ribosomal protein S3a.e" 5,1,0,0 "RPS1A" "ribosomal protein S3a.e" Validation Accuracy: 28/35 (80.00%) Validation Frequency class '40/3/0/0': 114/856 (13.32%) Evaluation on propertest data (1309 items): ytykl060c 1,5,1,0 "FBA1" "fructose-bisphosphate aldolase" 2,1,0,0 "FBA1" "fructose-bisphosphate aldolase" 40,3,0,0 "FBA1" "fructose-bisphosphate aldolase" ytylr355c - 1,1,1,0 "ILV5" "ketol-acid reducto-isomerase" 40,16,0,0 "ILV5" "ketol-acid reducto-isomerase" ytygl123w 40,3,0,0 "RPS2" "40S small subunit ribosomal protein" 5,1,0,0 "RPS2" "40S small subunit ribosomal protein" ytyil053w - 1,5,1,0 "RHR2" "DL-glycerol phosphatase" ytypl198w 40,3,0,0 "RPL7B" "60S large subunit ribosomal protein" 5,1,0,0 "RPL7B" "60S large subunit ribosomal protein" ytyml073c 40,3,0,0 "RPL6A" "60S large subunit ribosomal protein" 5,1,0,0 "RPL6A" "60S large subunit ribosomal protein" ytydr418w 40,3,0,0 "RPL12B" "60S large subunit ribosomal protein L12.e" 5,1,0,0 "RPL12B" "60S large subunit ribosomal protein L12.e" ytybr010w - 4,5,1,4 "HHT1" "histone H3" 40,10,3,0 "HHT1" "histone H3" ytypr043w 40,3,0,0 "RPL43A" "ribosomal protein L37a.e" 5,1,0,0 "RPL43A" "ribosomal protein L37a.e" ytyfl014w - 1,5,1,0 "HSP12" "heat shock protein" 1,6,7,0 "HSP12" "heat shock protein" 11,1,0,0 "HSP12" "heat shock protein" 13,11,3,13 "HSP12" "heat shock protein" 3,1,5,1 "HSP12" "heat shock protein" ytyer074w 40,3,0,0 "RPS24A" "40s small subunit ribosomal protein S24.e" 5,1,0,0 "RPS24A" "40s small subunit ribosomal protein S24.e" ytygr085c 40,3,0,0 "RPL11B" "ribosomal protein" 5,1,0,0 "RPL11B" "ribosomal protein" ytyer091c 1,1,1,0 "MET6" "5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase" 40,3,0,0 "MET6" "5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase" ytypl220w 40,3,0,0 "RPL1A" "ribosomal protein" 5,1,0,0 "RPL1A" "ribosomal protein" ytyll045c 40,3,0,0 "RPL8B" "60s large subunit ribosomal protein L7a.e.B" 5,1,0,0 "RPL8B" "60s large subunit ribosomal protein L7a.e.B" ytymr194w 40,3,0,0 "RPL36A" "60S large subunit ribosomal protein" 5,1,0,0 "RPL36A" "60S large subunit ribosomal protein" ytypl143w 40,3,0,0 "RPL33A" "ribosomal protein L35a.e.c16" 5,1,0,0 "RPL33A" "ribosomal protein L35a.e.c16" ytyjl052w 1,5,1,0 "TDH1" "glyceraldehyde-3-phosphate dehydrogenase 1" 2,1,0,0 "TDH1" "glyceraldehyde-3-phosphate dehydrogenase 1" 40,3,0,0 "TDH1" "glyceraldehyde-3-phosphate dehydrogenase 1" ytyjl136c 40,3,0,0 "RPS21B" "40S small subunit ribosomal protein S21.e" 5,1,0,0 "RPS21B" "40S small subunit ribosomal protein S21.e" ytybr118w 40,3,0,0 "TEF2" "translation elongation factor eEF1 alpha-A chain, cytosolic" 5,4,0,0 "TEF2" "translation elongation factor eEF1 alpha-A chain, cytosolic" ytyjl138c 40,3,0,0 "TIF2" "translation initiation factor eIF4A" 5,4,0,0 "TIF2" "translation initiation factor eIF4A" ytyml024w 40,3,0,0 "RPS17A" "ribosomal protein S17.e.A" 5,1,0,0 "RPS17A" "ribosomal protein S17.e.A" ytydr225w - 4,5,1,4 "HTA1" "histone H2A" 40,10,3,0 "HTA1" "histone H2A" ytyjr092w - 14,4,3,1 "BUD4" "budding protein" 40,1,0,0 "BUD4" "budding protein" ytygl031c 40,3,0,0 "RPL24A" "60S large subunit ribosomal protein L24.e.A" 5,1,0,0 "RPL24A" "60S large subunit ribosomal protein L24.e.A" ytycr031c 40,3,0,0 "RPS14A" "40S Ribosomal protein S14.e" 5,1,0,0 "RPS14A" "40S Ribosomal protein S14.e" ytylr287c-a 40,3,0,0 "RPS30A" "40S small subunit ribosomal protein" 5,1,0,0 "RPS30A" "40S small subunit ribosomal protein" ytygr034w 40,3,0,0 "RPL26B" "60S large subunit ribosomal protein" 5,1,0,0 "RPL26B" "60S large subunit ribosomal protein" ytybl072c 40,3,0,0 "RPS8A" "ribosomal protein S8.e" 5,1,0,0 "RPS8A" "ribosomal protein S8.e" ytydl081c 40,3,0,0 "RPP1A" "60S large subunit acidic ribosomal protein a1" 5,1,0,0 "RPP1A" "60S large subunit acidic ribosomal protein a1" 5,4,0,0 "RPP1A" "60S large subunit acidic ribosomal protein a1" ytymr142c 40,3,0,0 "RPL13B" "60S large subunit ribosomal protein" 5,1,0,0 "RPL13B" "60S large subunit ribosomal protein" ytyol039w 40,3,0,0 "RPP2A" "acidic ribosomal protein P2.beta" 5,1,0,0 "RPP2A" "acidic ribosomal protein P2.beta" ytylr185w 40,3,0,0 "RPL37A" "ribosomal protein L37.e" 5,1,0,0 "RPL37A" "ribosomal protein L37.e" ytyer043c - 1,7,1,0 "SAH1" "S-adenosyl-L-homocysteine hydrolase" ytydl083c 40,3,0,0 "RPS16B" "ribosomal protein S16.e" 5,1,0,0 "RPS16B" "ribosomal protein S16.e" ytymr143w 40,3,0,0 "RPS16A" "ribosomal protein S16.e" 5,1,0,0 "RPS16A" "ribosomal protein S16.e" ytyhr183w 1,5,1,0 "GND1" "6-phosphogluconate dehydrogenase" 2,7,0,0 "GND1" "6-phosphogluconate dehydrogenase" 40,3,0,0 "GND1" "6-phosphogluconate dehydrogenase" ytyel026w - 4,5,5,1 "SNU13" "component of the U4/U6.U5 snRNP" ytygr118w 40,3,0,0 "RPS23A" "40S small subunit ribosomal protein S23.e" 5,1,0,0 "RPS23A" "40S small subunit ribosomal protein S23.e" ytyml063w 40,3,0,0 "RPS1B" "ribosomal protein S3a.e" 5,1,0,0 "RPS1B" "ribosomal protein S3a.e" ytymr242c 40,3,0,0 "RPL20A" "60s large subunit ribosomal protein" 5,1,0,0 "RPL20A" "60s large subunit ribosomal protein" ytykr059w 40,3,0,0 "TIF1" "translation initiation factor 4A" 5,4,0,0 "TIF1" "translation initiation factor 4A" ytyjr009c 