Rule 18: cechdeeigagasp_church_below_threshold_in_all_conditions <= 0 beta_dist(_1,b6.1_12.4),coil_dist(_1,b6.2_39.5) = 0 ss(_1,_2,c),coil_len(_2,b3_4),beta_dist(_1,b12.4_19.1),coil_dist(_1,b45.4_50.5),nss(_2,_3,b) = 0 ss(_1,_2,c),ss(_1,_3,b),beta_len(_3,b6_7),coil_len(_2,gte10),nss(_3,_2,c) = 0 ss(_1,_2,c),ss(_1,_3,a),alpha_len(_3,b10_14),coil_len(_2,b4_6),alpha_dist(_1,b27.5_36.2) = 0 ss(_1,_2,c),coil_len(_2,b6_10),beta_dist(_1,b0.0_6.1),nss(_2,_3,b),nss(_3,_4,c) = 0 ss(_1,_2,b),ss(_1,_3,a),alpha_len(_3,b6_10),beta_len(_2,b1_3),coil_dist(_1,b39.5_45.4) = 0 ss(_1,_2,a),alpha_len(_2,b10_14),alpha_dist(_1,b27.5_36.2),nss(_2,_3,c),nss(_3,_4,a) = 0 ss(_1,_2,b),beta_len(_2,b1_3),alpha_dist(_1,b0.0_17.9),beta_dist(_1,gte29.1) = 0 ss(_1,_2,a),ss(_1,_3,a),alpha_len(_2,gte14),beta_dist(_1,gte29.1),nss(_3,_4,b) = 0 cechdeeigagasp_gasch1_Nitrogen_Depletion_4_h <= 0.92 cechdeeigagasp_gasch1_YP_fructose_vs_reference_pool_car_2 <= -0.67 ss(_1,_2,a),alpha_dist(_1,b17.9_27.5),coil_dist(_1,gte57.6),nss(_2,_3,b),nss(_2,_3,b) = 0 ss(_1,_2,a),ss(_1,_3,a),alpha_len(_2,b3_6),alpha_dist(_1,b36.2_47.6),coil_dist(_1,b50.5_57.6) = 0 -> class 2/13/0/0 "respiration" Evaluation on training data (1657 items): ytykl141w 2,13,0,0 "SDH3" "cytochrome b560 subunit of respiratory complex II" 40,16,0,0 "SDH3" "cytochrome b560 subunit of respiratory complex II" ytylr295c 13,1,1,3 "ATP14" "F1F0-ATPase complex, subunit h" 2,13,0,0 "ATP14" "F1F0-ATPase complex, subunit h" 40,16,0,0 "ATP14" "F1F0-ATPase complex, subunit h" 67,50,22,0 "ATP14" "F1F0-ATPase complex, subunit h" 8,4,0,0 "ATP14" "F1F0-ATPase complex, subunit h" ytydl004w 13,1,1,3 "ATP16" "F1F0-ATPase complex, F1 delta subunit" 2,13,0,0 "ATP16" "F1F0-ATPase complex, F1 delta subunit" 40,16,0,0 "ATP16" "F1F0-ATPase complex, F1 delta subunit" 67,50,22,0 "ATP16" "F1F0-ATPase complex, F1 delta subunit" 8,4,0,0 "ATP16" "F1F0-ATPase complex, F1 delta subunit" ytymr256c 2,13,0,0 "COX7" "cytochrome-c oxidase, subunit VII" 40,16,0,0 "COX7" "cytochrome-c oxidase, subunit VII" 6,10,0,0 "COX7" "cytochrome-c oxidase, subunit VII" ytynl052w 2,13,0,0 "COX5A" "cytochrome-c oxidase chain V.A precursor" 40,16,0,0 "COX5A" "cytochrome-c oxidase chain V.A precursor" ytydr377w 2,13,0,0 "ATP17" "ATP synthase complex, subunit f" 40,16,0,0 "ATP17" "ATP synthase complex, subunit f" 6,10,0,0 "ATP17" "ATP synthase complex, subunit f" ytybr039w 13,1,1,3 "ATP3" "F1F0-ATPase complex, F1 gamma subunit" 2,13,0,0 "ATP3" "F1F0-ATPase complex, F1 gamma subunit" 40,16,0,0 "ATP3" "F1F0-ATPase complex, F1 gamma subunit" 67,50,22,0 "ATP3" "F1F0-ATPase complex, F1 gamma subunit" 8,4,0,0 "ATP3" "F1F0-ATPase complex, F1 gamma subunit" ytykl016c 13,1,1,3 "ATP7" "F1F0-ATPase complex, FO D subunit" 2,13,0,0 "ATP7" "F1F0-ATPase complex, FO D subunit" 40,16,0,0 "ATP7" "F1F0-ATPase complex, FO D subunit" 67,50,22,0 "ATP7" "F1F0-ATPase complex, FO D subunit" 8,4,0,0 "ATP7" "F1F0-ATPase complex, FO D subunit" ytynl237w 2,13,0,0 "YTP1" "weak similarity to mitochondrial electron transport proteins" ytydl067c 2,13,0,0 "COX9" "cytochrome-c oxidase chain VIIA" 40,16,0,0 "COX9" "cytochrome-c oxidase chain VIIA" 6,10,0,0 "COX9" "cytochrome-c oxidase chain VIIA" ytyel024w 2,13,0,0 "RIP1" "ubiquinol--cytochrome-c reductase iron-sulfur protein precursor" 40,16,0,0 "RIP1" "ubiquinol--cytochrome-c reductase iron-sulfur protein precursor" ytykl150w 2,13,0,0 "MCR1" "cytochrome-b5 reductase" 40,16,0,0 "MCR1" "cytochrome-b5 reductase" ytyjr121w 13,1,1,3 "ATP2" "F1F0-ATPase complex, F1 beta subunit" 2,13,0,0 "ATP2" "F1F0-ATPase complex, F1 beta subunit" 40,16,0,0 "ATP2" "F1F0-ATPase complex, F1 beta subunit" 67,50,22,0 "ATP2" "F1F0-ATPase complex, F1 beta subunit" 8,4,0,0 "ATP2" "F1F0-ATPase complex, F1 beta subunit" ytypl134c - 67,16,0,0 "ODC1" "similarity to ADP,ATP carrier proteins" 8,4,0,0 "ODC1" "similarity to ADP,ATP carrier proteins" ytydr529c 2,13,0,0 "QCR7" "ubiquinol--cytochrome-c reductase subunit 7" 40,16,0,0 "QCR7" "ubiquinol--cytochrome-c reductase subunit 7" 6,10,0,0 "QCR7" "ubiquinol--cytochrome-c reductase subunit 7" ytyjr048w 2,13,0,0 "CYC1" "cytochrome-c isoform 1" 40,16,0,0 "CYC1" "cytochrome-c isoform 1" ytygl191w 2,13,0,0 "COX13" "cytochrome-c oxidase chain VIa" 40,16,0,0 "COX13" "cytochrome-c oxidase chain VIa" ytypl271w 13,1,1,3 "ATP15" "F1F0-ATPase complex, F1 epsilon subunit" 2,13,0,0 "ATP15" "F1F0-ATPase complex, F1 epsilon subunit" 40,16,0,0 "ATP15" "F1F0-ATPase complex, F1 epsilon subunit" 67,50,22,0 "ATP15" "F1F0-ATPase complex, F1 epsilon subunit" 8,4,0,0 "ATP15" "F1F0-ATPase complex, F1 epsilon subunit" Training Accuracy: 17/18 (94.44%) Training Frequency class '2/13/0/0': 41/1657 (2.47%) Evaluation on validation data (856 items): ytyer053c - 1,4,7,0 "null" "strong similarity to mitochondrial phosphate carrier protein" 67,4,7,0 "null" "strong similarity to mitochondrial phosphate carrier protein" 8,4,0,0 "null" "strong similarity to mitochondrial phosphate carrier protein" ytyel059c-a - 30,16,0,0 "SOM1" "required for mitochondrial IMP1 peptidase function" 40,16,0,0 "SOM1" "required for mitochondrial IMP1 peptidase function" 6,4,0,0 "SOM1" "required for mitochondrial IMP1 peptidase function" 8,4,0,0 "SOM1" "required for mitochondrial IMP1 peptidase function" ytyll009c 13,1,1,1 "COX17" "interacts genetically with SCO1 and SCO2 in cytochrome oxidase assembly" 2,13,0,0 "COX17" "interacts genetically with SCO1 and SCO2 in cytochrome oxidase assembly" 40,16,0,0 "COX17" "interacts genetically with SCO1 and SCO2 in cytochrome oxidase assembly" 40,3,0,0 "COX17" "interacts genetically with SCO1 and SCO2 in cytochrome oxidase assembly" 6,10,0,0 "COX17" "interacts genetically with SCO1 and SCO2 in cytochrome oxidase assembly" ytyal060w - 1,5,1,0 "BDH1" "stereospecific (2R, 3R)-2,3-butanediol dehydrogenase" ytyfr033c 2,13,0,0 "QCR6" "ubiquinol--cytochrome-c reductase 17K protein" 40,16,0,0 "QCR6" "ubiquinol--cytochrome-c reductase 17K protein" ytyor185c - 4,7,0,0 "GSP2" "GTP-binding protein of the RAS superfamily" 40,10,0,0 "GSP2" "GTP-binding protein of the RAS superfamily" 40,3,0,0 "GSP2" "GTP-binding protein of the RAS superfamily" 8,1,0,0 "GSP2" "GTP-binding protein of the RAS superfamily" ytypl230w - 4,99,0,0 "USV1" "similarity to RGM1P, weak similarity to transcription factors" ytyor110w - 1,5,4,0 "TFC7" "TFIIIC (transcription initiation factor) subunit, 55 kDa" 4,1,1,0 "TFC7" "TFIIIC (transcription initiation factor) subunit, 55 kDa" 4,3,1,0 "TFC7" "TFIIIC (transcription initiation factor) subunit, 55 kDa" 40,10,0,0 "TFC7" "TFIIIC (transcription initiation factor) subunit, 55 kDa" ytypl078c 13,1,1,3 "ATP4" "F1F0-ATPase complex, F0 subunit B" 2,13,0,0 "ATP4" "F1F0-ATPase complex, F0 subunit B" 40,16,0,0 "ATP4" "F1F0-ATPase complex, F0 subunit B" 67,50,22,0 "ATP4" "F1F0-ATPase complex, F0 subunit B" 8,4,0,0 "ATP4" "F1F0-ATPase complex, F0 subunit B" ytyjr077c - 1,4,7,0 "MIR1" "phosphate transport protein, mitochondrial (MCF)" 13,1,3,3 "MIR1" "phosphate transport protein, mitochondrial (MCF)" 40,16,0,0 "MIR1" "phosphate transport protein, mitochondrial (MCF)" 67,4,7,0 "MIR1" "phosphate transport protein, mitochondrial (MCF)" 8,4,0,0 "MIR1" "phosphate transport protein, mitochondrial (MCF)" Validation Accuracy: 3/10 (30.00%) Validation Frequency class '2/13/0/0': 17/856 (1.99%) Evaluation on propertest data (1309 items): ytypr120c - 3,1,3,0 "CLB5" "cyclin, B-type" 3,3,1,0 "CLB5" "cyclin, B-type" 3,3,2,0 "CLB5" "cyclin, B-type" ytykl062w - 1,5,4,0 "MSN4" "transcriptional activator" 11,1,0,0 "MSN4" "transcriptional activator" 4,5,1,4 "MSN4" "transcriptional activator" 40,10,0,0 "MSN4" "transcriptional activator" 40,3,0,0 "MSN4" "transcriptional activator" ytyil070c - 40,16,0,0 "MAM33" "mitochondrial acidic matrix protein" ytyil136w - 40,16,0,0 "OM45" "protein of the outer mitochondrial membrane" ytyfl014w - 1,5,1,0 "HSP12" "heat shock protein" 1,6,7,0 "HSP12" "heat shock protein" 11,1,0,0 "HSP12" "heat shock protein" 13,11,3,13 "HSP12" "heat shock protein" 3,1,5,1 "HSP12" "heat shock protein" ytyhl040c - 11,7,0,0 "ARN1" "ferrichrome-type siderophore transporter" 67,28,0,0 "ARN1" "ferrichrome-type siderophore transporter" ytylr395c 2,13,0,0 "COX8" "cytochrome-c oxidase chain VIII" 40,16,0,0 "COX8" "cytochrome-c oxidase chain VIII" ytybl030c - 1,3,19,0 "PET9" "ADP/ATP carrier protein (MCF)" 40,16,0,0 "PET9" "ADP/ATP carrier protein (MCF)" 67,16,0,0 "PET9" "ADP/ATP carrier protein (MCF)" 8,4,0,0 "PET9" "ADP/ATP carrier protein (MCF)" ytynl055c - 40,16,0,0 "POR1" "mitochondrial outer membrane porin" 67,99,0,0 "POR1" "mitochondrial outer membrane porin" 8,4,0,0 "POR1" "mitochondrial outer membrane porin" ytydr298c 13,1,1,3 "ATP5" "F1F0-ATPase complex, OSCP subunit" 2,13,0,0 "ATP5" "F1F0-ATPase complex, OSCP subunit" 40,16,0,0 "ATP5" "F1F0-ATPase complex, OSCP subunit" 67,50,22,0 "ATP5" "F1F0-ATPase complex, OSCP subunit" 8,4,0,0 "ATP5" "F1F0-ATPase complex, OSCP subunit" ytyhr001w-a 2,13,0,0 "QCR10" "ubiquinol--cytochrome-c reductase 8.5 kDa subunit" 40,16,0,0 "QCR10" "ubiquinol--cytochrome-c reductase 8.5 kDa subunit" ytypl013c - 40,16,0,0 "null" "strong similarity to N.crassa mitochondrial ribosomal protein S24" 5,1,0,0 "null" "strong similarity to N.crassa mitochondrial ribosomal protein S24" ytydl181w - 2,99,0,0 "INH1" "inhibitor of mitochondrial ATPase" 40,16,0,0 "INH1" "inhibitor of mitochondrial ATPase" ytybl099w 13,1,1,3 "ATP1" "F1F0-ATPase complex, F1 alpha subunit" 2,13,0,0 "ATP1" "F1F0-ATPase complex, F1 alpha subunit" 40,16,0,0 "ATP1" "F1F0-ATPase complex, F1 alpha subunit" 67,50,22,0 "ATP1" "F1F0-ATPase complex, F1 alpha subunit" 8,4,0,0 "ATP1" "F1F0-ATPase complex, F1 alpha subunit" ytylr038c 2,13,0,0 "COX12" "cytochrome-c oxidase, subunit VIB" 40,16,0,0 "COX12" "cytochrome-c oxidase, subunit VIB" 6,10,0,0 "COX12" "cytochrome-c oxidase, subunit VIB" ytyhr051w 2,13,0,0 "COX6" "cytochrome-c oxidase subunit VI" 40,16,0,0 "COX6" "cytochrome-c oxidase subunit VI" ytybr297w - 1,5,4,0 "MAL33" "maltose fermentation regulatory protein" 4,5,1,4 "MAL33" "maltose fermentation regulatory protein" 40,10,0,0 "MAL33" "maltose fermentation regulatory protein" ytygr008c 2,13,0,0 "STF2" "ATPase stabilizing factor" 30,1,0,0 "STF2" "ATPase stabilizing factor" 40,16,0,0 "STF2" "ATPase stabilizing factor" ytybl045c 2,13,0,0 "COR1" "ubiquinol--cytochrome-c reductase 44K core protein" 40,16,0,0 "COR1" "ubiquinol--cytochrome-c reductase 44K core protein" ytybl064c - 11,7,0,0 "null" "strong similarity to thiol-specific antioxidant enzyme" ytykl043w - 14,4,3,1 "PHD1" "transcription factor" 4,5,1,4 "PHD1" "transcription factor" 40,10,0,0 "PHD1" "transcription factor" Propertest Accuracy: 8/21 (38.10%) Propertest Frequency class '2/13/0/0': 30/1309 (2.29%) New (unknown) data (856 items): ytylr023c - 99,0,0,0 "null" "similarity to S.pombe hypothetical protein SPAC30D11.11" ytycl042w - 99,0,0,0 "null" "questionable ORF" ytylr294c - 99,0,0,0 "null" "questionable ORF" ytyfr017c - 99,0,0,0 "null" "hypothetical protein" ytyor382w - 99,0,0,0 "FIT2" "hypothetical protein" ytyor383c - 98,0,0,0 "FIT3" "weak similarity to L.mexicana secreted acid phosphatase 2" ytyor289w - 99,0,0,0 "null" "similarity to C.elegans hypothetical protein" ytybr230c - 99,0,0,0 "null" "hypothetical protein" ytyor053w - 99,0,0,0 "null" "similarity to protamines" ytyor215c - 99,0,0,0 "null" "similarity to M.xanthus hypothetical protein" ytynl100w - 99,0,0,0 "null" "hypothetical protein" ytypr151c - 99,0,0,0 "null" "weak similarity to YPL159c" ytydr070c - 99,0,0,0 "null" "hypothetical protein" ytypl107w - 99,0,0,0 "null" "similarity to hypothetical protein SPCP31B10.02 S. pombe" ytynl115c - 99,0,0,0 "null" "weak similarity to S.pombe hypothetical protein SPAC23C11" ytypl047w - 99,0,0,0 "null" "weak similarity to A. thaliana genomic DNA" ytyor135c - 99,0,0,0 "null" "questionable ORF" ytypl186c - 99,0,0,0 "null" "weak similarity to Xenopus protein xlgv7" ytyor173w - 99,0,0,0 "null" "strong similarity to YLR270w" ytygl121c - 99,0,0,0 "null" "hypothetical protein" ------------------ Rule 1132: ss(_1,_2,b),beta_len(_2,b1_3),beta_dist(_1,gte29.1),coil_dist(_1,b39.5_45.4) = 0 ss(_1,_2,c),ss(_1,_3,b),beta_len(_3,b6_7),coil_len(_2,b4_6),nss(_2,_4,b) = 1 ss(_1,_2,c),ss(_1,_3,a),alpha_len(_3,b3_6),coil_len(_2,b3_4),coil_dist(_1,b39.5_45.4) = 0 ss(_1,_2,b),beta_len(_2,b4_6),coil_dist(_1,b6.2_39.5),nss(_2,_3,c),nss(_3,_4,b) = 0 cechdeeigagasp_gasch1_Heat_Shock_000_minutes__hs_2 > 0.97 ss(_1,_2,a),alpha_len(_2,b3_6),alpha_dist(_1,b17.9_27.5),nss(_2,_3,c),nss(_3,_4,a) = 0 cechdeeigagasp_gasch1_DBYmsn2/4_real_strain_Plus_0point32_mM_H2O2_20_min <= -1.09 -> class 4/1/0/0 "rRNA transcription" Evaluation on training data (1657 items): ytynl113w 4,1,1,0 "RPC19" "DNA-directed RNA polymerase I,III 16 KD subunit" 4,3,1,0 "RPC19" "DNA-directed RNA polymerase I,III 16 KD subunit" 40,10,0,0 "RPC19" "DNA-directed RNA polymerase I,III 16 KD subunit" ytynl075w 4,1,4,0 "IMP4" "component of the U3 small nucleolar ribonucleoprotein" ytybr154c 4,1,1,0 "RPB5" "DNA-directed RNA polymerase I, II, III 25 KD subunit" 4,3,1,0 "RPB5" "DNA-directed RNA polymerase I, II, III 25 KD subunit" 4,5,1,1 "RPB5" "DNA-directed RNA polymerase I, II, III 25 KD subunit" 40,10,0,0 "RPB5" "DNA-directed RNA polymerase I, II, III 25 KD subunit" ytyor310c 4,1,4,0 "NOP58" "required for pre-18S rRNA processing" 40,10,0,0 "NOP58" "required for pre-18S rRNA processing" ytypr187w 4,1,1,0 "RPO26" "DNA-directed RNA polymerase I, II, III 18 KD subunit" 4,3,1,0 "RPO26" "DNA-directed RNA polymerase I, II, III 18 KD subunit" 4,5,1,1 "RPO26" "DNA-directed RNA polymerase I, II, III 18 KD subunit" 40,10,0,0 "RPO26" "DNA-directed RNA polymerase I, II, III 18 KD subunit" ytykr056w - 4,3,6,0 "RNC1" "tRNA(m5U54)methyltransferase" 40,10,0,0 "RNC1" "tRNA(m5U54)methyltransferase" ytypl211w 4,1,4,0 "NIP7" "required for efficient 60S ribosome subunit biogenesis" 40,10,0,0 "NIP7" "required for efficient 60S ribosome subunit biogenesis" ytygl171w 4,1,4,0 "ROK1" "ATP-dependent RNA helicase" ytygl078c 4,1,4,0 "DBP3" "putative RNA helicase required for pre-rRNA processing" 40,10,0,0 "DBP3" "putative RNA helicase required for pre-rRNA processing" ytyjr063w 4,1,1,0 "RPA12" "DNA-directed RNA polymerase I, 13.7 KD subunit" 40,10,0,0 "RPA12" "DNA-directed RNA polymerase I, 13.7 KD subunit" ytybr142w 4,1,4,0 "MAK5" "ATP-dependent RNA helicase" 4,5,5,1 "MAK5" "ATP-dependent RNA helicase" 40,10,0,0 "MAK5" "ATP-dependent RNA helicase" ytylr175w 14,1,0,0 "CBF5" "putative rRNA pseuduridine synthase" 3,3,1,0 "CBF5" "putative rRNA pseuduridine synthase" 30,4,0,0 "CBF5" "putative rRNA pseuduridine synthase" 4,1,4,0 "CBF5" "putative rRNA pseuduridine synthase" 40,10,0,0 "CBF5" "putative rRNA pseuduridine synthase" Training Accuracy: 11/12 (91.67%) Training Frequency class '4/1/0/0': 48/1657 (2.90%) Evaluation on validation data (856 items): ytyll011w 4,1,4,0 "SOF1" "involved in 18S pre-rRNA production" 40,10,0,0 "SOF1" "involved in 18S pre-rRNA production" ytykl078w - 4,5,5,1 "DHR2" "RNA helicase, involved in ribosomal RNA maturation" ytyor101w - 1,3,13,0 "RAS1" "GTP-binding protein" 1,5,4,0 "RAS1" "GTP-binding protein" 10,1,5,5 "RAS1" "GTP-binding protein" 13,11,3,1 "RAS1" "GTP-binding protein" 14,10,0,0 "RAS1" "GTP-binding protein" 14,20,0,0 "RAS1" "GTP-binding protein" 3,99,0,0 "RAS1" "GTP-binding protein" 40,3,0,0 "RAS1" "GTP-binding protein" ytymr131c 30,99,0,0 "RRB1" "involved in the regulation of ribosome biosynthesis" 4,1,99,0 "RRB1" "involved in the regulation of ribosome biosynthesis" ytyhr170w - 4,99,0,0 "NMD3" "nonsense-mediated mRNA decay protein" ytynl175c - 4,99,0,0 "NOP13" "similarity to S.pombe Rnp24p, NSR1P and human splicing factor" ytynl248c 4,1,1,0 "RPA49" "DNA-directed RNA polymerase A (I) chain, 46 kDa" 40,10,0,0 "RPA49" "DNA-directed RNA polymerase A (I) chain, 46 kDa" ytynl096c - 40,3,0,0 "RPS7B" "strong similarity to ribosomal protein S7" 5,1,0,0 "RPS7B" "strong similarity to ribosomal protein S7" Validation Accuracy: 3/8 (37.50%) Validation Frequency class '4/1/0/0': 20/856 (2.34%) Evaluation on propertest data (1309 items): ytyar071w - 1,4,1,0 "PHO11" "secreted acid phosphatase" 40,27,0,0 "PHO11" "secreted acid phosphatase" ytydr120c - 4,3,6,0 "TRM1" "N2,N2-dimethylguanine tRNA methyltransferase" 40,16,0,0 "TRM1" "N2,N2-dimethylguanine tRNA methyltransferase" 40,3,0,0 "TRM1" "N2,N2-dimethylguanine tRNA methyltransferase" ytybr034c - 40,10,0,0 "HMT1" "hnRNP arginine N-methyltransferase" 6,7,0,0 "HMT1" "hnRNP arginine N-methyltransferase" ytyer006w - 8,16,0,0 "null" "similarity to P.polycephalum myosin-related protein mlpA" ytybl039c - 1,3,4,0 "URA7" "CTP synthase 1" 30,1,0,0 "URA7" "CTP synthase 1" 40,3,0,0 "URA7" "CTP synthase 1" ytyml123c - 1,4,7,0 "PHO84" "high-affinity inorganic phosphate/H+ symporter" 13,1,1,3 "PHO84" "high-affinity inorganic phosphate/H+ symporter" 13,1,3,3 "PHO84" "high-affinity inorganic phosphate/H+ symporter" 40,2,0,0 "PHO84" "high-affinity inorganic phosphate/H+ symporter" 67,4,7,0 "PHO84" "high-affinity inorganic phosphate/H+ symporter" 67,7,0,0 "PHO84" "high-affinity inorganic phosphate/H+ symporter" 8,19,0,0 "PHO84" "high-affinity inorganic phosphate/H+ symporter" ytyjr002w 4,1,4,0 "MPP10" "component of the U3 small nucleolar ribonucleoprotein" 40,10,0,0 "MPP10" "component of the U3 small nucleolar ribonucleoprotein" ytyhr089c 4,1,4,0 "GAR1" "nucleolar rRNA processing protein" 40,10,0,0 "GAR1" "nucleolar rRNA processing protein" ytyor272w - 3,3,1,0 "YTM1" "microtubule-interacting protein" 40,4,0,0 "YTM1" "microtubule-interacting protein" ytyhr215w - 1,4,1,0 "PHO12" "secreted acid phosphatase" 40,27,0,0 "PHO12" "secreted acid phosphatase" ytykr024c 4,1,4,0 "DBP7" "RNA helicase required for 60S ribosomal subunit assembly" ytyjl148w 4,1,1,0 "RPA34" "nonessential component of RNA-polI" 40,10,0,0 "RPA34" "nonessential component of RNA-polI" ytygl120c - 4,5,5,1 "PRP43" "involved in spliceosome disassembly" 40,10,0,0 "PRP43" "involved in spliceosome disassembly" Propertest Accuracy: 4/13 (30.77%) Propertest Frequency class '4/1/0/0': 41/1309 (3.13%) New (unknown) data (856 items): ytylr196w - 99,0,0,0 "PWP1" "similarity to human IEF SSP 9502 protein" ytyor243c - 99,0,0,0 "null" "similarity to M.jannaschii hypothetical protein MJ0588" ytynr053c - 99,0,0,0 "NOG2" "strong similarity to human breast tumor associated autoantigen" ytylr221c - 99,0,0,0 "RSA3" "hypothetical protein" ytydl201w - 99,0,0,0 "null" "strong similarity to probable methyltransferase related protein Neurospora crassa" ytyor056c - 99,0,0,0 "null" "weak similarity to human phosphorylation regulatory protein HP-10" ytyor315w - 99,0,0,0 "null" "hypothetical protein" ytyml080w - 99,0,0,0 "DUS1" "similarity to A.brasilense nifR3 protein" ytylr276c - 98,0,0,0 "DBP9" "similarity to YDL031w, MAK5P and RNA helicases" ytynl110c - 99,0,0,0 "null" "weak similarity to fruit fly RNA-binding protein" ytyil104c - 99,0,0,0 "null" "similarity to hypothetical S. pombe protein" ytycr016w - 99,0,0,0 "null" "hypothetical protein" ytyer049w - 99,0,0,0 "null" "strong similarity to hypothetical S.pombe protein YER049W" ytyer082c - 99,0,0,0 "KRE31" "similarity to M.sexta steroid regulated MNG10 protein" ytyor004w - 99,0,0,0 "null" "weak similarity to hypothetical protein YDR339c" ytymr014w - 99,0,0,0 "BUD22" "weak similarity to S.pombe hypothetical protein SPAC4F10" ytyil110w - 99,0,0,0 "null" "weak similarity to hypothetical C.elegans protein" ytyil019w - 99,0,0,0 "null" "weak similarity to S.pombe hypothetical protein SPAC3F10" ytykr060w - 99,0,0,0 "null" "similarity to hypothetical protein S. pombe" ------------------ Rule 1145: ss(_1,_2,b),coil_dist(_1,b39.5_45.4),nss(_2,_3,a) = 0 ss(_1,_2,c),coil_len(_2,b3_4),nss(_2,_3,b),nss(_3,_4,a) = 0 cechdeeigagasp_gasch1_Heat_Shock_000_minutes__hs_2 > 0.97 ss(_1,_2,b),beta_len(_2,b3_4),alpha_dist(_1,b36.2_47.6),beta_dist(_1,b12.4_19.1) = 0 ss(_1,_2,a),alpha_len(_2,b3_6),beta_dist(_1,b19.1_29.1),nss(_2,_3,c),nss(_3,_4,a) = 0 ss(_1,_2,b),beta_len(_2,b6_7),alpha_dist(_1,b27.5_36.2),coil_dist(_1,b39.5_45.4) = 0 ss(_1,_2,c),coil_len(_2,b3_4),beta_dist(_1,b0.0_6.1),coil_dist(_1,gte57.6),nss(_2,_3,a) = 0 cechdeeigagasp_gasch1_heat_shock_25_to_37_20_minutes <= -1.51 ss(_1,_2,b),ss(_1,_3,a),beta_len(_2,b1_3),nss(_2,_4,a),nss(_3,_5,b) = 0 ss(_1,_2,b),ss(_1,_3,a),alpha_len(_3,b1_3),coil_dist(_1,b6.2_39.5),nss(_2,_3,a) = 0 ss(_1,_2,b),ss(_1,_3,a),alpha_len(_3,b1_3),beta_len(_2,b4_6),nss(_3,_2,b) = 0 ss(_1,_2,a),alpha_len(_2,gte14),coil_dist(_1,b39.5_45.4),nss(_2,_3,c),nss(_3,_4,a) = 0 ss(_1,_2,a),ss(_1,_3,a),alpha_len(_2,b1_3),alpha_dist(_1,b17.9_27.5),beta_dist(_1,b12.4_19.1) = 0 cechdeeigagasp_gasch1_DBYmsn2/4_real_strain_Plus_0point32_mM_H2O2_20_min > -1.09 -> class 5/1/0/0 "ribosome biogenesis" Evaluation on training data (1657 items): ytyer131w 40,3,0,0 "RPS26B" "40S small subunit ribosomal protein S26e-c5" 5,1,0,0 "RPS26B" "40S small subunit ribosomal protein S26e-c5" ytyer117w 40,3,0,0 "RPL23B" "ribosomal protein L23.e" 5,1,0,0 "RPL23B" "ribosomal protein L23.e" ytyil052c 40,3,0,0 "RPL34B" "ribosomal protein L34.e" 5,1,0,0 "RPL34B" "ribosomal protein L34.e" ytybr181c 40,3,0,0 "RPS6B" "ribosomal protein S6.e" 5,1,0,0 "RPS6B" "ribosomal protein S6.e" ytyil133c 40,3,0,0 "RPL16A" "60S large subunit ribosomal protein" 5,1,0,0 "RPL16A" "60S large subunit ribosomal protein" ytyhr021c 40,3,0,0 "RPS27B" "ribosomal protein S27.e" 5,1,0,0 "RPS27B" "ribosomal protein S27.e" ytybl087c 40,3,0,0 "RPL23A" "60S large subunit ribosomal protein L23.e" 5,1,0,0 "RPL23A" "60S large subunit ribosomal protein L23.e" ytyor182c 40,3,0,0 "RPS30B" "ribosomal protein S30" 5,1,0,0 "RPS30B" "ribosomal protein S30" ytygr148c 40,3,0,0 "RPL24B" "60S large subunit ribosomal protein L24.e.B" 5,1,0,0 "RPL24B" "60S large subunit ribosomal protein L24.e.B" ytydr450w 40,3,0,0 "RPS18A" "ribosomal protein S18.e.c4" 5,1,0,0 "RPS18A" "ribosomal protein S18.e.c4" ytylr029c 40,3,0,0 "RPL15A" "60s large subunit ribosomal protein L15.e.c12" 5,1,0,0 "RPL15A" "60s large subunit ribosomal protein L15.e.c12" ytygl147c 40,3,0,0 "RPL9A" "ribosomal protein L9.e" 5,1,0,0 "RPL9A" "ribosomal protein L9.e" ytybr189w 40,3,0,0 "RPS9B" "ribosomal protein S9.e.B" 5,1,0,0 "RPS9B" "ribosomal protein S9.e.B" ytybr031w 40,3,0,0 "RPL4A" "ribosomal protein" 5,1,0,0 "RPL4A" "ribosomal protein" ytykl180w 40,3,0,0 "RPL17A" "ribosomal protein L17.e" 5,1,0,0 "RPL17A" "ribosomal protein L17.e" ytylr061w 5,1,0,0 "RPL22A" "ribosomal protein" ytylr048w 40,3,0,0 "RPS0B" "40S ribosomal protein p40 homolog B" 5,1,0,0 "RPS0B" "40S ribosomal protein p40 homolog B" 6,10,0,0 "RPS0B" "40S ribosomal protein p40 homolog B" ytybr084c-a 40,3,0,0 "RPL19A" "60S large subunit ribosomal protein L19.e" 5,1,0,0 "RPL19A" "60S large subunit ribosomal protein L19.e" ytyhr141c 40,3,0,0 "RPL42B" "ribosomal protein L36a.e" 5,1,0,0 "RPL42B" "ribosomal protein L36a.e" ytyer056c-a 40,3,0,0 "RPL34A" "ribosomal protein L34" 5,1,0,0 "RPL34A" "ribosomal protein L34" ytyor369c 40,3,0,0 "RPS12" "40S small subunit acidic ribosomal protein S12" 5,1,0,0 "RPS12" "40S small subunit acidic ribosomal protein S12" ytydr064w 40,3,0,0 "RPS13" "ribosomal protein" 5,1,0,0 "RPS13" "ribosomal protein" ytylr340w 40,3,0,0 "RPP0" "acidic ribosomal protein L10.e" 5,1,0,0 "RPP0" "acidic ribosomal protein L10.e" ytylr167w 40,3,0,0 "RPS31" "ubiquitin/40S small subunit ribosomal protein" 5,1,0,0 "RPS31" "ubiquitin/40S small subunit ribosomal protein" 6,13,1,0 "RPS31" "ubiquitin/40S small subunit ribosomal protein" ytygl030w 40,3,0,0 "RPL30" "60S large subunit ribosomal protein L30.e" 5,1,0,0 "RPL30" "60S large subunit ribosomal protein L30.e" ytydr500c 40,3,0,0 "RPL37B" "ribosomal protein L.37.e" 5,1,0,0 "RPL37B" "ribosomal protein L.37.e" ytyor312c 40,3,0,0 "RPL20B" "60S large subunit ribosomal protein" 5,1,0,0 "RPL20B" "60S large subunit ribosomal protein" ytynl178w 40,3,0,0 "RPS3" "ribosomal protein S3.e" 5,1,0,0 "RPS3" "ribosomal protein S3.e" ytyhr010w 40,3,0,0 "RPL27A" "60S large subunit ribosomal protein L27.e" 5,1,0,0 "RPL27A" "60S large subunit ribosomal protein L27.e" ytyor234c 5,1,0,0 "RPL33B" "ribosomal protein L35a.e.c15" ytygr214w 14,4,3,1 "RPS0A" "40S ribosomal protein p40 homolog A" 40,3,0,0 "RPS0A" "40S ribosomal protein p40 homolog A" 5,1,0,0 "RPS0A" "40S ribosomal protein p40 homolog A" 6,10,0,0 "RPS0A" "40S ribosomal protein p40 homolog A" ytykr057w 40,3,0,0 "RPS21A" "ribosomal protein S21.e" 5,1,0,0 "RPS21A" "ribosomal protein S21.e" ytyjl177w 40,3,0,0 "RPL17B" "60s large subunit ribosomal protein L17.e" 5,1,0,0 "RPL17B" "60s large subunit ribosomal protein L17.e" ytybl092w 40,3,0,0 "RPL32" "60S large subunit ribosomal protein L32.e" 5,1,0,0 "RPL32" "60S large subunit ribosomal protein L32.e" ytybr191w 40,3,0,0 "RPL21A" "ribosomal protein L21.e" 5,1,0,0 "RPL21A" "ribosomal protein L21.e" ytylr448w 40,3,0,0 "RPL6B" "60S large subunit ribosomal protein" 5,1,0,0 "RPL6B" "60S large subunit ribosomal protein" ytypr132w 40,3,0,0 "RPS23B" "40S small subunit ribosomal protein S23.e" 5,1,0,0 "RPS23B" "40S small subunit ribosomal protein S23.e" ytycr072c - 40,10,0,0 "null" "strong similarity to S. pombe trp-asp repeat containing protein" ytyhl015w 40,3,0,0 "RPS20" "ribosomal protein" 5,1,0,0 "RPS20" "ribosomal protein" ytypl131w 40,3,0,0 "RPL5" "60S large subunit ribosomal protein L5.e" 5,1,0,0 "RPL5" "60S large subunit ribosomal protein L5.e" ytyil148w 40,3,0,0 "RPL40A" "ubiquitin" 5,1,0,0 "RPL40A" "ubiquitin" 6,13,1,0 "RPL40A" "ubiquitin" ytyjr123w 40,3,0,0 "RPS5" "ribosomal protein S5.e" 5,1,0,0 "RPS5" "ribosomal protein S5.e" ytydr447c 40,3,0,0 "RPS17B" "ribosomal protein S17.e.B" 5,1,0,0 "RPS17B" "ribosomal protein S17.e.B" ytygl076c 40,3,0,0 "RPL7A" "60S large subunit ribosomal protein L7.e.A" 5,1,0,0 "RPL7A" "60S large subunit ribosomal protein L7.e.A" ytynl301c 40,3,0,0 "RPL18B" "60S large subunit ribosomal protein L18.e" 5,1,0,0 "RPL18B" "60S large subunit ribosomal protein L18.e" ytyir012w - 40,3,0,0 "SQT1" "suppresses dominant-negative mutants of the ribosomal protein QSR1" 6,10,0,0 "SQT1" "suppresses dominant-negative mutants of the ribosomal protein QSR1" ytyor293w 40,3,0,0 "RPS10A" "ribosomal protein S10.e" 5,1,0,0 "RPS10A" "ribosomal protein S10.e" ytynl067w 40,3,0,0 "RPL9B" "ribosomal protein L9.e.c14" 5,1,0,0 "RPL9B" "ribosomal protein L9.e.c14" ytyol120c 40,3,0,0 "RPL18A" "60S large subunit ribosomal protein S18.e" 5,1,0,0 "RPL18A" "60S large subunit ribosomal protein S18.e" ytymr116c 2,16,0,0 "ASC1" "40S small subunit ribosomal protein" 40,3,0,0 "ASC1" "40S small subunit ribosomal protein" 5,1,0,0 "ASC1" "40S small subunit ribosomal protein" 5,4,0,0 "ASC1" "40S small subunit ribosomal protein" ytyil018w 40,3,0,0 "RPL2B" "60S large subunit ribosomal protein L8.e" 5,1,0,0 "RPL2B" "60S large subunit ribosomal protein L8.e" ytyfr031c-a 5,1,0,0 "RPL2A" "ribosomal protein L8.e" Training Accuracy: 50/52 (96.15%) Training Frequency class '5/1/0/0': 91/1657 (5.49%) Evaluation on validation data (856 items): ytyjl190c 40,3,0,0 "RPS22A" "ribosomal protein S15a.e.c10" 5,1,0,0 "RPS22A" "ribosomal protein S15a.e.c10" ytyhl001w 40,3,0,0 "RPL14B" "ribosomal protein" 5,1,0,0 "RPL14B" "ribosomal protein" ytyjr007w - 40,3,0,0 "SUI2" "translation initiation factor eIF2, alpha chain" 5,4,0,0 "SUI2" "translation initiation factor eIF2, alpha chain" ytydr012w 40,3,0,0 "RPL4B" "ribosomal protein L4.e.B" 5,1,0,0 "RPL4B" "ribosomal protein L4.e.B" ytyel054c 40,3,0,0 "RPL12A" "60S large subunit ribosomal protein L12.e" 5,1,0,0 "RPL12A" "60S large subunit ribosomal protein L12.e" ytyjl189w 40,3,0,0 "RPL39" "60S large subunit ribosomal protein L39.e" 5,1,0,0 "RPL39" "60S large subunit ribosomal protein L39.e" ytyhr062c - 4,1,4,0 "RPP1" "required for processing of tRNA and 35S rRNA" 4,3,3,0 "RPP1" "required for processing of tRNA and 35S rRNA" 40,10,0,0 "RPP1" "required for processing of tRNA and 35S rRNA" ytylr075w 3,3,1,0 "RPL10" "60S large subunit ribosomal protein" 40,3,0,0 "RPL10" "60S large subunit ribosomal protein" 5,1,0,0 "RPL10" "60S large subunit ribosomal protein" 6,10,0,0 "RPL10" "60S large subunit ribosomal protein" ytynl162w 40,3,0,0 "RPL42A" "ribosomal protein L36a.e" 5,1,0,0 "RPL42A" "ribosomal protein L36a.e" ytylr325c 40,3,0,0 "RPL38" "60S large subunit ribosomal protein" 5,1,0,0 "RPL38" "60S large subunit ribosomal protein" ytydl136w 40,3,0,0 "RPL35B" "60S large subunit ribosomal protein" 5,1,0,0 "RPL35B" "60S large subunit ribosomal protein" ytygl103w 40,3,0,0 "RPL28" "60S large subunit ribosomal protein L27a.e" 5,1,0,0 "RPL28" "60S large subunit ribosomal protein L27a.e" ytypr102c 40,3,0,0 "RPL11A" "ribosomal protein L11.e" 5,1,0,0 "RPL11A" "ribosomal protein L11.e" ytycr034w - 1,5,1,0 "FEN1" "fatty acid elongase required for sphingolipid formation" 1,6,1,0 "FEN1" "fatty acid elongase required for sphingolipid formation" 14,1,0,0 "FEN1" "fatty acid elongase required for sphingolipid formation" 14,4,3,1 "FEN1" "fatty acid elongase required for sphingolipid formation" 14,4,3,3 "FEN1" "fatty acid elongase required for sphingolipid formation" 14,4,3,5 "FEN1" "fatty acid elongase required for sphingolipid formation" 40,2,0,0 "FEN1" "fatty acid elongase required for sphingolipid formation" Validation Accuracy: 11/14 (78.57%) Validation Frequency class '5/1/0/0': 42/856 (4.91%) Evaluation on propertest data (1309 items): ytygl123w 40,3,0,0 "RPS2" "40S small subunit ribosomal protein" 5,1,0,0 "RPS2" "40S small subunit ribosomal protein" ytypl198w 40,3,0,0 "RPL7B" "60S large subunit ribosomal protein" 5,1,0,0 "RPL7B" "60S large subunit ribosomal protein" ytyml073c 40,3,0,0 "RPL6A" "60S large subunit ribosomal protein" 5,1,0,0 "RPL6A" "60S large subunit ribosomal protein" ytypr043w 40,3,0,0 "RPL43A" "ribosomal protein L37a.e" 5,1,0,0 "RPL43A" "ribosomal protein L37a.e" ytynl112w - 4,1,4,0 "DBP2" "ATP-dependent RNA helicase of DEAD box family" 40,10,0,0 "DBP2" "ATP-dependent RNA helicase of DEAD box family" ytyor167c 40,3,0,0 "RPS28A" "40S small subunit ribosomal protein S28.e.c15" 5,1,0,0 "RPS28A" "40S small subunit ribosomal protein S28.e.c15" ytygr085c 40,3,0,0 "RPL11B" "ribosomal protein" 5,1,0,0 "RPL11B" "ribosomal protein" ytynl151c - 4,1,1,0 "RPC31" "DNA-directed RNA polymerase III, 31 KD subunit" 4,3,1,0 "RPC31" "DNA-directed RNA polymerase III, 31 KD subunit" 40,10,0,0 "RPC31" "DNA-directed RNA polymerase III, 31 KD subunit" ytypr163c - 40,3,0,0 "TIF3" "translation initiation factor eIF4B" 5,4,0,0 "TIF3" "translation initiation factor eIF4B" ytyjl136c 40,3,0,0 "RPS21B" "40S small subunit ribosomal protein S21.e" 5,1,0,0 "RPS21B" "40S small subunit ribosomal protein S21.e" ytygl031c 40,3,0,0 "RPL24A" "60S large subunit ribosomal protein L24.e.A" 5,1,0,0 "RPL24A" "60S large subunit ribosomal protein L24.e.A" ytygr034w 40,3,0,0 "RPL26B" "60S large subunit ribosomal protein" 5,1,0,0 "RPL26B" "60S large subunit ribosomal protein" ytynl255c 4,99,0,0 "GIS2" "strong similarity to nucleic acid-binding proteins, similarity to Tetrahymena thermophila cnjB protein" 5,1,0,0 "GIS2" "strong similarity to nucleic acid-binding proteins, similarity to Tetrahymena thermophila cnjB protein" ytylr185w 40,3,0,0 "RPL37A" "ribosomal protein L37.e" 5,1,0,0 "RPL37A" "ribosomal protein L37.e" ytygr118w 40,3,0,0 "RPS23A" "40S small subunit ribosomal protein S23.e" 5,1,0,0 "RPS23A" "40S small subunit ribosomal protein S23.e" ytymr146c - 40,3,0,0 "TIF34" "translation initiation factor eIF3, p39 subunit" 5,4,0,0 "TIF34" "translation initiation factor eIF3, p39 subunit" ytymr242c 40,3,0,0 "RPL20A" "60s large subunit ribosomal protein" 5,1,0,0 "RPL20A" "60s large subunit ribosomal protein" ytydl182w - 1,1,1,0 "LYS20" "homocitrate synthase" 1,5,1,0 "LYS20" "homocitrate synthase" 40,10,0,0 "LYS20" "homocitrate synthase" ytydr429c - 40,3,0,0 "TIF35" "translation initiation factor eIF3 (p33 subunit)" 5,4,0,0 "TIF35" "translation initiation factor eIF3 (p33 subunit)" ytypr137w - 4,5,99,0 "RRP9" "protein associated with the U3 small nucleolar RNA, required for pre-ribosomal RNA processing" ytydr382w 40,3,0,0 "RPP2B" "60S large subunit acidic ribosomal protein" 5,1,0,0 "RPP2B" "60S large subunit acidic ribosomal protein" ytybl027w 40,3,0,0 "RPL19B" "60S large subunit ribosomal protein L19.e" 5,1,0,0 "RPL19B" "60S large subunit ribosomal protein L19.e" ytynl069c 40,3,0,0 "RPL16B" "60S large subunit ribosomal protein" 5,1,0,0 "RPL16B" "60S large subunit ribosomal protein" ytybr048w 40,3,0,0 "RPS11B" "ribosomal protein S11.e.B" 5,1,0,0 "RPS11B" "ribosomal protein S11.e.B" ytygr027c 40,3,0,0 "RPS25A" "ribosomal protein S25.e.c7" 5,1,0,0 "RPS25A" "ribosomal protein S25.e.c7" ytyol127w 40,3,0,0 "RPL25" "ribosomal protein L23a.e" 5,1,0,0 "RPL25" "ribosomal protein L23a.e" Propertest Accuracy: 19/26 (73.08%) Propertest Frequency class '5/1/0/0': 81/1309 (6.19%) New (unknown) data (856 items): ytydr417c - 99,0,0,0 "null" "questionable ORF" ytyjl188c - 99,0,0,0 "BUD19" "questionable ORF" ytybr267w - 99,0,0,0 "null" "similarity to hypothetical protein YLR387c" ytyer156c - 99,0,0,0 "null" "similarity to hypothetical C. elegans protein C27H6.5" ytydr324c - 99,0,0,0 "null" "weak similarity to beta transducin from S. pombe and other WD-40 repeat containing proteins" ytyol077c - 99,0,0,0 "BRX1" "strong similarity to C.elegans K12H4.3 protein" ytygl102c - 99,0,0,0 "null" "questionable ORF" ytyjl069c - 99,0,0,0 "null" "similarity to C.elegans hypothetical protein" ytygr123c - 98,0,0,0 "PPT1" "protein ser/thr phosphatase" ytynl010w - 99,0,0,0 "null" "weak similarity to B.subtilis hypothetical protein ykrX" ytycr047c - 98,0,0,0 "BUD23" "weak similarity to N-methyltransferases" ytypl142c - 99,0,0,0 "null" "questionable ORF" ytycr087w - 99,0,0,0 "null" "questionable ORF" ytynr046w - 99,0,0,0 "null" "strong similarity to S.pombe hypothetical protein SPAC31A2.02" ytylr413w - 99,0,0,0 "null" "strong similarity to YKL187c" ytyor145c - 99,0,0,0 "null" "strong similarity to hypothtical S. pombe protein and to hypothetical C. elegans protein" ------------------ Rule 925: beta_dist(_1,gte29.1),coil_dist(_1,b6.2_39.5) = 0 ss(_1,_2,c),coil_len(_2,gte10),beta_dist(_1,b0.0_6.1),coil_dist(_1,b6.2_39.5) = 0 ss(_1,_2,c),coil_len(_2,gte10),beta_dist(_1,b19.1_29.1),nss(_2,_3,b),nss(_3,_4,a) = 0 ss(_1,_2,b),beta_len(_2,b3_4),beta_dist(_1,gte29.1),nss(_2,_3,c),nss(_3,_4,a) = 0 ss(_1,_2,b),beta_len(_2,b1_3),beta_dist(_1,b12.4_19.1),nss(_2,_3,c),nss(_3,_4,a) = 0 ss(_1,_2,b),ss(_1,_3,a),beta_len(_2,gte7),coil_dist(_1,b50.5_57.6),nss(_2,_4,a) = 0 ss(_1,_2,b),beta_len(_2,gte7),beta_dist(_1,b6.1_12.4),coil_dist(_1,b6.2_39.5) = 