Rule 1103: eval(_1,_2,gte1.1),classification(_2,klebsiella) = 0 eval(_1,_2,b0.0_1.0e-8),classification(_2,desulfurococcales) = 1 eval(_1,_2,b0.0_1.0e-8),sq_len(_2,b16_344),classification(_2,cyprinidae) = 1 -> class 6/0/0/0 "PROTEIN FATE (folding, modification, destination)" Evaluation on training data (1681 items): ytyfr050c 40,10,0,0 "PRE4" "20S proteasome subunit(beta7)" 40,7,0,0 "PRE4" "20S proteasome subunit(beta7)" 6,13,1,0 "PRE4" "20S proteasome subunit(beta7)" ytyol038w 40,10,0,0 "PRE6" "20S proteasome subunit (alpha4)" 40,7,0,0 "PRE6" "20S proteasome subunit (alpha4)" 6,13,1,0 "PRE6" "20S proteasome subunit (alpha4)" ytyjl001w 11,99,0,0 "PRE3" "20S proteasome subunit (beta1)" 14,4,3,5 "PRE3" "20S proteasome subunit (beta1)" 40,10,0,0 "PRE3" "20S proteasome subunit (beta1)" 40,7,0,0 "PRE3" "20S proteasome subunit (beta1)" 6,13,1,0 "PRE3" "20S proteasome subunit (beta1)" ytygr214w 14,4,3,1 "RPS0A" "40S ribosomal protein p40 homolog A" 40,3,0,0 "RPS0A" "40S ribosomal protein p40 homolog A" 5,1,0,0 "RPS0A" "40S ribosomal protein p40 homolog A" 6,10,0,0 "RPS0A" "40S ribosomal protein p40 homolog A" ytygr135w 40,10,0,0 "PRE9" "20S proteasome subunit Y13 (alpha3)" 40,7,0,0 "PRE9" "20S proteasome subunit Y13 (alpha3)" 6,13,1,0 "PRE9" "20S proteasome subunit Y13 (alpha3)" ytyor157c 40,10,0,0 "PUP1" "20S proteasome subunit (beta2)" 40,7,0,0 "PUP1" "20S proteasome subunit (beta2)" 6,13,1,0 "PUP1" "20S proteasome subunit (beta2)" ytykl154w 40,7,0,0 "SRP102" "signal recognition particle receptor, beta chain" 6,4,0,0 "SRP102" "signal recognition particle receptor, beta chain" ytyer012w 11,99,0,0 "PRE1" "20S proteasome subunit C11(beta4)" 14,4,3,5 "PRE1" "20S proteasome subunit C11(beta4)" 40,10,0,0 "PRE1" "20S proteasome subunit C11(beta4)" 40,7,0,0 "PRE1" "20S proteasome subunit C11(beta4)" 6,13,1,0 "PRE1" "20S proteasome subunit C11(beta4)" Training Accuracy: 8/8 (100.00%) Training Frequency class '6/0/0/0': 259/1681 (15.41%) Evaluation on validation data (875 items): ytypr103w 14,4,3,5 "PRE2" "20S proteasome subunit (beta5)" 3,3,1,0 "PRE2" "20S proteasome subunit (beta5)" 3,3,2,0 "PRE2" "20S proteasome subunit (beta5)" 40,10,0,0 "PRE2" "20S proteasome subunit (beta5)" 40,7,0,0 "PRE2" "20S proteasome subunit (beta5)" 6,13,1,0 "PRE2" "20S proteasome subunit (beta5)" ytymr314w 40,10,0,0 "PRE5" "20S proteasome subunit(alpha6)" 40,7,0,0 "PRE5" "20S proteasome subunit(alpha6)" 6,13,1,0 "PRE5" "20S proteasome subunit(alpha6)" ytyor362c 40,10,0,0 "PRE10" "20S proteasome subunit C1 (alpha7)" 40,4,0,0 "PRE10" "20S proteasome subunit C1 (alpha7)" 6,13,1,0 "PRE10" "20S proteasome subunit C1 (alpha7)" ytybl041w 40,10,0,0 "PRE7" "20S proteasome subunit(beta6)" 40,7,0,0 "PRE7" "20S proteasome subunit(beta6)" 6,13,1,0 "PRE7" "20S proteasome subunit(beta6)" Validation Accuracy: 4/4 (100.00%) Validation Frequency class '6/0/0/0': 136/875 (15.54%) Evaluation on propertest data (1321 items): ytyml092c 40,10,0,0 "PRE8" "20S proteasome subunit Y7 (alpha2)" 40,7,0,0 "PRE8" "20S proteasome subunit Y7 (alpha2)" 6,13,1,0 "PRE8" "20S proteasome subunit Y7 (alpha2)" ytyer094c 40,10,0,0 "PUP3" "20S proteasome subunit (beta3)" 40,7,0,0 "PUP3" "20S proteasome subunit (beta3)" 6,13,1,0 "PUP3" "20S proteasome subunit (beta3)" ytygl011c 40,10,0,0 "SCL1" "20S proteasome subunit YC7ALPHA/Y8 (alpha1)" 40,7,0,0 "SCL1" "20S proteasome subunit YC7ALPHA/Y8 (alpha1)" 6,13,1,0 "SCL1" "20S proteasome subunit YC7ALPHA/Y8 (alpha1)" ytyor094w 6,10,0,0 "ARF3" "ADP-ribosylation factor 3" 8,7,0,0 "ARF3" "ADP-ribosylation factor 3" Propertest Accuracy: 4/4 (100.00%) Propertest Frequency class '6/0/0/0': 187/1321 (14.16%) New (unknown) data (875 items): ------------------ Rule 914: eval(_1,_2,gte1.1),classification(_2,brassicales) = 0 eval(_1,_2,b0.0_1.0e-8),db_ref(_2,maizedb) = 1 eval(_1,_2,b4.5e-2_1.1),mol_wt(_2,b1485_38502),db_ref(_2,prints) = 0 eval(_1,_2,b4.0e-4_4.5e-2),sq_len(_2,b16_344),classification(_2,ascomycota) = 0 eval(_1,_2,b0.0_1.0e-8),keyword(_2,plasmid),db_ref(_2,hssp) = 1 eval(_1,_2,b0.0_1.0e-8),sq_len(_2,b344_483),classification(_2,echinoida) = 0 -> class 2/0/0/0 "ENERGY" Evaluation on training data (1681 items): ytymr170c 2,99,0,0 "ALD2" "aldehyde dehydrogenase 2 (NAD+)" ytyer073w 2,16,0,0 "ALD5" "aldehyde dehydrogenase (NAD+), mitochondrial" 40,16,0,0 "ALD5" "aldehyde dehydrogenase (NAD+), mitochondrial" ytypl061w 2,16,0,0 "ALD6" "aldehyde dehydrogenase, cytosolic" 40,3,0,0 "ALD6" "aldehyde dehydrogenase, cytosolic" ytygr087c 1,5,1,0 "PDC6" "pyruvate decarboxylase 3" 2,16,0,0 "PDC6" "pyruvate decarboxylase 3" 40,3,0,0 "PDC6" "pyruvate decarboxylase 3" ytybr117c 1,1,1,0 "TKL2" "transketolase 2" 1,5,1,0 "TKL2" "transketolase 2" 2,7,0,0 "TKL2" "transketolase 2" 40,3,0,0 "TKL2" "transketolase 2" ytyml125c 2,13,0,0 "null" "strong similarity to cytochrome-b5- and nitrate reductases" ytyil043c 2,13,0,0 "CBR1" "cytochrome-b5 reductase" 40,16,0,0 "CBR1" "cytochrome-b5 reductase" ytykl150w 2,13,0,0 "MCR1" "cytochrome-b5 reductase" 40,16,0,0 "MCR1" "cytochrome-b5 reductase" ytymr323w 1,5,1,0 "null" "strong similarity to phosphopyruvate hydratases" 2,1,0,0 "null" "strong similarity to phosphopyruvate hydratases" ytymr169c 2,16,0,0 "ALD3" "stress inducible aldehyde dehydrogenase" ytydr380w 1,5,1,0 "ARO10" "similarity to PDC6P, THI3P and to pyruvate decarboxylases" 2,16,0,0 "ARO10" "similarity to PDC6P, THI3P and to pyruvate decarboxylases" ytylr134w 1,5,1,0 "PDC5" "pyruvate decarboxylase, isozyme 2" 2,16,0,0 "PDC5" "pyruvate decarboxylase, isozyme 2" 40,3,0,0 "PDC5" "pyruvate decarboxylase, isozyme 2" ytygr254w 1,5,1,0 "ENO1" "enolase I (2-phosphoglycerate dehydratase)" 2,1,0,0 "ENO1" "enolase I (2-phosphoglycerate dehydratase)" 40,3,0,0 "ENO1" "enolase I (2-phosphoglycerate dehydratase)" ytyhr039c 2,16,0,0 "MSC7" "similarity to aldehyde dehydrogenases" ytyor393w 1,5,1,0 "ERR1" "enolase related protein" 2,1,0,0 "ERR1" "enolase related protein" ytyhr174w 1,5,1,0 "ENO2" "enolase II (2-phosphoglycerate dehydratase)" 2,1,0,0 "ENO2" "enolase II (2-phosphoglycerate dehydratase)" 40,3,0,0 "ENO2" "enolase II (2-phosphoglycerate dehydratase)" Training Accuracy: 16/16 (100.00%) Training Frequency class '2/0/0/0': 119/1681 (7.08%) Evaluation on validation data (875 items): ytyil125w 1,5,1,0 "KGD1" "2-oxoglutarate dehydrogenase complex E1 component" 2,10,0,0 "KGD1" "2-oxoglutarate dehydrogenase complex E1 component" 40,16,0,0 "KGD1" "2-oxoglutarate dehydrogenase complex E1 component" ytyor323c - 1,1,1,0 "PRO2" "gamma-glutamyl phosphate reductase" ytyol165c 1,5,1,0 "AAD15" "putative aryl alcohol dehydrogenase" 2,16,0,0 "AAD15" "putative aryl alcohol dehydrogenase" ytybr006w - 1,1,10,0 "UGA2" "succinate semialdehyde dehydrogenase" ytylr044c 1,5,1,0 "PDC1" "pyruvate decarboxylase, isozyme 1" 2,13,0,0 "PDC1" "pyruvate decarboxylase, isozyme 1" 2,16,0,0 "PDC1" "pyruvate decarboxylase, isozyme 1" 40,3,0,0 "PDC1" "pyruvate decarboxylase, isozyme 1" ytyml087c 2,13,0,0 "null" "strong similarity to YML125c, similarity to cytochrome-b5- and nitrate reductases" ytyhr037w - 1,1,1,0 "PUT2" "1-pyrroline-5-carboxylate dehydrogenase" 40,16,0,0 "PUT2" "1-pyrroline-5-carboxylate dehydrogenase" ytymr015c - 1,6,1,0 "ERG5" "C-22 sterol desaturase" 11,7,1,0 "ERG5" "C-22 sterol desaturase" 40,7,0,0 "ERG5" "C-22 sterol desaturase" ytyfl056c 1,5,1,0 "AAD6" "strong similarity to aryl-alcohol dehydrogenases" 2,16,0,0 "AAD6" "strong similarity to aryl-alcohol dehydrogenases" ytyfl057c 1,5,1,0 "null" "strong similarity to aryl-alcohol dehydrogenases" 2,16,0,0 "null" "strong similarity to aryl-alcohol dehydrogenases" ytydr402c - 11,7,1,0 "DIT2" "cytochrome P450 56" 14,4,3,5 "DIT2" "cytochrome P450 56" 30,1,0,0 "DIT2" "cytochrome P450 56" ytybr149w - 1,5,1,0 "ARA1" "D-arabinose dehydrogenase, large subunit" ytypl281c 1,5,1,0 "ERR2" "enolase related protein" 2,1,0,0 "ERR2" "enolase related protein" Validation Accuracy: 7/13 (53.85%) Validation Frequency class '2/0/0/0': 53/875 (6.06%) Evaluation on propertest data (1321 items): ytyhr007c - 1,6,1,0 "ERG11" "cytochrome P450 lanosterol 14a-demethylase" 11,7,1,0 "ERG11" "cytochrome P450 lanosterol 14a-demethylase" 40,7,0,0 "ERG11" "cytochrome P450 lanosterol 14a-demethylase" ytyjl218w - 1,5,1,0 "null" "strong similarity to E.coli galactoside O-acetyltransferase" ytypr074c 1,1,1,0 "TKL1" "transketolase 1" 1,5,1,0 "TKL1" "transketolase 1" 2,7,0,0 "TKL1" "transketolase 1" 40,3,0,0 "TKL1" "transketolase 1" ytyor120w - 1,5,1,0 "GCY1" "galactose-induced protein of aldo/keto reductase family" 40,3,0,0 "GCY1" "galactose-induced protein of aldo/keto reductase family" ytydl055c - 1,5,1,0 "PSA1" "mannose-1-phosphate guanyltransferase" 30,1,0,0 "PSA1" "mannose-1-phosphate guanyltransferase" Propertest Accuracy: 1/5 (20.00%) Propertest Frequency class '2/0/0/0': 75/1321 (5.68%) New (unknown) data (875 items): ytypl252c - 98,0,0,0 "YAH1" "similarity to adrenodoxin and ferrodoxin" ------------------ Rule 851: eval(_1,_2,b0.0_1.0e-8),classification(_2,desulfurococcales) = 0 eval(_1,_2,gte1.1),classification(_2,mucoraceae),keyword(_2,transmembrane) = 1 eval(_1,_2,b4.5e-2_1.1),classification(_2,enterococcaceae),db_ref(_2,pir) = 1 eval(_1,_2,b0.0_1.0e-8),keyword(_2,inner_membrane),db_ref(_2,prints) = 0 -> class 29/0/0/0 "TRANSPOSABLE ELEMENTS, VIRAL AND PLASMID PROTEINS" Evaluation on training data (1681 items): ytty1a_or 29,0,0,0 "TY1A" "TY1A protein" ytty1a_pl 29,0,0,0 "TY1A" "TY1A protein" ytty1a_dr4 29,0,0,0 "TY1A" "TY1A protein" ytty1a_dr5 29,0,0,0 "TY1A" "TY1A protein" ytty1b_dr5 29,0,0,0 "TY1B" "TY1B protein" ytty1b_a 29,0,0,0 "TY1B" "Ty1B protein" ytty1b_nl2 29,0,0,0 "TY1B" "TY1B protein" ytty1a_er2 29,0,0,0 "TY1A" "TY1A protein" ytty1a_pr2 29,0,0,0 "TY1A" "TY1A protein" ytty1a_pr3 29,0,0,0 "TY1A" "TY1A protein" ytty2b_b 29,0,0,0 "TY2B" "TY2B protein" ytty2b_n 29,0,0,0 "TY2B" "TY2B protein" ytty1a_gr2 29,0,0,0 "TY1A" "TY1A protein" ytty1b_gr3 29,0,0,0 "TY1B" "TY1B protein" ytty4b_p 29,0,0,0 "TY4B" "probably inactive TY4B" Training Accuracy: 15/15 (100.00%) Training Frequency class '29/0/0/0': 51/1681 (3.03%) Evaluation on validation data (875 items): ytty1a_lr1 29,0,0,0 "TY1A" "TY1A protein" ytty1a_lr2 29,0,0,0 "TY1A" "TY1A protein" ytty1a_mr2 29,0,0,0 "TY1A" "TY1A protein" ytty1a_dr6 29,0,0,0 "TY1A" "TY1A protein" ytyor337w - 4,5,1,4 "TEA1" "TY1 enhancer activator" 40,10,0,0 "TEA1" "TY1 enhancer activator" ytyjr127c - 4,5,99,0 "ZMS1" "transcription factor with similarity to regulatory protein ARD1P" ytty1a_gr3 29,0,0,0 "TY1A" "TY1A protein" ytydr379w - 10,1,99,0 "RGA2" "similarity to Dbm1p and to the rat GAP-associated protein p190" ytty1b_er1 29,0,0,0 "TY1B" "TY1B protein" Validation Accuracy: 6/9 (66.67%) Validation Frequency class '29/0/0/0': 29/875 (3.31%) Evaluation on propertest data (1321 items): ytypr025c - 3,1,5,1 "CCL1" "TFIIH subunit (transcription initiation factor), cyclin C component" 3,3,1,0 "CCL1" "TFIIH subunit (transcription initiation factor), cyclin C component" 4,5,1,1 "CCL1" "TFIIH subunit (transcription initiation factor), cyclin C component" 40,10,0,0 "CCL1" "TFIIH subunit (transcription initiation factor), cyclin C component" ytylr371w - 1,5,4,0 "ROM2" "GDP/GTP exchange factor for RHO1P" 14,1,3,0 "ROM2" "GDP/GTP exchange factor for RHO1P" 14,4,3,1 "ROM2" "GDP/GTP exchange factor for RHO1P" 14,4,3,3 "ROM2" "GDP/GTP exchange factor for RHO1P" 30,1,0,0 "ROM2" "GDP/GTP exchange factor for RHO1P" 30,4,0,0 "ROM2" "GDP/GTP exchange factor for RHO1P" 62,2,5,0 "ROM2" "GDP/GTP exchange factor for RHO1P" ytyhr108w - 8,7,0,0 "GGA2" "Arf-binding protein" ytty1b_dr1 29,0,0,0 "TY1B" "TY1B protein" ytyil048w - 67,28,0,0 "NEO1" "ATPase whose overproduction confers neomycin resistance" 67,50,22,0 "NEO1" "ATPase whose overproduction confers neomycin resistance" ytty1a_er1 29,0,0,0 "TY1A" "TY1A protein" ytyjl041w - 4,3,99,0 "NSP1" "nuclear pore protein" 40,10,0,0 "NSP1" "nuclear pore protein" 40,5,0,0 "NSP1" "nuclear pore protein" 8,1,0,0 "NSP1" "nuclear pore protein" ytty1b_pr1 29,0,0,0 "TY1B" "TY1B protein" ytyor109w - 1,6,99,0 "INP53" "phosphatidylinositol phosphate phosphatase" 30,1,0,0 "INP53" "phosphatidylinositol phosphate phosphatase" Propertest Accuracy: 3/9 (33.33%) Propertest Frequency class '29/0/0/0': 35/1321 (2.65%) New (unknown) data (875 items): ytyfl010c - 99,0,0,0 "null" "questionable ORF" ytyhr080c - 99,0,0,0 "null" "similarity to hypothetical protein YDR326c, YFL042c and YLR072w" ytygr250c - 99,0,0,0 "null" "weak similarity to human cleavage stimulation factor 64K chain" ytydl189w - 99,0,0,0 "null" "weak similarity to 'KIAA1002'; H. sapiens" ------------------ Rule 1020: eval(_1,_2,b0.0_1.0e-8),classification(_2,sphingomonas_group) = 0 eval(_1,_2,b0.0_1.0e-8),classification(_2,desulfurococcales) = 0 eval(_1,_2,b4.0e-4_4.5e-2),classification(_2,dsdna_viruses_no_rna_stage),keyword(_2,repeat) = 1 eval(_1,_2,b0.0_1.0e-8),sq_len(_2,b16_344),classification(_2,streptococcaceae) = 1 -> class 29/0/0/0 "TRANSPOSABLE ELEMENTS, VIRAL AND PLASMID PROTEINS" Evaluation on training data (1681 items): ytty1b_ml2 29,0,0,0 "TY1B" "TY1B protein" ytty1b_pl 29,0,0,0 "TY1B" "TY1B protein" ytty2b_gr2 29,0,0,0 "TY2B" "TY2B protein" ytty1b_mr1 29,0,0,0 "TY1B" "TY1B protein" ytty1b_dr5 29,0,0,0 "TY1B" "TY1B protein" ytty1b_dr6 29,0,0,0 "TY1B" "TY1B protein" ytty2b_dr2 29,0,0,0 "TY2B" "TY2B protein" ytty1b_a 29,0,0,0 "TY1B" "Ty1B protein" ytty1b_nl2 29,0,0,0 "TY1B" "TY1B protein" ytty1b_lr1 29,0,0,0 "TY1B" "TY1B protein" ytty1b_lr2 29,0,0,0 "TY1B" "TY1B protein" ytty2b_n 29,0,0,0 "TY2B" "TY2B protein" ytty1b_pr3 29,0,0,0 "TY1B" "TY1B protein" ytty1b_br 29,0,0,0 "TY1B" "TY1B protein" ytty1b_gr1 29,0,0,0 "TY1B" "TY1B protein" Training Accuracy: 15/15 (100.00%) Training Frequency class '29/0/0/0': 51/1681 (3.03%) Evaluation on validation data (875 items): ytty1b_ol 29,0,0,0 "TY1B" "TY1B protein" ytty1b_lr3 29,0,0,0 "TY1B" "TY1B protein" ytypl119c - 4,5,5,1 "DBP1" "ATP-dependent RNA helicase" 40,10,0,0 "DBP1" "ATP-dependent RNA helicase" ytydr545w - 3,1,5,0 "YRF1-1" "Y'-helicase protein 1" ytty1b_dr3 29,0,0,0 "TY1B" "TY1B protein" ytty1b_er1 29,0,0,0 "TY1B" "TY1B protein" ytycr011c - 40,2,0,0 "ADP1" "ATP-dependent permease" 67,50,25,0 "ADP1" "ATP-dependent permease" ytty1b_bl 29,0,0,0 "TY1B" "TY1B protein" Validation Accuracy: 5/8 (62.50%) Validation