1,5,1,0 "TDH2" "glyceraldehyde-3-phosphate dehydrogenase 2" 2,1,0,0 "TDH2" "glyceraldehyde-3-phosphate dehydrogenase 2" 40,3,0,0 "TDH2" "glyceraldehyde-3-phosphate dehydrogenase 2" ytygl135w 40,3,0,0 "RPL1B" "60S large subunit ribosomal protein" 5,1,0,0 "RPL1B" "60S large subunit ribosomal protein" ytyel049w - 11,1,0,0 "PAU2" "strong similarity to members of the SRP1P/TIP1P family" ytybr196c 1,5,1,0 "PGI1" "glucose-6-phosphate isomerase" 2,1,0,0 "PGI1" "glucose-6-phosphate isomerase" 40,3,0,0 "PGI1" "glucose-6-phosphate isomerase" ytykr094c 40,3,0,0 "RPL40B" "ubiquitin" 5,1,0,0 "RPL40B" "ubiquitin" 6,13,1,0 "RPL40B" "ubiquitin" ytyil069c 40,3,0,0 "RPS24B" "40S small subunit ribosomal protein S24.e" 5,1,0,0 "RPS24B" "40S small subunit ribosomal protein S24.e" ytybr009c - 4,5,1,4 "HHF1" "histone H4" 40,10,3,0 "HHF1" "histone H4" ytydr382w 40,3,0,0 "RPP2B" "60S large subunit acidic ribosomal protein" 5,1,0,0 "RPP2B" "60S large subunit acidic ribosomal protein" ytydr050c 1,5,1,0 "TPI1" "triose-phosphate isomerase" 2,1,0,0 "TPI1" "triose-phosphate isomerase" 40,3,0,0 "TPI1" "triose-phosphate isomerase" ytycr024c-a - 13,1,1,3 "PMP1" "H+-ATPase subunit, plasma membrane" 40,2,0,0 "PMP1" "H+-ATPase subunit, plasma membrane" 67,4,1,2 "PMP1" "H+-ATPase subunit, plasma membrane" 67,50,22,0 "PMP1" "H+-ATPase subunit, plasma membrane" ytygl253w 1,5,1,0 "HXK2" "hexokinase II" 1,5,4,0 "HXK2" "hexokinase II" 2,1,0,0 "HXK2" "hexokinase II" 40,10,0,0 "HXK2" "hexokinase II" 40,3,0,0 "HXK2" "hexokinase II" ytypl249c-a 40,3,0,0 "RPL36B" "60S large subunit ribosomal protein" 5,1,0,0 "RPL36B" "60S large subunit ribosomal protein" ytynl209w 40,3,0,0 "SSB2" "heat shock protein of HSP70 family, cytosolic" 5,99,0,0 "SSB2" "heat shock protein of HSP70 family, cytosolic" ytybl027w 40,3,0,0 "RPL19B" "60S large subunit ribosomal protein L19.e" 5,1,0,0 "RPL19B" "60S large subunit ribosomal protein L19.e" ytyjl223c - 11,1,0,0 "PAU1" "strong similarity to members of the SRP1P/TIP1P family" ytyer011w - 11,1,0,0 "TIR1" "cold-shock induced protein of the TIR1P,TIP1P family" 40,1,0,0 "TIR1" "cold-shock induced protein of the TIR1P,TIP1P family" ytypl090c 40,3,0,0 "RPS6A" "ribosomal protein S6.e" 5,1,0,0 "RPS6A" "ribosomal protein S6.e" ytyol040c 40,3,0,0 "RPS15" "40S small subunit ribosomal protein" 5,1,0,0 "RPS15" "40S small subunit ribosomal protein" ytynl069c 40,3,0,0 "RPL16B" "60S large subunit ribosomal protein" 5,1,0,0 "RPL16B" "60S large subunit ribosomal protein" ytybr048w 40,3,0,0 "RPS11B" "ribosomal protein S11.e.B" 5,1,0,0 "RPS11B" "ribosomal protein S11.e.B" ytydl055c - 1,5,1,0 "PSA1" "mannose-1-phosphate guanyltransferase" 30,1,0,0 "PSA1" "mannose-1-phosphate guanyltransferase" ytygl008c - 13,1,1,3 "PMA1" "H+-transporting P-type ATPase, major isoform, plasma membrane" 40,2,0,0 "PMA1" "H+-transporting P-type ATPase, major isoform, plasma membrane" 67,4,1,2 "PMA1" "H+-transporting P-type ATPase, major isoform, plasma membrane" 67,50,22,0 "PMA1" "H+-transporting P-type ATPase, major isoform, plasma membrane" ytypl079w 40,3,0,0 "RPL21B" "ribosomal protein L21" 5,1,0,0 "RPL21B" "ribosomal protein L21" ytydr155c 11,1,0,0 "CPH1" "cyclophilin (peptidylprolyl isomerase)" 40,3,0,0 "CPH1" "cyclophilin (peptidylprolyl isomerase)" 6,1,0,0 "CPH1" "cyclophilin (peptidylprolyl isomerase)" ytygr027c 40,3,0,0 "RPS25A" "ribosomal protein S25.e.c7" 5,1,0,0 "RPS25A" "ribosomal protein S25.e.c7" ytyol127w 40,3,0,0 "RPL25" "ribosomal protein L23a.e" 5,1,0,0 "RPL25" "ribosomal protein L23a.e" ytymr230w 40,3,0,0 "RPS10B" "ribosomal protein" 5,1,0,0 "RPS10B" "ribosomal protein" ytybr244w - 11,7,0,0 "GPX2" "glutathione peroxidases" Propertest Accuracy: 54/70 (77.14%) Propertest Frequency class '40/3/0/0': 196/1309 (14.97%) New (unknown) data (856 items): ytyir041w - 99,0,0,0 "null" "similarity to members of the SRP1P/TIP1P family" ytymr325w - 99,0,0,0 "null" "strong similarity to members of the SRP1P/TIP1P family" ytyal068c - 99,0,0,0 "null" "strong similarity to subtelomeric encoded proteins" ytygr294w - 99,0,0,0 "null" "strong similarity to members of the SRP1P/TIP1P family" ytykl224c - 99,0,0,0 "null" "strong similarity to members of the SRP1P/TIP1P family" ytyll025w - 99,0,0,0 "null" "strong similarity to members of the SRP1P/TIP1P family" ytyil176c - 99,0,0,0 "null" "strong similarity to members of the SRP1P/TIP1P family" ytyll064c - 99,0,0,0 "null" "strong similarity to members of the SRP1/TIP1P family" ytynl190w - 99,0,0,0 "null" "weak similarity to MUCIN 1 PRECURSOR Mesocricetus auratus (Golden hamster)" ytydr542w - 99,0,0,0 "null" "strong similarity to subtelomeric encoded proteins" ------------------ Rule 878: eval(_1,_2,b0.0_1.0e-8),mol_wt(_2,b38502_53922),sq_len(_2,b344_483) = 0 eval(_1,_2,b0.0_1.0e-8),sq_len(_2,b16_344),classification(_2,streptomycineae) = 1 seq_aa_rat_pair_a_i <= 1.036 cechdeeigagasp_gasch1_YP_fructose_vs_reference_pool_car_2 > -0.67 -> class 5/1/0/0 "ribosome biogenesis" Evaluation on training data (1658 items): ytyil133c 40,3,0,0 "RPL16A" "60S large subunit ribosomal protein" 5,1,0,0 "RPL16A" "60S large subunit ribosomal protein" ytynr036c 