0 ss(_1,_2,c),coil_len(_2,gte10),coil_dist(_1,b39.5_45.4),nss(_2,_3,b),nss(_3,_4,a) = 0 ss(_1,_2,b),ss(_1,_3,a),alpha_len(_3,b1_3),beta_len(_2,b3_4),nss(_3,_2,b) = 0 cechdeeigagasp_derisi_g1 > 14100 cechdeeigagasp_gasch1_Nitrogen_Depletion_4_h <= 0.92 ss(_1,_2,b),ss(_1,_3,a),beta_len(_2,b4_6),beta_dist(_1,b0.0_6.1),nss(_2,_4,c) = 0 -> class 40/3/0/0 "cytoplasm" Evaluation on training data (1657 items): ytyer131w 40,3,0,0 "RPS26B" "40S small subunit ribosomal protein S26e-c5" 5,1,0,0 "RPS26B" "40S small subunit ribosomal protein S26e-c5" ytyel034w 1,3,16,0 "HYP2" "translation initiation factor eIF5A.1" 40,3,0,0 "HYP2" "translation initiation factor eIF5A.1" 5,4,0,0 "HYP2" "translation initiation factor eIF5A.1" ytyer117w 40,3,0,0 "RPL23B" "ribosomal protein L23.e" 5,1,0,0 "RPL23B" "ribosomal protein L23.e" ytymr312w - 4,5,1,1 "ELP6" "subunit of RNA polymerase II elongator complex" ytygr061c 1,3,1,0 "ADE6" "5'-phosphoribosylformyl glycinamidine synthetase" 40,3,0,0 "ADE6" "5'-phosphoribosylformyl glycinamidine synthetase" ytydl191w 40,3,0,0 "RPL35A" "60S large subunit ribosomal protein" 5,1,0,0 "RPL35A" "60S large subunit ribosomal protein" ytynr036c - 5,1,0,0 "null" "strong similarity to ribosomal protein S12" ytykl081w 40,3,0,0 "TEF4" "translation elongation factor eEF1, gamma chain" 5,4,0,0 "TEF4" "translation elongation factor eEF1, gamma chain" ytygr148c 40,3,0,0 "RPL24B" "60S large subunit ribosomal protein L24.e.B" 5,1,0,0 "RPL24B" "60S large subunit ribosomal protein L24.e.B" ytylr029c 40,3,0,0 "RPL15A" "60s large subunit ribosomal protein L15.e.c12" 5,1,0,0 "RPL15A" "60s large subunit ribosomal protein L15.e.c12" ytybr189w 40,3,0,0 "RPS9B" "ribosomal protein S9.e.B" 5,1,0,0 "RPS9B" "ribosomal protein S9.e.B" ytydr025w 40,3,0,0 "RPS11A" "ribosomal protein S11.e" 5,1,0,0 "RPS11A" "ribosomal protein S11.e" ytybr031w 40,3,0,0 "RPL4A" "ribosomal protein" 5,1,0,0 "RPL4A" "ribosomal protein" ytyil078w 1,3,16,0 "THS1" "threonyl tRNA synthetase, cytosolic" 40,3,0,0 "THS1" "threonyl tRNA synthetase, cytosolic" 5,10,0,0 "THS1" "threonyl tRNA synthetase, cytosolic" ytypr080w 40,3,0,0 "TEF1" "translation elongation factor eEF1 alpha-A chain, cytosolic" 5,4,0,0 "TEF1" "translation elongation factor eEF1 alpha-A chain, cytosolic" ytynl135c 40,3,0,0 "FPR1" "peptidyl-prolyl cis-trans isomerase, FK506-binding protein" 6,1,0,0 "FPR1" "peptidyl-prolyl cis-trans isomerase, FK506-binding protein" ytypl240c 11,1,0,0 "HSP82" "heat shock protein" 14,4,3,3 "HSP82" "heat shock protein" 14,4,3,5 "HSP82" "heat shock protein" 2,19,0,0 "HSP82" "heat shock protein" 3,3,2,0 "HSP82" "heat shock protein" 40,3,0,0 "HSP82" "heat shock protein" ytyor369c 40,3,0,0 "RPS12" "40S small subunit acidic ribosomal protein S12" 5,1,0,0 "RPS12" "40S small subunit acidic ribosomal protein S12" ytydr224c - 4,5,1,4 "HTB1" "histone H2B" 40,10,3,0 "HTB1" "histone H2B" ytydl061c 40,3,0,0 "RPS29B" "ribosomal protein S29.e.B" 5,1,0,0 "RPS29B" "ribosomal protein S29.e.B" ytycr012w 1,5,1,0 "PGK1" "phosphoglycerate kinase" 2,1,0,0 "PGK1" "phosphoglycerate kinase" 40,3,0,0 "PGK1" "phosphoglycerate kinase" ytydr064w 40,3,0,0 "RPS13" "ribosomal protein" 5,1,0,0 "RPS13" "ribosomal protein" ytylr340w 40,3,0,0 "RPP0" "acidic ribosomal protein L10.e" 5,1,0,0 "RPP0" "acidic ribosomal protein L10.e" ytygl189c 40,3,0,0 "RPS26A" "40S small subunit ribosomal protein S26e.c7" 5,1,0,0 "RPS26A" "40S small subunit ribosomal protein S26e.c7" ytyal003w 40,3,0,0 "EFB1" "translation elongation factor eEF1beta" 5,4,2,0 "EFB1" "translation elongation factor eEF1beta" ytylr167w 40,3,0,0 "RPS31" "ubiquitin/40S small subunit ribosomal protein" 5,1,0,0 "RPS31" "ubiquitin/40S small subunit ribosomal protein" 6,13,1,0 "RPS31" "ubiquitin/40S small subunit ribosomal protein" ytyal005c 11,1,0,0 "SSA1" "heat shock protein of HSP70 family, cytosolic" 40,3,0,0 "SSA1" "heat shock protein of HSP70 family, cytosolic" 6,1,0,0 "SSA1" "heat shock protein of HSP70 family, cytosolic" 6,4,0,0 "SSA1" "heat shock protein of HSP70 family, cytosolic" 8,1,0,0 "SSA1" "heat shock protein of HSP70 family, cytosolic" ytyml028w 11,7,0,0 "TSA1" "thiol-specific antioxidant" 40,3,0,0 "TSA1" "thiol-specific antioxidant" ytymr303c 1,5,1,0 "ADH2" "alcohol dehydrogenase II" 2,16,0,0 "ADH2" "alcohol dehydrogenase II" 40,3,0,0 "ADH2" "alcohol dehydrogenase II" ytydl082w 40,3,0,0 "RPL13A" "60S large subunit ribosomal protein L13" 5,1,0,0 "RPL13A" "60S large subunit ribosomal protein L13" ytydl229w 40,3,0,0 "SSB1" "heat shock protein of HSP70 family" 5,99,0,0 "SSB1" "heat shock protein of HSP70 family" ytynl178w 40,3,0,0 "RPS3" "ribosomal protein S3.e" 5,1,0,0 "RPS3" "ribosomal protein S3.e" ytyjl177w 40,3,0,0 "RPL17B" "60s large subunit ribosomal protein L17.e" 5,1,0,0 "RPL17B" "60s large subunit ribosomal protein L17.e" ytykl056c 40,3,0,0 "null" "strong similarity to human IgE-dependent histamine-releasing factor" 5,1,0,0 "null" "strong similarity to human IgE-dependent histamine-releasing factor" ytykl152c 1,5,1,0 "GPM1" "phosphoglycerate mutase" 2,1,0,0 "GPM1" "phosphoglycerate mutase" 40,3,0,0 "GPM1" "phosphoglycerate mutase" ytybr191w 40,3,0,0 "RPL21A" "ribosomal protein L21.e" 5,1,0,0 "RPL21A" "ribosomal protein L21.e" ytylr448w 40,3,0,0 "RPL6B" "60S large subunit ribosomal protein" 5,1,0,0 "RPL6B" "60S large subunit ribosomal protein" ytypr132w 40,3,0,0 "RPS23B" "40S small subunit ribosomal protein S23.e" 5,1,0,0 "RPS23B" "40S small subunit ribosomal protein S23.e" ytypl131w 40,3,0,0 "RPL5" "60S large subunit ribosomal protein L5.e" 5,1,0,0 "RPL5" "60S large subunit ribosomal protein L5.e" ytyjr123w 40,3,0,0 "RPS5" "ribosomal protein S5.e" 5,1,0,0 "RPS5" "ribosomal protein S5.e" ytylr134w 1,5,1,0 "PDC5" "pyruvate decarboxylase, isozyme 2" 2,16,0,0 "PDC5" "pyruvate decarboxylase, isozyme 2" 40,3,0,0 "PDC5" "pyruvate decarboxylase, isozyme 2" ytynl301c 40,3,0,0 "RPL18B" "60S large subunit ribosomal protein L18.e" 5,1,0,0 "RPL18B" "60S large subunit ribosomal protein L18.e" ytymr186w 11,1,0,0 "HSC82" "heat shock protein" 40,3,0,0 "HSC82" "heat shock protein" ytyll039c 11,1,0,0 "UBI4" "ubiquitin" 14,4,3,5 "UBI4" "ubiquitin" 40,10,0,0 "UBI4" "ubiquitin" 40,3,0,0 "UBI4" "ubiquitin" 5,99,0,0 "UBI4" "ubiquitin" 6,10,0,0 "UBI4" "ubiquitin" 6,13,1,0 "UBI4" "ubiquitin" ytydr385w 40,3,0,0 "EFT2" "translation elongation factor eEF2" 5,4,0,0 "EFT2" "translation elongation factor eEF2" ytyhr055c 11,7,0,0 "CUP1-2" "metallothionein" 40,3,0,0 "CUP1-2" "metallothionein" ytykl006w 40,3,0,0 "RPL14A" "ribosomal protein" 5,1,0,0 "RPL14A" "ribosomal protein" ytyol120c 40,3,0,0 "RPL18A" "60S large subunit ribosomal protein S18.e" 5,1,0,0 "RPL18A" "60S large subunit ribosomal protein S18.e" ytyhr158c 13,11,3,7 "KEL1" "involved in cell fusion and morphology" 14,4,3,1 "KEL1" "involved in cell fusion and morphology" 14,4,3,3 "KEL1" "involved in cell fusion and morphology" 40,3,0,0 "KEL1" "involved in cell fusion and morphology" ytyil018w 40,3,0,0 "RPL2B" "60S large subunit ribosomal protein L8.e" 5,1,0,0 "RPL2B" "60S large subunit ribosomal protein L8.e" ytyhr174w 1,5,1,0 "ENO2" "enolase II (2-phosphoglycerate dehydratase)" 2,1,0,0 "ENO2" "enolase II (2-phosphoglycerate dehydratase)" 40,3,0,0 "ENO2" "enolase II (2-phosphoglycerate dehydratase)" ytydl075w 40,3,0,0 "RPL31A" "60S large subunit ribosomal protein L31.e" 5,1,0,0 "RPL31A" "60S large subunit ribosomal protein L31.e" Training Accuracy: 49/52 (94.23%) Training Frequency class '40/3/0/0': 243/1657 (14.67%) Evaluation on validation data (856 items): ytyor153w - 1,6,13,0 "PDR5" "pleiotropic drug resistance protein" 11,7,0,0 "PDR5" "pleiotropic drug resistance protein" 13,1,1,1 "PDR5" "pleiotropic drug resistance protein" 40,2,0,0 "PDR5" "pleiotropic drug resistance protein" 67,4,1,2 "PDR5" "pleiotropic drug resistance protein" 67,50,25,0 "PDR5" "pleiotropic drug resistance protein" ytyhl001w 40,3,0,0 "RPL14B" "ribosomal protein" 5,1,0,0 "RPL14B" "ribosomal protein" ytymr307w - 1,6,99,0 "GAS1" "glycophospholipid-anchored surface glycoprotein" 30,1,0,0 "GAS1" "glycophospholipid-anchored surface glycoprotein" 40,2,0,0 "GAS1" "glycophospholipid-anchored surface glycoprotein" ytydr012w 40,3,0,0 "RPL4B" "ribosomal protein L4.e.B" 5,1,0,0 "RPL4B" "ribosomal protein L4.e.B" ytyel054c 40,3,0,0 "RPL12A" "60S large subunit ribosomal protein L12.e" 5,1,0,0 "RPL12A" "60S large subunit ribosomal protein L12.e" ytyll024c - 6,1,0,0 "SSA2" "heat shock protein of HSP70 family, cytosolic" 6,4,0,0 "SSA2" "heat shock protein of HSP70 family, cytosolic" 8,4,0,0 "SSA2" "heat shock protein of HSP70 family, cytosolic" 8,7,0,0 "SSA2" "heat shock protein of HSP70 family, cytosolic" ytyal038w 1,5,1,0 "CDC19" "pyruvate kinase" 2,1,0,0 "CDC19" "pyruvate kinase" 40,3,0,0 "CDC19" "pyruvate kinase" ytylr109w - 11,1,0,0 "AHP1" "Alkyl hydroperoxide reductase" 13,1,1,1 "AHP1" "Alkyl hydroperoxide reductase" 40,19,0,0 "AHP1" "Alkyl hydroperoxide reductase" ytyhl033c 40,3,0,0 "RPL8A" "60S large subunit ribosomal protein L7a.e.A" 5,1,0,0 "RPL8A" "60S large subunit ribosomal protein L7a.e.A" ytylr388w 40,3,0,0 "RPS29A" "ribosomal protein S29.e.A" 5,1,0,0 "RPS29A" "ribosomal protein S29.e.A" ytyjr047c 40,3,0,0 "ANB1" "translation initiation factor eIF5A.2" 5,4,0,0 "ANB1" "translation initiation factor eIF5A.2" ytygr192c 1,5,1,0 "TDH3" "glyceraldehyde-3-phosphate dehydrogenase 3" 2,1,0,0 "TDH3" "glyceraldehyde-3-phosphate dehydrogenase 3" 40,3,0,0 "TDH3" "glyceraldehyde-3-phosphate dehydrogenase 3" ytypl218w - 40,9,0,0 "SAR1" "GTP-binding protein of the ARF family" 8,7,0,0 "SAR1" "GTP-binding protein of the ARF family" ytylr075w 3,3,1,0 "RPL10" "60S large subunit ribosomal protein" 40,3,0,0 "RPL10" "60S large subunit ribosomal protein" 5,1,0,0 "RPL10" "60S large subunit ribosomal protein" 6,10,0,0 "RPL10" "60S large subunit ribosomal protein" ytyjl080c - 3,3,1,0 "SCP160" "required for maintenance of exact ploidy" 40,10,0,0 "SCP160" "required for maintenance of exact ploidy" 40,7,0,0 "SCP160" "required for maintenance of exact ploidy" ytybr143c 40,3,0,0 "SUP45" "translational release factor" 5,4,0,0 "SUP45" "translational release factor" ytylr325c 40,3,0,0 "RPL38" "60S large subunit ribosomal protein" 5,1,0,0 "RPL38" "60S large subunit ribosomal protein" ytylr333c 40,3,0,0 "RPS25B" "ribosomal protein S25.e.c12" 5,1,0,0 "RPS25B" "ribosomal protein S25.e.c12" ytydl136w 40,3,0,0 "RPL35B" "60S large subunit ribosomal protein" 5,1,0,0 "RPL35B" "60S large subunit ribosomal protein" ytyor133w 40,3,0,0 "EFT1" "translation elongation factor eEF2" 5,4,0,0 "EFT1" "translation elongation factor eEF2" ytyil105c - 4,99,0,0 "null" "weak similarity to probable transcription factor ASK10P" ytygl103w 40,3,0,0 "RPL28" "60S large subunit ribosomal protein L27a.e" 5,1,0,0 "RPL28" "60S large subunit ribosomal protein L27a.e" ytynl096c 40,3,0,0 "RPS7B" "strong similarity to ribosomal protein S7" 5,1,0,0 "RPS7B" "strong similarity to ribosomal protein S7" ytylr432w - 1,3,1,0 "IMD3" "strong similarity to IMP dehydrogenases, Pur5p and YML056c" ytylr441c 14,4,3,3 "RPS1A" "ribosomal protein S3a.e" 40,3,0,0 "RPS1A" "ribosomal protein S3a.e" 5,1,0,0 "RPS1A" "ribosomal protein S3a.e" Validation Accuracy: 17/25 (68.00%) Validation Frequency class '40/3/0/0': 114/856 (13.32%) Evaluation on propertest data (1309 items): ytykl060c 1,5,1,0 "FBA1" "fructose-bisphosphate aldolase" 2,1,0,0 "FBA1" "fructose-bisphosphate aldolase" 40,3,0,0 "FBA1" "fructose-bisphosphate aldolase" ytymr217w - 1,3,1,0 "GUA1" "GMP synthase (glutamine-hydrolyzing)" ytygl123w 40,3,0,0 "RPS2" "40S small subunit ribosomal protein" 5,1,0,0 "RPS2" "40S small subunit ribosomal protein" ytyil053w - 1,5,1,0 "RHR2" "DL-glycerol phosphatase" ytydr418w 40,3,0,0 "RPL12B" "60S large subunit ribosomal protein L12.e" 5,1,0,0 "RPL12B" "60S large subunit ribosomal protein L12.e" ytyor167c 40,3,0,0 "RPS28A" "40S small subunit ribosomal protein S28.e.c15" 5,1,0,0 "RPS28A" "40S small subunit ribosomal protein S28.e.c15" ytypl204w - 3,1,5,1 "HRR25" "casein kinase I, ser/thr/tyr protein kinase" 3,3,2,0 "HRR25" "casein kinase I, ser/thr/tyr protein kinase" 40,10,0,0 "HRR25" "casein kinase I, ser/thr/tyr protein kinase" ytypl220w 40,3,0,0 "RPL1A" "ribosomal protein" 5,1,0,0 "RPL1A" "ribosomal protein" ytyjl130c - 1,3,4,0 "URA2" "multifunctional pyrimidine biosynthesis protein" 40,10,0,0 "URA2" "multifunctional pyrimidine biosynthesis protein" ytyll045c 40,3,0,0 "RPL8B" "60s large subunit ribosomal protein L7a.e.B" 5,1,0,0 "RPL8B" "60s large subunit ribosomal protein L7a.e.B" ytynl119w - 5,1,0,0 "null" "weak similarity to M.jannaschii hypothetical protein MJ1257" ytynl055c - 40,16,0,0 "POR1" "mitochondrial outer membrane porin" 67,99,0,0 "POR1" "mitochondrial outer membrane porin" 8,4,0,0 "POR1" "mitochondrial outer membrane porin" ytyjl052w 1,5,1,0 "TDH1" "glyceraldehyde-3-phosphate dehydrogenase 1" 2,1,0,0 "TDH1" "glyceraldehyde-3-phosphate dehydrogenase 1" 40,3,0,0 "TDH1" "glyceraldehyde-3-phosphate dehydrogenase 1" ytyjl136c 40,3,0,0 "RPS21B" "40S small subunit ribosomal protein S21.e" 5,1,0,0 "RPS21B" "40S small subunit ribosomal protein S21.e" ytybr118w 40,3,0,0 "TEF2" "translation elongation factor eEF1 alpha-A chain, cytosolic" 5,4,0,0 "TEF2" "translation elongation factor eEF1 alpha-A chain, cytosolic" ytydr062w - 1,6,1,0 "LCB2" "serine C-palmitoyltransferase subunit" ytymr121c 40,3,0,0 "RPL15B" "60S large subunit ribosomal protein L15.e.c13" 5,1,0,0 "RPL15B" "60S large subunit ribosomal protein L15.e.c13" ytyjl138c 40,3,0,0 "TIF2" "translation initiation factor eIF4A" 5,4,0,0 "TIF2" "translation initiation factor eIF4A" ytydl208w - 4,1,4,0 "NHP2" "nucleolar rRNA processing protein" 40,10,0,0 "NHP2" "nucleolar rRNA processing protein" ytygl031c 40,3,0,0 "RPL24A" "60S large subunit ribosomal protein L24.e.A" 5,1,0,0 "RPL24A" "60S large subunit ribosomal protein L24.e.A" ytybl072c 40,3,0,0 "RPS8A" "ribosomal protein S8.e" 5,1,0,0 "RPS8A" "ribosomal protein S8.e" ytylr264w 40,3,0,0 "RPS28B" "40S small subunit ribosomal protein S28.e.c12" 5,1,0,0 "RPS28B" "40S small subunit ribosomal protein S28.e.c12" ytybr156c - 3,3,1,0 "SLI15" "Mitotic spindle protein involved in chromosome segregation" ytyol039w 40,3,0,0 "RPP2A" "acidic ribosomal protein P2.beta" 5,1,0,0 "RPP2A" "acidic ribosomal protein P2.beta" ytydl083c 40,3,0,0 "RPS16B" "ribosomal protein S16.e" 5,1,0,0 "RPS16B" "ribosomal protein S16.e" ytyel026w - 4,5,5,1 "SNU13" "component of the U4/U6.U5 snRNP" ytygr118w 40,3,0,0 "RPS23A" "40S small subunit ribosomal protein S23.e" 5,1,0,0 "RPS23A" "40S small subunit ribosomal protein S23.e" ytykr059w 40,3,0,0 "TIF1" "translation initiation factor 4A" 5,4,0,0 "TIF1" "translation initiation factor 4A" ytyjr009c 1,5,1,0 "TDH2" "glyceraldehyde-3-phosphate dehydrogenase 2" 2,1,0,0 "TDH2" "glyceraldehyde-3-phosphate dehydrogenase 2" 40,3,0,0 "TDH2" "glyceraldehyde-3-phosphate dehydrogenase 2" ytygl135w 40,3,0,0 "RPL1B" "60S large subunit ribosomal protein" 5,1,0,0 "RPL1B" "60S large subunit ribosomal protein" ytydr382w 40,3,0,0 "RPP2B" "60S large subunit acidic ribosomal protein" 5,1,0,0 "RPP2B" "60S large subunit acidic ribosomal protein" ytydr050c 1,5,1,0 "TPI1" "triose-phosphate isomerase" 2,1,0,0 "TPI1" "triose-phosphate isomerase" 40,3,0,0 "TPI1" "triose-phosphate isomerase" ytypr074c 1,1,1,0 "TKL1" "transketolase 1" 1,5,1,0 "TKL1" "transketolase 1" 2,7,0,0 "TKL1" "transketolase 1" 40,3,0,0 "TKL1" "transketolase 1" ytynl209w 40,3,0,0 "SSB2" "heat shock protein of HSP70 family, cytosolic" 5,99,0,0 "SSB2" "heat shock protein of HSP70 family, cytosolic" ytynl069c 40,3,0,0 "RPL16B" "60S large subunit ribosomal protein" 5,1,0,0 "RPL16B" "60S large subunit ribosomal protein" ytyhr076w - 2,99,0,0 "null" "weak similarity to C.elegans hypothetical protein CEW09D10" 40,16,0,0 "null" "weak similarity to C.elegans hypothetical protein CEW09D10" ytydr155c 11,1,0,0 "CPH1" "cyclophilin (peptidylprolyl isomerase)" 40,3,0,0 "CPH1" "cyclophilin (peptidylprolyl isomerase)" 6,1,0,0 "CPH1" "cyclophilin (peptidylprolyl isomerase)" ytygr027c 40,3,0,0 "RPS25A" "ribosomal protein S25.e.c7" 5,1,0,0 "RPS25A" "ribosomal protein S25.e.c7" ytyor063w 40,3,0,0 "RPL3" "60S large subunit ribosomal protein L3.e" 5,1,0,0 "RPL3" "60S large subunit ribosomal protein L3.e" Propertest Accuracy: 28/39 (71.79%) Propertest Frequency class '40/3/0/0': 196/1309 (14.97%) New (unknown) data (856 items): ytydr417c - 99,0,0,0 "null" "questionable ORF" ytyor309c - 99,0,0,0 "null" "questionable ORF" ytylr198c - 99,0,0,0 "null" "questionable ORF" ytyjl188c - 99,0,0,0 "BUD19" "questionable ORF" ytyor248w - 99,0,0,0 "TOS11" "hypothetical protein" ytykl086w - 99,0,0,0 "null" "strong similarity to PIR:T39259 hypothetical protein S. pombe" ytydl046w - 99,0,0,0 "null" "strong similarity to phosphatidylglycerol/phosphatidylinositol transfer protein" ytymr067c - 99,0,0,0 "null" "weak similarity to hypothetical protein D. melanogaster" ytylr076c - 99,0,0,0 "null" "questionable ORF" ytygl102c - 99,0,0,0 "null" "questionable ORF" ytygr295c - 99,0,0,0 "COS6" "strong similarity to subtelomeric encoded proteins" ytylr339c - 99,0,0,0 "null" "questionable ORF" ytyil039w - 99,0,0,0 "null" "weak similarity to hypothetical protein SPAC23A1.02c S. pombe" ytylr437c - 