Frequency class '29/0/0/0': 29/875 (3.31%) Evaluation on propertest data (1321 items): ytty1b_dr1 29,0,0,0 "TY1B" "TY1B protein" ytty1b_dr4 29,0,0,0 "TY1B" "TY1B protein" ytyor054c - 11,1,0,0 "null" "similarity to SIS2P protein and C.tropicalis hal3 protein" ytymr207c - 1,6,1,0 "HFA1" "strong similarity to acetyl-CoA carboxylase" 1,6,10,0 "HFA1" "strong similarity to acetyl-CoA carboxylase" ytybr237w - 4,5,5,1 "PRP5" "pre-mRNA processing RNA-helicase" 40,10,0,0 "PRP5" "pre-mRNA processing RNA-helicase" 6,10,0,0 "PRP5" "pre-mRNA processing RNA-helicase" ytyor232w - 40,16,0,0 "MGE1" "heat shock protein - chaperone" 6,1,0,0 "MGE1" "heat shock protein - chaperone" 8,4,0,0 "MGE1" "heat shock protein - chaperone" ytty2b_dr3 29,0,0,0 "TY2B" "TY2B protein" ytty1b_jr1 29,0,0,0 "TY1B" "TY1B protein" ytydr110w - 3,1,3,0 "FOB1" "DNA replication fork blocking protein" 3,1,5,0 "FOB1" "DNA replication fork blocking protein" 40,3,0,0 "FOB1" "DNA replication fork blocking protein" ytty1b_nl1 29,0,0,0 "TY1B" "TY1B protein" ytty2b_f 29,0,0,0 "TY2B" "TY2B protein" ytty1b_er2 29,0,0,0 "TY1B" "TY1B protein" ytty1b_pr1 29,0,0,0 "TY1B" "TY1B protein" ytty1b_pr2 29,0,0,0 "TY1B" "TY1B protein" Propertest Accuracy: 9/14 (64.29%) Propertest Frequency class '29/0/0/0': 35/1321 (2.65%) New (unknown) data (875 items): ytyor191w - 99,0,0,0 "RIS1" "similarity to RAD5 protein" ytylr467w - 99,0,0,0 "YRF1-5" "strong similarity to subtelomeric encoded proteins" ------------------ Rule 443: eval(_1,_2,gte1.1),db_ref(_2,yepd) = 0 eval(_1,_2,gte1.1),classification(_2,metazoa) = 1 eval(_1,_2,b0.0_1.0e-8),classification(_2,sphingomonas_group) = 0 eval(_1,_2,b0.0_1.0e-8),classification(_2,hystricognathi) = 0 yeast_to_yeast(_1,_2,b3.3e-2_0.73),eval(_1,_3,b0.0_1.0e-8),classification(_3,chondrichthyes) = 0 yeast_to_yeast(_1,_2,b5.0e-4_3.3e-2),eval(_1,_3,b0.0_1.0e-8),classification(_3,beta_subdivision) = 0 eval(_1,_2,gte1.1),classification(_2,euglenozoa),keyword(_2,transmembrane) = 0 eval(_1,_2,gte1.1),mol_wt(_2,b1485_38502),db_ref(_2,gcrdb) = 0 eval(_1,_2,b4.0e-4_4.5e-2),classification(_2,cyanobacteria),db_ref(_2,pir) = 0 eval(_1,_2,b1.0e-8_4.0e-4),classification(_2,escherichia),keyword(_2,plasmid) = 0 eval(_1,_2,b1.0e-8_4.0e-4),classification(_2,salmonella),db_ref(_2,pir) = 0 eval(_1,_2,b1.0e-8_4.0e-4),classification(_2,mycobacteriaceae),db_ref(_2,prints) = 0 eval(_1,_2,b0.0_1.0e-8),classification(_2,actinopterygii),keyword(_2,transmembrane) = 0 eval(_1,_2,b0.0_1.0e-8),sq_len(_2,b16_344),db_ref(_2,transfac) = 1 eval(_1,_2,b0.0_1.0e-8),sq_len(_2,b16_344),classification(_2,streptococcaceae) = 0 -> class 4/0/0/0 "TRANSCRIPTION" Evaluation on training data (1681 items): ytykr062w 4,5,1,1 "TFA2" "TFIIE subunit (transcription initiation factor), 43 KD" 40,10,0,0 "TFA2" "TFIIE subunit (transcription initiation factor), 43 KD" ytypr199c 4,99,0,0 "ARR1" "involved in resistance to arsenic compounds" ytyhr006w 4,3,3,0 "STP2" "involved in pre-tRNA splicing" ytygr067c 4,99,0,0 "null" "weak similarity to transcription factors" ytyml076c 4,5,1,4 "null" "weak similarity to transcription factor" 40,10,0,0 "null" "weak similarity to transcription factor" ytyhl009c 4,5,1,4 "YAP3" "transcription factor, of a fungal-specific family of bzip proteins" 40,10,0,0 "YAP3" "transcription factor, of a fungal-specific family of bzip proteins" ytyor344c 1,5,4,0 "TYE7" "basic helix-loop-helix transcription factor" 4,5,1,4 "TYE7" "basic helix-loop-helix transcription factor" 40,10,0,0 "TYE7" "basic helix-loop-helix transcription factor" ytyhr041c 4,5,1,1 "SRB2" "DNA-directed RNA polymerase II holoenzyme and Kornberg's mediator (SRB) subcomplex subunit" 40,10,0,0 "SRB2" "DNA-directed RNA polymerase II holoenzyme and Kornberg's mediator (SRB) subcomplex subunit" ytyfl031w 1,6,10,0 "HAC1" "transcription factor" 10,1,99,0 "HAC1" "transcription factor" 4,5,1,4 "HAC1" "transcription factor" 40,10,0,0 "HAC1" "transcription factor" ytycl066w 14,4,3,3 "HMLALPHA1" "mating type regulatory protein, silenced copy at HML" 4,5,1,4 "HMLALPHA1" "mating type regulatory protein, silenced copy at HML" 40,10,0,0 "HMLALPHA1" "mating type regulatory protein, silenced copy at HML" ytydr123c 1,6,10,0 "INO2" "basic helix-loop-helix (BHLH) transcription factor" 4,5,1,4 "INO2" "basic helix-loop-helix (BHLH) transcription factor" 40,10,0,0 "INO2" "basic helix-loop-helix (BHLH) transcription factor" ytypl129w 1,4,4,0 "ANC1" "TFIIF subunit (transcription initiation factor), 30 kD" 1,5,4,0 "ANC1" "TFIIF subunit (transcription initiation factor), 30 kD" 14,4,3,3 "ANC1" "TFIIF subunit (transcription initiation factor), 30 kD" 3,3,1,0 "ANC1" "TFIIF subunit (transcription initiation factor), 30 kD" 4,5,1,1 "ANC1" "TFIIF subunit (transcription initiation factor), 30 kD" 40,10,0,0 "ANC1" "TFIIF subunit (transcription initiation factor), 30 kD" ytygl166w 13,1,1,1 "CUP2" "copper-dependent transcription factor" 4,5,1,4 "CUP2" "copper-dependent transcription factor" 40,10,0,0 "CUP2" "copper-dependent transcription factor" ytyml099c 1,1,4,0 "ARG81" "transcription factor involved in arginine metabolism" 1,2,4,0 "ARG81" "transcription factor involved in arginine metabolism" 4,5,1,4 "ARG81" "transcription factor involved in arginine metabolism" 40,10,0,0 "ARG81" "transcription factor involved in arginine metabolism" ytyjl056c 4,5,1,4 "ZAP1" "metalloregulatory protein involved in zinc-responsive transcriptional regulation" 40,10,0,0 "ZAP1" "metalloregulatory protein involved in zinc-responsive transcriptional regulation" ytypr086w 4,5,1,1 "SUA7" "TFIIB subunit (transcription initiation factor), factor E" 40,10,0,0 "SUA7" "TFIIB subunit (transcription initiation factor), factor E" ytyir009w 4,5,5,1 "MSL1" "U2 snRNA-associated protein with similarity to U2B" 6,10,0,0 "MSL1" "U2 snRNA-associated protein with similarity to U2B" ytymr042w 1,1,4,0 "ARG80" "transcription factor involved in arginine metabolism" 1,2,4,0 "ARG80" "transcription factor involved in arginine metabolism" 4,5,1,4 "ARG80" "transcription factor involved in arginine metabolism" 40,10,0,0 "ARG80" "transcription factor involved in arginine metabolism" ytydr145w 4,5,1,1 "TAF61" "TFIID and SAGA subunit" 4,5,1,4 "TAF61" "TFIID and SAGA subunit" ytykl032c 4,5,1,4 "IXR1" "intrastrand crosslink recognition protein and transcription factor" 40,10,0,0 "IXR1" "intrastrand crosslink recognition protein and transcription factor" ytydr308c 4,5,1,1 "SRB7" "DNA-directed RNA polymerase II holoenzyme and kornberg's mediator (SRB) subcomplex subunit" 40,10,0,0 "SRB7" "DNA-directed RNA polymerase II holoenzyme and kornberg's mediator (SRB) subcomplex subunit" ytypr186c 4,1,1,0 "PZF1" "TFIIIA (transcription initiation factor)" 4,3,1,0 "PZF1" "TFIIIA (transcription initiation factor)" 40,10,0,0 "PZF1" "TFIIIA (transcription initiation factor)" ytyel009c 1,1,4,0 "GCN4" "transcriptional activator of amino acid biosynthetic genes" 4,5,1,4 "GCN4" "transcriptional activator of amino acid biosynthetic genes" 40,10,0,0 "GCN4" "transcriptional activator of amino acid biosynthetic genes" ytypr013c 4,99,0,0 "null" "similarity to transcription factors" ytygl035c 1,5,4,0 "MIG1" "transcriptional repressor" 4,5,1,4 "MIG1" "transcriptional repressor" 40,10,0,0 "MIG1" "transcriptional repressor" ytycl037c 13,1,1,1 "SRO9" "La motif-containing proteins that modulate mRNA translation" 4,99,0,0 "SRO9" "La motif-containing proteins that modulate mRNA translation" ytykl058w 4,5,1,1 "TOA2" "TFIIA subunit (transcription initiation factor), 13.5 kD" 40,10,0,0 "TOA2" "TFIIA subunit (transcription initiation factor), 13.5 kD" ytynl025c 1,5,4,0 "SSN8" "DNA-directed RNA polymerase II holoenzyme and Kornberg's mediator (SRB) subcomplex subunit, cyclin C homolog" 3,3,2,0 "SSN8" "DNA-directed RNA polymerase II holoenzyme and Kornberg's mediator (SRB) subcomplex subunit, cyclin C homolog" 4,5,1,1 "SSN8" "DNA-directed RNA polymerase II holoenzyme and Kornberg's mediator (SRB) subcomplex subunit, cyclin C homolog" 40,10,0,0 "SSN8" "DNA-directed RNA polymerase II holoenzyme and Kornberg's mediator (SRB) subcomplex subunit, cyclin C homolog" ytynl107w 4,5,1,4 "YAF9" "similarity to human AF-9 protein" ytymr182c 4,5,1,4 "RGM1" "transcriptional repressor protein" 40,10,0,0 "RGM1" "transcriptional repressor protein" ytyer148w 4,1,1,0 "SPT15" "the TATA-binding protein TBP" 4,3,1,0 "SPT15" "the TATA-binding protein TBP" 4,5,1,1 "SPT15" "the TATA-binding protein TBP" 40,10,0,0 "SPT15" "the TATA-binding protein TBP" ytybl021c 4,5,1,4 "HAP3" "CCAAT-binding factor subunit" 40,10,0,0 "HAP3" "CCAAT-binding factor subunit" ytybr198c 4,5,1,1 "TAF90" "TFIID and SAGA subunit" 4,5,1,4 "TAF90" "TFIID and SAGA subunit" 40,10,0,0 "TAF90" "TFIID and SAGA subunit" ytykr099w 1,1,4,0 "BAS1" "transcription factor" 1,3,13,0 "BAS1" "transcription factor" 4,5,1,4 "BAS1" "transcription factor" 40,10,0,0 "BAS1" "transcription factor" ytygr005c 4,5,1,1 "TFG2" "TFIIF subunit (transcription initiation factor), 54 kD" 40,10,0,0 "TFG2" "TFIIF subunit (transcription initiation factor), 54 kD" ytyjr147w 11,1,0,0 "HMS2" "High-copy MEP2 Suppressor" 4,5,1,4 "HMS2" "High-copy MEP2 Suppressor" ytygr104c 4,5,1,1 "SRB5" "DNA-directed RNA polymerase II holoenzyme and Kornberg's mediator (SRB) subcomplex subunit" 40,10,0,0 "SRB5" "DNA-directed RNA polymerase II holoenzyme and Kornberg's mediator (SRB) subcomplex subunit" ytynr010w 3,3,1,0 "CSE2" "subunit of RNA polymerase II mediator complex" 4,5,1,1 "CSE2" "subunit of RNA polymerase II mediator complex" 40,10,0,0 "CSE2" "subunit of RNA polymerase II mediator complex" ytygl025c 3,1,5,0 "PGD1" "mediator complex subunit" 4,5,1,4 "PGD1" "mediator complex subunit" 40,10,0,0 "PGD1" "mediator complex subunit" ytycr040w 14,4,3,3 "MATALPHA1" "mating type regulatory protein, expressed copy at MAT locus" 4,5,1,4 "MATALPHA1" "mating type regulatory protein, expressed copy at MAT locus" 40,10,0,0 "MATALPHA1" "mating type regulatory protein, expressed copy at MAT locus" ytydr253c 1,1,4,0 "MET32" "transcriptional regulator of sulfur amino acid metabolism" 1,2,4,0 "MET32" "transcriptional regulator of sulfur amino acid metabolism" 4,5,1,4 "MET32" "transcriptional regulator of sulfur amino acid metabolism" ytymr070w 4,5,1,4 "MOT3" "high-copy suppressor of MOT1-SPT3 synthetic lethality" ytygl122c 4,5,5,0 "NAB2" "nuclear poly(A)-binding protein" 4,7,0,0 "NAB2" "nuclear poly(A)-binding protein" 40,10,0,0 "NAB2" "nuclear poly(A)-binding protein" Training Accuracy: 43/43 (100.00%) Training Frequency class '4/0/0/0': 321/1681 (19.10%) Evaluation on validation data (875 items): ytyll010c - 6,7,3,0 "PSR1" "plasma membrane phosphatase involved in sodium stress response" ytypr104c 4,5,1,4 "FHL1" "transcriptional activator of the forkhead/hnf3 family" 40,10,0,0 "FHL1" "transcriptional activator of the forkhead/hnf3 family" ytty2b_dr1 - 29,0,0,0 "TY2B" "TY2B protein" ytygl131c - 40,3,0,0 "null" "weak similarity to S.pombe hypothetical protein C3H1.12C" ytymr072w - 3,1,3,0 "ABF2" "high mobility group protein" 3,1,5,0 "ABF2" "high mobility group protein" 30,16,0,0 "ABF2" "high mobility group protein" 40,10,3,0 "ABF2" "high mobility group protein" 40,16,0,0 "ABF2" "high mobility group protein" ytydr096w - 3,1,5,1 "GIS1" "DNA damage-responsive repressor of PHR1" ytypr119w - 14,4,3,1 "CLB2" "cyclin, G2/M-specific" 3,3,1,0 "CLB2" "cyclin, G2/M-specific" ytygl073w 11,1,0,0 "HSF1" "heat shock transcription factor" 3,3,1,0 "HSF1" "heat shock transcription factor" 4,5,1,4 "HSF1" "heat shock transcription factor" 40,10,0,0 "HSF1" "heat shock transcription factor" ytybl103c 1,5,4,0 "RTG3" "bHLH/zip transcription factor that regulates CIT2 gene expression" 4,5,1,4 "RTG3" "bHLH/zip transcription factor that regulates CIT2 gene expression" 40,10,0,0 "RTG3" "bHLH/zip transcription factor that regulates CIT2 gene expression" ytyjr127c 4,5,99,0 "ZMS1" "transcription factor with similarity to regulatory protein ARD1P" ytypl230w 4,99,0,0 "USV1" "similarity to RGM1P, weak similarity to transcription factors" ytymr021c 11,1,0,0 "MAC1" "metal binding activator" 4,5,1,4 "MAC1" "metal binding activator" 40,10,0,0 "MAC1" "metal binding activator" ytyer169w 4,5,1,4 "RPH1" "similarity to human retinoblastoma binding protein 2" ytydr379w - 10,1,99,0 "RGA2" "similarity to Dbm1p and to the rat GAP-associated protein p190" ytynl312w - 3,1,3,0 "RFA2" "DNA replication factor A, 36 kDa subunit" 40,10,0,0 "RFA2" "DNA replication factor A, 36 kDa subunit" ytynl251c 4,5,1,4 "NRD1" "involved in regulation of nuclear pre-mRNA abundance" 40,10,0,0 "NRD1" "involved in regulation of nuclear pre-mRNA abundance" ytymr043w 1,1,4,0 "MCM1" "transcription factor of the MADS box family" 1,2,4,0 "MCM1" "transcription factor of the MADS box family" 1,5,4,0 "MCM1" "transcription factor of the MADS box family" 1,6,10,0 "MCM1" "transcription factor of the MADS box family" 11,1,0,0 "MCM1" "transcription factor of the MADS box family" 11,7,0,0 "MCM1" "transcription factor of the MADS box family" 14,4,3,3 "MCM1" "transcription factor of the MADS box family" 14,4,3,5 "MCM1" "transcription factor of the MADS box family" 3,3,1,0 "MCM1" "transcription factor of the MADS box family" 4,5,1,4 "MCM1" "transcription factor of the MADS box family" 40,10,0,0 "MCM1" "transcription factor of the MADS box family" ytymr037c 11,1,0,0 "MSN2" "stress responsive regulatory protein" 4,5,1,4 "MSN2" "stress responsive regulatory protein" 40,10,0,0 "MSN2" "stress responsive regulatory protein" 40,3,0,0 "MSN2" "stress responsive regulatory protein" ytyor213c 3,1,9,5 "SAS5" "subunit of the RSC complex" 3,3,1,0 "SAS5" "subunit of the RSC complex" 4,5,1,4 "SAS5" "subunit of the RSC complex" 40,10,3,0 "SAS5" "subunit of the RSC complex" ytyil105c 4,99,0,0 "null" "weak similarity to probable transcription factor ASK10P" ytynl167c 4,5,1,4 "SKO1" "cre-binding bzip protein" 40,10,0,0 "SKO1" "cre-binding bzip protein" ytyor127w - 14,4,3,1 "RGA1" "RHO-type GTPase-activating protein for CDC42P" 14,4,3,3 "RGA1" "RHO-type GTPase-activating protein for CDC42P" Validation Accuracy: 13/22 (59.09%) Validation Frequency class '4/0/0/0': 161/875 (18.40%) Evaluation on propertest data (1321 items): ytydr174w - 40,10,3,0 "HMO1" "Non-histone protein" ytypl021w - 30,1,0,0 "ECM23" "similarity to SRD1P" ytykl062w 1,5,4,0 "MSN4" "transcriptional activator" 11,1,0,0 "MSN4" "transcriptional activator" 4,5,1,4 "MSN4" "transcriptional activator" 40,10,0,0 "MSN4" "transcriptional activator" 40,3,0,0 "MSN4" "transcriptional activator" ytynl016w 4,5,99,0 "PUB1" "major polyadenylated RNA-binding protein of nucleus and cytoplasm" 40,10,0,0 "PUB1" "major polyadenylated RNA-binding protein of nucleus and cytoplasm" 40,3,0,0 "PUB1" "major polyadenylated RNA-binding protein of nucleus and cytoplasm" ytynl286w 4,5,5,1 "CUS2" "cold sensitive U2 snRNA Suppressor" ytycr065w 4,5,1,4 "HCM1" "transcription factor" 40,10,0,0 "HCM1" "transcription factor" ytyll041c - 2,10,0,0 "SDH2" "succinate dehydrogenase iron-sulfur protein subunit" 40,16,0,0 "SDH2" "succinate dehydrogenase iron-sulfur protein subunit" ytydl008w - 3,3,1,0 "APC11" "subunit of the anaphase promoting complex" 40,10,0,0 "APC11" "subunit of the anaphase promoting complex" 6,13,1,0 "APC11" "subunit of the anaphase promoting complex" 6,7,0,0 "APC11" "subunit of the anaphase promoting complex" ytyir001c 4,5,99,0 "SGN1" "similarity to D.melanogaster RNA binding protein" ytyjl116c - 14,10,0,0 "NCA3" "involved in regulation of synthesis of ATP6P and Atp8p" ytyhl027w 3,3,2,0 "RIM101" "meiotic regulatory protein" 4,5,1,4 "RIM101" "meiotic regulatory protein" 40,10,0,0 "RIM101" "meiotic regulatory protein" ytypr065w 1,7,7,0 "ROX1" "heme-dependent transcriptional repressor of hypoxic genes" 4,5,1,4 "ROX1" "heme-dependent transcriptional repressor of hypoxic genes" 40,10,0,0 "ROX1" "heme-dependent transcriptional repressor of hypoxic genes" ytydr045c 4,5,1,1 "RPC11" "RNA polymerase III subunit C11, required for RNA cleavage activity and transcription termination" ytyir005w 4,99,0,0 "IST3" "similarity to RNA-binding proteins" ytty3a_g - 29,0,0,0 "TY3A" "TY3A protein" ytty3a_i - 29,0,0,0 "TY3A" "TY3A protein" ytyor113w 4,99,0,0 "AZF1" "asparagine-rich zinc finger protein" 40,10,0,0 "AZF1" "asparagine-rich zinc finger protein" ytydl048c 1,1,7,0 "STP4" "involved in pre-tRNA splicing and in uptake of branched-chain amino acids" 4,3,3,0 "STP4" "involved in pre-tRNA splicing and in uptake of branched-chain amino acids" ytypl085w - 40,7,0,0 "SEC16" "multidomain vesicle coat protein" 40,9,0,0 "SEC16" "multidomain vesicle coat protein" 6,10,0,0 "SEC16" "multidomain vesicle coat protein" 8,7,0,0 "SEC16" "multidomain vesicle coat protein" ytydr146c 14,4,3,3 "SWI5" "transcription factor" 4,5,1,4 "SWI5" "transcription factor" 40,10,0,0 "SWI5" "transcription factor" ytypl089c 14,1,3,99 "RLM1" "transcription factor of the MADS box family" 4,5,1,4 "RLM1" "transcription factor of the MADS box family" 40,10,0,0 "RLM1" "transcription factor of the MADS box family" ytydl240w - 14,4,3,5 "LRG1" "GTPase-activating protein of the rho/rac family" ytyer028c 4,5,99,0 "null" "similarity to MIG1P" ytycl032w - 13,11,3,7 "STE50" "pheromone response pathway protein" 14,4,3,3 "STE50" "pheromone response pathway protein" ytyjl006c 4,5,1,4 "CTK2" "carboxy-terminal domain (CTD) kinase, beta subunit" 40,10,0,0 "CTK2" "carboxy-terminal domain (CTD) kinase, beta subunit" ytyor319w 4,5,5,1 "HSH49" "essential yeast splicing factor" 40,10,0,0 "HSH49" "essential yeast splicing factor" ytygl071w 13,1,1,1 "RCS1" "iron-regulated transcriptional repressor" 4,5,1,4 "RCS1" "iron-regulated transcriptional repressor" 40,10,0,0 "RCS1" "iron-regulated transcriptional repressor" ytyfr023w - 3,1,5,1 "PES4" "DNA-directed DNA polymerase epsilon suppressor" 40,10,0,0 "PES4" "DNA-directed DNA polymerase epsilon suppressor" ytynl027w 11,1,0,0 "CRZ1" "calcineurin responsive zinc-finger" 13,1,1,99 "CRZ1" "calcineurin responsive zinc-finger" 4,5,1,4 "CRZ1" "calcineurin responsive zinc-finger" ytylr131c 1,5,4,0 "ACE2" "metallothionein expression activator" 3,3,3,0 "ACE2" "metallothionein expression activator" 4,5,1,4 "ACE2" "metallothionein expression activator" 40,10,0,0 "ACE2" "metallothionein expression activator" ytypl038w 1,1,4,0 "MET31" "transcriptional regulator of sulfur amino acid metabolism" 1,2,4,0 "MET31" "transcriptional regulator of sulfur amino acid metabolism" 4,5,1,4 "MET31" "transcriptional regulator of sulfur amino acid metabolism" ytyjl041w 4,3,99,0 "NSP1" "nuclear pore protein" 40,10,0,0 "NSP1" "nuclear pore protein" 40,5,0,0 "NSP1" "nuclear pore protein" 8,1,0,0 "NSP1" "nuclear pore protein" ytydr463w 4,3,3,0 "STP1" "pre-tRNA splicing protein, transcription factor" 4,5,1,4 "STP1" "pre-tRNA splicing protein, transcription factor" 40,10,0,0 "STP1" "pre-tRNA splicing protein, transcription factor" ytyml015c 4,5,1,1 "TAF40" "TFIID subunit (TBP-associated factor), 40KD" 40,10,0,0 "TAF40" "TFIID subunit (TBP-associated factor), 40KD" ytyol108c 1,6,10,0 "INO4" "basic helix-loop-helix transcription factor" 4,5,1,4 "INO4" "basic helix-loop-helix transcription factor" 40,10,0,0 "INO4" "basic helix-loop-helix transcription factor" ytyor140w 4,5,1,4 "SFL1" "transcription factor" 40,10,0,0 "SFL1" "transcription factor" ytyer130c 4,5,1,4 "null" "similarity to MSN2P and weak similarity to MSN4P" ytyil036w 3,1,3,0 "CST6" "ATF/CREB activator" 4,5,1,4 "CST6" "ATF/CREB activator" ytyil131c 4,5,1,4 "FKH1" "forkhead protein, involved in transcriptional silencing, cell morphology and cell cycle" 40,10,0,0 "FKH1" "forkhead protein, involved in transcriptional silencing, cell morphology and cell cycle" Propertest Accuracy: 28/39 (71.79%) Propertest Frequency class '4/0/0/0': 282/1321 (21.35%) New (unknown) data (875 items): ytydr433w - 99,0,0,0 "KRE22" "questionable ORF" ytydl179w - 98,0,0,0 "PCL9" "cyclin like protein interacting with PHO85P" ytyfr032c - 99,0,0,0 "null" "weak similarity to S.pombe polyadenylate-binding protein, YPR112c and SBP1P" ytykl084w - 99,0,0,0 "null" "strong similarity to S.pombe hypothetical protein SPAC29B12" ytyjl019w - 99,0,0,0 "null" "weak similarity to hypothetical protein C. elegans" ytyil079c - 99,0,0,0 "null" "strong similarity to hypothetical protein YDL175c" ytyll046c - 98,0,0,0 "RNP1" "ribonucleoprotein" ytybl031w - 99,0,0,0 "SHE1" "hypothetical protein" ytynl338w - 99,0,0,0 "null" "strong similarity to subtelomeric encoded poteins" ytydr266c - 99,0,0,0 "null" "similarity to hypothetical C.elegans protein" ytydl012c - 99,0,0,0 "null" "strong similarity to hypothetical protein YBR016w and YDR210w" ytyir013c - 99,0,0,0 "GAT4" "strong similarity to GAT3, similarity to GAT2" ytydl117w - 99,0,0,0 "CYK3" "similarity to hypothetical S. pombe protein, protein possibly involved in cytokinesis" ------------------ Rule 1116: eval(_1,_2,b0.0_1.0e-8),classification(_2,desulfurococcales) = 1 eval(_1,_2,b4.5e-2_1.1),sq_len(_2,b662_970),classification(_2,euteleostei) = 0 eval(_1,_2,b4.0e-4_4.5e-2),classification(_2,clostridiaceae),db_ref(_2,hssp) = 0 eval(_1,_2,b0.0_1.0e-8),classification(_2,salmonella),db_ref(_2,stygene) = 1 -> class 1/0/0/0 "METABOLISM" Evaluation on training data (1681 items): ytynr033w 1,7,1,0 "ABZ1" "para-aminobenzoate synthase" ytylr027c 1,1,1,0 "AAT2" "aspartate aminotransferase, cytosolic" 1,2,1,0 "AAT2" "aspartate aminotransferase, cytosolic" 40,19,0,0 "AAT2" "aspartate aminotransferase, cytosolic" 40,3,0,0 "AAT2" "aspartate aminotransferase, cytosolic" ytyer090w 1,1,1,0 "TRP2" "anthranilate synthase component I" 40,3,0,0 "TRP2" "anthranilate synthase component I" ytydl022w 1,5,1,0 "GPD1" "glycerol-3-phosphate dehydrogenase (NAD+), cytoplasmic" 11,1,0,0 "GPD1" "glycerol-3-phosphate dehydrogenase (NAD+), cytoplasmic" 13,11,3,13 "GPD1" "glycerol-3-phosphate dehydrogenase (NAD+), cytoplasmic" 40,3,0,0 "GPD1" "glycerol-3-phosphate dehydrogenase (NAD+), cytoplasmic" ytynr058w 1,7,1,0 "BIO3" "DAPA aminotransferase" ytypr069c 1,20,17,3 "SPE3" "putrescine aminopropyltransferase (spermidine synthase)" 30,1,0,0 "SPE3" "putrescine aminopropyltransferase (spermidine synthase)" ytygr012w 1,1,1,0 "null" "similarity to E.nidulans cysteine synthase" ytyml008c 1,6,1,0 "ERG6" "S-adenosyl-methionine delta-24-sterol-c-methyltransferase" 40,99,0,0 "ERG6" "S-adenosyl-methionine delta-24-sterol-c-methyltransferase" ytydr127w 1,1,1,0 "ARO1" "arom pentafunctional enzyme" 40,3,0,0 "ARO1" "arom pentafunctional enzyme" ytypr167c 1,1,1,0 "MET16" "3'-phosphoadenylylsulfate reductase" 1,2,1,0 "MET16" "3'-phosphoadenylylsulfate reductase" ytymr296c 1,6,1,0 "LCB1" "serine C-palmitoyltransferase subunit" ytyel021w 1,3,4,0 "URA3" "orotidine-5'-phosphate decarboxylase" ytygr019w 1,1,1,0 "UGA1" "4-aminobutyrate aminotransferase (GABA transaminase)" 1,2,4,0 "UGA1" "4-aminobutyrate aminotransferase (GABA transaminase)" ytykl211c 1,1,1,0 "TRP3" "anthranilate synthase component II" 40,3,0,0 "TRP3" "anthranilate synthase component II" ytyel046c 1,1,1,0 "GLY1" "L-threonine aldolase, low-specific" 1,1,10,0 "GLY1" "L-threonine aldolase, low-specific" ytypl113c 1,5,1,0 "null" "similarity to glycerate dehydrogenases" ytyer065c 1,5,1,0 "ICL1" "isocitrate lyase" 2,1,0,0 "ICL1" "isocitrate lyase" 2,22,0,0 "ICL1" "isocitrate lyase" 40,3,0,0 "ICL1" "isocitrate lyase" ytydr111c 1,1,1,0 "null" "strong similarity to alanine transaminase" 1,1,10,0 "null" "strong similarity to alanine transaminase" 1,2,1,0 "null" "strong similarity to alanine transaminase" ytyal062w 1,1,10,1 "GDH3" "NADP-glutamate dehydrogenase" 1,2,1,0 "GDH3" "NADP-glutamate dehydrogenase" 30,1,0,0 "GDH3" "NADP-glutamate dehydrogenase" ytyer069w 1,1,1,0 "ARG5,6" "acetylglutamate kinase and acetylglutamyl-phosphate reductase" 40,16,0,0 "ARG5,6" "acetylglutamate kinase and acetylglutamyl-phosphate reductase" ytyol096c 1,7,1,0 "COQ3" "enzyme of ubiquinone (coenzyme Q) biosynthesis" 40,16,0,0 "COQ3" "enzyme of ubiquinone (coenzyme Q) biosynthesis" ytypl214c 1,7,1,0 "THI6" "thiamin-phosphate pyrophosphorylase and hydroxyethylthiazole kinase" ytykl001c 1,1,1,0 "MET14" "ATP adenosine-5'-phosphosulfate 3'-phosphotransferase" 1,2,1,0 "MET14" "ATP adenosine-5'-phosphosulfate 3'-phosphotransferase" ytyil167w 1,1,10,0 "SDL1" "serine dehydratase" 40,3,0,0 "SDL1" "serine dehydratase" ytygr256w 1,5,1,0 "GND2" "phosphogluconate dehydrogenase" 2,7,0,0 "GND2" "phosphogluconate dehydrogenase" ytyil168w 1,1,10,0 "SDL1" "serine dehydratase" ytymr189w 1,1,10,0 "GCV2" "glycine decarboxylase P subunit" 40,16,0,0 "GCV2" "glycine decarboxylase P subunit" ytyfr047c 1,7,1,0 "null" "strong similarity to human quinolinate phosphoribosyltransferase" ytyor375c 1,1,10,0 "GDH1" "glutamate dehydrogenase (NADP+)" 1,2,1,0 "GDH1" "glutamate dehydrogenase (NADP+)" 40,3,0,0 "GDH1" "glutamate dehydrogenase (NADP+)" ytyll058w 1,1,1,0 "null" "similarity to N.crassa O-succinylhomoserine (thiol)-lyase" ytydr232w 1,7,1,0 "HEM1" "5-aminolevulinate synthase" 40,16,0,0 "HEM1" "5-aminolevulinate synthase" ytydr158w 1,1,1,0 "HOM2" "aspartate-semialdehyde dehydrogenase" Training Accuracy: 32/32 (100.00%) Training Frequency class '1/0/0/0': 443/1681 (26.35%) Evaluation on validation data (875 items): ytygl202w 1,1,4,0 "ARO8" "aromatic amino acid aminotransferase I" ytydl078c 1,5,1,0 "MDH3" "malate dehydrogenase, peroxisomal" 1,6,7,0 "MDH3" "malate dehydrogenase, peroxisomal" 2,99,0,0 "MDH3" "malate dehydrogenase, peroxisomal" 40,19,0,0 "MDH3" "malate dehydrogenase, peroxisomal" ytyol058w 1,1,1,0 "ARG1" "argininosuccinate synthetase" 1,2,1,0 "ARG1" "argininosuccinate synthetase" 40,3,0,0 "ARG1" "argininosuccinate synthetase" ytykl216w 1,3,4,0 "URA1" "dihydroorotate dehydrogenase" 40,3,0,0 "URA1" "dihydroorotate dehydrogenase" ytycr053w 1,1,1,0 "THR4" "threonine synthase (o-p-homoserine p-lyase)" 40,3,0,0 "THR4" "threonine synthase (o-p-homoserine p-lyase)" ytybr263w 1,3,1,0 "SHM1" "serine hydroxymethyltransferase precursor, mitochondrial" 1,6,1,0 "SHM1" "serine hydroxymethyltransferase precursor, mitochondrial" 40,16,0,0 "SHM1" "serine hydroxymethyltransferase precursor, mitochondrial" ytykl218c 1,1,10,0 "SRY1" "strong similarity to E.coli and H.influenzae threonine dehydratases" ytyhr112c 1,1,1,0 "null" "similarity to cystathionine gamma-synthases" ytyil074c 1,1,1,11 "SER33" "3-phosphoglycerate dehydrogenase" ytygr155w 1,1,1,0 "CYS4" "cystathionine beta-synthase" ytyjr130c 1,1,1,0 "STR2" "similarity to O-succinylhomoserine (thiol)-lyase" ytyer086w 1,1,1,0 "ILV1" "anabolic serine and threonine dehydratase precursor" 40,16,0,0 "ILV1" "anabolic serine and threonine dehydratase precursor" ytylr231c 1,1,10,0 "null" "strong similarity to rat kynureninase" 1,7,1,0 "null" "strong similarity to rat kynureninase" ytygr192c 1,5,1,0 "TDH3" "glyceraldehyde-3-phosphate dehydrogenase 3" 2,1,0,0 "TDH3" "glyceraldehyde-3-phosphate dehydrogenase 3" 40,3,0,0 "TDH3" "glyceraldehyde-3-phosphate dehydrogenase 3" ytyfr055w 1,1,1,0 "null" "strong similarity to beta-cystathionases" ytydl045c 1,7,1,0 "FAD1" "flavin adenine dinucleotide (FAD) synthetase" 40,3,0,0 "FAD1" "flavin adenine dinucleotide (FAD) synthetase" ytyer023w 1,1,1,0 "PRO3" "delta 1-pyrroline-5-carboxylate reductase" 40,3,0,0 "PRO3" "delta 1-pyrroline-5-carboxylate reductase" ytyal012w 1,1,1,0 "CYS3" "cystathionine gamma-lyase" 40,3,0,0 "CYS3" "cystathionine gamma-lyase" ytygl026c 1,1,1,0 "TRP5" "tryptophan synthase" 40,3,0,0 "TRP5" "tryptophan synthase" ytyil116w 1,1,1,0 "HIS5" "histidinol-phosphate aminotransferase" Validation Accuracy: 20/20 (100.00%) Validation Frequency class '1/0/0/0': 238/875 (27.20%) Evaluation on propertest data (1321 items): ytymr217w 1,3,1,0 "GUA1" "GMP synthase (glutamine-hydrolyzing)" ytygl123w - 40,3,0,0 "RPS2" "40S small subunit ribosomal protein" 5,1,0,0 "RPS2" "40S small subunit ribosomal protein" ytylr438w 1,1,1,0 "CAR2" "ornithine aminotransferase" 1,2,1,0 "CAR2" "ornithine aminotransferase" 40,3,0,0 "CAR2" "ornithine aminotransferase" ytymr250w 1,1,1,0 "GAD1" "similarity to glutamate decarboxylases" ytydr197w - 40,16,0,0 "CBS2" "cytochrome B translational activator protein" 5,7,0,0 "CBS2" "cytochrome B translational activator protein" ytyor184w 1,1,1,0 "SER1" "phosphoserine transaminase" 1,7,1,0 "SER1" "phosphoserine transaminase" ytyfl030w 1,1,1,0 "null" "similarity to several transaminases" 1,1,10,0 "null" "similarity to several transaminases" 1,2,1,0 "null" "similarity to several transaminases" ytydr120c - 4,3,6,0 "TRM1" "N2,N2-dimethylguanine tRNA methyltransferase" 40,16,0,0 "TRM1" "N2,N2-dimethylguanine tRNA methyltransferase" 40,3,0,0 "TRM1" "N2,N2-dimethylguanine tRNA methyltransferase" ytydr294c 1,6,1,0 "DPL1" "dihydrosphingosine phosphate lyase" ytynl119w - 5,1,0,0 "null" "weak similarity to M.jannaschii hypothetical protein MJ1257" ytybr034c - 40,10,0,0 "HMT1" "hnRNP arginine N-methyltransferase" 6,7,0,0 "HMT1" "hnRNP arginine N-methyltransferase" ytylr303w 1,1,1,0 "MET17" "O-acetylhomoserine sulfhydrylase" 40,3,0,0 "MET17" "O-acetylhomoserine sulfhydrylase" ytyjl052w 1,5,1,0 "TDH1" "glyceraldehyde-3-phosphate dehydrogenase 1" 2,1,0,0 "TDH1" "glyceraldehyde-3-phosphate dehydrogenase 1" 40,3,0,0 "TDH1" "glyceraldehyde-3-phosphate dehydrogenase 1" ytyhr063c 1,7,1,0 "PAN5" "weak similarity to translational activator CBS2" ytydr140w - 6,7,99,0 "FYV9" "similarity to probable methyltransferase S. pombe" ytygl184c 1,1,1,0 "STR3" "strong similarity to Emericella nidulans and similarity to other cystathionine beta-lyase and CYS3P" ytydr062w 1,6,1,0 "LCB2" "serine C-palmitoyltransferase subunit" ytyol059w 1,5,1,0 "GPD2" "glycerol-3-phosphate dehydrogenase (NAD+), mitochondrial" 40,16,0,0 "GPD2" "glycerol-3-phosphate dehydrogenase (NAD+), mitochondrial" ytyjr009c 1,5,1,0 "TDH2" "glyceraldehyde-3-phosphate dehydrogenase 2" 2,1,0,0 "TDH2" "glyceraldehyde-3-phosphate dehydrogenase 2" 40,3,0,0 "TDH2" "glyceraldehyde-3-phosphate dehydrogenase 2" ytydl182w 1,1,1,0 "LYS20" "homocitrate synthase" 1,5,1,0 "LYS20" "homocitrate synthase" 40,10,0,0 "LYS20" "homocitrate synthase" ytyml082w 1,1,1,0 "null" "similarity to N.crassa O-succinylhomoserine (thiol)-lyase" ytyjl121c 1,5,1,0 "RPE1" "D-ribulose-5-phosphate 3-epimerase" 2,7,0,0 "RPE1" "D-ribulose-5-phosphate 3-epimerase" 40,3,0,0 "RPE1" "D-ribulose-5-phosphate 3-epimerase" ytyjl060w 1,2,1,0 "null" "similarity to kynurenine aminotransferase and glutamine-phenylpyruvate transaminase" ytylr058c 1,3,1,0 "SHM2" "serine hydroxymethyltransferase, cytoplasmic" 1,6,1,0 "SHM2" "serine hydroxymethyltransferase, cytoplasmic" 40,3,0,0 "SHM2" "serine hydroxymethyltransferase, cytoplasmic" ytygl256w 1,5,1,0 "ADH4" "alcohol dehydrogenase IV" 2,16,0,0 "ADH4" "alcohol dehydrogenase IV" 40,3,0,0 "ADH4" "alcohol dehydrogenase IV" ytyhr137w 1,1,4,0 "ARO9" "aromatic amino acid aminotransferase II" ytyml110c 1,7,1,0 "COQ5" "ubiquinone biosynthesis, methyltransferase" 40,16,0,0 "COQ5" "ubiquinone biosynthesis, methyltransferase" ytydl215c 1,1,10,0 "GDH2" "NAD-specific glutamate dehydrogenase (NAD)" 1,2,1,0 "GDH2" "NAD-specific glutamate dehydrogenase (NAD)" 40,3,0,0 "GDH2" "NAD-specific glutamate dehydrogenase (NAD)" ytykl106w 1,1,1,0 "AAT1" "aspartate transaminase, mitochondrial" 40,16,0,0 "AAT1" "aspartate transaminase, mitochondrial" ytypr006c 1,5,1,0 "ICL2" "non-functional isocitrate lyase" 2,22,0,0 "ICL2" "non-functional isocitrate lyase" ytyol140w 1,1,1,0 "ARG8" "acetylornithine aminotransferase" 40,16,0,0 "ARG8" "acetylornithine aminotransferase" Propertest Accuracy: 25/31 (80.65%) Propertest Frequency class '1/0/0/0': 380/1321 (28.77%) New (unknown) data (875 items): ytynr015w - 98,0,0,0 "SMM1" "similarity to E.histolytica nitrogen fixation regulatory protein-3 homolog" ytyer152c - 99,0,0,0 "null" "weak similarity to E.coli hypothetical protein f470" ytyil003w - 99,0,0,0 "DRE3" "strong similarity to NBP35P and human nucleotide-binding protein" ytygl185c - 98,0,0,0 "null" "weak similarity to dehydrogenases" ytyml080w - 99,0,0,0 "DUS1" "similarity to A.brasilense nifR3 protein" ytynl024c - 99,0,0,0 "null" "weak similarity to YBR271w and YJR129c" ytynr029c - 99,0,0,0 "null" "similarity to P.denitrificans cobW protein" ytygl232w - 99,0,0,0 "null" "weak similarity to P.falciparum dihydropteroate synthase" ytyhr074w - 99,0,0,0 "QNS1" "weak similarity to B.subtilis spore outgrowth factor B" ------------------ Rule 1023: eval(_1,_2,b4.5e-2_1.1),classification(_2,hystricognathi) = 0 eval(_1,_2,b4.5e-2_1.1),classification(_2,echinoida) = 0 eval(_1,_2,b0.0_1.0e-8),classification(_2,sphingomonas_group) = 1 eval(_1,_2,b0.0_1.0e-8),classification(_2,desulfurococcales) = 0 yeast_to_yeast(_1,_2,b2.0e-7_5.0e-4),eval(_1,_3,b0.0_1.0e-8),classification(_3,teuthoida) = 0 eval(_1,_2,gte1.1),classification(_2,ascaridida),db_ref(_2,interpro) = 0 eval(_1,_2,b4.5e-2_1.1),classification(_2,podospora),db_ref(_2,pfam) = 0 eval(_1,_2,b4.0e-4_4.5e-2),mol_wt(_2,gte109335),db_ref(_2,ecogene) = 0 eval(_1,_2,b0.0_1.0e-8),keyword(_2,inner_membrane),db_ref(_2,prints) = 0 eval(_1,_2,b0.0_1.0e-8),mol_wt(_2,b1485_38502),db_ref(_2,yepd) = 0 -> class 1/0/0/0 "METABOLISM" Evaluation on training data (1681 items): ytyhr176w 1,2,1,0 "FMO" "flavin-containing monooxygenase" ytykl128c - 2,19,0,0 "PMU1" "high copy suppressor of ts TPS2 mutant phenotype" ytybr248c 1,1,1,0 "HIS7" "glutamine amidotransferase/cyclase" ytymr234w 1,3,16,0 "RNH1" "ribonuclease H" 30,1,0,0 "RNH1" "ribonuclease H" ytylr359w 1,3,1,0 "ADE13" "adenylosuccinate lyase" ytymr318c 1,5,1,0 "null" "strong similarity to alcohol-dehydrogenase" 2,16,0,0 "null" "strong similarity to alcohol-dehydrogenase" ytynr050c 1,1,1,0 "LYS9" "saccharopine dehydrogenase (NADP+, L-glutamate forming)" 40,3,0,0 "LYS9" "saccharopine dehydrogenase (NADP+, L-glutamate forming)" ytykl148c 1,5,1,0 "SDH1" "succinate dehydrogenase flavoprotein precursor" 2,10,0,0 "SDH1" "succinate dehydrogenase flavoprotein precursor" 40,16,0,0 "SDH1" "succinate dehydrogenase flavoprotein precursor" ytyfl018c 1,1,1,0 "LPD1" "dihydrolipoamide dehydrogenase precursor" 2,10,0,0 "LPD1" "dihydrolipoamide dehydrogenase precursor" 40,16,0,0 "LPD1" "dihydrolipoamide dehydrogenase precursor" ytygr087c 1,5,1,0 "PDC6" "pyruvate decarboxylase 3" 2,16,0,0 "PDC6" "pyruvate decarboxylase 3" 40,3,0,0 "PDC6" "pyruvate decarboxylase 3" ytydr376w 1,6,1,0 "ARH1" "mitochondrial protein with similarity to human adrenodoxin reductase and ferredoxin-NADP+ reductase" 40,16,0,0 "ARH1" "mitochondrial protein with similarity to human adrenodoxin reductase and ferredoxin-NADP+ reductase" ytymr020w 1,7,1,0 "FMS1" "involved in the biosynthesis of pantothenic acid" ytygr169c 1,7,99,0 "null" "similarity to RIB2P" ytybr117c 1,1,1,0 "TKL2" "transketolase 2" 1,5,1,0 "TKL2" "transketolase 2" 2,7,0,0 "TKL2" "transketolase 2" 40,3,0,0 "TKL2" "transketolase 2" ytynl071w 1,5,1,0 "LAT1" "dihydrolipoamide S-acetyltransferase" 2,1,0,0 "LAT1" "dihydrolipoamide S-acetyltransferase" 40,16,0,0 "LAT1" "dihydrolipoamide S-acetyltransferase" ytybr213w 1,1,1,0 "MET8" "siroheme synthase" 1,2,4,0 "MET8" "siroheme synthase" ytylr165c 1,3,0,0 "PUS5" "RNA:pseudouridine (Psi)-synthase" ytyml120c - 2,13,0,0 "NDI1" "NADH-ubiquinone-6 oxidoreductase" 40,16,0,0 "NDI1" "NADH-ubiquinone-6 oxidoreductase" ytyel020c 1,5,1,0 "null" "similarity to O.formigenes oxalyl-CoA decarboxylase" 2,99,0,0 "null" "similarity to O.formigenes oxalyl-CoA decarboxylase" ytyjl155c 1,5,1,0 "FBP26" "fructose-2,6-bisphosphatase" 1,5,4,0 "FBP26" "fructose-2,6-bisphosphatase" 40,3,0,0 "FBP26" "fructose-2,6-bisphosphatase" ytyil107c 1,5,1,0 "PFK26" "6-phosphofructose-2-kinase, isozyme 1" 1,5,4,0 "PFK26" "6-phosphofructose-2-kinase, isozyme 1" 40,3,0,0 "PFK26" "6-phosphofructose-2-kinase, isozyme 1" ytyor136w 1,5,1,0 "IDH2" "isocitrate dehydrogenase (NAD+) subunit 2, mitochondrial" 2,10,0,0 "IDH2" "isocitrate dehydrogenase (NAD+) subunit 2, mitochondrial" 4,99,0,0 "IDH2" "isocitrate dehydrogenase (NAD+) subunit 2, mitochondrial" 40,16,0,0 "IDH2" "isocitrate dehydrogenase (NAD+) subunit 2, mitochondrial" ytymr208w 1,6,10,0 "ERG12" "mevalonate kinase" 40,3,0,0 "ERG12" "mevalonate kinase" ytylr345w 1,5,4,0 "null" "similarity to PFK26P and other 6-phosphofructo-2-kinases" 2,1,0,0 "null" "similarity to PFK26P and other 6-phosphofructo-2-kinases" ytymr303c 1,5,1,0 "ADH2" "alcohol dehydrogenase II" 2,16,0,0 "ADH2" "alcohol dehydrogenase II" 40,3,0,0 "ADH2" "alcohol dehydrogenase II" ytymr145c - 2,13,0,0 "NDH1" "mitochondrial cytosolically directed NADH dehydrogenase" 40,16,0,0 "NDH1" "mitochondrial cytosolically directed NADH dehydrogenase" ytyol056w 1,5,1,0 "GPM3" "phosphoglycerate mutase" 2,1,0,0 "GPM3" "phosphoglycerate mutase" ytyor074c 1,3,7,0 "CDC21" "thymidylate synthase" 40,10,0,0 "CDC21" "thymidylate synthase" ytymr323w 1,5,1,0 "null" "strong similarity to phosphopyruvate hydratases" 2,1,0,0 "null" "strong similarity to phosphopyruvate hydratases" ytykl152c 1,5,1,0 "GPM1" "phosphoglycerate mutase" 2,1,0,0 "GPM1" "phosphoglycerate mutase" 40,3,0,0 "GPM1" "phosphoglycerate mutase" ytyel047c - 2,10,0,0 "FRDS1" "soluble fumarate reductase, cytoplasmic" 40,3,0,0 "FRDS1" "soluble fumarate reductase, cytoplasmic" ytybl098w 1,1,10,0 "null" "similarity to human and D.melanogaster kynurenine 3-monooxygenase" 1,7,1,0 "null" "similarity to human and D.melanogaster kynurenine 3-monooxygenase" ytydr380w 1,5,1,0 "ARO10" "similarity to PDC6P, THI3P and to pyruvate decarboxylases" 2,16,0,0 "ARO10" "similarity to PDC6P, THI3P and to pyruvate decarboxylases" ytylr134w 1,5,1,0 "PDC5" "pyruvate decarboxylase, isozyme 2" 2,16,0,0 "PDC5" "pyruvate decarboxylase, isozyme 2" 40,3,0,0 "PDC5" "pyruvate decarboxylase, isozyme 2" ytygr254w 1,5,1,0 "ENO1" "enolase I (2-phosphoglycerate dehydratase)" 2,1,0,0 "ENO1" "enolase I (2-phosphoglycerate dehydratase)" 40,3,0,0 "ENO1" "enolase I (2-phosphoglycerate dehydratase)" ytygr255c 1,7,1,0 "COQ6" "monooxygenase" ytygr175c 1,6,1,0 "ERG1" "squalene monooxygenase" 40,7,0,0 "ERG1" "squalene monooxygenase" 40,99,0,0 "ERG1" "squalene monooxygenase" ytyhr072w 1,6,1,0 "ERG7" "lanosterol synthase" 40,7,0,0 "ERG7" "lanosterol synthase" ytygr007w 1,6,1,0 "MUQ1" "choline phosphate cytidylyltransferase" ytymr113w 1,7,1,0 "FOL3" "dihydrofolate synthetase" ytykl024c 1,3,4,0 "URA6" "uridine-monophosphate kinase" 40,10,0,0 "URA6" "uridine-monophosphate kinase" 40,3,0,0 "URA6" "uridine-monophosphate kinase" ytyor393w 1,5,1,0 "ERR1" "enolase related protein" 2,1,0,0 "ERR1" "enolase related protein" ytykr043c 1,5,1,0 "null" "weak similarity to phosphoglycerate mutase" 2,1,0,0 "null" "weak similarity to phosphoglycerate mutase" ytypr004c - 2,13,0,0 "null" "strong similarity to electron transfer flavoproteins alpha chain" 40,16,0,0 "null" "strong similarity to electron transfer flavoproteins alpha chain" ytycr105w 1,5,1,0 "null" "strong similarity to alcohol dehydrogenases" 2,16,0,0 "null" "strong similarity to alcohol dehydrogenases" ytyhr174w 1,5,1,0 "ENO2" "enolase II (2-phosphoglycerate dehydratase)" 2,1,0,0 "ENO2" "enolase II (2-phosphoglycerate dehydratase)" 40,3,0,0 "ENO2" "enolase II (2-phosphoglycerate dehydratase)" ytynr012w 1,3,4,0 "URK1" "uridine kinase" Training Accuracy: 42/47 (89.36%) Training Frequency class '1/0/0/0': 443/1681 (26.35%) Evaluation on validation data (875 items): ytyhr169w - 4,99,0,0 "DBP8" "strong similarity to DRS1P and other probable ATP-dependent RNA helicases" ytybr252w 1,3,4,0 "DUT1" "dUTP pyrophosphatase precursor" ytyil125w 1,5,1,0 "KGD1" "2-oxoglutarate dehydrogenase complex E1 component" 2,10,0,0 "KGD1" "2-oxoglutarate dehydrogenase complex E1 component" 40,16,0,0 "KGD1" "2-oxoglutarate dehydrogenase complex E1 component" ytyor241w 1,7,1,0 "MET7" "tetrahydrofolylpolyglutamate synthase" ytypl276w - 2,16,0,0 "null" "identical to a region of YOR388c" ytypl017c 1,5,1,0 "null" "strong similarity to LPD1P and other dihydrolipoamide dehydrogenases" ytynl009w 1,6,4,0 "IDP3" "isocitrate dehydrogenase, NADP-dependent" 2,99,0,0 "IDP3" "isocitrate dehydrogenase, NADP-dependent" 40,19,0,0 "IDP3" "isocitrate dehydrogenase, NADP-dependent" ytyer136w - 40,3,0,0 "GDI1" "GDP dissociation inhibitor" 8,16,0,0 "GDI1" "GDP dissociation inhibitor" ytydr353w 1,2,1,0 "TRR1" "thioredoxin reductase (NADPH)" 1,3,7,0 "TRR1" "thioredoxin reductase (NADPH)" ytyal044c 1,1,10,5 "GCV3" "glycine decarboxylase, subunit H" 40,16,0,0 "GCV3" "glycine decarboxylase, subunit H" ytydr021w - 4,1,4,0 "FAL1" "involved in maturation of 18S rRNA" 40,10,0,0 "FAL1" "involved in maturation of 18S rRNA" ytyhr106w 1,2,1,0 "TRR2" "thioredoxin reductase" 1,3,7,0 "TRR2" "thioredoxin reductase" ytylr044c 1,5,1,0 "PDC1" "pyruvate decarboxylase, isozyme 1" 2,13,0,0 "PDC1" "pyruvate decarboxylase, isozyme 1" 2,16,0,0 "PDC1" "pyruvate decarboxylase, isozyme 1" 40,3,0,0 "PDC1" "pyruvate decarboxylase, isozyme 1" ytyil162w 1,5,1,0 "SUC2" "invertase (sucrose hydrolyzing enzyme)" 40,27,0,0 "SUC2" "invertase (sucrose hydrolyzing enzyme)" ytymr190c - 14,10,0,0 "SGS1" "DNA helicase" 3,1,5,0 "SGS1" "DNA helicase" ytydl021w 1,5,1,0 "GPM2" "phosphoglycerate mutase" 2,1,0,0 "GPM2" "phosphoglycerate mutase" ytyor020c - 40,16,0,0 "HSP10" "chaperonin, mitochondrial" 6,4,0,0 "HSP10" "chaperonin, mitochondrial" ytyhr132c - 30,1,0,0 "ECM14" "involved in cell wall biogenesis and architecture" ytyil094c 1,1,1,0 "LYS12" "homo-isocitrate dehydrogenase" ytylr070c 1,5,1,0 "null" "strong similarity to sugar dehydrogenases" ytyor110w 1,5,4,0 "TFC7" "TFIIIC (transcription initiation factor) subunit, 55 kDa" 4,1,1,0 "TFC7" "TFIIIC (transcription initiation factor) subunit, 55 kDa" 4,3,1,0 "TFC7" "TFIIIC (transcription initiation factor) subunit, 55 kDa" 40,10,0,0 "TFC7" "TFIIIC (transcription initiation factor) subunit, 55 kDa" ytyjr137c 1,1,1,0 "ECM17" "involved in cell wall biogenesis and architecture" 1,2,1,0 "ECM17" "involved in cell wall biogenesis and architecture" 30,1,0,0 "ECM17" "involved in cell wall biogenesis and architecture" ytymr108w 1,1,1,0 "ILV2" "acetolactate synthase" 40,16,0,0 "ILV2" "acetolactate synthase" ytypr176c 1,6,7,0 "BET2" "geranylgeranyltransferase type II beta subunit" 6,7,0,0 "BET2" "geranylgeranyltransferase type II beta subunit" ytymr220w 1,6,1,0 "ERG8" "phosphomevalonate kinase" 40,3,0,0 "ERG8" "phosphomevalonate kinase" ytyor142w 1,5,1,0 "LSC1" "succinate-CoA ligase alpha subunit" 2,10,0,0 "LSC1" "succinate-CoA ligase alpha subunit" ytydr076w - 14,4,3,3 "RAD55" "DNA repair protein" 3,1,5,1 "RAD55" "DNA repair protein" 3,3,2,0 "RAD55" "DNA repair protein" 40,10,0,0 "RAD55" "DNA repair protein" ytyor217w - 3,1,3,0 "RFC1" "DNA replication factor C, 95 KD subunit" 3,3,1,0 "RFC1" "DNA replication factor C, 95 KD subunit" 40,10,0,0 "RFC1" "DNA replication factor C, 95 KD subunit" ytypl281c 1,5,1,0 "ERR2" "enolase related protein" 2,1,0,0 "ERR2" "enolase related protein" Validation Accuracy: 20/29 (68.97%) Validation Frequency class '1/0/0/0': 238/875 (27.20%) Evaluation on propertest data (1321 items): ytyol066c 1,7,1,0 "RIB2" "DRAP deaminase" ytynl112w - 4,1,4,0 "DBP2" "ATP-dependent RNA helicase of DEAD box family" 40,10,0,0 "DBP2" "ATP-dependent RNA helicase of DEAD box family" ytyhr025w 1,1,1,0 "THR1" "homoserine kinase" ytyol086c 1,5,1,0 "ADH1" "alcohol dehydrogenase I" 2,16,0,0 "ADH1" "alcohol dehydrogenase I" 40,3,0,0 "ADH1" "alcohol dehydrogenase I" ytypl029w 1,3,16,0 "SUV3" "ATP-dependent RNA helicase, mitochondrial" 4,1,4,0 "SUV3" "ATP-dependent RNA helicase, mitochondrial" 4,5,5,1 "SUV3" "ATP-dependent RNA helicase, mitochondrial" 4,99,0,0 "SUV3" "ATP-dependent RNA helicase, mitochondrial" 40,16,0,0 "SUV3" "ATP-dependent RNA helicase, mitochondrial" 5,7,0,0 "SUV3" "ATP-dependent RNA helicase, mitochondrial" ytydr009w 1,5,4,0 "GAL3" "galactokinase" 4,5,1,4 "GAL3" "galactokinase" ytynl037c 1,5,1,0 "IDH1" "isocitrate dehydrogenase (NAD+) subunit 1, mitochondrial" 2,10,0,0 "IDH1" "isocitrate dehydrogenase (NAD+) subunit 1, mitochondrial" 4,99,0,0 "IDH1" "isocitrate dehydrogenase (NAD+) subunit 1, mitochondrial" 40,16,0,0 "IDH1" "isocitrate dehydrogenase (NAD+) subunit 1, mitochondrial" ytyor283w 1,5,1,0 "null" "weak similarity to phosphoglycerate mutases" 2,1,0,0 "null" "weak similarity to phosphoglycerate mutases" ytyml004c 1,1,10,0 "GLO1" "glyoxalase I" ytymr024w - 40,16,0,0 "MRPL3" "ribosomal protein of the large subunit, mitochondrial" 5,1,0,0 "MRPL3" "ribosomal protein of the large subunit, mitochondrial" ytyer178w 1,5,1,0 "PDA1" "pyruvate dehydrogenase (lipoamide) alpha chain precursor" 2,1,0,0 "PDA1" "pyruvate dehydrogenase (lipoamide) alpha chain precursor" 40,16,0,0 "PDA1" "pyruvate dehydrogenase (lipoamide) alpha chain precursor" ytyjl138c - 40,3,0,0 "TIF2" "translation initiation factor eIF4A" 5,4,0,0 "TIF2" "translation initiation factor eIF4A" ytypl262w - 2,10,0,0 "FUM1" "fumarate hydratase" 40,16,0,0 "FUM1" "fumarate hydratase" 40,3,0,0 "FUM1" "fumarate hydratase" ytyjr159w 1,5,1,0 "SOR1" "sorbitol dehydrogenase" ytydl160c - 4,99,0,0 "DHH1" "putative RNA helicase of the DEAD box family" 40,10,0,0 "DHH1" "putative RNA helicase of the DEAD box family" ytydl080c 1,1,10,0 "THI3" "positive regulation factor of thiamin metabolism" 1,7,7,0 "THI3" "positive regulation factor of thiamin metabolism" 4,5,1,4 "THI3" "positive regulation factor of thiamin metabolism" ytydl066w 1,5,1,0 "IDP1" "isocitrate dehydrogenase (NADP+), mitochondrial" 2,10,0,0 "IDP1" "isocitrate dehydrogenase (NADP+), mitochondrial" 40,16,0,0 "IDP1" "isocitrate dehydrogenase (NADP+), mitochondrial" ytykl132c 1,7,4,0 "RMA1" "similarity to B.subtilis folC protein and strong similarity to YMR113w" ytycl018w 1,1,1,0 "LEU2" "beta-isopropyl-malate dehydrogenase" 40,3,0,0 "LEU2" "beta-isopropyl-malate dehydrogenase" ytydl246c 1,5,1,0 "null" "strong similarity to SOR1P" ytykr059w - 40,3,0,0 "TIF1" "translation initiation factor 4A" 5,4,0,0 "TIF1" "translation initiation factor 4A" ytymr083w 1,5,1,0 "ADH3" "alcohol dehydrogenase III" 40,16,0,0 "ADH3" "alcohol dehydrogenase III" ytynr043w 1,6,1,0 "MVD1" "mevalonate pyrophosphate decarboxylase" ytyhr018c 1,1,1,0 "ARG4" "arginosuccinate lyase" 40,3,0,0 "ARG4" "arginosuccinate lyase" ytybr020w 1,5,1,0 "GAL1" "galactokinase" 4,5,1,4 "GAL1" "galactokinase" 40,3,0,0 "GAL1" "galactokinase" ytygl236c - 40,16,0,0 "MTO1" "strong similarity to gidA E.coli protein" 5,7,0,0 "MTO1" "strong similarity to gidA E.coli protein" ytyor356w - 2,13,0,0 "null" "strong similarity to human electron transfer flavoprotein-ubiquinone oxidoreductase" 2,25,0,0 "null" "strong similarity to human electron transfer flavoprotein-ubiquinone oxidoreductase" ytypr074c 1,1,1,0 "TKL1" "transketolase 1" 1,5,1,0 "TKL1" "transketolase 1" 2,7,0,0 "TKL1" "transketolase 1" 40,3,0,0 "TKL1" "transketolase 1" ytynl241c 1,5,1,0 "ZWF1" "glucose-6-phosphate dehydrogenase" 11,1,0,0 "ZWF1" "glucose-6-phosphate dehydrogenase" 11,7,0,0 "ZWF1" "glucose-6-phosphate dehydrogenase" 2,7,0,0 "ZWF1" "glucose-6-phosphate dehydrogenase" 40,3,0,0 "ZWF1" "glucose-6-phosphate dehydrogenase" ytypl091w - 11,1,0,0 "GLR1" "glutathione reductase (NADPH)" 11,7,0,0 "GLR1" "glutathione reductase (NADPH)" ytylr174w 1,5,1,0 "IDP2" "isocitrate dehydrogenase, cytosolic" 2,10,0,0 "IDP2" "isocitrate dehydrogenase, cytosolic" 40,3,0,0 "IDP2" "isocitrate dehydrogenase, cytosolic" ytydl090c 1,6,7,0 "RAM1" "protein farnesyltransferase, beta subunit" 10,1,99,0 "RAM1" "protein farnesyltransferase, beta subunit" 40,3,0,0 "RAM1" "protein farnesyltransferase, beta subunit" 6,7,0,0 "RAM1" "protein farnesyltransferase, beta subunit" Propertest Accuracy: 23/32 (71.88%) Propertest Frequency class '1/0/0/0': 380/1321 (28.77%) New (unknown) data (875 items): ytyhr009c - 99,0,0,0 "null" "similarity to S.pombe hypothetical protein" ytyer004w - 99,0,0,0 "null" "similarity to hypothetical E.coli and C.elegans proteins" ------------------ Rule 1147: eval(_1,_2,gte1.1),mol_wt(_2,b53922_74079),db_ref(_2,pir) = 1 eval(_1,_2,gte1.1),sq_len(_2,b662_970),db_ref(_2,pir) = 1 eval(_1,_2,b4.0e-4_4.5e-2),mol_wt(_2,b1485_38502),classification(_2,triticum) = 0 eval(_1,_2,b4.0e-4_4.5e-2),sq_len(_2,b16_344),classification(_2,t4-like_phages) = 0 eval(_1,_2,b0.0_1.0e-8),keyword(_2,inner_membrane),db_ref(_2,prints) = 1 eval(_1,_2,b0.0_1.0e-8),classification(_2,beta_subdivision),db_ref(_2,hssp) = 0 eval(_1,_2,b0.0_1.0e-8),classification(_2,homo),db_ref(_2,mim) = 1 eval(_1,_2,b0.0_1.0e-8),classification(_2,rattus),db_ref(_2,interpro) = 1 eval(_1,_2,b0.0_1.0e-8),classification(_2,rhadinovirus),db_ref(_2,pir) = 0 -> class 67/0/0/0 "TRANSPORT FACILITATION" Evaluation on training data (1681 items): ytyor306c 67,99,0,0 "null" "similarity to human X-linked PEST-containing transporter" ytyor307c - 8,16,0,0 "SLY41" "secretory pathway protein" ytybr180w 11,7,0,0 "DTR1" "dityrosine transporter" 67,28,0,0 "DTR1" "dityrosine transporter" ytypr198w 11,7,0,0 "SGE1" "drug resistance protein" 67,28,0,0 "SGE1" "drug resistance protein" ytq0275 - 2,13,0,0 "COX3" "cytochrome-c oxidase chain III" 40,16,0,0 "COX3" "cytochrome-c oxidase chain III" ytynl268w 1,1,7,0 "LYP1" "lysine-specific high-affinity permease" 40,2,0,0 "LYP1" "lysine-specific high-affinity permease" 67,10,0,0 "LYP1" "lysine-specific high-affinity permease" 8,19,0,0 "LYP1" "lysine-specific high-affinity permease" ytypr201w 40,2,0,0 "ARR3" "involved in arsenite transport" 67,4,1,1 "ARR3" "involved in arsenite transport" ytygr224w 11,7,0,0 "AZR1" "strong similarity to drug resistance protein SGE1, YKR105c and YCL069W" 67,28,0,0 "AZR1" "strong similarity to drug resistance protein SGE1, YKR105c and YCL069W" ytyer056c 1,3,13,0 "FCY2" "purine-cytosine permease" 1,3,19,0 "FCY2" "purine-cytosine permease" 40,2,0,0 "FCY2" "purine-cytosine permease" 67,16,0,0 "FCY2" "purine-cytosine permease" 8,19,0,0 "FCY2" "purine-cytosine permease" ytylr026c - 40,8,0,0 "SED5" "syntaxin (T-SNARE)" 8,7,0,0 "SED5" "syntaxin (T-SNARE)" ytyfl011w 1,5,7,0 "HXT10" "hexose transporter" 40,2,0,0 "HXT10" "hexose transporter" 67,7,0,0 "HXT10" "hexose transporter" 8,19,0,0 "HXT10" "hexose transporter" ytyol163w 67,99,0,0 "null" "similarity to P. putida phthalate transporter" ytybl089w 67,99,0,0 "null" "weak similarity to A.thaliana aminoacid permease AAP3" ytydl194w 1,5,4,0 "SNF3" "high-affinity glucose transporter/regulatory protein" 1,5,7,0 "SNF3" "high-affinity glucose transporter/regulatory protein" 13,11,3,1 "SNF3" "high-affinity glucose transporter/regulatory protein" 30,1,0,0 "SNF3" "high-affinity glucose transporter/regulatory protein" 40,2,0,0 "SNF3" "high-affinity glucose transporter/regulatory protein" 67,7,0,0 "SNF3" "high-affinity glucose transporter/regulatory protein" 8,19,0,0 "SNF3" "high-affinity glucose transporter/regulatory protein" ytyil170w 1,5,7,0 "HXT12" "strong similarity to sugar transport proteins" 40,2,0,0 "HXT12" "strong similarity to sugar transport proteins" 67,7,0,0 "HXT12" "strong similarity to sugar transport proteins" 8,19,0,0 "HXT12" "strong similarity to sugar transport proteins" ytyor011w 67,50,25,0 "AUS1" "strong similarity to ATP-dependent permeases" ytydr040c 13,1,1,99 "ENA1" "P-type ATPase involved in Na+ and Li+ efflux" 40,7,0,0 "ENA1" "P-type ATPase involved in Na+ and Li+ efflux" 67,50,22,0 "ENA1" "P-type ATPase involved in Na+ and Li+ efflux" 8,99,0,0 "ENA1" "P-type ATPase involved in Na+ and Li+ efflux" ytyor348c 1,1,7,0 "PUT4" "proline and gamma-aminobutyrate permease" 40,2,0,0 "PUT4" "proline and gamma-aminobutyrate permease" 67,10,0,0 "PUT4" "proline and gamma-aminobutyrate permease" 8,19,0,0 "PUT4" "proline and gamma-aminobutyrate permease" ytydr536w 1,5,7,0 "STL1" "member of the sugar permease family" 40,2,0,0 "STL1" "member of the sugar permease family" 67,7,0,0 "STL1" "member of the sugar permease family" ytydr456w 11,1,0,0 "NHX1" "NA+-H+ antiporter" 13,1,1,3 "NHX1" "NA+-H+ antiporter" 13,1,1,99 "NHX1" "NA+-H+ antiporter" 40,16,0,0 "NHX1" "NA+-H+ antiporter" 67,4,1,2 "NHX1" "NA+-H+ antiporter" 8,7,0,0 "NHX1" "NA+-H+ antiporter" ytynr072w 1,5,7,0 "HXT17" "sugar transport protein" 40,2,0,0 "HXT17" "sugar transport protein" 67,7,0,0 "HXT17" "sugar transport protein" 8,19,0,0 "HXT17" "sugar transport protein" ytycl069w 11,7,0,0 "null" "strong similarity to drug resistance protein SGE1" 67,28,0,0 "null" "strong similarity to drug resistance protein SGE1" ytygl167c 13,1,1,99 "PMR1" "Ca2+-transporting P-type ATPase" 40,8,0,0 "PMR1" "Ca2+-transporting P-type ATPase" 67,4,1,2 "PMR1" "Ca2+-transporting P-type ATPase" 67,50,22,0 "PMR1" "Ca2+-transporting P-type ATPase" 8,7,0,0 "PMR1" "Ca2+-transporting P-type ATPase" ytyll061w 1,1,7,0 "MMP1" "high affinity S-methylmethionine permease" 67,10,0,0 "MMP1" "high affinity S-methylmethionine permease" ytydr046c 1,1,7,0 "BAP3" "valine transporter" 40,2,0,0 "BAP3" "valine transporter" 67,10,0,0 "BAP3" "valine transporter" 8,19,0,0 "BAP3" "valine transporter" ytymr279c 11,7,0,0 "null" "strong similarity to aminotriazole resistance protein" 67,28,0,0 "null" "strong similarity to aminotriazole resistance protein" ytyfl054c 67,99,0,0 "null" "similarity to channel proteins" ytyil006w 1,7,10,0 "null" "similarity to FLX1P" 67,99,0,0 "null" "similarity to FLX1P" 8,4,0,0 "null" "similarity to FLX1P" ytyjl219w 1,5,7,0 "HXT9" "hexose transport protein" 40,2,0,0 "HXT9" "hexose transport protein" 67,7,0,0 "HXT9" "hexose transport protein" 8,19,0,0 "HXT9" "hexose transport protein" ytyir028w 40,2,0,0 "DAL4" "allantoin permease" 67,19,0,0 "DAL4" "allantoin permease" 8,19,0,0 "DAL4" "allantoin permease" ytyjr001w 67,99,0,0 "null" "weak similarity to A.thaliana aminoacid permease AAP4" ytyjr095w 1,5,4,0 "SFC1" "succinate-fumarate transporter" 1,5,7,0 "SFC1" "succinate-fumarate transporter" 40,16,0,0 "SFC1" "succinate-fumarate transporter" 67,7,0,0 "SFC1" "succinate-fumarate transporter" 8,4,0,0 "SFC1" "succinate-fumarate transporter" ytyil121w 11,7,0,0 "null" "similarity to antibiotic resistance proteins" 67,28,0,0 "null" "similarity to antibiotic resistance proteins" ytybr235w 13,1,1,99 "null" "similarity to bumetanide-sensitive Na-K-Cl cotransport protein" 13,1,3,5 "null" "similarity to bumetanide-sensitive Na-K-Cl cotransport protein" 67,4,1,2 "null" "similarity to bumetanide-sensitive Na-K-Cl cotransport protein" 67,4,7,0 "null" "similarity to bumetanide-sensitive Na-K-Cl cotransport protein" ytyjl093c 13,1,1,99 "TOK1" "outward-rectifier potassium channel" 40,2,0,0 "TOK1" "outward-rectifier potassium channel" 67,1,1,0 "TOK1" "outward-rectifier potassium channel" 8,16,0,0 "TOK1" "outward-rectifier potassium channel" ytyal022c - 1,3,19,0 "FUN26" "intracellular membrane protein involved in nucleoside transport" ytykr039w 1,1,7,0 "GAP1" "general amino acid permease" 40,2,0,0 "GAP1" "general amino acid permease" 67,10,0,0 "GAP1" "general amino acid permease" 8,19,0,0 "GAP1" "general amino acid permease" ytypl265w 1,1,7,0 "DIP5" "dicarboxylic amino acid permease" 40,2,0,0 "DIP5" "dicarboxylic amino acid permease" 67,10,0,0 "DIP5" "dicarboxylic amino acid permease" ytylr348c 1,4,7,0 "DIC1" "dicarboxylate carrier protein" 1,5,7,0 "DIC1" "dicarboxylate carrier protein" 40,16,0,0 "DIC1" "dicarboxylate carrier protein" 67,4,7,0 "DIC1" "dicarboxylate carrier protein" 67,7,0,0 "DIC1" "dicarboxylate carrier protein" 8,4,0,0 "DIC1" "dicarboxylate carrier protein" ytydr343c 1,5,7,0 "HXT6" "high-affinity hexose transporter" 40,2,0,0 "HXT6" "high-affinity hexose transporter" 67,7,0,0 "HXT6" "high-affinity hexose transporter" 8,19,0,0 "HXT6" "high-affinity hexose transporter" ytyal026c 40,8,0,0 "DRS2" "P-type amino-phospholipids-ATPase" 67,4,1,2 "DRS2" "P-type amino-phospholipids-ATPase" 67,50,22,0 "DRS2" "P-type amino-phospholipids-ATPase" 8,7,0,0 "DRS2" "P-type amino-phospholipids-ATPase" ytypl189w 67,7,99,0 "GUP2" "putative glycerol transporter involved in active glycerol uptake" ytygr055w 1,1,1,0 "MUP1" "high affinity methionine permease" 1,1,7,0 "MUP1" "high affinity methionine permease" 40,2,0,0 "MUP1" "high affinity methionine permease" 67,10,0,0 "MUP1" "high affinity methionine permease" 8,19,0,0 "MUP1" "high affinity methionine permease" ytypr113w - 1,6,1,0 "PIS1" "CDP diacylglycerol--inositol 3-phosphatidyltransferase" 40,7,0,0 "PIS1" "CDP diacylglycerol--inositol 3-phosphatidyltransferase" 40,8,0,0 "PIS1" "CDP diacylglycerol--inositol 3-phosphatidyltransferase" ytydr345c 1,5,7,0 "HXT3" "low-affinity hexose transporter" 40,2,0,0 "HXT3" "low-affinity hexose transporter" 67,7,0,0 "HXT3" "low-affinity hexose transporter" 8,19,0,0 "HXT3" "low-affinity hexose transporter" ytydr011w 1,6,13,0 "SNQ2" "multidrug resistance protein" 11,7,0,0 "SNQ2" "multidrug resistance protein" 13,1,1,1 "SNQ2" "multidrug resistance protein" 40,2,0,0 "SNQ2" "multidrug resistance protein" 67,4,1,2 "SNQ2" "multidrug resistance protein" 67,50,25,0 "SNQ2" "multidrug resistance protein" ytyol075c 67,50,25,0 "null" "similarity to A.gambiae ATP-binding-cassette protein" ytygr138c 11,7,0,0 "TPO2" "polyamine transport protein" 67,28,0,0 "TPO2" "polyamine transport protein" ytycl038c 67,99,0,0 "null" "similarity to bacterial membrane transporter" ytyor079c - 11,7,0,0 "ATX2" "multicopy suppressor of SOD-linked defects" 13,1,1,1 "ATX2" "multicopy suppressor of SOD-linked defects" 