5,1,0,0 "null" "strong similarity to ribosomal protein S12" ytydr450w 40,3,0,0 "RPS18A" "ribosomal protein S18.e.c4" 5,1,0,0 "RPS18A" "ribosomal protein S18.e.c4" ytygl147c 40,3,0,0 "RPL9A" "ribosomal protein L9.e" 5,1,0,0 "RPL9A" "ribosomal protein L9.e" ytymr193w 40,16,0,0 "MRPL24" "ribosomal protein of the large subunit, mitochondrial" 5,1,0,0 "MRPL24" "ribosomal protein of the large subunit, mitochondrial" ytydl202w 40,16,0,0 "MRPL11" "ribosomal protein of the large subunit, mitochondrial" 5,1,0,0 "MRPL11" "ribosomal protein of the large subunit, mitochondrial" ytyml009c 40,16,0,0 "MRPL39" "60S ribosomal protein, mitochondrial" 5,1,0,0 "MRPL39" "60S ribosomal protein, mitochondrial" ytyhr147c 40,16,0,0 "MRPL6" "ribosomal protein of the large subunit, mitochondrial" 5,1,0,0 "MRPL6" "ribosomal protein of the large subunit, mitochondrial" ytydr064w 40,3,0,0 "RPS13" "ribosomal protein" 5,1,0,0 "RPS13" "ribosomal protein" ytyml026c 40,3,0,0 "RPS18B" "ribosomal protein S18.e.c13" 5,1,0,0 "RPS18B" "ribosomal protein S18.e.c13" ytylr340w 40,3,0,0 "RPP0" "acidic ribosomal protein L10.e" 5,1,0,0 "RPP0" "acidic ribosomal protein L10.e" ytydr347w 40,16,0,0 "MRP1" "ribosomal protein of the small subunit, mitochondrial" 5,1,0,0 "MRP1" "ribosomal protein of the small subunit, mitochondrial" ytypr132w 40,3,0,0 "RPS23B" "40S small subunit ribosomal protein S23.e" 5,1,0,0 "RPS23B" "40S small subunit ribosomal protein S23.e" ytykl003c 40,16,0,0 "MRP17" "ribosomal protein of the small subunit, mitochondrial" 5,1,0,0 "MRP17" "ribosomal protein of the small subunit, mitochondrial" ytynl081c 5,1,0,0 "null" "similarity to ribosomal protein S13" ytynl067w 40,3,0,0 "RPL9B" "ribosomal protein L9.e.c14" 5,1,0,0 "RPL9B" "ribosomal protein L9.e.c14" ytykl009w 1,3,16,0 "MRT4" "mRNA turnover 4" 4,5,5,0 "MRT4" "mRNA turnover 4" 5,1,0,0 "MRT4" "mRNA turnover 4" ytyer050c 5,1,0,0 "RSM18" "component of the mitochondrial ribosomal small subunit" Training Accuracy: 18/18 (100.00%) Training Frequency class '5/1/0/0': 92/1658 (5.55%) Evaluation on validation data (856 items): ytyjl096w 40,16,0,0 "MRPL49" "ribosomal protein YmL49, mitochondrial" 5,1,0,0 "MRPL49" "ribosomal protein YmL49, mitochondrial" ytydl078c - 1,5,1,0 "MDH3" "malate dehydrogenase, peroxisomal" 1,6,7,0 "MDH3" "malate dehydrogenase, peroxisomal" 2,99,0,0 "MDH3" "malate dehydrogenase, peroxisomal" 40,19,0,0 "MDH3" "malate dehydrogenase, peroxisomal" ytyel054c 40,3,0,0 "RPL12A" "60S large subunit ribosomal protein L12.e" 5,1,0,0 "RPL12A" "60S large subunit ribosomal protein L12.e" ytynr034w - 4,3,3,0 "SOL1" "multicopy suppressor of LOS1-1" ytygl154c - 1,1,1,0 "LYS5" "L-aminoadipate-semialdehyde dehydrogenase, small subunit" 40,3,0,0 "LYS5" "L-aminoadipate-semialdehyde dehydrogenase, small subunit" ytyor020c - 40,16,0,0 "HSP10" "chaperonin, mitochondrial" 6,4,0,0 "HSP10" "chaperonin, mitochondrial" ytymr101c - 30,1,0,0 "SRT1" "cis-prenyltransferase homologue" 6,7,0,0 "SRT1" "cis-prenyltransferase homologue" ytynl306w 40,16,0,0 "MRPS18" "ribosomal protein of the small subunit, mitochondrial" 5,1,0,0 "MRPS18" "ribosomal protein of the small subunit, mitochondrial" ytypr166c 40,16,0,0 "MRP2" "ribosomal protein S14" 5,1,0,0 "MRP2" "ribosomal protein S14" ytyhr163w - 4,3,3,0 "SOL3" "possible 6-phosphogluconolactonase" ytygl103w 40,3,0,0 "RPL28" "60S large subunit ribosomal protein L27a.e" 5,1,0,0 "RPL28" "60S large subunit ribosomal protein L27a.e" ytynl256w - 1,7,1,0 "FOL1" "Dihydroneopterin aldolase, dihydro-6-hydroxymethylpterin pyrophosphokinase, dihydropteroate synthetase" ytylr179c - 3,3,1,0 "null" "similarity to TFS1P" Validation Accuracy: 5/13 (38.46%) Validation Frequency class '5/1/0/0': 42/856 (4.91%) Evaluation on propertest data (1309 items): ytycr046c 2,13,0,0 "IMG1" "ribosomal protein, mitochondrial" 40,16,0,0 "IMG1" "ribosomal protein, mitochondrial" 5,1,0,0 "IMG1" "ribosomal protein, mitochondrial" ytynl284c 40,16,0,0 "MRPL10" "ribosomal protein of the large subunit, mitochondrial" 5,1,0,0 "MRPL10" "ribosomal protein of the large subunit, mitochondrial" ytydr418w 40,3,0,0 "RPL12B" "60S large subunit ribosomal protein L12.e" 5,1,0,0 "RPL12B" "60S large subunit ribosomal protein L12.e" ytykl067w - 1,3,99,0 "YNK1" "nucleoside diphosphate kinase" 40,3,0,0 "YNK1" "nucleoside diphosphate kinase" ytyfl017c - 3,3,1,0 "GNA1" "essential acetyltransferase" 40,1,0,0 "GNA1" "essential acetyltransferase" ytynl072w - 1,3,16,0 "RNH35" "RNase H(35), a 35 kDa ribonuclease H" ytydr322w 40,16,0,0 "MRPL35" "ribosomal protein YmL35 of the large subunit, mitochondrial" 5,1,0,0 "MRPL35" "ribosomal protein YmL35 of the large subunit, mitochondrial" ytyjl191w 40,3,0,0 "RPS14B" "40S small subunit ribosomal protein S14.e.B" 5,1,0,0 "RPS14B" "40S small subunit ribosomal protein S14.e.B" ytydr115w 5,1,0,0 "null" "similarity to bacterial ribosomal L34 proteins" ytydr050c - 1,5,1,0 "TPI1" "triose-phosphate isomerase" 2,1,0,0 "TPI1" "triose-phosphate isomerase" 40,3,0,0 "TPI1" "triose-phosphate isomerase" ytykl192c - 1,6,1,0 "ACP1" "mitochonrial acyl-carrier protein" 40,16,0,0 "ACP1" "mitochonrial acyl-carrier