99,0,0,0 "null" "hypothetical protein" ytyjr115w - 99,0,0,0 "null" "similarity to hypothetical protein YBL043w" ytypl142c - 99,0,0,0 "null" "questionable ORF" ytykr013w - 99,0,0,0 "PRY2" "similarity to the plant PR-1 class of pathogen related proteins" ytyll067c - 99,0,0,0 "null" "strong similarity to subtelomeric encoded proteins" ytycr013c - 99,0,0,0 "null" "similarity to M.leprae B1496_F1_41 protein" ytyil104c - 99,0,0,0 "null" "similarity to hypothetical S. pombe protein" ytybr162c - 99,0,0,0 "TOS1" "similarity to hypothetical protein YJL171c" ------------------ Rule 1160: cechdeeigagasp_gasch1_heat_shock_25_to_37_20_minutes <= -1.51 ss(_1,_2,b),beta_len(_2,b6_7),alpha_dist(_1,b27.5_36.2),coil_dist(_1,b39.5_45.4) = 0 ss(_1,_2,a),ss(_1,_3,a),alpha_len(_2,b1_3),alpha_dist(_1,b17.9_27.5),beta_dist(_1,b12.4_19.1) = 0 cechdeeigagasp_gasch1_Heat_Shock_000_minutes__hs_2 > 0.97 cechdeeigagasp_gasch1_DBYmsn2/4_real_strain_Plus_0point32_mM_H2O2_20_min > -1.09 ss(_1,_2,c),coil_len(_2,gte10),beta_dist(_1,b19.1_29.1),nss(_2,_3,b),nss(_3,_4,a) = 0 ss(_1,_2,c),coil_len(_2,b3_4),beta_dist(_1,b0.0_6.1),coil_dist(_1,gte57.6),nss(_2,_3,a) = 0 ss(_1,_2,c),coil_len(_2,b3_4),alpha_dist(_1,b17.9_27.5),coil_dist(_1,b45.4_50.5),nss(_2,_3,a) = 0 -> class 40/3/0/0 "cytoplasm" Evaluation on training data (1657 items): ytyer131w 40,3,0,0 "RPS26B" "40S small subunit ribosomal protein S26e-c5" 5,1,0,0 "RPS26B" "40S small subunit ribosomal protein S26e-c5" ytyer117w 40,3,0,0 "RPL23B" "ribosomal protein L23.e" 5,1,0,0 "RPL23B" "ribosomal protein L23.e" ytyil052c 40,3,0,0 "RPL34B" "ribosomal protein L34.e" 5,1,0,0 "RPL34B" "ribosomal protein L34.e" ytybr181c 40,3,0,0 "RPS6B" "ribosomal protein S6.e" 5,1,0,0 "RPS6B" "ribosomal protein S6.e" ytyil133c 40,3,0,0 "RPL16A" "60S large subunit ribosomal protein" 5,1,0,0 "RPL16A" "60S large subunit ribosomal protein" ytybr249c 1,1,1,0 "ARO4" "2-dehydro-3-deoxyphosphoheptonate aldolase, tyrosine-inhibited" 40,3,0,0 "ARO4" "2-dehydro-3-deoxyphosphoheptonate aldolase, tyrosine-inhibited" ytyhr021c 40,3,0,0 "RPS27B" "ribosomal protein S27.e" 5,1,0,0 "RPS27B" "ribosomal protein S27.e" ytybl087c 40,3,0,0 "RPL23A" "60S large subunit ribosomal protein L23.e" 5,1,0,0 "RPL23A" "60S large subunit ribosomal protein L23.e" ytykl081w 40,3,0,0 "TEF4" "translation elongation factor eEF1, gamma chain" 5,4,0,0 "TEF4" "translation elongation factor eEF1, gamma chain" ytyor182c 40,3,0,0 "RPS30B" "ribosomal protein S30" 5,1,0,0 "RPS30B" "ribosomal protein S30" ytygr148c 40,3,0,0 "RPL24B" "60S large subunit ribosomal protein L24.e.B" 5,1,0,0 "RPL24B" "60S large subunit ribosomal protein L24.e.B" ytydr450w 40,3,0,0 "RPS18A" "ribosomal protein S18.e.c4" 5,1,0,0 "RPS18A" "ribosomal protein S18.e.c4" ytylr029c 40,3,0,0 "RPL15A" "60s large subunit ribosomal protein L15.e.c12" 5,1,0,0 "RPL15A" "60s large subunit ribosomal protein L15.e.c12" ytygl147c 40,3,0,0 "RPL9A" "ribosomal protein L9.e" 5,1,0,0 "RPL9A" "ribosomal protein L9.e" ytybr189w 40,3,0,0 "RPS9B" "ribosomal protein S9.e.B" 5,1,0,0 "RPS9B" "ribosomal protein S9.e.B" ytygl148w 1,1,1,0 "ARO2" "chorismate synthase" 40,3,0,0 "ARO2" "chorismate synthase" ytybr031w 40,3,0,0 "RPL4A" "ribosomal protein" 5,1,0,0 "RPL4A" "ribosomal protein" ytykl180w 40,3,0,0 "RPL17A" "ribosomal protein L17.e" 5,1,0,0 "RPL17A" "ribosomal protein L17.e" ytylr061w - 5,1,0,0 "RPL22A" "ribosomal protein" ytylr048w 40,3,0,0 "RPS0B" "40S ribosomal protein p40 homolog B" 5,1,0,0 "RPS0B" "40S ribosomal protein p40 homolog B" 6,10,0,0 "RPS0B" "40S ribosomal protein p40 homolog B" ytybr084c-a 40,3,0,0 "RPL19A" "60S large subunit ribosomal protein L19.e" 5,1,0,0 "RPL19A" "60S large subunit ribosomal protein L19.e" ytyhr141c 40,3,0,0 "RPL42B" "ribosomal protein L36a.e" 5,1,0,0 "RPL42B" "ribosomal protein L36a.e" ytydr300c 1,1,1,0 "PRO1" "glutamate 5-kinase" 40,3,0,0 "PRO1" "glutamate 5-kinase" ytyer056c-a 40,3,0,0 "RPL34A" "ribosomal protein L34" 5,1,0,0 "RPL34A" "ribosomal protein L34" ytyor369c 40,3,0,0 "RPS12" "40S small subunit acidic ribosomal protein S12" 5,1,0,0 "RPS12" "40S small subunit acidic ribosomal protein S12" ytydr064w 40,3,0,0 "RPS13" "ribosomal protein" 5,1,0,0 "RPS13" "ribosomal protein" ytylr340w 40,3,0,0 "RPP0" "acidic ribosomal protein L10.e" 5,1,0,0 "RPP0" "acidic ribosomal protein L10.e" ytylr180w - 1,1,1,0 "SAM1" "S-adenosylmethionine synthetase 1" 1,1,10,0 "SAM1" "S-adenosylmethionine synthetase 1" ytylr167w 40,3,0,0 "RPS31" "ubiquitin/40S small subunit ribosomal protein" 5,1,0,0 "RPS31" "ubiquitin/40S small subunit ribosomal protein" 6,13,1,0 "RPS31" "ubiquitin/40S small subunit ribosomal protein" ytygl030w 40,3,0,0 "RPL30" "60S large subunit ribosomal protein L30.e" 5,1,0,0 "RPL30" "60S large subunit ribosomal protein L30.e" ytyer025w 40,3,0,0 "GCD11" "translation initiation factor eIF2 gamma chain" 5,4,0,0 "GCD11" "translation initiation factor eIF2 gamma chain" ytylr249w 30,1,0,0 "YEF3" "translation elongation factor eEF3" 40,3,0,0 "YEF3" "translation elongation factor eEF3" 5,4,0,0 "YEF3" "translation elongation factor eEF3" ytydr500c 40,3,0,0 "RPL37B" "ribosomal protein L.37.e" 5,1,0,0 "RPL37B" "ribosomal protein L.37.e" ytyor312c 40,3,0,0 "RPL20B" "60S large subunit ribosomal protein" 5,1,0,0 "RPL20B" "60S large subunit ribosomal protein" ytynl178w 40,3,0,0 "RPS3" "ribosomal protein S3.e" 5,1,0,0 "RPS3" "ribosomal protein S3.e" ytyhr010w 40,3,0,0 "RPL27A" "60S large subunit ribosomal protein L27.e" 5,1,0,0 "RPL27A" "60S large subunit ribosomal protein L27.e" ytyor234c - 5,1,0,0 "RPL33B" "ribosomal protein L35a.e.c15" ytygr214w 14,4,3,1 "RPS0A" "40S ribosomal protein p40 homolog A" 40,3,0,0 "RPS0A" "40S ribosomal protein p40 homolog A" 5,1,0,0 "RPS0A" "40S ribosomal protein p40 homolog A" 6,10,0,0 "RPS0A" "40S ribosomal protein p40 homolog A" ytykr057w 40,3,0,0 "RPS21A" "ribosomal protein S21.e" 5,1,0,0 "RPS21A" "ribosomal protein S21.e" ytyjl177w 40,3,0,0 "RPL17B" "60s large subunit ribosomal protein L17.e" 5,1,0,0 "RPL17B" "60s large subunit ribosomal protein L17.e" ytybl092w 40,3,0,0 "RPL32" "60S large subunit ribosomal protein L32.e" 5,1,0,0 "RPL32" "60S large subunit ribosomal protein L32.e" ytymr309c 40,3,0,0 "NIP1" "associated with 40s ribosomal subunit" 5,4,0,0 "NIP1" "associated with 40s ribosomal subunit" ytyel046c - 1,1,1,0 "GLY1" "L-threonine aldolase, low-specific" 1,1,10,0 "GLY1" "L-threonine aldolase, low-specific" ytybr191w 40,3,0,0 "RPL21A" "ribosomal protein L21.e" 5,1,0,0 "RPL21A" "ribosomal protein L21.e" ytylr448w 40,3,0,0 "RPL6B" "60S large subunit ribosomal protein" 5,1,0,0 "RPL6B" "60S large subunit ribosomal protein" ytygr234w 11,1,0,0 "YHB1" "flavohemoglobin" 40,3,0,0 "YHB1" "flavohemoglobin" ytypr132w 40,3,0,0 "RPS23B" "40S small subunit ribosomal protein S23.e" 5,1,0,0 "RPS23B" "40S small subunit ribosomal protein S23.e" ytycr072c - 40,10,0,0 "null" "strong similarity to S. pombe trp-asp repeat containing protein" ytyhl015w 40,3,0,0 "RPS20" "ribosomal protein" 5,1,0,0 "RPS20" "ribosomal protein" ytypl131w 40,3,0,0 "RPL5" "60S large subunit ribosomal protein L5.e" 5,1,0,0 "RPL5" "60S large subunit ribosomal protein L5.e" ytyil148w 40,3,0,0 "RPL40A" "ubiquitin" 5,1,0,0 "RPL40A" "ubiquitin" 6,13,1,0 "RPL40A" "ubiquitin" ytyjr123w 40,3,0,0 "RPS5" "ribosomal protein S5.e" 5,1,0,0 "RPS5" "ribosomal protein S5.e" ytydr447c 40,3,0,0 "RPS17B" "ribosomal protein S17.e.B" 5,1,0,0 "RPS17B" "ribosomal protein S17.e.B" ytygl076c 40,3,0,0 "RPL7A" "60S large subunit ribosomal protein L7.e.A" 5,1,0,0 "RPL7A" "60S large subunit ribosomal protein L7.e.A" ytynl301c 40,3,0,0 "RPL18B" "60S large subunit ribosomal protein L18.e" 5,1,0,0 "RPL18B" "60S large subunit ribosomal protein L18.e" ytynl062c 4,3,3,0 "GCD10" "translation initiation factor eIF3 RNA-binding subunit" 40,3,0,0 "GCD10" "translation initiation factor eIF3 RNA-binding subunit" 5,4,0,0 "GCD10" "translation initiation factor eIF3 RNA-binding subunit" ytyor276w 40,3,0,0 "CAF20" "mRNA CAP-binding protein (eIF4F), 20K subunit" 5,4,0,0 "CAF20" "mRNA CAP-binding protein (eIF4F), 20K subunit" ytyir012w 40,3,0,0 "SQT1" "suppresses dominant-negative mutants of the ribosomal protein QSR1" 6,10,0,0 "SQT1" "suppresses dominant-negative mutants of the ribosomal protein QSR1" ytyor293w 40,3,0,0 "RPS10A" "ribosomal protein S10.e" 5,1,0,0 "RPS10A" "ribosomal protein S10.e" ytynl067w 40,3,0,0 "RPL9B" "ribosomal protein L9.e.c14" 5,1,0,0 "RPL9B" "ribosomal protein L9.e.c14" ytyol120c 40,3,0,0 "RPL18A" "60S large subunit ribosomal protein S18.e" 5,1,0,0 "RPL18A" "60S large subunit ribosomal protein S18.e" ytymr116c 2,16,0,0 "ASC1" "40S small subunit ribosomal protein" 40,3,0,0 "ASC1" "40S small subunit ribosomal protein" 5,1,0,0 "ASC1" "40S small subunit ribosomal protein" 5,4,0,0 "ASC1" "40S small subunit ribosomal protein" ytyil018w 40,3,0,0 "RPL2B" "60S large subunit ribosomal protein L8.e" 5,1,0,0 "RPL2B" "60S large subunit ribosomal protein L8.e" ytyfr031c-a - 5,1,0,0 "RPL2A" "ribosomal protein L8.e" Training Accuracy: 58/64 (90.62%) Training Frequency class '40/3/0/0': 243/1657 (14.67%) Evaluation on validation data (856 items): ytyjl190c 40,3,0,0 "RPS22A" "ribosomal protein S15a.e.c10" 5,1,0,0 "RPS22A" "ribosomal protein S15a.e.c10" ytyhl001w 40,3,0,0 "RPL14B" "ribosomal protein" 5,1,0,0 "RPL14B" "ribosomal protein" ytyjr007w 40,3,0,0 "SUI2" "translation initiation factor eIF2, alpha chain" 5,4,0,0 "SUI2" "translation initiation factor eIF2, alpha chain" ytydr012w 40,3,0,0 "RPL4B" "ribosomal protein L4.e.B" 5,1,0,0 "RPL4B" "ribosomal protein L4.e.B" ytyel054c 40,3,0,0 "RPL12A" "60S large subunit ribosomal protein L12.e" 5,1,0,0 "RPL12A" "60S large subunit ribosomal protein L12.e" ytyjl189w 40,3,0,0 "RPL39" "60S large subunit ribosomal protein L39.e" 5,1,0,0 "RPL39" "60S large subunit ribosomal protein L39.e" ytyhr203c 40,3,0,0 "RPS4B" "ribosomal protein S4.e.c8" 5,1,0,0 "RPS4B" "ribosomal protein S4.e.c8" ytyhl033c 40,3,0,0 "RPL8A" "60S large subunit ribosomal protein L7a.e.A" 5,1,0,0 "RPL8A" "60S large subunit ribosomal protein L7a.e.A" ytygr264c 40,3,0,0 "MES1" "methionyl-tRNA synthetase" 5,10,0,0 "MES1" "methionyl-tRNA synthetase" ytyhr062c - 4,1,4,0 "RPP1" "required for processing of tRNA and 35S rRNA" 4,3,3,0 "RPP1" "required for processing of tRNA and 35S rRNA" 40,10,0,0 "RPP1" "required for processing of tRNA and 35S rRNA" ytyjr145c 40,3,0,0 "RPS4A" "ribosomal protein S4.e.c10" 5,1,0,0 "RPS4A" "ribosomal protein S4.e.c10" ytykl021c - 14,1,0,0 "MAK11" "involved in cell growth and replication of M1 dsRNA virus" ytylr075w 3,3,1,0 "RPL10" "60S large subunit ribosomal protein" 40,3,0,0 "RPL10" "60S large subunit ribosomal protein" 5,1,0,0 "RPL10" "60S large subunit ribosomal protein" 6,10,0,0 "RPL10" "60S large subunit ribosomal protein" ytynl162w 40,3,0,0 "RPL42A" "ribosomal protein L36a.e" 5,1,0,0 "RPL42A" "ribosomal protein L36a.e" ytybr143c 40,3,0,0 "SUP45" "translational release factor" 5,4,0,0 "SUP45" "translational release factor" ytylr325c 40,3,0,0 "RPL38" "60S large subunit ribosomal protein" 5,1,0,0 "RPL38" "60S large subunit ribosomal protein" ytyol121c 40,3,0,0 "RPS19A" "40S small subunit ribosomal protein S19.e" 5,1,0,0 "RPS19A" "40S small subunit ribosomal protein S19.e" ytyer102w 40,3,0,0 "RPS8B" "ribosomal protein S8.e" 5,1,0,0 "RPS8B" "ribosomal protein S8.e" ytydl136w 40,3,0,0 "RPL35B" "60S large subunit ribosomal protein" 5,1,0,0 "RPL35B" "60S large subunit ribosomal protein" ytygl103w 40,3,0,0 "RPL28" "60S large subunit ribosomal protein L27a.e" 5,1,0,0 "RPL28" "60S large subunit ribosomal protein L27a.e" ytypr102c 40,3,0,0 "RPL11A" "ribosomal protein L11.e" 5,1,0,0 "RPL11A" "ribosomal protein L11.e" ytycr034w - 1,5,1,0 "FEN1" "fatty acid elongase required for sphingolipid formation" 1,6,1,0 "FEN1" "fatty acid elongase required for sphingolipid formation" 14,1,0,0 "FEN1" "fatty acid elongase required for sphingolipid formation" 14,4,3,1 "FEN1" "fatty acid elongase required for sphingolipid formation" 14,4,3,3 "FEN1" "fatty acid elongase required for sphingolipid formation" 14,4,3,5 "FEN1" "fatty acid elongase required for sphingolipid formation" 40,2,0,0 "FEN1" "fatty acid elongase required for sphingolipid formation" ytylr441c 14,4,3,3 "RPS1A" "ribosomal protein S3a.e" 40,3,0,0 "RPS1A" "ribosomal protein S3a.e" 5,1,0,0 "RPS1A" "ribosomal protein S3a.e" Validation Accuracy: 20/23 (86.96%) Validation Frequency class '40/3/0/0': 114/856 (13.32%) Evaluation on propertest data (1309 items): ytylr355c - 1,1,1,0 "ILV5" "ketol-acid reducto-isomerase" 40,16,0,0 "ILV5" "ketol-acid reducto-isomerase" ytyer055c - 1,1,1,0 "HIS1" "ATP phosphoribosyltransferase" 1,1,4,0 "HIS1" "ATP phosphoribosyltransferase" ytypl198w 40,3,0,0 "RPL7B" "60S large subunit ribosomal protein" 5,1,0,0 "RPL7B" "60S large subunit ribosomal protein" ytyml073c 40,3,0,0 "RPL6A" "60S large subunit ribosomal protein" 5,1,0,0 "RPL6A" "60S large subunit ribosomal protein" ytypr043w 40,3,0,0 "RPL43A" "ribosomal protein L37a.e" 5,1,0,0 "RPL43A" "ribosomal protein L37a.e" ytynl112w - 4,1,4,0 "DBP2" "ATP-dependent RNA helicase of DEAD box family" 40,10,0,0 "DBP2" "ATP-dependent RNA helicase of DEAD box family" ytyor167c 40,3,0,0 "RPS28A" "40S small subunit ribosomal protein S28.e.c15" 5,1,0,0 "RPS28A" "40S small subunit ribosomal protein S28.e.c15" ytygr085c 40,3,0,0 "RPL11B" "ribosomal protein" 5,1,0,0 "RPL11B" "ribosomal protein" ytyll045c 40,3,0,0 "RPL8B" "60s large subunit ribosomal protein L7a.e.B" 5,1,0,0 "RPL8B" "60s large subunit ribosomal protein L7a.e.B" ytynl119w - 5,1,0,0 "null" "weak similarity to M.jannaschii hypothetical protein MJ1257" ytydr471w 40,3,0,0 "RPL27B" "60S large subunit ribosomal protein" 5,1,0,0 "RPL27B" "60S large subunit ribosomal protein" ytynl151c - 4,1,1,0 "RPC31" "DNA-directed RNA polymerase III, 31 KD subunit" 4,3,1,0 "RPC31" "DNA-directed RNA polymerase III, 31 KD subunit" 40,10,0,0 "RPC31" "DNA-directed RNA polymerase III, 31 KD subunit" ytypr163c 40,3,0,0 "TIF3" "translation initiation factor eIF4B" 5,4,0,0 "TIF3" "translation initiation factor eIF4B" ytyjl136c 40,3,0,0 "RPS21B" "40S small subunit ribosomal protein S21.e" 5,1,0,0 "RPS21B" "40S small subunit ribosomal protein S21.e" ytyor212w - 10,1,5,5 "STE4" "GTP-binding protein beta subunit of the pheromone pathway" 13,11,3,7 "STE4" "GTP-binding protein beta subunit of the pheromone pathway" 14,4,3,1 "STE4" "GTP-binding protein beta subunit of the pheromone pathway" 14,4,3,3 "STE4" "GTP-binding protein beta subunit of the pheromone pathway" 40,2,0,0 "STE4" "GTP-binding protein beta subunit of the pheromone pathway" ytygl031c 40,3,0,0 "RPL24A" "60S large subunit ribosomal protein L24.e.A" 5,1,0,0 "RPL24A" "60S large subunit ribosomal protein L24.e.A" ytygr034w 40,3,0,0 "RPL26B" "60S large subunit ribosomal protein" 5,1,0,0 "RPL26B" "60S large subunit ribosomal protein" ytynl255c - 4,99,0,0 "GIS2" "strong similarity to nucleic acid-binding proteins, similarity to Tetrahymena thermophila cnjB protein" 5,1,0,0 "GIS2" "strong similarity to nucleic acid-binding proteins, similarity to Tetrahymena thermophila cnjB protein" ytybl072c 40,3,0,0 "RPS8A" "ribosomal protein S8.e" 5,1,0,0 "RPS8A" "ribosomal protein S8.e" ytylr185w 40,3,0,0 "RPL37A" "ribosomal protein L37.e" 5,1,0,0 "RPL37A" "ribosomal protein L37.e" ytygr118w 40,3,0,0 "RPS23A" "40S small subunit ribosomal protein S23.e" 5,1,0,0 "RPS23A" "40S small subunit ribosomal protein S23.e" ytymr146c 40,3,0,0 "TIF34" "translation initiation factor eIF3, p39 subunit" 5,4,0,0 "TIF34" "translation initiation factor eIF3, p39 subunit" ytyml063w 40,3,0,0 "RPS1B" "ribosomal protein S3a.e" 5,1,0,0 "RPS1B" "ribosomal protein S3a.e" ytymr242c 40,3,0,0 "RPL20A" "60s large subunit ribosomal protein" 5,1,0,0 "RPL20A" "60s large subunit ribosomal protein" ytykr059w 40,3,0,0 "TIF1" "translation initiation factor 4A" 5,4,0,0 "TIF1" "translation initiation factor 4A" ytydl182w - 1,1,1,0 "LYS20" "homocitrate synthase" 1,5,1,0 "LYS20" "homocitrate synthase" 40,10,0,0 "LYS20" "homocitrate synthase" ytydr429c 40,3,0,0 "TIF35" "translation initiation factor eIF3 (p33 subunit)" 5,4,0,0 "TIF35" "translation initiation factor eIF3 (p33 subunit)" ytypr137w - 4,5,99,0 "RRP9" "protein associated with the U3 small nucleolar RNA, required for pre-ribosomal RNA processing" ytydr382w 40,3,0,0 "RPP2B" "60S large subunit acidic ribosomal protein" 5,1,0,0 "RPP2B" "60S large subunit acidic ribosomal protein" ytynl209w 40,3,0,0 "SSB2" "heat shock protein of HSP70 family, cytosolic" 5,99,0,0 "SSB2" "heat shock protein of HSP70 family, cytosolic" ytybl027w 40,3,0,0 "RPL19B" "60S large subunit ribosomal protein L19.e" 5,1,0,0 "RPL19B" "60S large subunit ribosomal protein L19.e" ytynl069c 40,3,0,0 "RPL16B" "60S large subunit ribosomal protein" 5,1,0,0 "RPL16B" "60S large subunit ribosomal protein" ytybr048w 40,3,0,0 "RPS11B" "ribosomal protein S11.e.B" 5,1,0,0 "RPS11B" "ribosomal protein S11.e.B" ytygr027c 40,3,0,0 "RPS25A" "ribosomal protein S25.e.c7" 5,1,0,0 "RPS25A" "ribosomal protein S25.e.c7" ytyol127w 40,3,0,0 "RPL25" "ribosomal protein L23a.e" 5,1,0,0 "RPL25" "ribosomal protein L23a.e" Propertest Accuracy: 26/35 (74.29%) Propertest Frequency class '40/3/0/0': 196/1309 (14.97%) New (unknown) data (856 items): ytydr417c - 99,0,0,0 "null" "questionable