40,8,0,0 "ATX2" "multicopy suppressor of SOD-linked defects" ytylr034c - 13,1,1,1 "SMF3" "strong similarity to SMF2 protein and S.pombe hypothetical protein" 40,25,0,0 "SMF3" "strong similarity to SMF2 protein and S.pombe hypothetical protein" 40,8,0,0 "SMF3" "strong similarity to SMF2 protein and S.pombe hypothetical protein" ytymr166c - 8,4,0,0 "null" "similarity to members of the mitochondrial carrier protein family" ytyel063c 1,1,7,0 "CAN1" "amino acid permease" 40,2,0,0 "CAN1" "amino acid permease" 67,10,0,0 "CAN1" "amino acid permease" 8,19,0,0 "CAN1" "amino acid permease" ytyjr040w 13,1,3,5 "GEF1" "voltage-gated chloride channel protein" 40,2,0,0 "GEF1" "voltage-gated chloride channel protein" 67,4,7,0 "GEF1" "voltage-gated chloride channel protein" 8,19,0,0 "GEF1" "voltage-gated chloride channel protein" ytyhl016c 13,1,1,99 "DUR3" "urea transport protein" 13,1,3,99 "DUR3" "urea transport protein" 40,2,0,0 "DUR3" "urea transport protein" 67,4,1,2 "DUR3" "urea transport protein" 67,4,7,0 "DUR3" "urea transport protein" ytypl036w 13,1,1,3 "PMA2" "H+-transporting P-type ATPase, minor isoform, plasma membrane" 40,2,0,0 "PMA2" "H+-transporting P-type ATPase, minor isoform, plasma membrane" 67,4,1,2 "PMA2" "H+-transporting P-type ATPase, minor isoform, plasma membrane" 67,50,22,0 "PMA2" "H+-transporting P-type ATPase, minor isoform, plasma membrane" ytyor002w - 1,5,1,0 "ALG6" "glucosyltransferase" 6,7,0,0 "ALG6" "glucosyltransferase" ytybr008c 11,7,0,0 "FLR1" "fluconazole resistance protein" 67,28,0,0 "FLR1" "fluconazole resistance protein" ytyel065w 11,7,0,0 "SIT1" "probable multidrug resistance protein" 67,28,0,0 "SIT1" "probable multidrug resistance protein" 67,4,1,1 "SIT1" "probable multidrug resistance protein" ytygr172c - 40,8,0,0 "YIP1" "golgi membrane protein" 8,7,0,0 "YIP1" "golgi membrane protein" ytyjr124c 67,99,0,0 "null" "weak similarity to Staphylococcus multidrug resistance protein" ytynl125c 67,99,0,0 "ESBP6" "similarity to YKL221w and human X-linked PEST-containing transporter" ytyhr050w - 40,16,0,0 "SMF2" "probable manganese transporter" 6,4,0,0 "SMF2" "probable manganese transporter" 8,4,0,0 "SMF2" "probable manganese transporter" ytypl134c 67,16,0,0 "ODC1" "similarity to ADP,ATP carrier proteins" 8,4,0,0 "ODC1" "similarity to ADP,ATP carrier proteins" ytygl077c 40,2,0,0 "HNM1" "choline permease" 67,10,0,0 "HNM1" "choline permease" 8,19,0,0 "HNM1" "choline permease" ytyil166c 67,19,0,0 "null" "similarity to allantoate permease DAL5P" ytyll053c 67,1,1,0 "null" "similarity to water channel proteins" ytyal067c 67,4,7,0 "SEO1" "suppressor of sulfoxyde ethionine resistance" 67,99,0,0 "SEO1" "suppressor of sulfoxyde ethionine resistance" ytyhl036w 1,1,1,0 "MUP3" "very low affinity methionine permease" 1,1,7,0 "MUP3" "very low affinity methionine permease" 40,2,0,0 "MUP3" "very low affinity methionine permease" 67,10,0,0 "MUP3" "very low affinity methionine permease" 8,19,0,0 "MUP3" "very low affinity methionine permease" ytygr096w 1,3,19,0 "null" "hypothetical mitochondrial transport protein" 67,16,0,0 "null" "hypothetical mitochondrial transport protein" 8,4,0,0 "null" "hypothetical mitochondrial transport protein" ytyfr045w 67,7,0,0 "null" "similarity to mitochondrial citrate transport proteins" ytybr043c 11,7,0,0 "null" "similarity to benomyl/methotrexate resistance protein" 67,28,0,0 "null" "similarity to benomyl/methotrexate resistance protein" ytygr191w 1,1,7,0 "HIP1" "histidine permease" 13,1,1,1 "HIP1" "histidine permease" 40,2,0,0 "HIP1" "histidine permease" 67,10,0,0 "HIP1" "histidine permease" 67,4,1,1 "HIP1" "histidine permease" 8,16,0,0 "HIP1" "histidine permease" 8,19,0,0 "HIP1" "histidine permease" ytypl058c 67,50,25,0 "PDR12" "multidrug resistance transporter" ytyll055w 67,19,0,0 "null" "similarity to DAL5P" ytybr298c 1,5,7,0 "MAL31" "maltose permease" 40,2,0,0 "MAL31" "maltose permease" 67,7,0,0 "MAL31" "maltose permease" 8,19,0,0 "MAL31" "maltose permease" ytydr039c 13,1,1,99 "ENA2" "P-type ATPase involved in Na+ efflux" 67,50,22,0 "ENA2" "P-type ATPase involved in Na+ efflux" ytydl210w 1,2,1,0 "UGA4" "GABA-specific high-affinity permease" 40,2,0,0 "UGA4" "GABA-specific high-affinity permease" 67,10,0,0 "UGA4" "GABA-specific high-affinity permease" 8,19,0,0 "UGA4" "GABA-specific high-affinity permease" ytydr119w 11,7,0,0 "null" "similarity to B.subtilis tetracyclin resistance" 67,28,0,0 "null" "similarity to B.subtilis tetracyclin resistance" ytynl065w 11,7,0,0 "AQR1" "similarity to resistance proteins" 67,28,0,0 "AQR1" "similarity to resistance proteins" ytyil013c 40,2,0,0 "PDR11" "membrane transporter" 67,28,0,0 "PDR11" "membrane transporter" 67,50,25,0 "PDR11" "membrane transporter" ytykr105c 11,7,0,0 "null" "strong similarity to SGE1P and hypothetical protein YCL069w" 67,28,0,0 "null" "strong similarity to SGE1P and hypothetical protein YCL069w" ytydl119c - 40,16,0,0 "null" "similarity to bovine Graves disease carrier protein" 8,4,0,0 "null" "similarity to bovine Graves disease carrier protein" ytynl083w - 8,4,0,0 "null" "weak similarity to rabbit peroxisomal Ca-dependent solute carrier" ytyol122c 13,1,1,1 "SMF1" "manganese transporter" 40,2,0,0 "SMF1" "manganese transporter" 6,4,0,0 "SMF1" "manganese transporter" 67,4,1,1 "SMF1" "manganese transporter" 8,19,0,0 "SMF1" "manganese transporter" ytyhr092c 1,5,7,0 "HXT4" "moderate- to low-affinity glucose transporter" 40,2,0,0 "HXT4" "moderate- to low-affinity glucose transporter" 67,7,0,0 "HXT4" "moderate- to low-affinity glucose transporter" 8,19,0,0 "HXT4" "moderate- to low-affinity glucose transporter" ytyml116w 11,7,0,0 "ATR1" "aminotriazole and 4-nitroquinoline resistance protein" 40,2,0,0 "ATR1" "aminotriazole and 4-nitroquinoline resistance protein" 67,28,0,0 "ATR1" "aminotriazole and 4-nitroquinoline resistance protein" ytq0085 13,1,1,3 "ATP6" "F1F0-ATPase complex, FO A subunit" 2,13,0,0 "ATP6" "F1F0-ATPase complex, FO A subunit" 40,16,0,0 "ATP6" "F1F0-ATPase complex, FO A subunit" 67,50,22,0 "ATP6" "F1F0-ATPase complex, FO A subunit" 8,4,0,0 "ATP6" "F1F0-ATPase complex, FO A subunit" ytypr021c 1,5,7,0 "null" "similarity to human citrate transporter protein" 67,7,0,0 "null" "similarity to human citrate transporter protein" 8,4,0,0 "null" "similarity to human citrate transporter protein" ytycl025c 1,1,7,0 "AGP1" "asparagine and glutamine permease" 40,2,0,0 "AGP1" "asparagine and glutamine permease" 67,10,0,0 "AGP1" "asparagine and glutamine permease" ytycr028c 1,1,4,0 "FEN2" "high affinity H+/pantothenate symporter" 1,2,4,0 "FEN2" "high affinity H+/pantothenate symporter" 1,5,4,0 "FEN2" "high affinity H+/pantothenate symporter" 1,6,10,0 "FEN2" "high affinity H+/pantothenate symporter" 67,19,0,0 "FEN2" "high affinity H+/pantothenate symporter" Training Accuracy: 78/91 (85.71%) Training Frequency class '67/0/0/0': 147/1681 (8.74%) Evaluation on validation data (875 items): ytypl274w 1,1,7,0 "SAM3" "high affinity S-adenosylmethionine permease" 67,10,0,0 "SAM3" "high affinity S-adenosylmethionine permease" ytyor153w 1,6,13,0 "PDR5" "pleiotropic drug resistance protein" 11,7,0,0 "PDR5" "pleiotropic drug resistance protein" 13,1,1,1 "PDR5" "pleiotropic drug resistance protein" 40,2,0,0 "PDR5" "pleiotropic drug resistance protein" 67,4,1,2 "PDR5" "pleiotropic drug resistance protein" 67,50,25,0 "PDR5" "pleiotropic drug resistance protein" ytykl221w 67,99,0,0 "null" "weak similarity to human X-linked PEST-containing transporter" ytyer039c - 8,7,0,0 "HVG1" "strong similarity to vanadate resistance protein GOG5P" ytydl247w 1,5,7,0 "null" "strong similarity to sugar transport proteins" 67,7,0,0 "null" "strong similarity to sugar transport proteins" ytybr021w 1,3,4,0 "FUR4" "uracil permease" 40,2,0,0 "FUR4" "uracil permease" 67,16,0,0 "FUR4" "uracil permease" 8,19,0,0 "FUR4" "uracil permease" ytymr088c 11,7,0,0 "null" "similarity to multidrug resistance proteins" 67,28,0,0 "null" "similarity to multidrug resistance proteins" ytykr093w 40,2,0,0 "PTR2" "peptide transporter" 67,99,0,0 "PTR2" "peptide transporter" 8,99,0,0 "PTR2" "peptide transporter" ytydl015c - 1,6,1,0 "TSC13" "required for elongation of the very long chain fatty acid (VLCFA) moiety of sphingolipids" ytykl174c 1,6,13,0 "null" "similarity to choline transport protein HNM1P" 67,10,0,0 "null" "similarity to choline transport protein HNM1P" 67,13,0,0 "null" "similarity to choline transport protein HNM1P" ytydr107c - 40,22,0,0 "null" "strong similarity to EMP70 protein" 8,7,0,0 "null" "strong similarity to EMP70 protein" ytygl084c 67,7,99,0 "GUP1" "similarity to GUP2P - putative glycerol transporter" ytynr070w 11,7,0,0 "null" "strong similarity to SNQ2P" 67,50,25,0 "null" "strong similarity to SNQ2P" ytyfl040w 1,5,7,0 "null" "similarity to yeast glucose transport proteins" 67,7,0,0 "null" "similarity to yeast glucose transport proteins" ytypr156c 11,7,0,0 "TPO3" "polyamine transporter" 67,28,0,0 "TPO3" "polyamine transporter" ytyhr048w 11,7,0,0 "null" "similarity to multidrug resistance proteins" 67,28,0,0 "null" "similarity to multidrug resistance proteins" ytybr132c 1,1,7,0 "AGP2" "amino-acid permease" 67,10,0,0 "AGP2" "amino-acid permease" ytybl042c - 1,3,4,0 "FUI1" "uridine transport protein" 40,2,0,0 "FUI1" "uridine transport protein" ytylr081w 1,5,7,0 "GAL2" "galactose (and glucose) permease" 40,2,0,0 "GAL2" "galactose (and glucose) permease" 67,7,0,0 "GAL2" "galactose (and glucose) permease" 8,19,0,0 "GAL2" "galactose (and glucose) permease" ytylr083c - 40,22,0,0 "EMP70" "endosomal protein" 8,7,0,0 "EMP70" "endosomal protein" ytydl142c - 1,6,1,0 "CRD1" "cardiolipin synthase" ytyjr077c 1,4,7,0 "MIR1" "phosphate transport protein, mitochondrial (MCF)" 13,1,3,3 "MIR1" "phosphate transport protein, mitochondrial (MCF)" 40,16,0,0 "MIR1" "phosphate transport protein, mitochondrial (MCF)" 67,4,7,0 "MIR1" "phosphate transport protein, mitochondrial (MCF)" 8,4,0,0 "MIR1" "phosphate transport protein, mitochondrial (MCF)" ytyor378w 11,7,0,0 "null" "strong similarity to aminotriazole resistance protein" 67,28,0,0 "null" "strong similarity to aminotriazole resistance protein" ytynl318c 1,5,7,0 "HXT14" "hexose transport protein" 40,2,0,0 "HXT14" "hexose transport protein" 67,7,0,0 "HXT14" "hexose transport protein" 8,19,0,0 "HXT14" "hexose transport protein" ytypr192w 67,1,1,0 "AQY1" "similarity to plasma membrane and water channel proteins" ytygr289c 1,5,7,0 "MAL11" "general alpha-glucoside permease" 67,7,0,0 "MAL11" "general alpha-glucoside permease" ytynl270c 1,1,7,0 "ALP1" "high-affinity permease for basic amino acids" 40,2,0,0 "ALP1" "high-affinity permease for basic amino acids" 67,10,0,0 "ALP1" "high-affinity permease for basic amino acids" 8,19,0,0 "ALP1" "high-affinity permease for basic amino acids" ytyel031w 13,1,1,99 "SPF1" "P-type ATPase" 67,4,1,2 "SPF1" "P-type ATPase" 67,50,22,0 "SPF1" "P-type ATPase" ytyor071c 1,3,19,0 "null" "strong similarity to Thi10p" 67,10,0,0 "null" "strong similarity to Thi10p" 67,19,0,0 "null" "strong similarity to Thi10p" ytycr034w - 1,5,1,0 "FEN1" "fatty acid elongase required for sphingolipid formation" 1,6,1,0 "FEN1" "fatty acid elongase required for sphingolipid formation" 14,1,0,0 "FEN1" "fatty acid elongase required for sphingolipid formation" 14,4,3,1 "FEN1" "fatty acid elongase required for sphingolipid formation" 14,4,3,3 "FEN1" "fatty acid elongase required for sphingolipid formation" 14,4,3,5 "FEN1" "fatty acid elongase required for sphingolipid formation" 40,2,0,0 "FEN1" "fatty acid elongase required for sphingolipid formation" Validation Accuracy: 23/30 (76.67%) Validation Frequency class '67/0/0/0': 54/875 (6.17%) Evaluation on propertest data (1321 items): ytykl220c - 13,1,1,1 "FRE2" "ferric (and cupric) reductase" 40,2,0,0 "FRE2" "ferric (and cupric) reductase" ytyor067c - 1,5,1,0 "ALG8" "glucosyltransferase" 40,7,0,0 "ALG8" "glucosyltransferase" 6,7,0,0 "ALG8" "glucosyltransferase" ytylr450w - 1,6,1,0 "HMG2" "3-hydroxy-3-methylglutaryl-coenzyme A reductase 2" 40,7,0,0 "HMG2" "3-hydroxy-3-methylglutaryl-coenzyme A reductase 2" ytyor149c - 14,1,3,99 "SMP3" "protein kinase C pathway protein" 14,4,3,1 "SMP3" "protein kinase C pathway protein" 3,3,1,0 "SMP3" "protein kinase C pathway protein" ytyil134w 1,7,10,0 "FLX1" "FAD carrier protein (MCF), mitochondrial" 40,16,0,0 "FLX1" "FAD carrier protein (MCF), mitochondrial" 67,99,0,0 "FLX1" "FAD carrier protein (MCF), mitochondrial" 8,4,0,0 "FLX1" "FAD carrier protein (MCF), mitochondrial" ytyor328w 40,2,0,0 "PDR10" "member of ATP-binding cassette (ABC) superfamily" 67,50,25,0 "PDR10" "member of ATP-binding cassette (ABC) superfamily" ytygl225w 40,8,0,0 "GOG5" "GDP-mannose transporter into the lumen of the Golgi" 67,7,0,0 "GOG5" "GDP-mannose transporter into the lumen of the Golgi" 8,7,0,0 "GOG5" "GDP-mannose transporter into the lumen of the Golgi" ytylr378c 40,7,0,0 "SEC61" "ER protein-translocation complex subunit" 6,4,0,0 "SEC61" "ER protein-translocation complex subunit" 67,99,0,0 "SEC61" "ER protein-translocation complex subunit" 8,99,0,0 "SEC61" "ER protein-translocation complex subunit" ytyll028w 11,7,0,0 "TPO1" "polyamine transport protein" 67,28,0,0 "TPO1" "polyamine transport protein" ytyhl040c 11,7,0,0 "ARN1" "ferrichrome-type siderophore transporter" 67,28,0,0 "ARN1" "ferrichrome-type siderophore transporter" ytynr055c 11,7,0,0 "HOL1" "member of major facilitator superfamily multidrug-resistance protein subfamily 1" 67,28,0,0 "HOL1" "member of major facilitator superfamily multidrug-resistance protein subfamily 1" ytymr272c - 1,6,1,0 "SCS7" "required for hydroxylation of ceramide" 40,8,0,0 "SCS7" "required for hydroxylation of ceramide" ytynr056c 1,6,13,0 "BIO5" "similarity to choline transport protein HNM1P" 67,10,0,0 "BIO5" "similarity to choline transport protein HNM1P" 67,13,0,0 "BIO5" "similarity to choline transport protein HNM1P" ytyjl214w 1,5,7,0 "HXT8" "hexose transport protein" 40,2,0,0 "HXT8" "hexose transport protein" 67,7,0,0 "HXT8" "hexose transport protein" 8,19,0,0 "HXT8" "hexose transport protein" ytyjr152w 40,2,0,0 "DAL5" "allantoate permease" 67,19,0,0 "DAL5" "allantoate permease" 8,19,0,0 "DAL5" "allantoate permease" ytyhl047c 11,7,0,0 "TAF1" "siderophore transporter for triacetylfusarinine C" 67,28,0,0 "TAF1" "siderophore