protein" 67,13,0,0 "ACP1" "mitochonrial acyl-carrier protein" ytynl069c 40,3,0,0 "RPL16B" "60S large subunit ribosomal protein" 5,1,0,0 "RPL16B" "60S large subunit ribosomal protein" ytynl185c 40,16,0,0 "MRPL19" "ribosomal protein of the large subunit, mitochondrial" 5,1,0,0 "MRPL19" "ribosomal protein of the large subunit, mitochondrial" Propertest Accuracy: 8/13 (61.54%) Propertest Frequency class '5/1/0/0': 81/1309 (6.19%) New (unknown) data (856 items): ytydr391c - 99,0,0,0 "null" "strong similarity to hypothetical protein YOR013w" ytyir042c - 99,0,0,0 "null" "weak similarity to B.licheniformi hypothetical protein P20" ytylr011w - 99,0,0,0 "LOT6" "weak similarity to E.coli hypothetical 20.4 kDa protein" ytypr073c - 98,0,0,0 "LTP1" "protein-tyrosine-phosphatase" ------------------ Rule 1134: seq_aa_rat_pair_w_h <= 0.132 seq_cai > 0.59 -> class 5/1/0/0 "ribosome biogenesis" Evaluation on training data (1658 items): ytyer131w 40,3,0,0 "RPS26B" "40S small subunit ribosomal protein S26e-c5" 5,1,0,0 "RPS26B" "40S small subunit ribosomal protein S26e-c5" ytyel034w - 1,3,16,0 "HYP2" "translation initiation factor eIF5A.1" 40,3,0,0 "HYP2" "translation initiation factor eIF5A.1" 5,4,0,0 "HYP2" "translation initiation factor eIF5A.1" ytyer117w 40,3,0,0 "RPL23B" "ribosomal protein L23.e" 5,1,0,0 "RPL23B" "ribosomal protein L23.e" ytyil052c 40,3,0,0 "RPL34B" "ribosomal protein L34.e" 5,1,0,0 "RPL34B" "ribosomal protein L34.e" ytybr181c 40,3,0,0 "RPS6B" "ribosomal protein S6.e" 5,1,0,0 "RPS6B" "ribosomal protein S6.e" ytyil133c 40,3,0,0 "RPL16A" "60S large subunit ribosomal protein" 5,1,0,0 "RPL16A" "60S large subunit ribosomal protein" ytyfr032c-a 40,3,0,0 "RPL29" "60S large subunit ribosomal protein" 5,1,0,0 "RPL29" "60S large subunit ribosomal protein" ytyhr021c 40,3,0,0 "RPS27B" "ribosomal protein S27.e" 5,1,0,0 "RPS27B" "ribosomal protein S27.e" ytynl030w - 4,5,1,4 "HHF2" "histone H4" 40,10,3,0 "HHF2" "histone H4" ytybl087c 40,3,0,0 "RPL23A" "60S large subunit ribosomal protein L23.e" 5,1,0,0 "RPL23A" "60S large subunit ribosomal protein L23.e" ytybr011c - 1,4,1,0 "IPP1" "inorganic pyrophosphatase, cytoplasmic" 40,3,0,0 "IPP1" "inorganic pyrophosphatase, cytoplasmic" ytydl191w 40,3,0,0 "RPL35A" "60S large subunit ribosomal protein" 5,1,0,0 "RPL35A" "60S large subunit ribosomal protein" ytyor182c 40,3,0,0 "RPS30B" "ribosomal protein S30" 5,1,0,0 "RPS30B" "ribosomal protein S30" ytygr148c 40,3,0,0 "RPL24B" "60S large subunit ribosomal protein L24.e.B" 5,1,0,0 "RPL24B" "60S large subunit ribosomal protein L24.e.B" ytydr450w 40,3,0,0 "RPS18A" "ribosomal protein S18.e.c4" 5,1,0,0 "RPS18A" "ribosomal protein S18.e.c4" ytylr029c 40,3,0,0 "RPL15A" "60s large subunit ribosomal protein L15.e.c12" 5,1,0,0 "RPL15A" "60s large subunit ribosomal protein L15.e.c12" ytygl147c 40,3,0,0 "RPL9A" "ribosomal protein L9.e" 5,1,0,0 "RPL9A" "ribosomal protein L9.e" ytybr189w 40,3,0,0 "RPS9B" "ribosomal protein S9.e.B" 5,1,0,0 "RPS9B" "ribosomal protein S9.e.B" ytydr025w 40,3,0,0 "RPS11A" "ribosomal protein S11.e" 5,1,0,0 "RPS11A" "ribosomal protein S11.e" ytybr031w 40,3,0,0 "RPL4A" "ribosomal protein" 5,1,0,0 "RPL4A" "ribosomal protein" ytykl180w 40,3,0,0 "RPL17A" "ribosomal protein L17.e" 5,1,0,0 "RPL17A" "ribosomal protein L17.e" ytylr061w 5,1,0,0 "RPL22A" "ribosomal protein" ytylr048w 40,3,0,0 "RPS0B" "40S ribosomal protein p40 homolog B" 5,1,0,0 "RPS0B" "40S ribosomal protein p40 homolog B" 6,10,0,0 "RPS0B" "40S ribosomal protein p40 homolog B" ytypr080w - 40,3,0,0 "TEF1" "translation elongation factor eEF1 alpha-A chain, cytosolic" 5,4,0,0 "TEF1" "translation elongation factor eEF1 alpha-A chain, cytosolic" ytybr084c-a 40,3,0,0 "RPL19A" "60S large subunit ribosomal protein L19.e" 5,1,0,0 "RPL19A" "60S large subunit ribosomal protein L19.e" ytyhr141c 40,3,0,0 "RPL42B" "ribosomal protein L36a.e" 5,1,0,0 "RPL42B" "ribosomal protein L36a.e" ytyhl046c - 11,1,0,0 "null" "strong similarity to members of the SRP1P/TIP1P family" ytyer056c-a 40,3,0,0 "RPL34A" "ribosomal protein L34" 5,1,0,0 "RPL34A" "ribosomal protein L34" ytyor369c 40,3,0,0 "RPS12" "40S small subunit acidic ribosomal protein S12" 5,1,0,0 "RPS12" "40S small subunit acidic ribosomal protein S12" ytydr224c - 4,5,1,4 "HTB1" "histone H2B" 40,10,3,0 "HTB1" "histone H2B" ytycr012w - 1,5,1,0 "PGK1" "phosphoglycerate kinase" 2,1,0,0 "PGK1" "phosphoglycerate kinase" 40,3,0,0 "PGK1" "phosphoglycerate kinase" ytydl061c 40,3,0,0 "RPS29B" "ribosomal protein S29.e.B" 5,1,0,0 "RPS29B" "ribosomal protein S29.e.B" ytydr064w 40,3,0,0 "RPS13" "ribosomal protein" 5,1,0,0 "RPS13" "ribosomal protein" ytyml026c 40,3,0,0 "RPS18B" "ribosomal protein S18.e.c13" 5,1,0,0 "RPS18B" "ribosomal protein S18.e.c13" ytylr406c 40,3,0,0 "RPL31B" "60S large subunit ribosomal protein L31.e.c12" 5,1,0,0 "RPL31B" "60S large subunit ribosomal protein L31.e.c12" ytylr340w 40,3,0,0 "RPP0" "acidic ribosomal protein L10.e" 5,1,0,0 "RPP0" "acidic ribosomal protein L10.e" ytygl189c 40,3,0,0 "RPS26A" "40S small subunit ribosomal protein S26e.c7" 5,1,0,0 "RPS26A" "40S small subunit ribosomal protein S26e.c7" ytyal003w - 40,3,0,0 "EFB1" "translation elongation factor eEF1beta" 5,4,2,0 "EFB1" "translation elongation factor eEF1beta" ytylr167w 40,3,0,0 "RPS31" "ubiquitin/40S small subunit ribosomal protein" 5,1,0,0 "RPS31" "ubiquitin/40S small subunit ribosomal protein" 6,13,1,0 "RPS31" "ubiquitin/40S small subunit ribosomal protein" ytygl030w 40,3,0,0 "RPL30" "60S large subunit ribosomal protein L30.e" 5,1,0,0 "RPL30" "60S large subunit ribosomal protein L30.e" ytyal005c - 11,1,0,0 "SSA1" "heat shock protein of HSP70 family, cytosolic" 40,3,0,0 "SSA1" "heat shock protein of HSP70 family, cytosolic" 6,1,0,0 "SSA1" "heat shock protein of HSP70 family, cytosolic" 6,4,0,0 "SSA1" "heat shock protein of HSP70 family, cytosolic" 8,1,0,0 "SSA1" "heat shock protein of HSP70 family, cytosolic" ytyml028w - 11,7,0,0 "TSA1" "thiol-specific antioxidant" 40,3,0,0 "TSA1" "thiol-specific antioxidant" ytylr249w - 30,1,0,0 "YEF3" "translation elongation factor eEF3" 40,3,0,0 "YEF3" "translation elongation factor eEF3" 5,4,0,0 "YEF3" "translation elongation factor eEF3" ytylr344w 40,3,0,0 "RPL26A" "60S large subunit ribosomal protein" 5,1,0,0 "RPL26A" "60S large subunit ribosomal protein" ytydl082w 40,3,0,0 "RPL13A" "60S large subunit ribosomal protein L13" 5,1,0,0 "RPL13A" "60S large subunit ribosomal protein L13" ytydr500c 40,3,0,0 "RPL37B" "ribosomal protein L.37.e" 5,1,0,0 "RPL37B" "ribosomal protein L.37.e" ytyor312c 40,3,0,0 "RPL20B" "60S large subunit ribosomal protein" 5,1,0,0 "RPL20B" "60S large subunit ribosomal protein" ytydl229w - 40,3,0,0 "SSB1" "heat shock protein of HSP70 family" 5,99,0,0 "SSB1" "heat shock protein of HSP70 family" ytynl178w 40,3,0,0 "RPS3" "ribosomal protein S3.e" 5,1,0,0 "RPS3" "ribosomal protein S3.e" ytyhr010w 40,3,0,0 "RPL27A" "60S large subunit ribosomal protein L27.e" 5,1,0,0 "RPL27A" "60S large subunit ribosomal protein L27.e" ytyor234c 5,1,0,0 "RPL33B" "ribosomal protein L35a.e.c15" ytygr214w 14,4,3,1 "RPS0A" "40S ribosomal protein p40 homolog A" 40,3,0,0 "RPS0A" "40S ribosomal protein p40 homolog A" 5,1,0,0 "RPS0A" "40S ribosomal protein p40 homolog A" 6,10,0,0 "RPS0A" "40S ribosomal protein p40 homolog A" ytykr057w 40,3,0,0 "RPS21A" "ribosomal protein S21.e" 5,1,0,0 "RPS21A" "ribosomal protein S21.e" ytyjl177w 40,3,0,0 "RPL17B" "60s large subunit ribosomal protein L17.e" 5,1,0,0 "RPL17B" "60s large subunit ribosomal protein L17.e" ytykl056c 40,3,0,0 "null" "strong similarity to human IgE-dependent histamine-releasing factor" 5,1,0,0 "null" "strong similarity to human IgE-dependent histamine-releasing factor" ytybl092w 40,3,0,0 "RPL32" "60S large subunit ribosomal protein L32.e" 5,1,0,0 "RPL32" "60S large subunit ribosomal protein L32.e" ytykl096w-a - 40,1,0,0 "CWP2" "cell wall mannoprotein" ytykl152c - 1,5,1,0 "GPM1" "phosphoglycerate mutase" 2,1,0,0 "GPM1" "phosphoglycerate mutase" 40,3,0,0 "GPM1" "phosphoglycerate mutase" ytybr191w 40,3,0,0 "RPL21A" "ribosomal protein L21.e" 5,1,0,0 "RPL21A" "ribosomal protein L21.e" ytylr448w 40,3,0,0 "RPL6B" "60S large subunit ribosomal protein" 5,1,0,0 "RPL6B" "60S large subunit ribosomal protein" ytypr132w 40,3,0,0 "RPS23B" "40S small subunit ribosomal protein S23.e" 5,1,0,0 "RPS23B" "40S small subunit ribosomal protein S23.e" ytyhl015w 40,3,0,0 "RPS20" "ribosomal protein" 5,1,0,0 "RPS20" "ribosomal protein" ytylr037c - 40,1,0,0 "DAN2" "strong similarity to members of the SRP1P/TIP1P family" ytypl131w 40,3,0,0 "RPL5" "60S large subunit ribosomal protein L5.e" 5,1,0,0 "RPL5" "60S large subunit ribosomal protein L5.e" ytyil148w 40,3,0,0 "RPL40A" "ubiquitin" 5,1,0,0 "RPL40A" "ubiquitin" 6,13,1,0 "RPL40A" "ubiquitin" ytyjr123w 40,3,0,0 "RPS5" "ribosomal protein S5.e" 5,1,0,0 "RPS5" "ribosomal protein S5.e" ytydr447c 40,3,0,0 "RPS17B" "ribosomal protein S17.e.B" 5,1,0,0 "RPS17B" "ribosomal protein S17.e.B" ytygl076c 40,3,0,0 "RPL7A" "60S large subunit ribosomal protein L7.e.A" 5,1,0,0 "RPL7A" "60S large subunit ribosomal protein L7.e.A" ytylr134w - 1,5,1,0 "PDC5" "pyruvate decarboxylase, isozyme 2" 2,16,0,0 "PDC5" "pyruvate decarboxylase, isozyme 2" 40,3,0,0 "PDC5" "pyruvate decarboxylase, isozyme 2" ytygr254w - 1,5,1,0 "ENO1" "enolase I (2-phosphoglycerate dehydratase)" 2,1,0,0 "ENO1" "enolase I (2-phosphoglycerate dehydratase)" 40,3,0,0 "ENO1" "enolase I (2-phosphoglycerate dehydratase)" ytynl301c 40,3,0,0 "RPL18B" "60S large subunit ribosomal protein L18.e" 5,1,0,0 "RPL18B" "60S large subunit ribosomal protein L18.e" ytylr150w - 1,5,4,0 "STM1" "specific affinity for guanine-rich quadruplex nucleic acids" 10,1,99,0 "STM1" "specific affinity for guanine-rich quadruplex nucleic acids" ytydr385w - 40,3,0,0 "EFT2" "translation elongation factor eEF2" 5,4,0,0 "EFT2" "translation elongation factor eEF2" ytyor293w 40,3,0,0 "RPS10A" "ribosomal protein S10.e" 5,1,0,0 "RPS10A" "ribosomal protein S10.e" ytydr134c - 40,1,0,0 "null" "strong similarity to FLO1P, FLO5P, FLO9P and YLR110c" ytykl006w 40,3,0,0 "RPL14A" "ribosomal protein" 5,1,0,0 "RPL14A" "ribosomal protein" ytynl067w 40,3,0,0 "RPL9B" "ribosomal protein L9.e.c14" 5,1,0,0 "RPL9B" "ribosomal protein L9.e.c14" ytybr301w - 40,1,0,0 "DAN3" "cell wall