ORF" ytyjl188c - 99,0,0,0 "BUD19" "questionable ORF" ytybr267w - 99,0,0,0 "null" "similarity to hypothetical protein YLR387c" ytyer156c - 99,0,0,0 "null" "similarity to hypothetical C. elegans protein C27H6.5" ytylr062c - 99,0,0,0 "BUD28" "questionable ORF" ytydr324c - 99,0,0,0 "null" "weak similarity to beta transducin from S. pombe and other WD-40 repeat containing proteins" ytyol077c - 99,0,0,0 "BRX1" "strong similarity to C.elegans K12H4.3 protein" ytypr118w - 99,0,0,0 "null" "similarity to M.jannaschii translation initiation factor, eIF-2B" ytykr079c - 99,0,0,0 "null" "similarity to S.pombe hypothetical protein SPAC1D4.10" ytyol101c - 99,0,0,0 "null" "similarity to YOL002c and YDR492w" ytygl102c - 99,0,0,0 "null" "questionable ORF" ytyjl069c - 99,0,0,0 "null" "similarity to C.elegans hypothetical protein" ytygr123c - 98,0,0,0 "PPT1" "protein ser/thr phosphatase" ytynl010w - 99,0,0,0 "null" "weak similarity to B.subtilis hypothetical protein ykrX" ytycr047c - 98,0,0,0 "BUD23" "weak similarity to N-methyltransferases" ytypl142c - 99,0,0,0 "null" "questionable ORF" ytycr087w - 99,0,0,0 "null" "questionable ORF" ytymr305c - 98,0,0,0 "SCW10" "similarity to B.japonicum putative beta-(-6)glucan transferase" ytydl166c - 99,0,0,0 "null" "weak similarity to Pyrococcus horikoshii hypothetical protein PHBJ019" ytynr046w - 99,0,0,0 "null" "strong similarity to S.pombe hypothetical protein SPAC31A2.02" ytygr079w - 99,0,0,0 "null" "hypothetical protein" ytylr413w - 99,0,0,0 "null" "strong similarity to YKL187c" ytyor145c - 99,0,0,0 "null" "strong similarity to hypothtical S. pombe protein and to hypothetical C. elegans protein" ------------------ Rule 64: ss(_1,_2,b),ss(_1,_3,a),beta_len(_2,gte7),coil_dist(_1,b45.4_50.5),nss(_3,_2,b) = 0 cechdeeigagasp_spo_t5_flag <= 0 cechdeeigagasp_gasch1_Nitrogen_Depletion_4_h <= 0.92 cechdeeigagasp_gasch1_YP_fructose_vs_reference_pool_car_2 <= -0.67 ss(_1,_2,b),beta_len(_2,b1_3),alpha_dist(_1,b0.0_17.9),beta_dist(_1,gte29.1) = 0 ss(_1,_2,c),coil_len(_2,b6_10),beta_dist(_1,b0.0_6.1),nss(_2,_3,b),nss(_3,_4,c) = 0 ss(_1,_2,b),beta_len(_2,b3_4),beta_dist(_1,b12.4_19.1),coil_dist(_1,b50.5_57.6),nss(_2,_3,c) = 0 ss(_1,_2,b),beta_len(_2,b1_3),alpha_dist(_1,gte47.6),nss(_2,_3,c),nss(_3,_4,b) = 0 ss(_1,_2,b),ss(_1,_3,a),alpha_len(_3,gte14),beta_len(_2,b1_3),alpha_dist(_1,b0.0_17.9) = 0 ss(_1,_2,b),ss(_1,_3,a),alpha_len(_3,b1_3),beta_len(_2,gte7),beta_dist(_1,b0.0_6.1) = 0 ss(_1,_2,a),alpha_dist(_1,b17.9_27.5),coil_dist(_1,gte57.6),nss(_2,_3,b),nss(_2,_3,b) = 0 ss(_1,_2,a),ss(_1,_3,a),alpha_len(_2,gte14),beta_dist(_1,gte29.1),nss(_3,_4,b) = 0 ss(_1,_2,a),ss(_1,_3,a),alpha_len(_2,b3_6),alpha_dist(_1,b36.2_47.6),coil_dist(_1,b50.5_57.6) = 0 -> class 1/5/0/0 "C-compound and carbohydrate metabolism" Evaluation on training data (1657 items): ytycl040w 1,5,1,0 "GLK1" "aldohexose specific glucokinase" 1,5,7,0 "GLK1" "aldohexose specific glucokinase" 2,1,0,0 "GLK1" "aldohexose specific glucokinase" 40,3,0,0 "GLK1" "aldohexose specific glucokinase" 8,19,0,0 "GLK1" "aldohexose specific glucokinase" ytykl141w - 2,13,0,0 "SDH3" "cytochrome b560 subunit of respiratory complex II" 40,16,0,0 "SDH3" "cytochrome b560 subunit of respiratory complex II" ytyer054c 1,5,4,0 "GIP2" "GLC7P-interacting protein" 2,19,0,0 "GIP2" "GLC7P-interacting protein" ytyfl011w 1,5,7,0 "HXT10" "hexose transporter" 40,2,0,0 "HXT10" "hexose transporter" 67,7,0,0 "HXT10" "hexose transporter" 8,19,0,0 "HXT10" "hexose transporter" ytyfr015c 1,5,1,0 "GSY1" "UDP glucose--starch glucosyltransferase, isoform 1" 2,19,0,0 "GSY1" "UDP glucose--starch glucosyltransferase, isoform 1" 40,3,0,0 "GSY1" "UDP glucose--starch glucosyltransferase, isoform 1" ytylr295c - 13,1,1,3 "ATP14" "F1F0-ATPase complex, subunit h" 2,13,0,0 "ATP14" "F1F0-ATPase complex, subunit h" 40,16,0,0 "ATP14" "F1F0-ATPase complex, subunit h" 67,50,22,0 "ATP14" "F1F0-ATPase complex, subunit h" 8,4,0,0 "ATP14" "F1F0-ATPase complex, subunit h" ytydl004w - 13,1,1,3 "ATP16" "F1F0-ATPase complex, F1 delta subunit" 2,13,0,0 "ATP16" "F1F0-ATPase complex, F1 delta subunit" 40,16,0,0 "ATP16" "F1F0-ATPase complex, F1 delta subunit" 67,50,22,0 "ATP16" "F1F0-ATPase complex, F1 delta subunit" 8,4,0,0 "ATP16" "F1F0-ATPase complex, F1 delta subunit" ytykl148c 1,5,1,0 "SDH1" "succinate dehydrogenase flavoprotein precursor" 2,10,0,0 "SDH1" "succinate dehydrogenase flavoprotein precursor" 40,16,0,0 "SDH1" "succinate dehydrogenase flavoprotein precursor" ytydr277c 1,5,4,0 "MTH1" "repressor of hexose transport genes" ytymr175w - 11,1,0,0 "SIP18" "osmotic stress protein" ytymr256c - 2,13,0,0 "COX7" "cytochrome-c oxidase, subunit VII" 40,16,0,0 "COX7" "cytochrome-c oxidase, subunit VII" 6,10,0,0 "COX7" "cytochrome-c oxidase, subunit VII" ytykl085w 1,5,1,0 "MDH1" "malate dehydrogenase precursor, mitochondrial" 2,10,0,0 "MDH1" "malate dehydrogenase precursor, mitochondrial" 40,16,0,0 "MDH1" "malate dehydrogenase precursor, mitochondrial" ytynl052w - 2,13,0,0 "COX5A" "cytochrome-c oxidase chain V.A precursor" 40,16,0,0 "COX5A" "cytochrome-c oxidase chain V.A precursor" ytybr018c 1,5,1,0 "GAL7" "UDP-glucose--hexose-1-phosphate uridylyltransferase" 40,3,0,0 "GAL7" "UDP-glucose--hexose-1-phosphate uridylyltransferase" ytyor347c 1,5,1,0 "PYK2" "pyruvate kinase, glucose-repressed isoform" 2,1,0,0 "PYK2" "pyruvate kinase, glucose-repressed isoform" ytybr019c 1,5,1,0 "GAL10" "UDP-glucose 4-epimerase" 40,3,0,0 "GAL10" "UDP-glucose 4-epimerase" ytygr248w - 4,3,3,0 "SOL4" "strong similarity to SOL3P" ytypr160w 1,5,1,0 "GPH1" "glycogen phosphorylase" 2,19,0,0 "GPH1" "glycogen phosphorylase" 40,3,0,0 "GPH1" "glycogen phosphorylase" ytydr377w - 2,13,0,0 "ATP17" "ATP synthase complex, subunit f" 40,16,0,0 "ATP17" "ATP synthase complex, subunit f" 6,10,0,0 "ATP17" "ATP synthase complex, subunit f" ytyfr053c 1,5,1,0 "HXK1" "hexokinase I" 2,1,0,0 "HXK1" "hexokinase I" 40,3,0,0 "HXK1" "hexokinase I" ytydr125c - 30,1,0,0 "ECM18" "involved in cell wall biogenesis and architecture" ytyml100w 1,5,1,0 "TSL1" "alpha,alpha-trehalose-phosphate synthase, 123 KD subunit" 2,19,0,0 "TSL1" "alpha,alpha-trehalose-phosphate synthase, 123 KD subunit" 40,3,0,0 "TSL1" "alpha,alpha-trehalose-phosphate synthase, 123 KD subunit" ytymr105c 1,5,1,0 "PGM2" "phosphoglucomutase, major isoform" 2,19,0,0 "PGM2" "phosphoglucomutase, major isoform" 40,3,0,0 "PGM2" "phosphoglucomutase, major isoform" ytyfl053w 1,5,1,0 "DAK2" "dihydroxyacetone kinase" 11,1,0,0 "DAK2" "dihydroxyacetone kinase" ytybr039w - 13,1,1,3 "ATP3" "F1F0-ATPase complex, F1 gamma subunit" 2,13,0,0 "ATP3" "F1F0-ATPase complex, F1 gamma subunit" 40,16,0,0 "ATP3" "F1F0-ATPase complex, F1 gamma subunit" 67,50,22,0 "ATP3" "F1F0-ATPase complex, F1 gamma subunit" 8,4,0,0 "ATP3" "F1F0-ATPase complex, F1 gamma subunit" ytykl016c - 13,1,1,3 "ATP7" "F1F0-ATPase complex, FO D subunit" 2,13,0,0 "ATP7" "F1F0-ATPase complex, FO D subunit" 40,16,0,0 "ATP7" "F1F0-ATPase complex, FO D subunit" 67,50,22,0 "ATP7" "F1F0-ATPase complex, FO D subunit" 8,4,0,0 "ATP7" "F1F0-ATPase complex, FO D subunit" ytynl237w - 2,13,0,0 "YTP1" "weak similarity to mitochondrial electron transport proteins" ytynl334c - 11,1,0,0 "SNO2" "strong similarity to hypothetical proteins YFL060c and YMR095c" ytyil107c 1,5,1,0 "PFK26" "6-phosphofructose-2-kinase, isozyme 1" 1,5,4,0 "PFK26" "6-phosphofructose-2-kinase, isozyme 1" 40,3,0,0 "PFK26" "6-phosphofructose-2-kinase, isozyme 1" ytyjr095w 1,5,4,0 "SFC1" "succinate-fumarate transporter" 1,5,7,0 "SFC1" "succinate-fumarate transporter" 40,16,0,0 "SFC1" "succinate-fumarate transporter" 67,7,0,0 "SFC1" "succinate-fumarate transporter" 8,4,0,0 "SFC1" "succinate-fumarate transporter" ytydl067c - 2,13,0,0 "COX9" "cytochrome-c oxidase chain VIIA" 40,16,0,0 "COX9" "cytochrome-c oxidase chain VIIA" 6,10,0,0 "COX9" "cytochrome-c oxidase chain VIIA" ytyel024w - 2,13,0,0 "RIP1" "ubiquinol--cytochrome-c reductase iron-sulfur protein precursor" 40,16,0,0 "RIP1" "ubiquinol--cytochrome-c reductase iron-sulfur protein precursor" ytylr345w 1,5,4,0 "null" "similarity to PFK26P and other 6-phosphofructo-2-kinases" 2,1,0,0 "null" "similarity to PFK26P and other 6-phosphofructo-2-kinases" ytynl274c 1,5,1,0 "null" "similarity to glycerate- and formate-dehydrogenases" ytydr343c 1,5,7,0 "HXT6" "high-affinity hexose transporter" 40,2,0,0 "HXT6" "high-affinity hexose transporter" 67,7,0,0 "HXT6" "high-affinity hexose transporter" 8,19,0,0 "HXT6" "high-affinity hexose transporter" ytybl078c - 40,3,0,0 "AUT7" "essential for autophagy" 6,13,4,0 "AUT7" "essential for autophagy" 8,22,0,0 "AUT7" "essential for autophagy" ytykr058w - 2,19,0,0 "GLG1" "self-glycosylating initiator of glycogen synthesis" ytykl150w - 2,13,0,0 "MCR1" "cytochrome-b5 reductase" 40,16,0,0 "MCR1" "cytochrome-b5 reductase" ytyer065c 1,5,1,0 "ICL1" "isocitrate lyase" 2,1,0,0 "ICL1" "isocitrate lyase" 2,22,0,0 "ICL1" "isocitrate lyase" 40,3,0,0 "ICL1" "isocitrate lyase" ytyjr121w - 13,1,1,3 "ATP2" "F1F0-ATPase complex, F1 beta subunit" 2,13,0,0 "ATP2" "F1F0-ATPase complex, F1 beta subunit" 40,16,0,0 "ATP2" "F1F0-ATPase complex, F1 beta subunit" 67,50,22,0 "ATP2" "F1F0-ATPase complex, F1 beta subunit" 8,4,0,0 "ATP2" "F1F0-ATPase complex, F1 beta subunit" ytyhl032c 1,5,1,0 "GUT1" "glycerol kinase" ytyor178c 1,5,4,0 "GAC1" "ser/thr phosphoprotein phosphatase 1, regulatory chain" 2,19,0,0 "GAC1" "ser/thr phosphoprotein phosphatase 1, regulatory chain" 40,3,0,0 "GAC1" "ser/thr phosphoprotein phosphatase 1, regulatory chain" ytydr380w 1,5,1,0 "ARO10" "similarity to PDC6P, THI3P and to pyruvate decarboxylases" 2,16,0,0 "ARO10" "similarity to PDC6P, THI3P and to pyruvate decarboxylases" ytypl134c - 67,16,0,0 "ODC1" "similarity to ADP,ATP carrier proteins" 8,4,0,0 "ODC1" "similarity to ADP,ATP carrier proteins" ytykl093w - 30,16,0,0 "MBR1" "required for optimal growth on glycerol" 4,5,1,4 "MBR1" "required for optimal growth on glycerol" ytykr097w 1,5,1,0 "PCK1" "phosphoenolpyruvate carboxykinase" 2,1,0,0 "PCK1" "phosphoenolpyruvate carboxykinase" 40,3,0,0 "PCK1" "phosphoenolpyruvate carboxykinase" ytydr529c - 2,13,0,0 "QCR7" "ubiquinol--cytochrome-c reductase subunit 7" 40,16,0,0 "QCR7" "ubiquinol--cytochrome-c reductase subunit 7" 6,10,0,0 "QCR7" "ubiquinol--cytochrome-c reductase subunit 7" ytypl135w - 1,2,1,0 "ISU1" "strong similarity to nitrogen fixation protein (nifU)" ytygr256w 1,5,1,0 "GND2" "phosphogluconate dehydrogenase" 2,7,0,0 "GND2" "phosphogluconate dehydrogenase" ytyjr048w - 2,13,0,0 "CYC1" "cytochrome-c isoform 1" 40,16,0,0 "CYC1" "cytochrome-c isoform 1" ytybr298c 1,5,7,0 "MAL31" "maltose permease" 40,2,0,0 "MAL31" "maltose permease" 67,7,0,0 "MAL31" "maltose permease" 8,19,0,0 "MAL31" "maltose permease" ytygr194c 1,5,1,0 "XKS1" "xylulokinase" ytybr299w 1,5,1,0 "MAL32" "alpha-glucosidase" 2,19,0,0 "MAL32" "alpha-glucosidase" 40,3,0,0 "MAL32" "alpha-glucosidase" ytygl191w - 2,13,0,0 "COX13" "cytochrome-c oxidase chain VIa" 40,16,0,0 "COX13" "cytochrome-c oxidase chain VIa" ytydl119c - 40,16,0,0 "null" "similarity to bovine Graves disease carrier protein" 8,4,0,0 "null" "similarity to bovine Graves disease carrier protein" ytyjr149w - 1,2,1,0 "null" "similarity to 2-nitropropane dioxygenase" ytygr292w 1,5,1,0 "MAL12" "alpha-glucosidase of the MAL1 locus" 40,3,0,0 "MAL12" "alpha-glucosidase of the MAL1 locus" ytydr074w 1,5,1,0 "TPS2" "alpha,alpha-trehalose-phosphate synthase, 102 KD subunit" 11,1,0,0 "TPS2" "alpha,alpha-trehalose-phosphate synthase, 102 KD subunit" 2,19,0,0 "TPS2" "alpha,alpha-trehalose-phosphate synthase, 102 KD subunit" 40,16,0,0 "TPS2" "alpha,alpha-trehalose-phosphate synthase, 102 KD subunit" 40,3,0,0 "TPS2" "alpha,alpha-trehalose-phosphate synthase, 102 KD subunit" ytypl271w - 13,1,1,3 "ATP15" "F1F0-ATPase complex, F1 epsilon subunit" 2,13,0,0 "ATP15" "F1F0-ATPase complex, F1 epsilon subunit" 40,16,0,0 "ATP15" "F1F0-ATPase complex, F1 epsilon subunit" 67,50,22,0 "ATP15" "F1F0-ATPase complex, F1 epsilon subunit" 8,4,0,0 "ATP15" "F1F0-ATPase complex, F1 epsilon subunit" ytygr043c 1,5,1,0 "null" "strong similarity to transaldolase" 2,7,0,0 "null" "strong similarity to transaldolase" ytyml054c 1,5,1,0 "CYB2" "lactate dehydrogenase cytochrome b2" 2,13,0,0 "CYB2" "lactate dehydrogenase cytochrome b2" 40,16,0,0 "CYB2" "lactate dehydrogenase cytochrome b2" Training Accuracy: 33/61 (54.10%) Training Frequency class '1/5/0/0': 176/1657 (10.62%) Evaluation on validation data (856 items): ytypl006w - 1,6,99,0 "NCR1" "similarity to human PTC protein involved in nevoid basal cell carcinoma syndrome" ytyer053c - 1,4,7,0 "null" "strong similarity to mitochondrial phosphate carrier protein" 67,4,7,0 "null" "strong similarity to mitochondrial phosphate carrier protein" 8,4,0,0 "null" "strong similarity to mitochondrial phosphate carrier protein" ytyol153c - 1,2,1,0 "null" "strong similarity to CPS1P" 6,13,99,0 "null" "strong similarity to CPS1P" ytykl217w 1,5,7,0 "JEN1" "carboxylic acid transporter protein" 67,7,0,0 "JEN1" "carboxylic acid transporter protein" ytyel059c-a - 30,16,0,0 "SOM1" "required for mitochondrial IMP1 peptidase function" 40,16,0,0 "SOM1" "required for mitochondrial IMP1 peptidase function" 6,4,0,0 "SOM1" "required for mitochondrial IMP1 peptidase function" 8,4,0,0 "SOM1" "required for mitochondrial IMP1 peptidase function" ytyll009c - 13,1,1,1 "COX17" "interacts genetically with SCO1 and SCO2 in cytochrome oxidase assembly" 2,13,0,0 "COX17" "interacts genetically with SCO1 and SCO2 in cytochrome oxidase assembly" 40,16,0,0 "COX17" "interacts genetically with SCO1 and SCO2 in cytochrome oxidase assembly" 40,3,0,0 "COX17" "interacts genetically with SCO1 and SCO2 in cytochrome oxidase assembly" 6,10,0,0 "COX17" "interacts genetically with SCO1 and SCO2 in cytochrome oxidase assembly" ytyol157c 1,5,1,0 "null" "strong similarity to alpha-glucosidases" 2,19,0,0 "null" "strong similarity to alpha-glucosidases" ytyal060w 1,5,1,0 "BDH1" "stereospecific (2R, 3R)-2,3-butanediol dehydrogenase" ytylr377c 1,5,1,0 "FBP1" "fructose-1,6-bisphosphatase" 2,1,0,0 "FBP1" "fructose-1,6-bisphosphatase" 40,3,0,0 "FBP1" "fructose-1,6-bisphosphatase" ytyil155c 1,5,1,0 "GUT2" "glycerol-3-phosphate dehydrogenase, mitochondrial" 40,16,0,0 "GUT2" "glycerol-3-phosphate dehydrogenase, mitochondrial" ytynr045w - 40,16,0,0 "PET494" "translational activator, mitochondrial" 5,7,0,0 "PET494" "translational activator, mitochondrial" ytyor185c - 4,7,0,0 "GSP2" "GTP-binding protein of the RAS superfamily" 40,10,0,0 "GSP2" "GTP-binding protein of the RAS superfamily" 40,3,0,0 "GSP2" "GTP-binding protein of the RAS superfamily" 8,1,0,0 "GSP2" "GTP-binding protein of the RAS superfamily" ytylr394w - 3,1,5,0 "CST9" "protein required for synapsis, meiotic recombination, sporulation, proper chromosome segregation, and synaptonemal complex formation" ytylr136c - 4,3,6,0 "TIS11" "tRNA-specific adenosine deaminase 3" ytypl230w - 4,99,0,0 "USV1" "similarity to RGM1P, weak similarity to transcription factors" ytylr304c 1,5,1,0 "ACO1" "aconitate hydratase" 2,10,0,0 "ACO1" "aconitate hydratase" 2,22,0,0 "ACO1" "aconitate hydratase" 40,16,0,0 "ACO1" "aconitate hydratase" 40,3,0,0 "ACO1" "aconitate hydratase" ytylr151c - 1,7,99,0 "PCD1" "peroxisomal nudix hydrolase, has diphosphatase activity specific for coenzyme A and CoA derivatives" ytyor110w 1,5,4,0 "TFC7" "TFIIIC (transcription initiation factor) subunit, 55 kDa" 4,1,1,0 "TFC7" "TFIIIC (transcription initiation factor) subunit, 55 kDa" 4,3,1,0 "TFC7" "TFIIIC (transcription initiation factor) subunit, 55 kDa" 40,10,0,0 "TFC7" "TFIIIC (transcription initiation factor) subunit, 55 kDa" ytyjl221c 1,5,1,0 "FSP2" "strong similarity to alpha-D-glucosidase" 2,19,0,0 "FSP2" "strong similarity to alpha-D-glucosidase" ytyfl051c - 40,1,0,0 "null" "strong similarity to FLO1P, FLO5P and FLO9P - putative pseudogene" ytyfl052w 1,5,4,0 "null" "strong similarity to Mal63p, YPR196w and MAL13P" 4,5,1,4 "null" "strong similarity to Mal63p, YPR196w and MAL13P" ytyjr073c - 1,6,1,0 "OPI3" "methylene-fatty-acyl-phospholipid synthase" 40,7,0,0 "OPI3" "methylene-fatty-acyl-phospholipid synthase" ytylr081w 1,5,7,0 "GAL2" "galactose (and glucose) permease" 40,2,0,0 "GAL2" "galactose (and glucose) permease" 67,7,0,0 "GAL2" "galactose (and glucose) permease" 8,19,0,0 "GAL2" "galactose (and glucose) permease" ytypl078c - 13,1,1,3 "ATP4" "F1F0-ATPase complex, F0 subunit B" 2,13,0,0 "ATP4" "F1F0-ATPase complex, F0 subunit B" 40,16,0,0 "ATP4" "F1F0-ATPase complex, F0 subunit B" 67,50,22,0 "ATP4" "F1F0-ATPase complex, F0 subunit B" 8,4,0,0 "ATP4" "F1F0-ATPase complex, F0 subunit B" ytyjr077c - 1,4,7,0 "MIR1" "phosphate transport protein, mitochondrial (MCF)" 13,1,3,3 "MIR1" "phosphate transport protein, mitochondrial (MCF)" 40,16,0,0 "MIR1" "phosphate transport protein, mitochondrial (MCF)" 67,4,7,0 "MIR1" "phosphate transport protein, mitochondrial (MCF)" 8,4,0,0 "MIR1" "phosphate transport protein, mitochondrial (MCF)" ytynl318c 1,5,7,0 "HXT14" "hexose transport protein" 40,2,0,0 "HXT14" "hexose transport protein" 67,7,0,0 "HXT14" "hexose transport protein" 8,19,0,0 "HXT14" "hexose transport protein" ytynl173c - 10,1,5,5 "MDG1" "GTP-binding protein of the pheromone-response pathway" 13,11,3,7 "MDG1" "GTP-binding protein of the pheromone-response pathway" 