transporter for triacetylfusarinine C" ytygl186c 1,3,19,0 "null" "similarity to hypothetical protein FCY21P and weak similarity to FCY2 protein" 67,16,0,0 "null" "similarity to hypothetical protein FCY21P and weak similarity to FCY2 protein" ytygl012w - 1,6,1,0 "ERG4" "sterol C-24 reductase" ytyfl055w 1,1,7,0 "AGP3" "amino acid permease" 67,10,0,0 "AGP3" "amino acid permease" ytyel004w 1,5,7,0 "YEA4" "strong similarity to K.lactis golgi uridine diphosphate-N-acetylglucosamine transporter" 40,8,0,0 "YEA4" "strong similarity to K.lactis golgi uridine diphosphate-N-acetylglucosamine transporter" 6,7,0,0 "YEA4" "strong similarity to K.lactis golgi uridine diphosphate-N-acetylglucosamine transporter" 67,7,0,0 "YEA4" "strong similarity to K.lactis golgi uridine diphosphate-N-acetylglucosamine transporter" ytylr246w - 6,7,1,0 "ERF2" "protein involved in palmitoylation and localization of RAS2P" ytydr160w - 1,1,4,0 "SSY1" "transcriptional regulator of several transporter genes" 4,5,1,4 "SSY1" "transcriptional regulator of several transporter genes" ytyjr158w 1,5,7,0 "HXT16" "member of the hexose transporter family of the major facilitator superfamily [MFS]" 40,2,0,0 "HXT16" "member of the hexose transporter family of the major facilitator superfamily [MFS]" 67,7,0,0 "HXT16" "member of the hexose transporter family of the major facilitator superfamily [MFS]" 8,19,0,0 "HXT16" "member of the hexose transporter family of the major facilitator superfamily [MFS]" ytyml123c 1,4,7,0 "PHO84" "high-affinity inorganic phosphate/H+ symporter" 13,1,1,3 "PHO84" "high-affinity inorganic phosphate/H+ symporter" 13,1,3,3 "PHO84" "high-affinity inorganic phosphate/H+ symporter" 40,2,0,0 "PHO84" "high-affinity inorganic phosphate/H+ symporter" 67,4,7,0 "PHO84" "high-affinity inorganic phosphate/H+ symporter" 67,7,0,0 "PHO84" "high-affinity inorganic phosphate/H+ symporter" 8,19,0,0 "PHO84" "high-affinity inorganic phosphate/H+ symporter" ytydr497c 1,5,7,0 "ITR1" "myo-inositol permease, major" 1,6,13,0 "ITR1" "myo-inositol permease, major" 40,2,0,0 "ITR1" "myo-inositol permease, major" 67,7,0,0 "ITR1" "myo-inositol permease, major" 8,19,0,0 "ITR1" "myo-inositol permease, major" ytyil120w 11,7,0,0 "QDR1" "similarity to antibiotic resistance proteins" 67,28,0,0 "QDR1" "similarity to antibiotic resistance proteins" ytyol119c 67,99,0,0 "null" "similarity to monocarboxylate transporter proteins" ytydr406w 67,50,25,0 "PDR15" "ATP-binding cassette transporter family member" ytydr342c 1,5,7,0 "HXT7" "high-affinity hexose transporter" 40,2,0,0 "HXT7" "high-affinity hexose transporter" 67,7,0,0 "HXT7" "high-affinity hexose transporter" 8,19,0,0 "HXT7" "high-affinity hexose transporter" ytydl245c 1,5,7,0 "HXT15" "strong similarity to HXT17P and HXT7P" 40,2,0,0 "HXT15" "strong similarity to HXT17P and HXT7P" 67,7,0,0 "HXT15" "strong similarity to HXT17P and HXT7P" ytyer060w 1,3,19,0 "FCY21" "purine-cytosine permease" 67,16,0,0 "FCY21" "purine-cytosine permease" 8,99,0,0 "FCY21" "purine-cytosine permease" ytyil049w - 14,4,3,1 "DFG10" "involved in filamentous growth, cell polarity, and cellular elongation" ytyol156w 1,5,7,0 "HXT11" "low affinity glucose transport protein" 40,2,0,0 "HXT11" "low affinity glucose transport protein" 67,7,0,0 "HXT11" "low affinity glucose transport protein" 8,19,0,0 "HXT11" "low affinity glucose transport protein" ytydr508c 1,1,7,0 "GNP1" "high-affinity glutamine permease" 67,10,0,0 "GNP1" "high-affinity glutamine permease" ytyol158c 11,7,0,0 "ENB1" "a gene of the major facilitator superfamily encodes a transporter for enterobactin" 67,28,0,0 "ENB1" "a gene of the major facilitator superfamily encodes a transporter for enterobactin" ytyjl198w 1,4,7,0 "PHO90" "low affinity phosphate transporter" 13,1,3,3 "PHO90" "low affinity phosphate transporter" 67,4,7,0 "PHO90" "low affinity phosphate transporter" ytycr075c - 40,7,0,0 "ERS1" "intracellular protein transport protein" 6,4,0,0 "ERS1" "intracellular protein transport protein" 8,99,0,0 "ERS1" "intracellular protein transport protein" ytycl073c 11,7,0,0 "null" "strong similarity to subtelomeric encoded proteins" 67,28,0,0 "null" "strong similarity to subtelomeric encoded proteins" ytymr011w 1,5,7,0 "HXT2" "high-affinity hexose transporter" 40,2,0,0 "HXT2" "high-affinity hexose transporter" 67,7,0,0 "HXT2" "high-affinity hexose transporter" 8,19,0,0 "HXT2" "high-affinity hexose transporter" ytyel069c 1,5,7,0 "HXT13" "high-affinity hexose transporter" 40,2,0,0 "HXT13" "high-affinity hexose transporter" 67,7,0,0 "HXT13" "high-affinity hexose transporter" 8,19,0,0 "HXT13" "high-affinity hexose transporter" ytymr013c - 1,6,7,0 "SEC59" "dolichol kinase" 14,4,3,5 "SEC59" "dolichol kinase" 40,7,0,0 "SEC59" "dolichol kinase" ytybr296c 1,4,7,0 "PHO89" "Na+-coupled phosphate transport protein, high affinity" 13,1,1,99 "PHO89" "Na+-coupled phosphate transport protein, high affinity" 13,1,3,3 "PHO89" "Na+-coupled phosphate transport protein, high affinity" 67,4,7,0 "PHO89" "Na+-coupled phosphate transport protein, high affinity" ytyil088c 67,99,0,0 "null" "weak similarity to A.thaliana aminoacid permease AAP4" ytyol020w 1,1,7,0 "TAT2" "high affinity tryptophan transport protein" 40,2,0,0 "TAT2" "high affinity tryptophan transport protein" 67,10,0,0 "TAT2" "high affinity tryptophan transport protein" 8,19,0,0 "TAT2" "high affinity tryptophan transport protein" ytydr038c 13,1,1,99 "ENA5" "P-type ATPase involved in Na+ efflux" 67,50,22,0 "ENA5" "P-type ATPase involved in Na+ efflux" ytydr387c 1,5,7,0 "null" "similarity to ITR1P and ITR2P and E.coli araE" 67,7,0,0 "null" "similarity to ITR1P and ITR2P and E.coli araE" ytyjr160c 1,5,7,0 "null" "strong similarity to MAL31P" 67,7,0,0 "null" "strong similarity to MAL31P" ytyol103w 1,5,7,0 "ITR2" "myo-inositol permease, minor" 1,6,13,0 "ITR2" "myo-inositol permease, minor" 40,2,0,0 "ITR2" "myo-inositol permease, minor" 67,7,0,0 "ITR2" "myo-inositol permease, minor" 8,19,0,0 "ITR2" "myo-inositol permease, minor" ytydr135c 11,7,0,0 "YCF1" "glutathione S-conjugate transporter, vacuolar" 40,25,0,0 "YCF1" "glutathione S-conjugate transporter, vacuolar" 67,50,25,0 "YCF1" "glutathione S-conjugate transporter, vacuolar" 8,13,0,0 "YCF1" "glutathione S-conjugate transporter, vacuolar" ytycr098c 1,6,13,0 "GIT1" "glycerophosphoinositol transporter" 40,2,0,0 "GIT1" "glycerophosphoinositol transporter" 67,13,0,0 "GIT1" "glycerophosphoinositol transporter" ytykr106w 11,7,0,0 "null" "strong similarity to subtelomeric encoded proteins" 67,28,0,0 "null" "strong similarity to subtelomeric encoded proteins" ytygl006w 13,1,1,99 "PMC1" "Ca2+-transporting P-type ATPase" 40,25,0,0 "PMC1" "Ca2+-transporting P-type ATPase" 67,4,1,2 "PMC1" "Ca2+-transporting P-type ATPase" 67,50,22,0 "PMC1" "Ca2+-transporting P-type ATPase" 8,13,0,0 "PMC1" "Ca2+-transporting P-type ATPase" ytygl008c 13,1,1,3 "PMA1" "H+-transporting P-type ATPase, major isoform, plasma membrane" 40,2,0,0 "PMA1" "H+-transporting P-type ATPase, major isoform, plasma membrane" 67,4,1,2 "PMA1" "H+-transporting P-type ATPase, major isoform, plasma membrane" 67,50,22,0 "PMA1" "H+-transporting P-type ATPase, major isoform, plasma membrane" ytypr003c 13,1,3,1 "null" "similarity to sulphate transporter proteins" 67,4,7,0 "null" "similarity to sulphate transporter proteins" ytygl022w - 1,5,1,0 "STT3" "oligosaccharyl transferase subunit" 40,7,0,0 "STT3" "oligosaccharyl transferase subunit" 6,7,0,0 "STT3" "oligosaccharyl transferase subunit" ytycr023c 11,7,0,0 "null" "weak similarity to E.coli tetracycline resistance protein TCR1" 67,99,0,0 "null" "weak similarity to E.coli tetracycline resistance protein TCR1" ytygl104c 1,5,7,0 "null" "similarity to glucose transport proteins" 67,7,0,0 "null" "similarity to glucose transport proteins" ytybr068c 1,1,7,0 "BAP2" "leucine permease, high-affinity (S1)" 40,2,0,0 "BAP2" "leucine permease, high-affinity (S1)" 67,10,0,0 "BAP2" "leucine permease, high-affinity (S1)" 8,19,0,0 "BAP2" "leucine permease, high-affinity (S1)" ytyhr094c 1,5,7,0 "HXT1" "low-affinity hexose transporter" 40,2,0,0 "HXT1" "low-affinity hexose transporter" 67,7,0,0 "HXT1" "low-affinity hexose transporter" 8,19,0,0 "HXT1" "low-affinity hexose transporter" ytylr004c 67,19,0,0 "null" "similarity to allantoate transport protein" ytybr069c 1,1,7,0 "TAT1" "amino acid permease" 40,2,0,0 "TAT1" "amino acid permease" 67,10,0,0 "TAT1" "amino acid permease" 8,19,0,0 "TAT1" "amino acid permease" ytynr013c 1,4,7,0 "PHO91" "similarity to PHO87P and PHO90P" 13,1,3,3 "PHO91" "similarity to PHO87P and PHO90P" 67,4,7,0 "PHO91" "similarity to PHO87P and PHO90P" ytyhr096c 1,5,7,0 "HXT5" "member of the hexose transporter family" 40,2,0,0 "HXT5" "member of the hexose transporter family" 67,7,0,0 "HXT5" "member of the hexose transporter family" 8,19,0,0 "HXT5" "member of the hexose transporter family" ytyhr002w 1,3,19,0 "null" "similarity to bovine mitochondrial carrier protein/Grave's disease carrier protein" 67,16,0,0 "null" "similarity to bovine mitochondrial carrier protein/Grave's disease carrier protein" 8,4,0,0 "null" "similarity to bovine mitochondrial carrier protein/Grave's disease carrier protein" Propertest Accuracy: 52/64 (81.25%) Propertest Frequency class '67/0/0/0': 105/1321 (7.95%) New (unknown) data (875 items): ytyll005c - 99,0,0,0 "SPO75" "similarity to A.thaliana hyp1 protein" ytydr338c - 99,0,0,0 "null" "similarity to ERC1P" ytymr155w - 99,0,0,0 "null" "weak similarity to E.coli hypothetical protein f402" ytybr187w - 99,0,0,0 "null" "similarity to mouse putative transmembrane protein FT27" ytykl083w - 99,0,0,0 "null" "questionable ORF" ytylr047c - 99,0,0,0 "null" "similarity to hypothetical protein YGL160w" ytydr470c - 99,0,0,0 "UGO1" "similarity to chromosome segregation protein CSE1P" ytydr459c - 99,0,0,0 "null" "weak similarity to YNL326c" ytydr126w - 99,0,0,0 "PSL10" "similarity to hypothetical protein YLR246w and YOL003c" ytydr492w - 99,0,0,0 "null" "strong similarity to hypothetical protein YOL002c" ytykl030w - 99,0,0,0 "null" "questionable ORF" ytyjl059w - 98,0,0,0 "YHC3" "may function as a chaperone, similarity to human Batten disease-related protein CLN3" ytymr221c - 99,0,0,0 "null" "weak similarity to photosystem II protein D2" ytypl264c - 99,0,0,0 "null" "strong similarity to YMR253c" ytyol137w - 99,0,0,0 "null" "weak similarity to tetracycline resistance proteins" ytynl275w - 98,0,0,0 "null" "similarity to human band 3 anion transport protein" ytybr220c - 99,0,0,0 "null" "similarity to human acetyl-coenzyme A transporter" ytynl321w - 99,0,0,0 "null" "weak similarity to VCX1P" ytymr034c - 99,0,0,0 "null" "weak similarity to YPR201w" ytydl054c - 99,0,0,0 "null" "similarity to hypothetical protein C. albicans" ytybr147w - 99,0,0,0 "null" "strong similarity to hypothetical protein YOL092w" ytydr411c - 99,0,0,0 "null" "weak similarity to DER1P" ytyml038c - 99,0,0,0 "YMD8" "similarity to vanadate resistance protein GOG5P, member of the triose phosphate translocater family of membrane transporters" ------------------ Rule 1097: eval(_1,_2,b0.0_1.0e-8),classification(_2,desulfurococcales) = 1 eval(_1,_2,b0.0_1.0e-8),keyword(_2,inner_membrane),db_ref(_2,prints) = 0 eval(_1,_2,b0.0_1.0e-8),classification(_2,salmonella),db_ref(_2,stygene) = 0 eval(_1,_2,b0.0_1.0e-8),sq_len(_2,b16_344),classification(_2,cyprinidae) = 0 -> class 5/0/0/0 "PROTEIN SYNTHESIS" Evaluation on training data (1681 items): ytyel034w 1,3,16,0 "HYP2" "translation initiation factor eIF5A.1" 40,3,0,0 "HYP2" "translation initiation factor eIF5A.1" 5,4,0,0 "HYP2" "translation initiation factor eIF5A.1" ytyer117w 40,3,0,0 "RPL23B" "ribosomal protein L23.e" 5,1,0,0 "RPL23B" "ribosomal protein L23.e" ytybr181c 40,3,0,0 "RPS6B" "ribosomal protein S6.e" 5,1,0,0 "RPS6B" "ribosomal protein S6.e" ytyil133c 40,3,0,0 "RPL16A" "60S large subunit ribosomal protein" 5,1,0,0 "RPL16A" "60S large subunit ribosomal protein" ytyhr021c 40,3,0,0 "RPS27B" "ribosomal protein S27.e" 5,1,0,0 "RPS27B" "ribosomal protein S27.e" ytypl104w 40,16,0,0 "MSD1" "aspartate--tRNA ligase, mitochondrial" 5,10,0,0 "MSD1" "aspartate--tRNA ligase, mitochondrial" ytyjr016c - 1,1,1,0 "ILV3" "dihydroxy-acid dehydratase" 40,16,0,0 "ILV3" "dihydroxy-acid dehydratase" ytyal035w 40,3,0,0 "FUN12" "general translation factor eIF2 homolog" 5,4,1,0 "FUN12" "general translation factor eIF2 homolog" ytybl087c 40,3,0,0 "RPL23A" "60S large subunit ribosomal protein L23.e" 5,1,0,0 "RPL23A" "60S large subunit ribosomal protein L23.e" ytypl040c 40,16,0,0 "ISM1" "isoleucine--tRNA ligase, mitochondrial" 5,10,0,0 "ISM1" "isoleucine--tRNA ligase, mitochondrial" ytydr354w - 1,1,1,0 "TRP4" "anthranilate phosphoribosyltransferase" 40,3,0,0 "TRP4" "anthranilate phosphoribosyltransferase" ytynr036c 5,1,0,0 "null" "strong similarity to ribosomal protein S12" ytyhl022c - 3,1,5,0 "SPO11" "catalytic subunit of the meiotic double strand break transesterase" 3,3,2,0 "SPO11" "catalytic subunit of the meiotic double strand break transesterase" 40,10,0,0 "SPO11" "catalytic subunit of the meiotic double strand break transesterase" ytydr450w 40,3,0,0 "RPS18A" "ribosomal protein S18.e.c4" 5,1,0,0 "RPS18A" "ribosomal protein S18.e.c4" ytyor168w 40,3,0,0 "GLN4" "glutaminyl-tRNA synthetase" 5,10,0,0 "GLN4" "glutaminyl-tRNA synthetase" ytylr029c 40,3,0,0 "RPL15A" "60s large subunit ribosomal protein L15.e.c12" 5,1,0,0 "RPL15A" "60s large subunit ribosomal protein L15.e.c12" ytygl147c 40,3,0,0 "RPL9A" "ribosomal protein L9.e" 5,1,0,0 "RPL9A" "ribosomal protein L9.e" ytypr047w 40,16,0,0 "MSF1" "phenylalanine--tRNA ligase alpha chain, mitochondrial" 5,10,0,0 "MSF1" "phenylalanine--tRNA ligase alpha chain, mitochondrial" 6,4,0,0 "MSF1" "phenylalanine--tRNA ligase alpha chain, mitochondrial" ytydl102w - 3,1,3,0 "CDC2" "DNA-directed DNA polymerase delta, catalytic 125 KD subunit" 3,1,5,1 "CDC2" "DNA-directed DNA polymerase delta, catalytic 125 KD subunit" 40,10,0,0 "CDC2" "DNA-directed DNA polymerase delta, catalytic 125 KD subunit" ytydr025w 40,3,0,0 "RPS11A" "ribosomal protein S11.e" 5,1,0,0 "RPS11A" "ribosomal protein S11.e" ytybr031w 40,3,0,0 "RPL4A" "ribosomal protein" 5,1,0,0 "RPL4A" "ribosomal protein" ytykl180w 40,3,0,0 "RPL17A" "ribosomal protein L17.e" 5,1,0,0 "RPL17A" "ribosomal protein