mannoprotein" ytyol120c 40,3,0,0 "RPL18A" "60S large subunit ribosomal protein S18.e" 5,1,0,0 "RPL18A" "60S large subunit ribosomal protein S18.e" ytymr116c 2,16,0,0 "ASC1" "40S small subunit ribosomal protein" 40,3,0,0 "ASC1" "40S small subunit ribosomal protein" 5,1,0,0 "ASC1" "40S small subunit ribosomal protein" 5,4,0,0 "ASC1" "40S small subunit ribosomal protein" ytyil018w 40,3,0,0 "RPL2B" "60S large subunit ribosomal protein L8.e" 5,1,0,0 "RPL2B" "60S large subunit ribosomal protein L8.e" ytycr104w - 11,1,0,0 "PAU3" "strong similarity to members of the SRP1/TIP1P family" ytyfr031c-a 5,1,0,0 "RPL2A" "ribosomal protein L8.e" ytyhr174w - 1,5,1,0 "ENO2" "enolase II (2-phosphoglycerate dehydratase)" 2,1,0,0 "ENO2" "enolase II (2-phosphoglycerate dehydratase)" 40,3,0,0 "ENO2" "enolase II (2-phosphoglycerate dehydratase)" ytydl075w 40,3,0,0 "RPL31A" "60S large subunit ribosomal protein L31.e" 5,1,0,0 "RPL31A" "60S large subunit ribosomal protein L31.e" Training Accuracy: 62/85 (72.94%) Training Frequency class '5/1/0/0': 92/1658 (5.55%) Evaluation on validation data (856 items): ytyjl190c 40,3,0,0 "RPS22A" "ribosomal protein S15a.e.c10" 5,1,0,0 "RPS22A" "ribosomal protein S15a.e.c10" ytydl078c - 1,5,1,0 "MDH3" "malate dehydrogenase, peroxisomal" 1,6,7,0 "MDH3" "malate dehydrogenase, peroxisomal" 2,99,0,0 "MDH3" "malate dehydrogenase, peroxisomal" 40,19,0,0 "MDH3" "malate dehydrogenase, peroxisomal" ytyhl001w 40,3,0,0 "RPL14B" "ribosomal protein" 5,1,0,0 "RPL14B" "ribosomal protein" ytylr110c - 30,1,0,0 "CCW12" "strong similarity to FLO1P" ytyol161c - 11,1,0,0 "null" "strong similarity to members of the SRP1P/TIP1P family" ytydr012w 40,3,0,0 "RPL4B" "ribosomal protein L4.e.B" 5,1,0,0 "RPL4B" "ribosomal protein L4.e.B" ytyel054c 40,3,0,0 "RPL12A" "60S large subunit ribosomal protein L12.e" 5,1,0,0 "RPL12A" "60S large subunit ribosomal protein L12.e" ytylr461w - 11,1,0,0 "PAU4" "strong similarity to members of the TIR1P/TIP1P family" ytyll024c - 6,1,0,0 "SSA2" "heat shock protein of HSP70 family, cytosolic" 6,4,0,0 "SSA2" "heat shock protein of HSP70 family, cytosolic" 8,4,0,0 "SSA2" "heat shock protein of HSP70 family, cytosolic" 8,7,0,0 "SSA2" "heat shock protein of HSP70 family, cytosolic" ytyjl189w 40,3,0,0 "RPL39" "60S large subunit ribosomal protein L39.e" 5,1,0,0 "RPL39" "60S large subunit ribosomal protein L39.e" ytyal038w - 1,5,1,0 "CDC19" "pyruvate kinase" 2,1,0,0 "CDC19" "pyruvate kinase" 40,3,0,0 "CDC19" "pyruvate kinase" ytyor096w 40,3,0,0 "RPS7A" "ribosomal protein" 5,1,0,0 "RPS7A" "ribosomal protein" ytypl037c - 1,5,4,0 "EGD1" "GAL4 DNA-binding enhancer protein" 4,5,1,4 "EGD1" "GAL4 DNA-binding enhancer protein" 40,10,0,0 "EGD1" "GAL4 DNA-binding enhancer protein" 6,4,0,0 "EGD1" "GAL4 DNA-binding enhancer protein" ytylr044c - 1,5,1,0 "PDC1" "pyruvate decarboxylase, isozyme 1" 2,13,0,0 "PDC1" "pyruvate decarboxylase, isozyme 1" 2,16,0,0 "PDC1" "pyruvate decarboxylase, isozyme 1" 40,3,0,0 "PDC1" "pyruvate decarboxylase, isozyme 1" ytyhr203c 40,3,0,0 "RPS4B" "ribosomal protein S4.e.c8" 5,1,0,0 "RPS4B" "ribosomal protein S4.e.c8" ytyhl033c 40,3,0,0 "RPL8A" "60S large subunit ribosomal protein L7a.e.A" 5,1,0,0 "RPL8A" "60S large subunit ribosomal protein L7a.e.A" ytylr388w 40,3,0,0 "RPS29A" "ribosomal protein S29.e.A" 5,1,0,0 "RPS29A" "ribosomal protein S29.e.A" ytyjr047c - 40,3,0,0 "ANB1" "translation initiation factor eIF5A.2" 5,4,0,0 "ANB1" "translation initiation factor eIF5A.2" ytynl302c 40,3,0,0 "RPS19B" "40S small subunit ribosomal protein S19.e" 5,1,0,0 "RPS19B" "40S small subunit ribosomal protein S19.e" ytygr192c - 1,5,1,0 "TDH3" "glyceraldehyde-3-phosphate dehydrogenase 3" 2,1,0,0 "TDH3" "glyceraldehyde-3-phosphate dehydrogenase 3" 40,3,0,0 "TDH3" "glyceraldehyde-3-phosphate dehydrogenase 3" ytyjr145c 40,3,0,0 "RPS4A" "ribosomal protein S4.e.c10" 5,1,0,0 "RPS4A" "ribosomal protein S4.e.c10" ytydl130w 40,3,0,0 "RPP1B" "60S large subunit acidic ribosomal protein L44prime" 5,1,0,0 "RPP1B" "60S large subunit acidic ribosomal protein L44prime" ytynr076w - 11,1,0,0 "PAU6" "strong similarity to members of the TIR1P/TIP1P family" ytylr075w 3,3,1,0 "RPL10" "60S large subunit ribosomal protein" 40,3,0,0 "RPL10" "60S large subunit ribosomal protein" 5,1,0,0 "RPL10" "60S large subunit ribosomal protein" 6,10,0,0 "RPL10" "60S large subunit ribosomal protein" ytynl162w 40,3,0,0 "RPL42A" "ribosomal protein L36a.e" 5,1,0,0 "RPL42A" "ribosomal protein L36a.e" ytylr325c 40,3,0,0 "RPL38" "60S large subunit ribosomal protein" 5,1,0,0 "RPL38" "60S large subunit ribosomal protein" ytyol121c 40,3,0,0 "RPS19A" "40S small subunit ribosomal protein S19.e" 5,1,0,0 "RPS19A" "40S small subunit ribosomal protein S19.e" ytyer102w 40,3,0,0 "RPS8B" "ribosomal protein S8.e" 5,1,0,0 "RPS8B" "ribosomal protein S8.e" ytylr333c 40,3,0,0 "RPS25B" "ribosomal protein S25.e.c12" 5,1,0,0 "RPS25B" "ribosomal protein S25.e.c12" ytydl136w 40,3,0,0 "RPL35B" "60S large subunit ribosomal protein" 5,1,0,0 "RPL35B" "60S large subunit ribosomal protein" ytyor133w - 40,3,0,0 "EFT1" "translation elongation factor eEF2" 5,4,0,0 "EFT1" "translation elongation