14,4,3,3 "MDG1" "GTP-binding protein of the pheromone-response pathway" 40,2,0,0 "MDG1" "GTP-binding protein of the pheromone-response pathway" ytykl026c - 11,7,0,0 "GPX1" "glutathione peroxidase" ytypr191w - 2,13,0,0 "QCR2" "ubiquinol--cytochrome-c reductase 40KD chain II" 40,16,0,0 "QCR2" "ubiquinol--cytochrome-c reductase 40KD chain II" 6,10,0,0 "QCR2" "ubiquinol--cytochrome-c reductase 40KD chain II" ytydr148c 1,5,1,0 "KGD2" "2-oxoglutarate dehydrogenase complex E2 component" 2,10,0,0 "KGD2" "2-oxoglutarate dehydrogenase complex E2 component" 40,16,0,0 "KGD2" "2-oxoglutarate dehydrogenase complex E2 component" ytypl097w - 40,16,0,0 "MSY1" "tyrosyl-tRNA synthetase" 5,10,0,0 "MSY1" "tyrosyl-tRNA synthetase" Validation Accuracy: 12/31 (38.71%) Validation Frequency class '1/5/0/0': 94/856 (10.98%) Evaluation on propertest data (1309 items): ytypr120c - 3,1,3,0 "CLB5" "cyclin, B-type" 3,3,1,0 "CLB5" "cyclin, B-type" 3,3,2,0 "CLB5" "cyclin, B-type" ytykl062w 1,5,4,0 "MSN4" "transcriptional activator" 11,1,0,0 "MSN4" "transcriptional activator" 4,5,1,4 "MSN4" "transcriptional activator" 40,10,0,0 "MSN4" "transcriptional activator" 40,3,0,0 "MSN4" "transcriptional activator" ytyol067c 1,5,4,0 "RTG1" "basic helix-loop-helix transcription factor that regulates CIT2 gene expression" 4,5,1,4 "RTG1" "basic helix-loop-helix transcription factor that regulates CIT2 gene expression" 40,10,0,0 "RTG1" "basic helix-loop-helix transcription factor that regulates CIT2 gene expression" ytyil070c - 40,16,0,0 "MAM33" "mitochondrial acidic matrix protein" ytymr250w - 1,1,1,0 "GAD1" "similarity to glutamate decarboxylases" ytyhr008c - 11,7,0,0 "SOD2" "superoxide dismutase (Mn) precursor, mitochondrial" 40,16,0,0 "SOD2" "superoxide dismutase (Mn) precursor, mitochondrial" ytyil136w - 40,16,0,0 "OM45" "protein of the outer mitochondrial membrane" ytydr516c 1,5,1,0 "null" "strong similarity to glucokinase" ytyfl014w 1,5,1,0 "HSP12" "heat shock protein" 1,6,7,0 "HSP12" "heat shock protein" 11,1,0,0 "HSP12" "heat shock protein" 13,11,3,13 "HSP12" "heat shock protein" 3,1,5,1 "HSP12" "heat shock protein" ytyll041c - 2,10,0,0 "SDH2" "succinate dehydrogenase iron-sulfur protein subunit" 40,16,0,0 "SDH2" "succinate dehydrogenase iron-sulfur protein subunit" ytydr009w 1,5,4,0 "GAL3" "galactokinase" 4,5,1,4 "GAL3" "galactokinase" ytyfl030w - 1,1,1,0 "null" "similarity to several transaminases" 1,1,10,0 "null" "similarity to several transaminases" 1,2,1,0 "null" "similarity to several transaminases" ytyhl040c - 11,7,0,0 "ARN1" "ferrichrome-type siderophore transporter" 67,28,0,0 "ARN1" "ferrichrome-type siderophore transporter" ytylr395c - 2,13,0,0 "COX8" "cytochrome-c oxidase chain VIII" 40,16,0,0 "COX8" "cytochrome-c oxidase chain VIII" ytybl030c - 1,3,19,0 "PET9" "ADP/ATP carrier protein (MCF)" 40,16,0,0 "PET9" "ADP/ATP carrier protein (MCF)" 67,16,0,0 "PET9" "ADP/ATP carrier protein (MCF)" 8,4,0,0 "PET9" "ADP/ATP carrier protein (MCF)" ytynl055c - 40,16,0,0 "POR1" "mitochondrial outer membrane porin" 67,99,0,0 "POR1" "mitochondrial outer membrane porin" 8,4,0,0 "POR1" "mitochondrial outer membrane porin" ytydr298c - 13,1,1,3 "ATP5" "F1F0-ATPase complex, OSCP subunit" 2,13,0,0 "ATP5" "F1F0-ATPase complex, OSCP subunit" 40,16,0,0 "ATP5" "F1F0-ATPase complex, OSCP subunit" 67,50,22,0 "ATP5" "F1F0-ATPase complex, OSCP subunit" 8,4,0,0 "ATP5" "F1F0-ATPase complex, OSCP subunit" ytyor017w - 40,16,0,0 "PET127" "component of mitochondrial translation system" 5,7,0,0 "PET127" "component of mitochondrial translation system" ytyhl047c - 11,7,0,0 "TAF1" "siderophore transporter for triacetylfusarinine C" 67,28,0,0 "TAF1" "siderophore transporter for triacetylfusarinine C" ytyhr001w-a - 2,13,0,0 "QCR10" "ubiquinol--cytochrome-c reductase 8.5 kDa subunit" 40,16,0,0 "QCR10" "ubiquinol--cytochrome-c reductase 8.5 kDa subunit" ytypl013c - 40,16,0,0 "null" "strong similarity to N.crassa mitochondrial ribosomal protein S24" 5,1,0,0 "null" "strong similarity to N.crassa mitochondrial ribosomal protein S24" ytydr342c 1,5,7,0 "HXT7" "high-affinity hexose transporter" 40,2,0,0 "HXT7" "high-affinity hexose transporter" 67,7,0,0 "HXT7" "high-affinity hexose transporter" 8,19,0,0 "HXT7" "high-affinity hexose transporter" ytydl087c - 4,5,5,1 "LUC7" "yeast U1 snRNP protein with a role in 5' splice site recognition" ytydl181w - 2,99,0,0 "INH1" "inhibitor of mitochondrial ATPase" 40,16,0,0 "INH1" "inhibitor of mitochondrial ATPase" ytygr070w 1,5,4,0 "ROM1" "GDP/GTP exchange protein for RHO1P" 14,1,3,0 "ROM1" "GDP/GTP exchange protein for RHO1P" 14,4,3,1 "ROM1" "GDP/GTP exchange protein for RHO1P" 62,2,5,0 "ROM1" "GDP/GTP exchange protein for RHO1P" ytybr020w 1,5,1,0 "GAL1" "galactokinase" 4,5,1,4 "GAL1" "galactokinase" 40,3,0,0 "GAL1" "galactokinase" ytybl099w - 13,1,1,3 "ATP1" "F1F0-ATPase complex, F1 alpha subunit" 2,13,0,0 "ATP1" "F1F0-ATPase complex, F1 alpha subunit" 40,16,0,0 "ATP1" "F1F0-ATPase complex, F1 alpha subunit" 67,50,22,0 "ATP1" "F1F0-ATPase complex, F1 alpha subunit" 8,4,0,0 "ATP1" "F1F0-ATPase complex, F1 alpha subunit" ytylr038c - 2,13,0,0 "COX12" "cytochrome-c oxidase, subunit VIB" 40,16,0,0 "COX12" "cytochrome-c oxidase, subunit VIB" 6,10,0,0 "COX12" "cytochrome-c oxidase, subunit VIB" ytygl156w 1,5,1,0 "AMS1" "alpha-mannosidase" 40,25,0,0 "AMS1" "alpha-mannosidase" ytyhr051w - 2,13,0,0 "COX6" "cytochrome-c oxidase subunit VI" 40,16,0,0 "COX6" "cytochrome-c oxidase subunit VI" ytybr296c - 1,4,7,0 "PHO89" "Na+-coupled phosphate transport protein, high affinity" 13,1,1,99 "PHO89" "Na+-coupled phosphate transport protein, high affinity" 13,1,3,3 "PHO89" "Na+-coupled phosphate transport protein, high affinity" 67,4,7,0 "PHO89" "Na+-coupled phosphate transport protein, high affinity" ytyjl045w 1,5,1,0 "null" "strong similarity to succinate dehydrogenase flavoprotein" 2,10,0,0 "null" "strong similarity to succinate dehydrogenase flavoprotein" ytybr297w 1,5,4,0 "MAL33" "maltose fermentation regulatory protein" 4,5,1,4 "MAL33" "maltose fermentation regulatory protein" 40,10,0,0 "MAL33" "maltose fermentation regulatory protein" ytyjl063c - 40,16,0,0 "MRPL8" "ribosomal protein L17, mitochondrial" 5,1,0,0 "MRPL8" "ribosomal protein L17, mitochondrial" ytyor120w 1,5,1,0 "GCY1" "galactose-induced protein of aldo/keto reductase family" 40,3,0,0 "GCY1" "galactose-induced protein of aldo/keto reductase family" ytyhr137w - 1,1,4,0 "ARO9" "aromatic amino acid aminotransferase II" ytygr008c - 2,13,0,0 "STF2" "ATPase stabilizing factor" 30,1,0,0 "STF2" "ATPase stabilizing factor" 40,16,0,0 "STF2" "ATPase stabilizing factor" ytybl045c - 2,13,0,0 "COR1" "ubiquinol--cytochrome-c reductase 44K core protein" 40,16,0,0 "COR1" "ubiquinol--cytochrome-c reductase 44K core protein" ytykl103c - 40,25,0,0 "LAP4" "aminopeptidase yscI precursor, vacuolar" 6,13,4,0 "LAP4" "aminopeptidase yscI precursor, vacuolar" ytydl215c - 1,1,10,0 "GDH2" "NAD-specific glutamate dehydrogenase (NAD)" 1,2,1,0 "GDH2" "NAD-specific glutamate dehydrogenase (NAD)" 40,3,0,0 "GDH2" "NAD-specific glutamate dehydrogenase (NAD)" ytylr174w 1,5,1,0 "IDP2" "isocitrate dehydrogenase, cytosolic" 2,10,0,0 "IDP2" "isocitrate dehydrogenase, cytosolic" 40,3,0,0 "IDP2" "isocitrate dehydrogenase, cytosolic" ytypr193c - 3,1,9,5 "HPA2" "Histone and other Protein Acetyltransferase" 6,7,0,0 "HPA2" "Histone and other Protein Acetyltransferase" ytypr020w - 2,13,0,0 "ATP20" "subunit G of the dimeric form of mitochondrial F1F0-ATP Synthase" 40,16,0,0 "ATP20" "subunit G of the dimeric form of mitochondrial F1F0-ATP Synthase" ytyhr096c 1,5,7,0 "HXT5" "member of the hexose transporter family" 40,2,0,0 "HXT5" "member of the hexose transporter family" 67,7,0,0 "HXT5" "member of the hexose transporter family" 8,19,0,0 "HXT5" "member of the hexose transporter family" Propertest Accuracy: 14/44 (31.82%) Propertest Frequency class '1/5/0/0': 145/1309 (11.08%) New (unknown) data (856 items): ytylr023c - 99,0,0,0 "null" "similarity to S.pombe hypothetical protein SPAC30D11.11" ytycl042w - 99,0,0,0 "null" "questionable ORF" ytymr090w - 99,0,0,0 "null" "strong similarity to B. subtilis conserved hypothetical protein yhfK" ytylr294c - 99,0,0,0 "null" "questionable ORF" ytymr251w - 99,0,0,0 "null" "strong similarity to YKR076w and YGR154c" ytyfr017c - 99,0,0,0 "null" "hypothetical protein" ytygl066w - 99,0,0,0 "null" "similarity to human ATAXIN 7" ytyer158c - 99,0,0,0 "null" "weak similarity to AFR1P" ytykl187c - 99,0,0,0 "null" "strong similarity to hypothetical protein YLR413w" ytylr161w - 99,0,0,0 "null" "identical to hypothetical proteins YLR156w and YLR159w" ytyor382w - 99,0,0,0 "FIT2" "hypothetical protein" ytyor383c - 98,0,0,0 "FIT3" "weak similarity to L.mexicana secreted acid phosphatase 2" ytyor289w - 99,0,0,0 "null" "similarity to C.elegans hypothetical protein" ytybr230c - 99,0,0,0 "null" "hypothetical protein" ytyor387c - 99,0,0,0 "null" "strong similarity to YGL258w" ytyor053w - 99,0,0,0 "null" "similarity to protamines" ytyor215c - 99,0,0,0 "null" "similarity to M.xanthus hypothetical protein" ytyhr087w - 99,0,0,0 "null" "weak similarity to PIR:T50363 hypothetical protein SPBC21C3.19 S.pombe" ytynl100w - 99,0,0,0 "null" "hypothetical protein" ytybr004c - 99,0,0,0 "null" "similarity to S.pombe hypothetical protein SPAC18B11.05" ytydl089w - 99,0,0,0 "null" "weak similarity to hypothetical protein S. pombe" ytynl200c - 99,0,0,0 "null" "strong similarity to human TGR-CL10C" ytygr250c - 99,0,0,0 "null" "weak similarity to human cleavage stimulation factor 64K chain" ytyil161w - 99,0,0,0 "null" "hypothetical protein" ytypr151c - 99,0,0,0 "null" "weak similarity to YPL159c" ytyml089c - 99,0,0,0 "null" "questionable ORF" ytymr306c-a - 99,0,0,0 "null" "questionable ORF" ytynl144c - 99,0,0,0 "null" "similarity to YHR131c" ytybr203w - 99,0,0,0 "null" "hypothetical protein" ytyor121c - 99,0,0,0 "null" "questionable ORF" ytygr021w - 99,0,0,0 "null" "similarity to M.leprae yfcA protein" ytydr070c - 99,0,0,0 "null" "hypothetical protein" ytyir016w - 99,0,0,0 "null" "weak similarity to YOL036w" ytygr290w - 99,0,0,0 "null" "hypothetical protein" ytycr006c - 99,0,0,0 "null" "hypothetical protein" ytylr431c - 99,0,0,0 "null" "weak similarity to rabbit trichohyalin" ytykl123w - 99,0,0,0 "null" "questionable ORF" ytydl091c - 99,0,0,0 "null" "weak similarity to mouse FAF1 protein" ytyer037w - 99,0,0,0 "PHM8" "strong similarity to hypothetical protein YGL224c" ytypr123c - 99,0,0,0 "null" "questionable ORF" ytypl107w - 99,0,0,0 "null" "similarity to hypothetical protein SPCP31B10.02 S. pombe" ytyol084w - 99,0,0,0 "PHM7" "similarity to A.thaliana hyp1 protein" ytyel057c - 99,0,0,0 "null" "hypothetical protein" ytynl115c - 99,0,0,0 "null" "weak similarity to S.pombe hypothetical protein SPAC23C11" ytybr285w - 99,0,0,0 "null" "weak similarity to RecQ5, D. melanogaster" ytypl047w - 99,0,0,0 "null" "weak similarity to A. thaliana genomic DNA" ytydl121c - 99,0,0,0 "null" "hypothetical protein" ytyor032c - 98,0,0,0 "HMS1" "weak similarity to DNA-binding proteins" ytybr051w - 99,0,0,0 "null" "questionable ORF" ytydr475c - 99,0,0,0 "null" "weak similarity to N-terminal region of YOR019w" ytylr149c - 99,0,0,0 "null" "weak similarity to hypothetical protein SPCC4G3.03 S. pombe" ytydl222c - 99,0,0,0 "null" "strong similarity to hypothetical protein YNL194c and similarity to YML052w" ytynl092w - 99,0,0,0 "null" "similarity to hypothetical C. elegans proteins Y48E1C.2 and Y48E1C.c" ytyor135c - 99,0,0,0 "null" "questionable ORF" ytypl186c - 99,0,0,0 "null" "weak similarity to Xenopus protein xlgv7" ytylr346c - 99,0,0,0 "null" "weak similarity to YGR035c" ytylr281c - 98,0,0,0 "null" "similarity to polypeptide chain release factors" ytyml128c - 99,0,0,0 "MSC1" "weak similarity to S. pombe SPBC365.12c protein of unknown function" ytyjr020w - 99,0,0,0 "null" "questionable ORF" ytybl100c - 99,0,0,0 "null" "questionable ORF" ytydr544c - 99,0,0,0 "null" "strong similarity to subtelomeric encoded proteins" ytyor374w - 98,0,0,0 "ALD4" "aldehyde dehydrogenase, mitochondrial" ytyjr067c - 99,0,0,0 "YAE1" "similarity to S. pombe SPAC2C4.12c putative phosphotransferase" ytylr156w - 99,0,0,0 "null" "identical to hypothetical proteins YLR161w and YLR159w" ytymr114c - 99,0,0,0 "null" "similarity to B. subtilis conserved hypothetical proteins yoqW and yoaM" ytykl107w - 99,0,0,0 "null" "weak similarity to S.antibioticus probable oxidoreductase" ytygl121c - 99,0,0,0 "null" "hypothetical protein" ytyil050w - 98,0,0,0 "PCL7" "cyclin like protein interacting with PHO85P" ------------------ Rule 795: cechdeeigagasp_gasch1_YP_raffinose_vs_reference_pool_car_2 > 0.68 ss(_1,_2,c),coil_len(_2,gte10),beta_dist(_1,b12.4_19.1),coil_dist(_1,b39.5_45.4),nss(_2,_3,b) = 0 cechdeeigagasp_gasch1_Heat_Shock_000_minutes__hs_2 <= 0.97 cechdeeigagasp_gasch1_Nitrogen_Depletion_4_h <= 0.92 ss(_1,_2,b),ss(_1,_3,a),alpha_len(_3,gte14),beta_dist(_1,b0.0_6.1),nss(_2,_3,a) = 0 ss(_1,_2,c),coil_len(_2,b6_10),alpha_dist(_1,b36.2_47.6),coil_dist(_1,b6.2_39.5),nss(_2,_3,b) = 0 cechdeeigagasp_gasch1_YAP1_overexpression <= 1.19 ss(_1,_2,b),beta_len(_2,gte7),beta_dist(_1,b6.1_12.4),coil_dist(_1,b6.2_39.5) = 0 ss(_1,_2,b),ss(_1,_3,b),beta_len(_2,gte7),nss(_3,_4,a),nss(_4,_2,b) = 0 cechdeeigagasp_derisi_g1 <= 14100 ss(_1,_2,b),ss(_1,_3,a),alpha_len(_3,gte14),coil_dist(_1,b6.2_39.5),nss(_2,_3,a) = 0 -> class 40/16/0/0 "mitochondrion" Evaluation on training data (1657 items): ytycl040w - 1,5,1,0 "GLK1" "aldohexose specific glucokinase" 1,5,7,0 "GLK1" "aldohexose specific glucokinase" 2,1,0,0 "GLK1" "aldohexose specific glucokinase" 40,3,0,0 "GLK1" "aldohexose specific glucokinase" 8,19,0,0 "GLK1" "aldohexose specific glucokinase" ytymr152w 40,16,0,0 "YIM1" "mitochondrial inner membrane protease" 6,7,0,0 "YIM1" "mitochondrial inner membrane protease" ytypl104w 40,16,0,0 "MSD1" "aspartate--tRNA ligase, mitochondrial" 5,10,0,0 "MSD1" "aspartate--tRNA ligase, mitochondrial" ytymr091c - 6,4,0,0 "NPL6" "nuclear protein localization factor" ytypr029c - 6,10,0,0 "APL4" "AP-1 complex subunit, gamma-adaptin, 94 KD" 8,19,0,0 "APL4" "AP-1 complex subunit, gamma-adaptin, 94 KD" ytyfr015c - 1,5,1,0 "GSY1" "UDP glucose--starch glucosyltransferase, isoform 1" 2,19,0,0 "GSY1" "UDP glucose--starch glucosyltransferase, isoform 1" 40,3,0,0 "GSY1" "UDP glucose--starch glucosyltransferase, isoform 1" ytyer072w - 14,1,3,99 "VTC1" "Negative Regulator of Cdc Fourty two (CDC42)" 40,30,0,0 "VTC1" "Negative Regulator of Cdc Fourty two (CDC42)" ytydr530c - 1,3,10,0 "APA2" "ATP adenylyltransferase II" ytydl004w 13,1,1,3 "ATP16" "F1F0-ATPase complex, F1 delta subunit" 2,13,0,0 "ATP16" "F1F0-ATPase complex, F1 delta subunit" 40,16,0,0 "ATP16" "F1F0-ATPase complex, F1 delta subunit" 67,50,22,0 "ATP16" "F1F0-ATPase complex, F1 delta subunit" 8,4,0,0 "ATP16" "F1F0-ATPase complex, F1 delta subunit" ytykl148c 1,5,1,0 "SDH1" "succinate dehydrogenase flavoprotein precursor" 2,10,0,0 "SDH1" "succinate dehydrogenase flavoprotein precursor" 40,16,0,0 "SDH1" "succinate dehydrogenase flavoprotein precursor" ytykr085c 40,16,0,0 "MRPL20" "ribosomal protein YmL20, mitochondrial" 5,1,0,0 "MRPL20" "ribosomal protein YmL20, mitochondrial" ytypr125w - 4,5,5,1 "MRS7" "suppressor of MRS2-1 mutation" ytypl028w - 1,6,1,0 "ERG10" "acetyl-CoA C-acetyltransferase, cytosolic" 40,3,0,0 "ERG10" "acetyl-CoA C-acetyltransferase, cytosolic" ytyor329c - 6,4,0,0 "SCD5" "suppressor of clathrin deficiency" 8,19,0,0 "SCD5" "suppressor of clathrin deficiency" ytyml078w 40,16,0,0 "CPR3" "cyclophilin (peptidylprolyl isomerase), mitochondrial" 6,1,0,0 "CPR3" "cyclophilin (peptidylprolyl isomerase), mitochondrial" ytypr047w 40,16,0,0 "MSF1" "phenylalanine--tRNA ligase alpha chain, mitochondrial" 5,10,0,0 "MSF1" "phenylalanine--tRNA ligase alpha chain, mitochondrial" 6,4,0,0 "MSF1" "phenylalanine--tRNA ligase alpha chain, mitochondrial" ytymr256c 2,13,0,0 "COX7" "cytochrome-c oxidase, subunit VII" 40,16,0,0 "COX7" "cytochrome-c oxidase, subunit VII" 6,10,0,0 "COX7" "cytochrome-c oxidase, subunit VII" ytyfl018c 1,1,1,0 "LPD1" "dihydrolipoamide dehydrogenase precursor" 2,10,0,0 "LPD1" "dihydrolipoamide dehydrogenase precursor" 40,16,0,0 "LPD1" "dihydrolipoamide dehydrogenase precursor" ytynl052w 2,13,0,0 "COX5A" "cytochrome-c oxidase chain V.A precursor" 40,16,0,0 "COX5A" "cytochrome-c oxidase chain V.A precursor" ytydl198c 40,16,0,0 "YHM1" "member of the mitochondrial carrier family (MCF)" 67,7,0,0 "YHM1" "member of the mitochondrial carrier family (MCF)" 8,4,0,0 "YHM1" "member of the mitochondrial carrier family (MCF)" ytyor187w 40,16,0,0 "TUF1" "translation elongation factor TU, mitochondrial" 5,4,0,0 "TUF1" "translation elongation factor TU, mitochondrial" ytylr209c - 1,3,1,0 "PNP1" "strong similarity to purine-nucleoside phosphorylases" ytyfr053c - 1,5,1,0 "HXK1" "hexokinase I" 2,1,0,0 "HXK1" "hexokinase I" 40,3,0,0 "HXK1" "hexokinase I" ytyor286w - 6,4,0,0 "null" "similarity to D.melanogaster heat shock protein 67B2" ytybr052c - 67,28,0,0 "null" "strong similarity to S.pombe brefeldin A resistance protein obr1" ytygr012w - 1,1,1,0 "null" "similarity to E.nidulans cysteine synthase" ytyir021w 4,5,5,1 "MRS1" "involved in mitochondrial RNA splicing of COB mRNA" 40,16,0,0 "MRS1" "involved in mitochondrial RNA