factor eEF2" ytygl103w 40,3,0,0 "RPL28" "60S large subunit ribosomal protein L27a.e" 5,1,0,0 "RPL28" "60S large subunit ribosomal protein L27a.e" ytynl096c 40,3,0,0 "RPS7B" "strong similarity to ribosomal protein S7" 5,1,0,0 "RPS7B" "strong similarity to ribosomal protein S7" ytypr102c 40,3,0,0 "RPL11A" "ribosomal protein L11.e" 5,1,0,0 "RPL11A" "ribosomal protein L11.e" ytylr441c 14,4,3,3 "RPS1A" "ribosomal protein S3a.e" 40,3,0,0 "RPS1A" "ribosomal protein S3a.e" 5,1,0,0 "RPS1A" "ribosomal protein S3a.e" Validation Accuracy: 23/35 (65.71%) Validation Frequency class '5/1/0/0': 42/856 (4.91%) Evaluation on propertest data (1309 items): ytykl060c - 1,5,1,0 "FBA1" "fructose-bisphosphate aldolase" 2,1,0,0 "FBA1" "fructose-bisphosphate aldolase" 40,3,0,0 "FBA1" "fructose-bisphosphate aldolase" ytylr355c - 1,1,1,0 "ILV5" "ketol-acid reducto-isomerase" 40,16,0,0 "ILV5" "ketol-acid reducto-isomerase" ytygl123w 40,3,0,0 "RPS2" "40S small subunit ribosomal protein" 5,1,0,0 "RPS2" "40S small subunit ribosomal protein" ytyil053w - 1,5,1,0 "RHR2" "DL-glycerol phosphatase" ytypl198w 40,3,0,0 "RPL7B" "60S large subunit ribosomal protein" 5,1,0,0 "RPL7B" "60S large subunit ribosomal protein" ytyml073c 40,3,0,0 "RPL6A" "60S large subunit ribosomal protein" 5,1,0,0 "RPL6A" "60S large subunit ribosomal protein" ytydr418w 40,3,0,0 "RPL12B" "60S large subunit ribosomal protein L12.e" 5,1,0,0 "RPL12B" "60S large subunit ribosomal protein L12.e" ytybr010w - 4,5,1,4 "HHT1" "histone H3" 40,10,3,0 "HHT1" "histone H3" ytypr043w 40,3,0,0 "RPL43A" "ribosomal protein L37a.e" 5,1,0,0 "RPL43A" "ribosomal protein L37a.e" ytyfl014w - 1,5,1,0 "HSP12" "heat shock protein" 1,6,7,0 "HSP12" "heat shock protein" 11,1,0,0 "HSP12" "heat shock protein" 13,11,3,13 "HSP12" "heat shock protein" 3,1,5,1 "HSP12" "heat shock protein" ytyer074w 40,3,0,0 "RPS24A" "40s small subunit ribosomal protein S24.e" 5,1,0,0 "RPS24A" "40s small subunit ribosomal protein S24.e" ytygr085c 40,3,0,0 "RPL11B" "ribosomal protein" 5,1,0,0 "RPL11B" "ribosomal protein" ytyer091c - 1,1,1,0 "MET6" "5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase" 40,3,0,0 "MET6" "5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase" ytypl220w 40,3,0,0 "RPL1A" "ribosomal protein" 5,1,0,0 "RPL1A" "ribosomal protein" ytyll045c 40,3,0,0 "RPL8B" "60s large subunit ribosomal protein L7a.e.B" 5,1,0,0 "RPL8B" "60s large subunit ribosomal protein L7a.e.B" ytymr194w 40,3,0,0 "RPL36A" "60S large subunit ribosomal protein" 5,1,0,0 "RPL36A" "60S large subunit ribosomal protein" ytypl143w 40,3,0,0 "RPL33A" "ribosomal protein L35a.e.c16" 5,1,0,0 "RPL33A" "ribosomal protein L35a.e.c16" ytyjl052w - 1,5,1,0 "TDH1" "glyceraldehyde-3-phosphate dehydrogenase 1" 2,1,0,0 "TDH1" "glyceraldehyde-3-phosphate dehydrogenase 1" 40,3,0,0 "TDH1" "glyceraldehyde-3-phosphate dehydrogenase 1" ytyjl136c 40,3,0,0 "RPS21B" "40S small subunit ribosomal protein S21.e" 5,1,0,0 "RPS21B" "40S small subunit ribosomal protein S21.e" ytybr118w - 40,3,0,0 "TEF2" "translation elongation factor eEF1 alpha-A chain, cytosolic" 5,4,0,0 "TEF2" "translation elongation factor eEF1 alpha-A chain, cytosolic" ytyjl138c - 40,3,0,0 "TIF2" "translation initiation factor eIF4A" 5,4,0,0 "TIF2" "translation initiation factor eIF4A" ytyml024w 40,3,0,0 "RPS17A" "ribosomal protein S17.e.A" 5,1,0,0 "RPS17A" "ribosomal protein S17.e.A" ytydr225w - 4,5,1,4 "HTA1" "histone H2A" 40,10,3,0 "HTA1" "histone H2A" ytyjr092w - 14,4,3,1 "BUD4" "budding protein" 40,1,0,0 "BUD4" "budding protein" ytygl031c 40,3,0,0 "RPL24A" "60S large subunit ribosomal protein L24.e.A" 5,1,0,0 "RPL24A" "60S large subunit ribosomal protein L24.e.A" ytycr031c 40,3,0,0 "RPS14A" "40S Ribosomal protein S14.e" 5,1,0,0 "RPS14A" "40S Ribosomal protein S14.e" ytylr287c-a 40,3,0,0 "RPS30A" "40S small subunit ribosomal protein" 5,1,0,0 "RPS30A" "40S small subunit ribosomal protein" ytygr034w 40,3,0,0 "RPL26B" "60S large subunit ribosomal protein" 5,1,0,0 "RPL26B" "60S large subunit ribosomal protein" ytybl072c 40,3,0,0 "RPS8A" "ribosomal protein S8.e" 5,1,0,0 "RPS8A" "ribosomal protein S8.e" ytydl081c 40,3,0,0 "RPP1A" "60S large subunit acidic ribosomal protein a1" 5,1,0,0 "RPP1A" "60S large subunit acidic ribosomal protein a1" 5,4,0,0 "RPP1A" "60S large subunit acidic ribosomal protein a1" ytymr142c 40,3,0,0 "RPL13B" "60S large subunit ribosomal protein" 5,1,0,0 "RPL13B" "60S large subunit ribosomal protein" ytyol039w 40,3,0,0 "RPP2A" "acidic ribosomal protein P2.beta" 5,1,0,0 "RPP2A" "acidic ribosomal protein P2.beta" ytylr185w 40,3,0,0 "RPL37A" "ribosomal protein L37.e" 5,1,0,0 "RPL37A" "ribosomal protein L37.e" ytyer043c - 1,7,1,0 "SAH1" "S-adenosyl-L-homocysteine hydrolase" ytydl083c 40,3,0,0 "RPS16B" "ribosomal protein S16.e" 5,1,0,0 "RPS16B" "ribosomal protein S16.e" ytymr143w 40,3,0,0 "RPS16A" "ribosomal protein S16.e" 5,1,0,0 "RPS16A" "ribosomal protein S16.e" ytyhr183w - 1,5,1,0 "GND1" "6-phosphogluconate dehydrogenase" 2,7,0,0 "GND1" "6-phosphogluconate dehydrogenase" 40,3,0,0 "GND1" "6-phosphogluconate dehydrogenase" ytyel026w - 4,5,5,1 "SNU13" "component of the U4/U6.U5 snRNP" ytygr118w 40,3,0,0 "RPS23A" "40S small subunit ribosomal protein S23.e" 5,1,0,0 "RPS23A" "40S small subunit ribosomal protein S23.e" ytyml063w 40,3,0,0 "RPS1B" "ribosomal protein S3a.e" 5,1,0,0 "RPS1B" "ribosomal protein S3a.e" ytymr242c 40,3,0,0 "RPL20A" "60s large subunit ribosomal protein" 5,1,0,0 "RPL20A" "60s large subunit ribosomal protein" ytykr059w - 40,3,0,0 "TIF1" "translation initiation factor 4A" 5,4,0,0 "TIF1" "translation initiation factor 4A" ytyjr009c - 1,5,1,0 "TDH2" "glyceraldehyde-3-phosphate dehydrogenase 2" 2,1,0,0 "TDH2" "glyceraldehyde-3-phosphate dehydrogenase 2" 40,3,0,0 "TDH2" "glyceraldehyde-3-phosphate dehydrogenase 2" ytygl135w 40,3,0,0 "RPL1B" "60S large subunit ribosomal protein" 5,1,0,0 "RPL1B" "60S large subunit ribosomal protein" ytyel049w - 11,1,0,0 "PAU2" "strong similarity to members of the SRP1P/TIP1P family" ytybr196c - 1,5,1,0 "PGI1" "glucose-6-phosphate isomerase" 2,1,0,0 "PGI1" "glucose-6-phosphate isomerase" 40,3,0,0 "PGI1" "glucose-6-phosphate isomerase" ytykr094c 40,3,0,0 "RPL40B" "ubiquitin" 5,1,0,0 "RPL40B" "ubiquitin" 6,13,1,0 "RPL40B" "ubiquitin" ytyil069c 40,3,0,0 "RPS24B" "40S small subunit ribosomal protein S24.e" 5,1,0,0 "RPS24B" "40S small subunit ribosomal protein S24.e" ytybr009c - 4,5,1,4 "HHF1" "histone H4" 40,10,3,0 "HHF1" "histone H4" ytydr382w 40,3,0,0 "RPP2B" "60S large subunit acidic ribosomal protein" 5,1,0,0 "RPP2B" "60S large subunit acidic ribosomal protein" ytydr050c - 1,5,1,0 "TPI1" "triose-phosphate isomerase" 2,1,0,0 "TPI1" "triose-phosphate isomerase" 40,3,0,0 "TPI1" "triose-phosphate isomerase" ytycr024c-a - 13,1,1,3 "PMP1" "H+-ATPase subunit, plasma membrane" 40,2,0,0 "PMP1" "H+-ATPase subunit, plasma membrane" 67,4,1,2 "PMP1" "H+-ATPase subunit, plasma membrane" 67,50,22,0 "PMP1" "H+-ATPase subunit, plasma membrane" ytygl253w - 1,5,1,0 "HXK2" "hexokinase II" 1,5,4,0 "HXK2" "hexokinase II" 2,1,0,0 "HXK2" "hexokinase II" 40,10,0,0 "HXK2" "hexokinase II" 40,3,0,0 "HXK2" "hexokinase II" ytypl249c-a 40,3,0,0 "RPL36B" "60S large subunit ribosomal protein" 5,1,0,0 "RPL36B" "60S large subunit ribosomal protein" ytynl209w - 40,3,0,0 "SSB2" "heat shock protein of HSP70 family, cytosolic" 5,99,0,0 "SSB2" "heat shock protein of HSP70 family, cytosolic" ytybl027w 40,3,0,0 "RPL19B" "60S large subunit ribosomal protein L19.e" 5,1,0,0 "RPL19B" "60S large subunit ribosomal protein L19.e" ytyjl223c - 11,1,0,0 "PAU1" "strong similarity to members of the SRP1P/TIP1P family" ytyer011w - 11,1,0,0 "TIR1" "cold-shock induced protein of the TIR1P,TIP1P family" 40,1,0,0 "TIR1" "cold-shock induced protein of the TIR1P,TIP1P family" ytypl090c 40,3,0,0 "RPS6A" "ribosomal protein S6.e" 5,1,0,0 "RPS6A" "ribosomal protein S6.e" ytyol040c 40,3,0,0 "RPS15" "40S small subunit ribosomal protein" 5,1,0,0 "RPS15" "40S small subunit ribosomal protein" ytynl069c 40,3,0,0 "RPL16B" "60S large subunit ribosomal protein" 5,1,0,0 "RPL16B" "60S large subunit ribosomal protein" ytybr048w 40,3,0,0 "RPS11B" "ribosomal protein S11.e.B" 5,1,0,0 "RPS11B" "ribosomal protein S11.e.B" ytydl055c - 1,5,1,0 "PSA1" "mannose-1-phosphate guanyltransferase" 30,1,0,0 "PSA1" "mannose-1-phosphate guanyltransferase" ytygl008c - 13,1,1,3 "PMA1" "H+-transporting P-type ATPase, major isoform, plasma membrane" 40,2,0,0 "PMA1" "H+-transporting P-type ATPase, major isoform, plasma membrane" 67,4,1,2 "PMA1" "H+-transporting P-type ATPase, major isoform, plasma membrane" 67,50,22,0 "PMA1" "H+-transporting P-type ATPase, major isoform, plasma membrane" ytypl079w 40,3,0,0 "RPL21B" "ribosomal protein L21" 5,1,0,0 "RPL21B" "ribosomal protein L21" ytydr155c - 11,1,0,0 "CPH1" "cyclophilin (peptidylprolyl isomerase)" 40,3,0,0 "CPH1" "cyclophilin (peptidylprolyl isomerase)" 6,1,0,0 "CPH1" "cyclophilin (peptidylprolyl isomerase)" ytygr027c 40,3,0,0 "RPS25A" "ribosomal protein S25.e.c7" 5,1,0,0 "RPS25A" "ribosomal protein S25.e.c7" ytyol127w 40,3,0,0 "RPL25" "ribosomal protein L23a.e" 5,1,0,0 "RPL25" "ribosomal protein L23a.e" ytymr230w 40,3,0,0 "RPS10B" "ribosomal protein" 5,1,0,0 "RPS10B" "ribosomal protein" ytybr244w - 11,7,0,0 "GPX2" "glutathione peroxidases" Propertest Accuracy: 41/70 (58.57%) Propertest Frequency class '5/1/0/0': 81/1309 (6.19%) New (unknown) data (856 items): ytyir041w - 99,0,0,0 "null" "similarity to members of the SRP1P/TIP1P family" ytymr325w - 99,0,0,0 "null" "strong similarity to members of the SRP1P/TIP1P family" ytyal068c - 99,0,0,0 "null" "strong similarity to subtelomeric encoded proteins" ytygr294w - 99,0,0,0 "null" "strong similarity to members of the SRP1P/TIP1P family" ytykl224c - 99,0,0,0 "null" "strong similarity to members of the SRP1P/TIP1P family" ytyll025w - 99,0,0,0 "null" "strong similarity to members of the SRP1P/TIP1P family" ytyil176c - 99,0,0,0 "null" "strong similarity to members of the SRP1P/TIP1P family" ytyll064c - 99,0,0,0 "null" "strong similarity to members of the SRP1/TIP1P family" ytynl190w - 99,0,0,0 "null" "weak similarity to MUCIN 1 PRECURSOR Mesocricetus auratus (Golden hamster)" ytydr542w - 99,0,0,0 "null" "strong similarity to subtelomeric encoded proteins" ------------------