splicing of COB mRNA" ytymr199w - 3,3,1,0 "CLN1" "cyclin, G1/S-specific" 40,3,0,0 "CLN1" "cyclin, G1/S-specific" ytyir022w - 40,7,0,0 "SEC11" "signal sequence processing protein" 6,7,0,0 "SEC11" "signal sequence processing protein" ytybr039w 13,1,1,3 "ATP3" "F1F0-ATPase complex, F1 gamma subunit" 2,13,0,0 "ATP3" "F1F0-ATPase complex, F1 gamma subunit" 40,16,0,0 "ATP3" "F1F0-ATPase complex, F1 gamma subunit" 67,50,22,0 "ATP3" "F1F0-ATPase complex, F1 gamma subunit" 8,4,0,0 "ATP3" "F1F0-ATPase complex, F1 gamma subunit" ytymr026c - 40,19,0,0 "PEX12" "required for biogenesis of peroxisomes - peroxin" ytyhr147c 40,16,0,0 "MRPL6" "ribosomal protein of the large subunit, mitochondrial" 5,1,0,0 "MRPL6" "ribosomal protein of the large subunit, mitochondrial" ytykl016c 13,1,1,3 "ATP7" "F1F0-ATPase complex, FO D subunit" 2,13,0,0 "ATP7" "F1F0-ATPase complex, FO D subunit" 40,16,0,0 "ATP7" "F1F0-ATPase complex, FO D subunit" 67,50,22,0 "ATP7" "F1F0-ATPase complex, FO D subunit" 8,4,0,0 "ATP7" "F1F0-ATPase complex, FO D subunit" ytyml120c 2,13,0,0 "NDI1" "NADH-ubiquinone-6 oxidoreductase" 40,16,0,0 "NDI1" "NADH-ubiquinone-6 oxidoreductase" ytyor132w - 6,4,0,0 "VPS17" "vacuolar protein sorting-associated protein" ytylr327c - 6,10,0,0 "null" "strong similarity to STF2P" ytyml121w - 1,4,4,0 "GTR1" "GTP-binding protein" ytynl239w - 11,7,0,0 "LAP3" "member of the GAL regulon" 40,2,0,0 "LAP3" "member of the GAL regulon" 40,3,0,0 "LAP3" "member of the GAL regulon" 6,13,1,0 "LAP3" "member of the GAL regulon" ytynl334c - 11,1,0,0 "SNO2" "strong similarity to hypothetical proteins YFL060c and YMR095c" ytyel024w 2,13,0,0 "RIP1" "ubiquinol--cytochrome-c reductase iron-sulfur protein precursor" 40,16,0,0 "RIP1" "ubiquinol--cytochrome-c reductase iron-sulfur protein precursor" ytyor136w 1,5,1,0 "IDH2" "isocitrate dehydrogenase (NAD+) subunit 2, mitochondrial" 2,10,0,0 "IDH2" "isocitrate dehydrogenase (NAD+) subunit 2, mitochondrial" 4,99,0,0 "IDH2" "isocitrate dehydrogenase (NAD+) subunit 2, mitochondrial" 40,16,0,0 "IDH2" "isocitrate dehydrogenase (NAD+) subunit 2, mitochondrial" ytylr345w - 1,5,4,0 "null" "similarity to PFK26P and other 6-phosphofructo-2-kinases" 2,1,0,0 "null" "similarity to PFK26P and other 6-phosphofructo-2-kinases" ytydr405w 40,16,0,0 "MRP20" "ribosomal protein of the large subunit, mitochondrial" 5,1,0,0 "MRP20" "ribosomal protein of the large subunit, mitochondrial" ytyil109c - 40,7,0,0 "SEC24" "component of COPII coat of ER-Golgi vesicles" 40,8,0,0 "SEC24" "component of COPII coat of ER-Golgi vesicles" 40,9,0,0 "SEC24" "component of COPII coat of ER-Golgi vesicles" 8,7,0,0 "SEC24" "component of COPII coat of ER-Golgi vesicles" ytybr251w 40,16,0,0 "MRPS5" "ribosomal protein S5, mitochondrial" 5,1,0,0 "MRPS5" "ribosomal protein S5, mitochondrial" ytygr132c - 3,1,3,0 "PHB1" "prohibitin, antiproliferative protein" 3,3,1,0 "PHB1" "prohibitin, antiproliferative protein" ytymr145c 2,13,0,0 "NDH1" "mitochondrial cytosolically directed NADH dehydrogenase" 40,16,0,0 "NDH1" "mitochondrial cytosolically directed NADH dehydrogenase" ytylr348c 1,4,7,0 "DIC1" "dicarboxylate carrier protein" 1,5,7,0 "DIC1" "dicarboxylate carrier protein" 40,16,0,0 "DIC1" "dicarboxylate carrier protein" 67,4,7,0 "DIC1" "dicarboxylate carrier protein" 67,7,0,0 "DIC1" "dicarboxylate carrier protein" 8,4,0,0 "DIC1" "dicarboxylate carrier protein" ytynl274c - 1,5,1,0 "null" "similarity to glycerate- and formate-dehydrogenases" ytydr343c - 1,5,7,0 "HXT6" "high-affinity hexose transporter" 40,2,0,0 "HXT6" "high-affinity hexose transporter" 67,7,0,0 "HXT6" "high-affinity hexose transporter" 8,19,0,0 "HXT6" "high-affinity hexose transporter" ytyll013c - 1,3,16,1 "PUF3" "transcript-specific regulator of mRNA degradation" ytykl150w 2,13,0,0 "MCR1" "cytochrome-b5 reductase" 40,16,0,0 "MCR1" "cytochrome-b5 reductase" ytypl031c - 1,4,4,0 "PHO85" "cyclin-dependent protein kinase" 1,5,4,0 "PHO85" "cyclin-dependent protein kinase" 2,19,0,0 "PHO85" "cyclin-dependent protein kinase" 3,3,1,0 "PHO85" "cyclin-dependent protein kinase" 4,5,1,4 "PHO85" "cyclin-dependent protein kinase" 40,10,0,0 "PHO85" "cyclin-dependent protein kinase" ytypl111w - 1,1,10,0 "CAR1" "arginase" 1,2,4,0 "CAR1" "arginase" 40,3,0,0 "CAR1" "arginase" ytyor092w - 30,1,0,0 "ECM3" "involved in cell wall biogenesis and architecture" ytyfl005w - 14,4,3,1 "SEC4" "GTP-binding protein of the ras superfamily" 40,2,0,0 "SEC4" "GTP-binding protein of the ras superfamily" 40,9,0,0 "SEC4" "GTP-binding protein of the ras superfamily" 8,7,0,0 "SEC4" "GTP-binding protein of the ras superfamily" ytymr262w - 3,3,1,0 "null" "similarity to S.pombe scn1 protein" ytypr054w - 10,1,99,0 "SMK1" "sporulation-specific MAP kinase" 14,4,3,5 "SMK1" "sporulation-specific MAP kinase" ytyor178c - 1,5,4,0 "GAC1" "ser/thr phosphoprotein phosphatase 1, regulatory chain" 2,19,0,0 "GAC1" "ser/thr phosphoprotein phosphatase 1, regulatory chain" 40,3,0,0 "GAC1" "ser/thr phosphoprotein phosphatase 1, regulatory chain" ytyll050c - 14,4,3,1 "COF1" "cofilin, actin binding and severing protein" 40,4,0,0 "COF1" "cofilin, actin binding and severing protein" 6,10,0,0 "COF1" "cofilin, actin binding and severing protein" 8,19,0,0 "COF1" "cofilin, actin binding and severing protein" ytyjr045c 11,1,0,0 "SSC1" "mitochondrial heat shock protein 70-related protein" 40,16,0,0 "SSC1" "mitochondrial heat shock protein 70-related protein" 6,1,0,0 "SSC1" "mitochondrial heat shock protein 70-related protein" 8,4,0,0 "SSC1" "mitochondrial heat shock protein 70-related protein" ytydr529c 2,13,0,0 "QCR7" "ubiquinol--cytochrome-c reductase subunit 7" 40,16,0,0 "QCR7" "ubiquinol--cytochrome-c reductase subunit 7" 6,10,0,0 "QCR7" "ubiquinol--cytochrome-c reductase subunit 7" ytymr267w 1,4,1,0 "PPA2" "inorganic pyrophosphatase, mitochondrial" 2,99,0,0 "PPA2" "inorganic pyrophosphatase, mitochondrial" 40,16,0,0 "PPA2" "inorganic pyrophosphatase, mitochondrial" ytykl003c 40,16,0,0 "MRP17" "ribosomal protein of the small subunit, mitochondrial" 5,1,0,0 "MRP17" "ribosomal protein of the small subunit, mitochondrial" ytyjr048w 2,13,0,0 "CYC1" "cytochrome-c isoform 1" 40,16,0,0 "CYC1" "cytochrome-c isoform 1" ytydl210w - 1,2,1,0 "UGA4" "GABA-specific high-affinity permease" 40,2,0,0 "UGA4" "GABA-specific high-affinity permease" 67,10,0,0 "UGA4" "GABA-specific high-affinity permease" 8,19,0,0 "UGA4" "GABA-specific high-affinity permease" ytypl154c - 40,25,0,0 "PEP4" "aspartyl protease" 6,13,4,0 "PEP4" "aspartyl protease" 6,7,0,0 "PEP4" "aspartyl protease" ytyhr057c - 11,1,0,0 "CYP2" "peptidyl-prolyl cis-trans isomerase" 40,7,0,0 "CYP2" "peptidyl-prolyl cis-trans isomerase" 6,1,0,0 "CYP2" "peptidyl-prolyl cis-trans isomerase" ytyjl143w 40,16,0,0 "TIM17" "mitochondrial inner membrane import translocase subunit" 6,4,0,0 "TIM17" "mitochondrial inner membrane import translocase subunit" 67,99,0,0 "TIM17" "mitochondrial inner membrane import translocase subunit" 8,4,0,0 "TIM17" "mitochondrial inner membrane import translocase subunit" ytycr003w 40,16,0,0 "MRPL32" "ribosomal protein YmL32, mitochondrial" 5,1,0,0 "MRPL32" "ribosomal protein YmL32, mitochondrial" ytybr221c 1,5,1,0 "PDB1" "pyruvate dehydrogenase (lipoamide) beta chain precursor" 2,1,0,0 "PDB1" "pyruvate dehydrogenase (lipoamide) beta chain precursor" 40,16,0,0 "PDB1" "pyruvate dehydrogenase (lipoamide) beta chain precursor" ytyor297c - 6,4,0,0 "TIM18" "component of the inner mitochondrial membrane translocation complex" ytypl172c 1,6,7,0 "COX10" "farnesyl transferase" 1,7,1,0 "COX10" "farnesyl transferase" 40,16,0,0 "COX10" "farnesyl transferase" 6,10,0,0 "COX10" "farnesyl transferase" ytyhr154w - 4,5,1,4 "ESC4" "Establishes Silent Chromatin" ytydr232w 1,7,1,0 "HEM1" "5-aminolevulinate synthase" 40,16,0,0 "HEM1" "5-aminolevulinate synthase" ytykr042w - 11,1,0,0 "UTH1" "involved in the aging process" 14,10,0,0 "UTH1" "involved in the aging process" 3,3,1,0 "UTH1" "involved in the aging process" ytydl217c 40,16,0,0 "TIM22" "subunit of the TIM22-complex" 6,4,0,0 "TIM22" "subunit of the TIM22-complex" 67,99,0,0 "TIM22" "subunit of the TIM22-complex" 8,4,0,0 "TIM22" "subunit of the TIM22-complex" ytypr004c 2,13,0,0 "null" "strong similarity to electron transfer flavoproteins alpha chain" 40,16,0,0 "null" "strong similarity to electron transfer flavoproteins alpha chain" ytygl197w - 14,4,3,5 "MDS3" "negative regulator of early meiotic expression" ytypl271w 13,1,1,3 "ATP15" "F1F0-ATPase complex, F1 epsilon subunit" 2,13,0,0 "ATP15" "F1F0-ATPase complex, F1 epsilon subunit" 40,16,0,0 "ATP15" "F1F0-ATPase complex, F1 epsilon subunit" 67,50,22,0 "ATP15" "F1F0-ATPase complex, F1 epsilon subunit" 8,4,0,0 "ATP15" "F1F0-ATPase complex, F1 epsilon subunit" ytymr054w - 13,1,1,3 "STV1" "H+-ATPase V0 domain 102 KD subunit, not vacuolar" 40,3,0,0 "STV1" "H+-ATPase V0 domain 102 KD subunit, not vacuolar" 40,8,0,0 "STV1" "H+-ATPase V0 domain 102 KD subunit, not vacuolar" 67,4,1,2 "STV1" "H+-ATPase V0 domain 102 KD subunit, not vacuolar" 67,50,22,0 "STV1" "H+-ATPase V0 domain 102 KD subunit, not vacuolar" 8,13,0,0 "STV1" "H+-ATPase V0 domain 102 KD subunit, not vacuolar" ytynl169c 1,6,1,0 "PSD1" "phosphatidylserine decarboxylase 1" 40,16,0,0 "PSD1" "phosphatidylserine decarboxylase 1" ytylr259c 11,1,0,0 "HSP60" "heat shock protein - chaperone, mitochondrial" 40,16,0,0 "HSP60" "heat shock protein - chaperone, mitochondrial" 6,1,0,0 "HSP60" "heat shock protein - chaperone, mitochondrial" ytyml054c 1,5,1,0 "CYB2" "lactate dehydrogenase cytochrome b2" 2,13,0,0 "CYB2" "lactate dehydrogenase cytochrome b2" 40,16,0,0 "CYB2" "lactate dehydrogenase cytochrome b2" Training Accuracy: 40/84 (47.62%) Training Frequency class '40/16/0/0': 152/1657 (9.17%) Evaluation on validation data (856 items): ytymr064w - 4,99,0,0 "AEP1" "nuclear control of ATPase messenger RNA expression protein" 5,7,0,0 "AEP1" "nuclear control of ATPase messenger RNA expression protein" ytymr059w - 4,3,3,0 "SEN15" "tRNA splicing endonuclease delta subunit" 40,10,0,0 "SEN15" "tRNA splicing endonuclease delta subunit" ytymr228w 3,1,5,0 "MTF1" "RNA polymerase specific factor, mitochondrial" 4,5,1,1 "MTF1" "RNA polymerase specific factor, mitochondrial" 40,16,0,0 "MTF1" "RNA polymerase specific factor, mitochondrial" ytyor317w - 1,6,1,0 "FAA1" "long-chain-fatty-acid--CoA ligase" 1,6,7,0 "FAA1" "long-chain-fatty-acid--CoA ligase" ytydr178w 1,5,1,0 "SDH4" "succinate dehydrogenase membrane anchor subunit for SDH2P" 2,10,0,0 "SDH4" "succinate dehydrogenase membrane anchor subunit for SDH2P" 2,13,0,0 "SDH4" "succinate dehydrogenase membrane anchor subunit for SDH2P" 40,16,0,0 "SDH4" "succinate dehydrogenase membrane anchor subunit for SDH2P" ytyor158w 40,16,0,0 "PET123" "ribosomal protein, mitochondrial" 5,1,0,0 "PET123" "ribosomal protein, mitochondrial" ytypl019c - 8,13,0,0 "VTC3" "strong similarity to YFL004w, similarity to YJL012c" ytyll009c 13,1,1,1 "COX17" "interacts genetically with SCO1 and SCO2 in cytochrome oxidase assembly" 2,13,0,0 "COX17" "interacts genetically with SCO1 and SCO2 in cytochrome oxidase assembly" 40,16,0,0 "COX17" "interacts genetically with SCO1 and SCO2 in cytochrome oxidase assembly" 40,3,0,0 "COX17" "interacts genetically with SCO1 and SCO2 in cytochrome oxidase assembly" 6,10,0,0 "COX17" "interacts genetically with SCO1 and SCO2 in cytochrome oxidase assembly" ytykl146w - 67,99,0,0 "null" "strong similarity to S.pombe hypothetical protein C3H1.09C" ytylr390w - 30,1,0,0 "ECM19" "involved in cell wall biogenesis and architecture" ytylr043c - 11,7,0,0 "TRX1" "thioredoxin I" 3,3,1,0 "TRX1" "thioredoxin I" 6,7,0,0 "TRX1" "thioredoxin I" ytypl037c - 1,5,4,0 "EGD1" "GAL4 DNA-binding enhancer protein" 4,5,1,4 "EGD1" "GAL4 DNA-binding enhancer protein" 40,10,0,0 "EGD1" "GAL4 DNA-binding enhancer protein" 6,4,0,0 "EGD1" "GAL4 DNA-binding enhancer protein" ytyil162w - 1,5,1,0 "SUC2" "invertase (sucrose hydrolyzing enzyme)" 40,27,0,0 "SUC2" "invertase (sucrose hydrolyzing enzyme)" ytyfr033c 2,13,0,0 "QCR6" "ubiquinol--cytochrome-c reductase 17K protein" 40,16,0,0 "QCR6" "ubiquinol--cytochrome-c reductase 17K protein" ytyor185c - 4,7,0,0 "GSP2" "GTP-binding protein of the RAS superfamily" 40,10,0,0 "GSP2" "GTP-binding protein of the RAS superfamily" 40,3,0,0 "GSP2" "GTP-binding protein of the RAS superfamily" 8,1,0,0 "GSP2" "GTP-binding protein of the RAS superfamily" ytypl118w 40,16,0,0 "MRP51" "mitochondrial ribosomal protein of the small subunit" 5,1,0,0 "MRP51" "mitochondrial ribosomal protein of the small subunit" ytygl068w 40,16,0,0 "null" "strong similarity to Cricetus mitochrondial ribosomal L12 protein" 5,1,0,0 "null" "strong similarity to Cricetus mitochrondial ribosomal L12 protein" ytyjr117w - 14,4,3,3 "STE24" "zinc metallo-protease" 40,7,0,0 "STE24" "zinc metallo-protease" 6,7,0,0 "STE24" "zinc metallo-protease" ytynl134c - 40,3,0,0 "null" "similarity to C.carbonum toxD gene" ytyol011w - 1,6,4,0 "PLB3" "phospholipase B (lysophospholipase)" ytykl176c - 6,4,0,0 "LST4" "protein required for regulated transport of nitrogen-regulated permeases from the Golgi to the plasma membrane" ytylr304c 1,5,1,0 "ACO1" "aconitate hydratase" 2,10,0,0 "ACO1" "aconitate hydratase" 2,22,0,0 "ACO1" "aconitate hydratase" 40,16,0,0 "ACO1" "aconitate hydratase" 40,3,0,0 "ACO1" "aconitate hydratase" ytykr006c 40,16,0,0 "MRPL13" "ribosomal protein YmL13, mitochondrial" 5,1,0,0 "MRPL13" "ribosomal protein YmL13, mitochondrial" ytymr015c - 1,6,1,0 "ERG5" "C-22 sterol desaturase" 11,7,1,0 "ERG5" "C-22 sterol desaturase" 40,7,0,0 "ERG5" "C-22 sterol desaturase" ytyjl221c - 1,5,1,0 "FSP2" "strong similarity to alpha-D-glucosidase" 2,19,0,0 "FSP2" "strong similarity to alpha-D-glucosidase" ytynl137c 40,16,0,0 "NAM9" "ribosomal protein, mitochondrial" 5,1,0,0 "NAM9" "ribosomal protein, mitochondrial" ytyor285w - 6,4,0,0 "null" "similarity to D.melanogaster heat shock protein 67B2" ytygl248w - 1,3,13,0 "PDE1" "low affinity 3',5'-cyclic-nucleotide phosphodiesterase" 40,3,0,0 "PDE1" "low affinity 3',5'-cyclic-nucleotide phosphodiesterase" ytynl312w - 3,1,3,0 "RFA2" "DNA replication factor A, 36 kDa subunit" 40,10,0,0 "RFA2" "DNA replication factor A, 36 kDa subunit" ytynl138w - 10,1,99,0 "SRV2" "adenylate cyclase-associated protein, 70kDa" 14,1,0,0 "SRV2" "adenylate cyclase-associated protein, 70kDa" 14,4,3,1 "SRV2" "adenylate cyclase-associated protein, 70kDa" 40,4,0,0 "SRV2" "adenylate cyclase-associated protein, 70kDa" ytypr166c 40,16,0,0 "MRP2" "ribosomal protein S14" 5,1,0,0 "MRP2" "ribosomal protein S14" ytylr069c 40,16,0,0 "MEF1" "translation elongation factor G, mitochondrial" 5,4,2,0 "MEF1" "translation elongation factor G, mitochondrial" ytypl078c 13,1,1,3 "ATP4" "F1F0-ATPase complex, F0 subunit B" 2,13,0,0 "ATP4" "F1F0-ATPase complex, F0 subunit B" 40,16,0,0 "ATP4" "F1F0-ATPase complex, F0 subunit B" 67,50,22,0 "ATP4" "F1F0-ATPase complex, F0 subunit B" 8,4,0,0 "ATP4" "F1F0-ATPase complex, F0 subunit B" ytymr035w 3,1,5,1 "IMP2" "mitochondrial inner membrane protease subunit" 40,16,0,0 "IMP2" "mitochondrial inner membrane protease subunit" 6,4,0,0 "IMP2" "mitochondrial inner membrane protease subunit" 6,7,0,0 "IMP2" "mitochondrial inner membrane protease subunit" ytyjr077c 1,4,7,0 "MIR1" "phosphate transport protein, mitochondrial (MCF)" 13,1,3,3 "MIR1" "phosphate transport protein, mitochondrial (MCF)" 40,16,0,0 "MIR1" "phosphate transport protein, mitochondrial (MCF)" 67,4,7,0 "MIR1" "phosphate transport protein, mitochondrial (MCF)" 8,4,0,0 "MIR1" "phosphate transport protein, mitochondrial (MCF)" ytynr001c 1,5,1,0 "CIT1" "citrate (si)-synthase, mitochondrial" 2,10,0,0 "CIT1" "citrate (si)-synthase, mitochondrial" 40,16,0,0 "CIT1" "citrate (si)-synthase, mitochondrial" ytyor045w 40,16,0,0 "TOM6" "mitochondrial outer membrane import receptor subunit, 6 kD" 6,4,0,0 "TOM6" "mitochondrial outer membrane import receptor subunit, 6 kD" 67,99,0,0 "TOM6" "mitochondrial outer membrane import receptor subunit, 6 kD" 8,4,0,0 "TOM6" "mitochondrial outer membrane import receptor subunit, 6 kD" ytypr191w 2,13,0,0 "QCR2" "ubiquinol--cytochrome-c reductase 40KD chain II" 40,16,0,0 "QCR2" "ubiquinol--cytochrome-c reductase 40KD chain II" 6,10,0,0 "QCR2" "ubiquinol--cytochrome-c reductase 40KD chain II" ytynl333w - 1,7,1,0 "SNZ2" "putative pyridoxine (vitamin B6) biosynthetic enzyme" 11,1,0,0 "SNZ2" "putative pyridoxine (vitamin B6) biosynthetic enzyme" ytydr148c 1,5,1,0 "KGD2" "2-oxoglutarate dehydrogenase complex E2 component" 2,10,0,0 "KGD2" "2-oxoglutarate dehydrogenase complex E2 component" 40,16,0,0 "KGD2" "2-oxoglutarate dehydrogenase complex E2 component" ytybr234c - 14,1,0,0 "ARC40" "ARP2/3 protein complex subunit, 40 kilodalton" 14,4,3,1 "ARC40" "ARP2/3 protein complex subunit, 40 kilodalton" 40,4,0,0 "ARC40" "ARP2/3 protein complex subunit, 40 kilodalton" ytyer026c 1,6,1,0 "CHO1" "CDP-diacylglycerol serine O-phosphatidyltransferase" 40,16,0,0 "CHO1" "CDP-diacylglycerol serine O-phosphatidyltransferase" 40,7,0,0 "CHO1" "CDP-diacylglycerol serine O-phosphatidyltransferase" 40,99,0,0 "CHO1" "CDP-diacylglycerol serine O-phosphatidyltransferase" ytyor142w - 1,5,1,0 "LSC1" "succinate-CoA ligase alpha subunit" 2,10,0,0 "LSC1" "succinate-CoA ligase alpha subunit" ytyjl180c 40,16,0,0 "ATP12" "F1F0-ATPase complex assembly protein" 6,10,0,0 "ATP12" "F1F0-ATPase complex assembly protein" ytyjl166w 2,13,0,0 "QCR8" "ubiquinol--cytochrome-c reductase chain VIII" 40,16,0,0 "QCR8" "ubiquinol--cytochrome-c reductase chain VIII" ytyll001w 40,16,0,0 "DNM1" "dynamin-related protein" ytyol135c - 4,5,1,4 "MED7" "member of RNA Polymerase II transcriptional regulation mediator complex" 40,10,0,0 "MED7" "member of RNA Polymerase II transcriptional regulation mediator complex" Validation Accuracy: 23/47 (48.94%) Validation Frequency class '40/16/0/0': 78/856 (9.11%) Evaluation on propertest data (1309 items): ytypr024w 40,16,0,0 "YME1" "protease of the SEC18/CDC48/PAS1 family of ATPases (AAA)" 6,10,0,0 "YME1" "protease of the SEC18/CDC48/PAS1 family of ATPases (AAA)" 6,13,99,0 "YME1" "protease of the SEC18/CDC48/PAS1 family of ATPases (AAA)" ytylr356w - 3,3,1,0 "null" "similarity to SCM4 protein" ytylr371w - 1,5,4,0 "ROM2" "GDP/GTP exchange factor for RHO1P" 14,1,3,0 "ROM2" "GDP/GTP exchange factor for RHO1P" 14,4,3,1 "ROM2" "GDP/GTP exchange factor for RHO1P" 14,4,3,3 "ROM2" "GDP/GTP exchange factor for RHO1P" 30,1,0,0 "ROM2" "GDP/GTP exchange factor for RHO1P" 30,4,0,0 "ROM2" "GDP/GTP exchange factor for RHO1P" 62,2,5,0 "ROM2" "GDP/GTP exchange factor for RHO1P" ytycr046c 2,13,0,0 "IMG1" "ribosomal protein, mitochondrial" 40,16,0,0 "IMG1" "ribosomal protein, mitochondrial" 5,1,0,0 "IMG1" "ribosomal protein, mitochondrial" ytynl284c 40,16,0,0 "MRPL10" "ribosomal protein of the large subunit, mitochondrial" 5,1,0,0 "MRPL10" "ribosomal protein of the large subunit, mitochondrial" ytylr438w - 1,1,1,0 "CAR2" "ornithine aminotransferase" 1,2,1,0 "CAR2" "ornithine aminotransferase" 40,3,0,0 "CAR2" "ornithine aminotransferase" ytyil070c 40,16,0,0 "MAM33" "mitochondrial acidic matrix protein" ytylr439w 40,16,0,0 "MRPL4" "ribosomal protein, mitochondrial" 5,1,0,0 "MRPL4" "ribosomal protein, mitochondrial" ytyjr113c 40,16,0,0 "RSM7" "similarity to bacterial, chloroplast and mitochondrial ribosomal protein S7" 5,1,0,0 "RSM7" "similarity to bacterial, chloroplast and mitochondrial ribosomal protein S7" ytyjr019c - 1,6,4,0 "TES1" "thioesterase, peroxisomal" 40,19,0,0 "TES1" "thioesterase, peroxisomal" ytykl067w - 1,3,99,0 "YNK1" "nucleoside diphosphate kinase" 40,3,0,0 "YNK1" "nucleoside diphosphate kinase" ytydr516c - 1,5,1,0 "null" "strong similarity to glucokinase" ytyml091c 4,3,3,0 "RPM2" "ribonuclease P precursor, mitochondrial" 40,16,0,0 "RPM2" "ribonuclease P precursor, mitochondrial" ytylr203c 40,16,0,0 "MSS51" "possibly involved in translational activation of COX1 and COB mRNA" 5,7,0,0 "MSS51" "possibly involved in translational activation of COX1 and COB mRNA" ytyll041c 2,10,0,0 "SDH2" "succinate dehydrogenase iron-sulfur protein subunit" 40,16,0,0 "SDH2" "succinate dehydrogenase iron-sulfur protein subunit" ytylr395c 2,13,0,0 "COX8" "cytochrome-c oxidase chain VIII" 40,16,0,0 "COX8" "cytochrome-c oxidase chain VIII" ytybl030c 1,3,19,0 "PET9" "ADP/ATP carrier protein (MCF)" 40,16,0,0 "PET9" "ADP/ATP carrier protein (MCF)" 67,16,0,0 "PET9" "ADP/ATP carrier protein (MCF)" 8,4,0,0 "PET9" "ADP/ATP carrier protein (MCF)" ytypl128c - 40,10,3,0 "TBF1" "telomere TTAGGG repeat-binding factor 1" ytymr024w 40,16,0,0 "MRPL3" "ribosomal protein of the large subunit, mitochondrial" 5,1,0,0 "MRPL3" "ribosomal protein of the large subunit, mitochondrial" ytyol030w - 40,1,0,0 "null" "strong similarity to glycoprotein GAS1P" ytyor367w - 30,4,0,0 "SCP1" "similarity to mammalian smooth muscle protein SM22 and chicken calponin alpha" ytyer178w 1,5,1,0 "PDA1" "pyruvate dehydrogenase (lipoamide) alpha chain precursor" 2,1,0,0 "PDA1" "pyruvate dehydrogenase (lipoamide) alpha chain precursor" 40,16,0,0 "PDA1" "pyruvate dehydrogenase (lipoamide) alpha chain precursor" ytykr016w - 2,13,0,0 "null" "weak similarity to mysoin heavy chain proteins" ytygr014w - 14,4,3,1 "MSB2" "multicopy suppressor of a CDC24 bud emergence defect" 40,2,0,0 "MSB2" "multicopy suppressor of a CDC24 bud emergence defect" ytygl187c 2,13,0,0 "COX4" "cytochrome-c oxidase chain IV" 40,16,0,0 "COX4" "cytochrome-c oxidase chain IV" ytylr085c - 40,4,0,0 "ARP6" "Actin-related protein" ytynl076w - 1,3,13,0 "MKS1" "pleiotropic regulatory factor" 1,5,4,0 "MKS1" "pleiotropic regulatory factor" 30,1,0,0 "MKS1" "pleiotropic regulatory factor" 4,5,1,4 "MKS1" "pleiotropic regulatory factor" ytybr056w - 1,5,1,0 "null" "similarity to glucan 1,3-beta-glucosidase" ytynl252c 40,16,0,0 "MRPL17" "ribosomal protein of the large subunit (YmL30), mitochondrial" 5,1,0,0 "MRPL17" "ribosomal protein of the large subunit (YmL30), mitochondrial" ytyor038c - 4,5,1,4 "HIR2" "histone transcription regulator" 40,10,0,0 "HIR2" "histone transcription regulator" ytygr287c - 1,5,1,0 "null" "strong similarity to maltase" ytypr011c - 1,3,19,0 "null" "similarity to ADP/ATP carrier proteins and Graves disease carrier protein" 67,16,0,0 "null" "similarity to ADP/ATP carrier proteins and Graves disease carrier protein" 8,4,0,0 "null" "similarity to ADP/ATP carrier proteins and Graves disease carrier protein" ytylr248w - 2,13,0,0 "RCK2" "Ca/calmodulin-dependent ser/thr protein kinase" 3,3,1,0 "RCK2" "Ca/calmodulin-dependent ser/thr protein kinase" 40,3,0,0 "RCK2" "Ca/calmodulin-dependent ser/thr protein kinase" ytydr322w 40,16,0,0 "MRPL35" "ribosomal protein YmL35 of the large subunit, mitochondrial" 5,1,0,0 "MRPL35" "ribosomal protein YmL35 of the large subunit, mitochondrial" ytylr287c-a - 40,3,0,0 "RPS30A" "40S small subunit ribosomal protein" 5,1,0,0 "RPS30A" "40S small subunit ribosomal protein" ytyml109w - 14,4,3,1 "ZDS2" "multicopy suppressor of SIN4" 3,3,1,0 "ZDS2" "multicopy suppressor of SIN4" ytyor230w - 4,99,0,0 "WTM1" "transcriptional modulator" 40,10,0,0 "WTM1" "transcriptional modulator" ytyjl159w - 11,1,0,0 "HSP150" "member of the PIR1P/HSP150P/PIR3P family" 14,4,3,1 "HSP150" "member of the PIR1P/HSP150P/PIR3P family" 40,1,0,0 "HSP150" "member of the PIR1P/HSP150P/PIR3P family" 40,27,0,0 "HSP150" "member of the PIR1P/HSP150P/PIR3P family" ytyjl174w - 1,5,1,0 "KRE9" "cell wall synthesis protein" 14,1,0,0 "KRE9" "cell wall synthesis protein" 14,4,3,1 "KRE9" "cell wall synthesis protein" 14,4,3,3 "KRE9" "cell wall synthesis protein" 40,27,0,0 "KRE9" "cell wall synthesis protein" ytyml048w - 1,5,4,0 "GSF2" "involved in glucose repression" 30,1,0,0 "GSF2" "involved in glucose repression" ytynl006w - 8,7,0,0 "LST8" "required for transport of permeases from the golgi to the plasma membrane" ytykl135c - 40,9,0,0 "APL2" "AP-1 complex subunit, beta1-adaptin, 82 KD" 6,10,0,0 "APL2" "AP-1 complex subunit, beta1-adaptin, 82 KD" 8,19,0,0 "APL2" "AP-1 complex subunit, beta1-adaptin, 82 KD" ytyjl004c - 8,7,0,0 "SYS1" "multi copy suppressor of YPT6" ytydl181w 2,99,0,0 "INH1" "inhibitor of mitochondrial ATPase" 40,16,0,0 "INH1" "inhibitor of mitochondrial ATPase" ytymr243c - 11,7,0,0 "ZRC1" "zinc- and cadmium resistance protein" 13,1,1,1 "ZRC1" "zinc- and cadmium resistance protein" 40,2,0,0 "ZRC1" "zinc- and cadmium resistance protein" 67,4,1,1 "ZRC1" "zinc- and cadmium resistance protein" 8,19,0,0 "ZRC1" "zinc- and cadmium resistance protein" ytyjl006c - 4,5,1,4 "CTK2" "carboxy-terminal domain (CTD) kinase, beta subunit" 40,10,0,0 "CTK2" "carboxy-terminal domain (CTD) kinase, beta subunit" ytylr367w - 40,3,0,0 "RPS22B" "ribosomal protein S15a.e.c12" 5,1,0,0 "RPS22B" "ribosomal protein S15a.e.c12" ytypr037c 40,16,0,0 "ERV2" "similarity to ERV1P and rat ALR protein" ytygl071w - 13,1,1,1 "RCS1" "iron-regulated transcriptional repressor" 4,5,1,4 "RCS1" "iron-regulated transcriptional repressor" 40,10,0,0 "RCS1" "iron-regulated transcriptional repressor" ytyjl197w - 6,13,1,0 "UBP12" "ubiquitin C-terminal hydrolase" ytymr089c 2,13,0,0 "YTA12" "protease of the SEC18/CDC48/PAS1 family of ATPases (AAA)" 40,16,0,0 "YTA12" "protease of the SEC18/CDC48/PAS1 family of ATPases (AAA)" 6,10,0,0 "YTA12" "protease of the SEC18/CDC48/PAS1 family of ATPases (AAA)" 6,13,99,0 "YTA12" "protease of the SEC18/CDC48/PAS1 family of ATPases (AAA)" ytylr038c 2,13,0,0 "COX12" "cytochrome-c oxidase, subunit VIB" 40,16,0,0 "COX12" "cytochrome-c oxidase, subunit VIB" 6,10,0,0 "COX12" "cytochrome-c oxidase, subunit VIB" ytynl045w - 1,6,1,0 "null" "strong similarity to human leukotriene-A4 hydrolase" ytyhr051w 2,13,0,0 "COX6" "cytochrome-c oxidase subunit VI" 40,16,0,0 "COX6" "cytochrome-c oxidase subunit VI" ytyhr005c-a 30,16,0,0 "MRS11" "subunit of the TIM22-complex" 40,16,0,0 "MRS11" "subunit of the TIM22-complex" 6,4,0,0 "MRS11" "subunit of the TIM22-complex" 8,4,0,0 "MRS11" "subunit of the TIM22-complex" ytykl192c 1,6,1,0 "ACP1" "mitochonrial acyl-carrier protein" 40,16,0,0 "ACP1" "mitochonrial acyl-carrier protein" 67,13,0,0 "ACP1" "mitochonrial acyl-carrier protein" ytyjr144w 3,1,5,1 "MGM101" "mitochondrial genome maintenance protein" 40,16,0,0 "MGM101" "mitochondrial genome maintenance protein" ytygr193c 1,5,1,0 "PDX1" "pyruvate dehydrogenase complex protein X" 2,1,0,0 "PDX1" "pyruvate dehydrogenase complex protein X" 40,16,0,0 "PDX1" "pyruvate dehydrogenase complex protein X" ytydl037c - 1,5,1,0 "null" "strong similarity to glucan 1,4-alpha-glucosidase" ytyhr137w - 1,1,4,0 "ARO9" "aromatic amino acid aminotransferase II" ytyor201c 4,1,4,0 "PET56" "rRNA (guanosine-2'-O-)-methyltransferase" 40,16,0,0 "PET56" "rRNA (guanosine-2'-O-)-methyltransferase" ytynl241c - 1,5,1,0 "ZWF1" "glucose-6-phosphate dehydrogenase" 11,1,0,0 "ZWF1" "glucose-6-phosphate dehydrogenase" 11,7,0,0 "ZWF1" "glucose-6-phosphate dehydrogenase" 2,7,0,0 "ZWF1" "glucose-6-phosphate dehydrogenase" 40,3,0,0 "ZWF1" "glucose-6-phosphate dehydrogenase" ytyol105c - 11,1,0,0 "WSC3" "cell wall integrity and stress response component 3" 40,1,0,0 "WSC3" "cell wall integrity and stress response component 3" ytyol108c - 1,6,10,0 "INO4" "basic helix-loop-helix transcription factor" 4,5,1,4 "INO4" "basic helix-loop-helix transcription factor" 40,10,0,0 "INO4" "basic helix-loop-helix transcription factor" ytyjl068c - 1,6,4,0 "null" "strong similarity to human esterase D" ytygr199w - 1,5,1,0 "PMT6" "putative mannosyltransferase" 6,7,0,0 "PMT6" "putative mannosyltransferase" ytybl064c - 11,7,0,0 "null" "strong similarity to thiol-specific antioxidant enzyme" ytyir036c - 1,5,1,0 "null" "similarity to E.coli fabD" ytypr005c - 11,1,0,0 "HAL1" "salt-induced protein" 40,3,0,0 "HAL1" "salt-induced protein" ytymr055c - 3,3,1,3 "BUB2" "cell cycle arrest protein" ytykl043w - 14,4,3,1 "PHD1" "transcription factor" 4,5,1,4 "PHD1" "transcription factor" 40,10,0,0 "PHD1" "transcription factor" ytykl109w - 4,5,1,4 "HAP4" "CCAAT-binding factor subunit" 40,10,0,0 "HAP4" "CCAAT-binding factor subunit" ytymr150c 40,16,0,0 "IMP1" "protease, mitochondrial" 6,4,0,0 "IMP1" "protease, mitochondrial" 6,7,0,0 "IMP1" "protease, mitochondrial" ytylr258w - 1,5,1,0 "GSY2" "UDP-glucose--starch glucosyltransferase, isoform 2" 1,5,4,0 "GSY2" "UDP-glucose--starch glucosyltransferase, isoform 2" 2,19,0,0 "GSY2" "UDP-glucose--starch glucosyltransferase, isoform 2" 40,3,0,0 "GSY2" "UDP-glucose--starch glucosyltransferase, isoform 2" ytymr056c 1,3,19,0 "AAC1" "ADP/ATP carrier protein (MCF)" 40,16,0,0 "AAC1" "ADP/ATP carrier protein (MCF)" 67,16,0,0 "AAC1" "ADP/ATP carrier protein (MCF)" 8,4,0,0 "AAC1" "ADP/ATP carrier protein (MCF)" Propertest Accuracy: 28/75 (37.33%) Propertest Frequency class '40/16/0/0': 136/1309 (10.39%) New (unknown) data (856 items): ytyol129w - 99,0,0,0 "null" "similarity to hypothetical S. pombe protein" ytyor147w - 99,0,0,0 "null" "similarity to YHR194w" ytykr065c - 99,0,0,0 "null" "similarity to hypothetical protein S. pombe" ytylr023c - 99,0,0,0 "null" "similarity to S.pombe hypothetical protein SPAC30D11.11" ytycl042w - 99,0,0,0 "null" "questionable ORF" ytypr040w - 99,0,0,0 "SDF1" "similarity to C.elegans C02C2.6 protein" ytymr315w - 99,0,0,0 "null" "similarity to hypothetical S. pombe protein" ytypl024w - 98,0,0,0 "NCE4" "negative regulator of CTS1 expression" ytymr157c - 99,0,0,0 "null" "hypothetical protein" ytylr294c - 99,0,0,0 "null" "questionable ORF" ytygl129c - 98,0,0,0 "RSM23" "similarity to S.pombe hypothetical protein SPBC29A3.15C - putative mitochondrial function" ytymr158w - 99,0,0,0 "null" "weak similarity to E.coli ribosomal S8 protein" ytybl010c - 99,0,0,0 "null" "hypothetical protein" ytygr243w - 99,0,0,0 "null" "strong similarity to hypothetical protein YHR162w" ytyil157c - 99,0,0,0 "null" "weak similarity to PIR:T39578 hypothetical protein SPBC16E9.03c S. pombe" ytygl069c - 99,0,0,0 "null" "questionable ORF" ytypr148c - 99,0,0,0 "null" "weak similarity to hypothetical protein S. pombe" ytygr010w - 99,0,0,0 "null" "strong similarity to hypothetical protein YLR328w" ytyor289w - 99,0,0,0 "null" "similarity to C.elegans hypothetical protein" ytybr230c - 99,0,0,0 "null" "hypothetical protein" ytyor215c - 99,0,0,0 "null" "similarity to M.xanthus hypothetical protein" ytynl176c - 99,0,0,0 "null" "weak similarity to HKR1P" ytygl037c - 99,0,0,0 "PNC1" "similarity to PIR:B70386 pyrazinamidase/nicotinamidase - Aquifex aeolicus" ytyol071w - 99,0,0,0 "null" "similarity to hypothetical S. pombe protein" ytynl100w - 99,0,0,0 "null" "hypothetical protein" ytyor155c - 99,0,0,0 "null" "similarity to 5'-flanking region of the Pichia MOX gene" ytynr025c - 99,0,0,0 "null" "questionable ORF" ytygr219w - 99,0,0,0 "null" "questionable ORF" ytynl200c - 99,0,0,0 "null" "strong similarity to human TGR-CL10C" ytyor255w - 99,0,0,0 "null" "hypothetical protein" ytyll019c - 98,0,0,0 "KNS1" "ser/thr protein kinase" ytygr250c - 99,0,0,0 "null" "weak similarity to human cleavage stimulation factor 64K chain" ytylr467w - 99,0,0,0 "YRF1-5" "strong similarity to subtelomeric encoded proteins" ytynl208w - 99,0,0,0 "null" "weak similarity to Colletotrichum gloeosporioides nitrogen starvation-induced glutamine rich protein" ytyor197w - 99,0,0,0 "null" "strong similarity to hypothetical protein SPCC1840.04 S. pombe" ytynl144c - 99,0,0,0 "null" "similarity to YHR131c" ytyjr080c - 99,0,0,0 "null" "hypothetical protein" ytypr158w - 99,0,0,0 "null" "similarity to YGR142w" ytygr021w - 99,0,0,0 "null" "similarity to M.leprae yfcA protein" ytyjl066c - 99,0,0,0 "MPM1" "hypothetical protein" ytylr177w - 99,0,0,0 "null" "similarity to suppressor protein Psp5p" ytypl004c - 99,0,0,0 "null" "strong similarity to YGR086c" ytynl184c - 99,0,0,0 "null" "questionable ORF" ytymr136w - 99,0,0,0 "GAT2" "weak similarity to YIR013c and YLR013w" ytyil135c - 99,0,0,0 "null" "similarity to Ymk1p" ytyor324c - 99,0,0,0 "null" "similarity to YAL028w" ytyor165w - 98,0,0,0 "null" "similarity to E.histolytica surface lectin" ytyml090w - 99,0,0,0 "null" "hypothetical protein" ytypr126c - 99,0,0,0 "null" "questionable ORF" ytykl069w - 99,0,0,0 "null" "strong similarity to hypothetical E.coli protein b1832" ytypr127w - 99,0,0,0 "null" "similarity to C-term. of N.tabacum auxin-induced protein" ytyhr121w - 99,0,0,0 "null" "weak similarity to C.elegans hypothetical protein" ytypr128c - 99,0,0,0 "ANT1" "peroxisomal ATP carrier" ytynl051w - 99,0,0,0 "COD4" "weak similarity to hypothetical protein Drosophila melanogaster" ytygr165w - 99,0,0,0 "null" "similarity to PIR:T39444 hypothetical protein SPBC14C8.16c S. pombe" ytypl207w - 99,0,0,0 "null" "similarity to hypthetical proteins from A. fulgidus, M. thermoautotrophicum and M. jannaschii" ytygl085w - 99,0,0,0 "null" "weak similarity to Staphylococcus aureus nuclease (SNase)" ytykl169c - 99,0,0,0 "null" "questionable ORF" ytyol114c - 99,0,0,0 "null" "similarity to human DS-1 protein" ytypl246c - 99,0,0,0 "null" "weak similarity to mouse proteinase activated receptor 2" ytyor135c - 99,0,0,0 "null" "questionable ORF" ytymr206w - 99,0,0,0 "null" "weak similarity to hypothetical protein YNR014w" ytydr247w - 99,0,0,0 "null" "strong similarity to SKS1P" ytykl137w - 99,0,0,0 "null" "weak similarity to hypothetical protein F1N13_200 - A. thaliana" ytypr038w - 99,0,0,0 "null" "questionable ORF" ytynl122c - 99,0,0,0 "null" "hypothetical protein" ytymr184w - 99,0,0,0 "null" "hypothetical protein" ytygr001c - 99,0,0,0 "null" "similarity to C.elegans hypothetical M142.5 protein" ytyer182w - 99,0,0,0 "null" "similarity to hypothetical protein SPAC3A12.08 - S. pombe" ytyhr136c - 98,0,0,0 "SPL2" "suppressor of PLC1-delta" ytybl108w - 99,0,0,0 "null" "strong similarity to subtelomeric encoded proteins" ytyhr139c-a - 99,0,0,0 "null" "hypothetical protein" ytypr172w - 99,0,0,0 "null" "strong similarity to YLR456w" ytylr156w - 99,0,0,0 "null" "identical to hypothetical proteins YLR161w and YLR159w" ytyor042w - 99,0,0,0 "null" "weak similarity to YDR273w" ytydl133w - 99,0,0,0 "null" "hypothetical protein" ytypl159c - 99,0,0,0 "null" "weak similarity to YPR151c" ytymr210w - 99,0,0,0 "null" "similarity to P.glauca late embryogenesis abundant protein and YBR177c and YPL095c" ytymr316c-b - 99,0,0,0 "null" "questionable ORF" ytylr350w - 99,0,0,0 "null" "strong similarity to YGR038w" ytygl199c - 99,0,0,0 "null" "questionable ORF" ytypl191c - 99,0,0,0 "null" "strong similarity to YGL082w" ytypr100w - 99,0,0,0 "null" "weak similarity to C.elegans hypothetical protein CEC25A1" ytylr193c - 98,0,0,0 "null" "similarity to G.gallus px19 and MSF1P" ------------------