L17.e" ytyil078w 1,3,16,0 "THS1" "threonyl tRNA synthetase, cytosolic" 40,3,0,0 "THS1" "threonyl tRNA synthetase, cytosolic" 5,10,0,0 "THS1" "threonyl tRNA synthetase, cytosolic" ytydr041w 5,1,0,0 "RSM10" "component of the mitochondrial ribosomal small subunit" ytygl245w 5,10,0,0 "null" "strong similarity to glutamine--tRNA ligase" ytypr081c 5,10,0,0 "null" "strong similarity to glycyl-tRNA synthetases" ytyhr141c 40,3,0,0 "RPL42B" "ribosomal protein L36a.e" 5,1,0,0 "RPL42B" "ribosomal protein L36a.e" ytydl202w 40,16,0,0 "MRPL11" "ribosomal protein of the large subunit, mitochondrial" 5,1,0,0 "MRPL11" "ribosomal protein of the large subunit, mitochondrial" ytylr146c - 1,20,17,3 "SPE4" "spermine synthase" ytyor369c 40,3,0,0 "RPS12" "40S small subunit acidic ribosomal protein S12" 5,1,0,0 "RPS12" "40S small subunit acidic ribosomal protein S12" ytyhr147c 40,16,0,0 "MRPL6" "ribosomal protein of the large subunit, mitochondrial" 5,1,0,0 "MRPL6" "ribosomal protein of the large subunit, mitochondrial" ytycr012w - 1,5,1,0 "PGK1" "phosphoglycerate kinase" 2,1,0,0 "PGK1" "phosphoglycerate kinase" 40,3,0,0 "PGK1" "phosphoglycerate kinase" ytydr064w 40,3,0,0 "RPS13" "ribosomal protein" 5,1,0,0 "RPS13" "ribosomal protein" ytyml026c 40,3,0,0 "RPS18B" "ribosomal protein S18.e.c13" 5,1,0,0 "RPS18B" "ribosomal protein S18.e.c13" ytylr406c 40,3,0,0 "RPL31B" "60S large subunit ribosomal protein L31.e.c12" 5,1,0,0 "RPL31B" "60S large subunit ribosomal protein L31.e.c12" ytylr340w 40,3,0,0 "RPP0" "acidic ribosomal protein L10.e" 5,1,0,0 "RPP0" "acidic ribosomal protein L10.e" ytygr286c - 1,7,1,0 "BIO2" "biotin synthetase" ytygl030w 40,3,0,0 "RPL30" "60S large subunit ribosomal protein L30.e" 5,1,0,0 "RPL30" "60S large subunit ribosomal protein L30.e" ytyer025w 40,3,0,0 "GCD11" "translation initiation factor eIF2 gamma chain" 5,4,0,0 "GCD11" "translation initiation factor eIF2 gamma chain" ytydr242w - 1,2,1,0 "AMD2" "amidase" ytybr154c - 4,1,1,0 "RPB5" "DNA-directed RNA polymerase I, II, III 25 KD subunit" 4,3,1,0 "RPB5" "DNA-directed RNA polymerase I, II, III 25 KD subunit" 4,5,1,1 "RPB5" "DNA-directed RNA polymerase I, II, III 25 KD subunit" 40,10,0,0 "RPB5" "DNA-directed RNA polymerase I, II, III 25 KD subunit" ytylr344w 40,3,0,0 "RPL26A" "60S large subunit ribosomal protein" 5,1,0,0 "RPL26A" "60S large subunit ribosomal protein" ytypr187w - 4,1,1,0 "RPO26" "DNA-directed RNA polymerase I, II, III 18 KD subunit" 4,3,1,0 "RPO26" "DNA-directed RNA polymerase I, II, III 18 KD subunit" 4,5,1,1 "RPO26" "DNA-directed RNA polymerase I, II, III 18 KD subunit" 40,10,0,0 "RPO26" "DNA-directed RNA polymerase I, II, III 18 KD subunit" ytybr236c - 4,5,5,0 "ABD1" "mRNA cap methyltransferase" 40,10,0,0 "ABD1" "mRNA cap methyltransferase" ytydr405w 40,16,0,0 "MRP20" "ribosomal protein of the large subunit, mitochondrial" 5,1,0,0 "MRP20" "ribosomal protein of the large subunit, mitochondrial" ytydl082w 40,3,0,0 "RPL13A" "60S large subunit ribosomal protein L13" 5,1,0,0 "RPL13A" "60S large subunit ribosomal protein L13" ytydr500c 40,3,0,0 "RPL37B" "ribosomal protein L.37.e" 5,1,0,0 "RPL37B" "ribosomal protein L.37.e" ytypr016c 40,3,0,0 "TIF6" "translation initiation factor 6 (eIF6)" 5,4,0,0 "TIF6" "translation initiation factor 6 (eIF6)" ytydr341c 40,3,0,0 "null" "arginyl-tRNA synthetase, cytosolic" 5,10,0,0 "null" "arginyl-tRNA synthetase, cytosolic" ytynl178w 40,3,0,0 "RPS3" "ribosomal protein S3.e" 5,1,0,0 "RPS3" "ribosomal protein S3.e" ytyor234c 5,1,0,0 "RPL33B" "ribosomal protein L35a.e.c15" ytyjl177w 40,3,0,0 "RPL17B" "60s large subunit ribosomal protein L17.e" 5,1,0,0 "RPL17B" "60s large subunit ribosomal protein L17.e" ytypr033c 40,10,0,0 "HTS1" "histidine--tRNA ligase, mitochondrial" 40,3,0,0 "HTS1" "histidine--tRNA ligase, mitochondrial" 5,10,0,0 "HTS1" "histidine--tRNA ligase, mitochondrial" ytybl092w 40,3,0,0 "RPL32" "60S large subunit ribosomal protein L32.e" 5,1,0,0 "RPL32" "60S large subunit ribosomal protein L32.e" ytylr382c 4,5,5,1 "NAM2" "leucine--tRNA ligase precursor, mitochondrial" 40,16,0,0 "NAM2" "leucine--tRNA ligase precursor, mitochondrial" 5,10,0,0 "NAM2" "leucine--tRNA ligase precursor, mitochondrial" ytydr283c 40,3,0,0 "GCN2" "ser/thr protein kinase" 5,7,0,0 "GCN2" "ser/thr protein kinase" ytypr132w 40,3,0,0 "RPS23B" "40S small subunit ribosomal protein S23.e" 5,1,0,0 "RPS23B" "40S small subunit ribosomal protein S23.e" ytyhl015w 40,3,0,0 "RPS20" "ribosomal protein" 5,1,0,0 "RPS20" "ribosomal protein" ytyhr019c 5,10,0,0 "DED81" "asparaginyl-tRNA-synthetase" ytykl170w 40,16,0,0 "MRPL38" "ribosomal protein of the large subunit (L14), mitochondrial" 5,1,0,0 "MRPL38" "ribosomal protein of the large subunit (L14), mitochondrial" ytygr171c 40,16,0,0 "MSM1" "methionyl-tRNA synthetase" 5,10,0,0 "MSM1" "methionyl-tRNA synthetase" ytypl131w 40,3,0,0 "RPL5" "60S large subunit ribosomal protein L5.e" 5,1,0,0 "RPL5" "60S large subunit ribosomal protein L5.e" ytyjr123w 40,3,0,0 "RPS5" "ribosomal protein S5.e" 5,1,0,0 "RPS5" "ribosomal protein S5.e" ytydr447c 40,3,0,0 "RPS17B" "ribosomal protein S17.e.B" 5,1,0,0 "RPS17B" "ribosomal protein S17.e.B" ytygl076c 40,3,0,0 "RPL7A" "60S large subunit ribosomal protein L7.e.A" 5,1,0,0 "RPL7A" "60S large subunit ribosomal protein L7.e.A" ytygr094w 40,16,0,0 "VAS1" "valyl-tRNA synthetase" 40,3,0,0 "VAS1" "valyl-tRNA synthetase" 5,10,0,0 "VAS1" "valyl-tRNA synthetase" ytynl301c 40,3,0,0 "RPL18B" "60S large subunit ribosomal protein L18.e" 5,1,0,0 "RPL18B" "60S large subunit ribosomal protein L18.e" ytyer087w 5,10,0,0 "null" "similarity to E.coli prolyl-tRNA synthetase" ytydr385w 40,3,0,0 "EFT2" "translation elongation factor eEF2" 5,4,0,0 "EFT2" "translation elongation factor eEF2" ytykl006w 40,3,0,0 "RPL14A" "ribosomal protein" 5,1,0,0 "RPL14A" "ribosomal protein" ytynl081c 5,1,0,0 "null" "similarity to ribosomal protein S13" ytybr061c - 4,5,1,4 "null" "similarity to E.coli ftsJ protein" ytynl067w 40,3,0,0 "RPL9B" "ribosomal protein L9.e.c14" 5,1,0,0 "RPL9B" "ribosomal protein L9.e.c14" ytyol120c 40,3,0,0 "RPL18A" "60S large subunit ribosomal protein S18.e" 5,1,0,0 "RPL18A" "60S large subunit ribosomal protein S18.e" ytykl009w 1,3,16,0 "MRT4" "mRNA turnover 4" 4,5,5,0 "MRT4" "mRNA turnover 4" 5,1,0,0 "MRT4" "mRNA turnover 4" ytyil018w 40,3,0,0 "RPL2B" "60S large subunit ribosomal protein L8.e" 5,1,0,0 "RPL2B" "60S large subunit ribosomal protein L8.e" ytynl262w - 3,1,3,0 "POL2" "DNA-directed DNA polymerase epsilon, catalytic subunit A" 3,1,5,1 "POL2" "DNA-directed DNA polymerase epsilon, catalytic subunit A" 3,3,1,3 "POL2" "DNA-directed DNA polymerase epsilon, catalytic subunit A" 40,10,0,0 "POL2" "DNA-directed DNA polymerase epsilon, catalytic subunit A" ytyol126c - 1,5,1,0 "MDH2" "malate dehydrogenase, cytoplasmic" 2,22,0,0 "MDH2" "malate dehydrogenase, cytoplasmic" 40,3,0,0 "MDH2" "malate dehydrogenase, cytoplasmic" ytybl080c 40,16,0,0 "PET112" "required to maintain rho+ mitochondrial DNA" 5,99,0,0 "PET112" "required to maintain rho+ mitochondrial DNA" ytydr237w 40,16,0,0 "MRPL7" "ribosomal protein of the large subunit, mitochondrial" 5,1,0,0 "MRPL7" "ribosomal protein of the large subunit, mitochondrial" ytydr172w 3,3,1,0 "SUP35" "eukaryotic peptide chain release factor GTP-binding subunit" 40,3,0,0 "SUP35" "eukaryotic peptide chain release factor GTP-binding subunit" 5,4,0,0 "SUP35" "eukaryotic peptide chain release factor GTP-binding subunit" ytydl075w 40,3,0,0 "RPL31A" "60S large subunit ribosomal protein L31.e" 5,1,0,0 "RPL31A" "60S large subunit ribosomal protein L31.e" ytyjr010w - 1,1,1,0 "MET3" "sulfate adenylyltransferase" 1,2,1,0 "MET3" "sulfate adenylyltransferase" Training Accuracy: 68/83 (81.93%) Training Frequency class '5/0/0/0': 156/1681 (9.28%) Evaluation on validation data (875 items): ytyjl190c 40,3,0,0 "RPS22A" "ribosomal protein S15a.e.c10" 5,1,0,0 "RPS22A" "ribosomal protein S15a.e.c10" ytybl076c 40,3,0,0 "ILS1" "isoleucyl-tRNA synthetase" 5,10,0,0 "ILS1" "isoleucyl-tRNA synthetase" ytyhl001w 40,3,0,0 "RPL14B" "ribosomal protein" 5,1,0,0 "RPL14B" "ribosomal protein" ytyel050c 40,16,0,0 "RML2" "ribosomal L2 protein, mitochondrial" 5,1,0,0 "RML2" "ribosomal L2 protein, mitochondrial" ytynl102w - 3,1,3,0 "POL1" "DNA-directed DNA polymerase alpha, 180 KD subunit" 40,10,0,0 "POL1" "DNA-directed DNA polymerase alpha, 180 KD subunit" ytydr012w 40,3,0,0 "RPL4B" "ribosomal protein L4.e.B" 5,1,0,0 "RPL4B" "ribosomal protein L4.e.B" ytyel054c 40,3,0,0 "RPL12A" "60S large subunit ribosomal protein L12.e" 5,1,0,0 "RPL12A" "60S large subunit ribosomal protein L12.e" ytykr084c 40,3,0,0 "HBS1" "translation elongation factor eEF-1 alpha chain homolog" 5,4,0,0 "HBS1" "translation elongation factor eEF-1 alpha chain homolog" ytyor335c 40,3,0,0 "ALA1" "alanyl-tRNA synthetase, cytosolic" 5,10,0,0 "ALA1" "alanyl-tRNA synthetase, cytosolic" ytynr037c 5,1,0,0 "RSM19" "strong similarity to Mycoplasma ribosomal protein S19" ytykl156w 40,3,0,0 "RPS27A" "ribosomal protein S27.e" 5,1,0,0 "RPS27A" "ribosomal protein S27.e" ytyhr203c 40,3,0,0 "RPS4B" "ribosomal protein S4.e.c8" 5,1,0,0 "RPS4B" "ribosomal protein S4.e.c8" ytyhl033c 40,3,0,0 "RPL8A" "60S large subunit ribosomal protein L7a.e.A" 5,1,0,0 "RPL8A" "60S large subunit ribosomal protein L7a.e.A" ytylr060w 40,3,0,0 "FRS1" "phenylalanyl-tRNA synthetase, alpha subunit, cytosolic" 5,10,0,0 "FRS1" "phenylalanyl-tRNA synthetase, alpha subunit, cytosolic" ytyol097c 40,3,0,0 "WRS1" "tryptophan--tRNA ligase" 5,10,0,0 "WRS1" "tryptophan--tRNA ligase" ytyjr047c 40,3,0,0 "ANB1" "translation initiation factor eIF5A.2" 5,4,0,0 "ANB1" "translation initiation factor eIF5A.2" ytynl302c 40,3,0,0 "RPS19B" "40S small subunit ribosomal protein S19.e" 5,1,0,0 "RPS19B" "40S small subunit ribosomal protein S19.e" ytyor196c - 1,7,1,0 "LIP5" "lipoic acid synthase" 40,16,0,0 "LIP5" "lipoic acid synthase" ytymr188c 5,1,0,0 "null" "weak similarity to bacterial ribosomal protein S17" ytygr264c 40,3,0,0 "MES1" "methionyl-tRNA synthetase" 5,10,0,0 "MES1" "methionyl-tRNA synthetase" ytygr185c 40,3,0,0 "TYS1" "tyrosyl-tRNA synthetase" 5,10,0,0 "TYS1" "tyrosyl-tRNA synthetase" ytyjr145c 40,3,0,0 "RPS4A" "ribosomal protein S4.e.c10" 5,1,0,0 "RPS4A" "ribosomal protein S4.e.c10" ytymr293c - 1,2,1,0 "null" "similarity to amidases" ytyjr139c - 1,1,1,0 "HOM6" "homoserine dehydrogenase" ytynl306w 40,16,0,0 "MRPS18" "ribosomal protein of the small subunit, mitochondrial" 5,1,0,0 "MRPS18" "ribosomal protein of the small subunit, mitochondrial" ytylr075w 3,3,1,0 "RPL10" "60S large subunit ribosomal protein" 40,3,0,0 "RPL10" "60S large subunit ribosomal protein" 5,1,0,0 "RPL10" "60S large subunit ribosomal protein" 6,10,0,0 "RPL10" "60S large subunit ribosomal protein" ytynl162w 40,3,0,0 "RPL42A" "ribosomal protein L36a.e" 5,1,0,0 "RPL42A" "ribosomal protein L36a.e" ytyol121c 40,3,0,0 "RPS19A" "40S small subunit ribosomal protein S19.e" 5,1,0,0 "RPS19A" "40S small subunit ribosomal protein S19.e" ytykl104c - 1,5,1,0 "GFA1" "glucosamine--fructose-6-phosphate transaminase" 14,4,3,3 "GFA1" "glucosamine--fructose-6-phosphate transaminase" 40,3,0,0 "GFA1" "glucosamine--fructose-6-phosphate transaminase" ytyer102w 40,3,0,0 "RPS8B" "ribosomal protein S8.e" 5,1,0,0 "RPS8B" "ribosomal protein S8.e" ytypl086c - 3,1,9,5 "ELP3" "subunit of elongator/RNAPII holoenzyme with histone acetylase activity" 6,7,0,0 "ELP3" "subunit of elongator/RNAPII holoenzyme with histone acetylase activity" ytypl167c - 3,1,3,0 "REV3" "DNA-directed DNA polymerase zeta subunit" 3,1,5,1 "REV3" "DNA-directed DNA polymerase zeta subunit" 40,10,0,0 "REV3" "DNA-directed DNA polymerase zeta subunit" ytyor133w 40,3,0,0 "EFT1" "translation elongation factor eEF2" 5,4,0,0 "EFT1" "translation elongation factor eEF2" ytygl103w 40,3,0,0 "RPL28" "60S large subunit ribosomal protein L27a.e" 5,1,0,0 "RPL28" "60S large subunit ribosomal protein L27a.e" ytypl097w 40,16,0,0 "MSY1" "tyrosyl-tRNA synthetase" 5,10,0,0 "MSY1" "tyrosyl-tRNA synthetase" ytyor150w 40,16,0,0 "MRPL23" "ribosomal protein of the large subunit, mitochondrial" 5,1,0,0 "MRPL23" "ribosomal protein of the large subunit, mitochondrial" ytypr102c 40,3,0,0 "RPL11A" "ribosomal protein L11.e" 5,1,0,0 "RPL11A" "ribosomal protein L11.e" ytylr441c 14,4,3,3 "RPS1A" "ribosomal protein S3a.e" 40,3,0,0 "RPS1A" "ribosomal protein S3a.e" 5,1,0,0 "RPS1A" "ribosomal protein S3a.e" Validation Accuracy: 31/38 (81.58%) Validation Frequency class '5/0/0/0': 69/875 (7.89%) Evaluation on propertest data (1321 items): ytynl284c 40,16,0,0 "MRPL10" "ribosomal protein of the large subunit, mitochondrial" 5,1,0,0 "MRPL10" "ribosomal protein of the large subunit, mitochondrial" ytypl198w 40,3,0,0 "RPL7B" "60S large subunit ribosomal protein" 5,1,0,0 "RPL7B" "60S large subunit ribosomal protein" ytyhl004w 40,16,0,0 "MRP4" "ribosomal protein of the small subunit, mitochondrial" 5,1,0,0 "MRP4" "ribosomal protein of the small subunit, mitochondrial" ytydr418w 40,3,0,0 "RPL12B" "60S large subunit ribosomal protein L12.e" 5,1,0,0 "RPL12B" "60S large subunit ribosomal protein L12.e" ytypr043w 40,3,0,0 "RPL43A" "ribosomal protein L37a.e" 5,1,0,0 "RPL43A" "ribosomal protein L37a.e" ytyor167c 40,3,0,0 "RPS28A" "40S small subunit ribosomal protein S28.e.c15" 5,1,0,0 "RPS28A" "40S small subunit ribosomal protein S28.e.c15" ytyjr113c 40,16,0,0 "RSM7" "similarity to bacterial, chloroplast and mitochondrial ribosomal protein S7" 5,1,0,0 "RSM7" "similarity to bacterial, chloroplast and mitochondrial ribosomal protein S7" ytypl220w 40,3,0,0 "RPL1A" "ribosomal protein" 5,1,0,0 "RPL1A" "ribosomal protein" ytyll045c 40,3,0,0 "RPL8B" "60s large subunit ribosomal protein L7a.e.B" 5,1,0,0 "RPL8B" "60s large subunit ribosomal protein L7a.e.B" ytypl143w 40,3,0,0 "RPL33A" "ribosomal protein L35a.e.c16" 5,1,0,0 "RPL33A" "ribosomal protein L35a.e.c16" ytynl072w - 1,3,16,0 "RNH35" "RNase H(35), a 35 kDa ribonuclease H" ytynl073w 40,16,0,0 "MSK1" "lysyl-tRNA synthetase, mitochondrial" 5,10,0,0 "MSK1" "lysyl-tRNA synthetase, mitochondrial" ytymr121c 40,3,0,0 "RPL15B" "60S large subunit ribosomal protein L15.e.c13" 5,1,0,0 "RPL15B" "60S large subunit ribosomal protein L15.e.c13" ytyml024w 40,3,0,0 "RPS17A" "ribosomal protein S17.e.A" 5,1,0,0 "RPS17A" "ribosomal protein S17.e.A" ytybl038w 40,16,0,0 "MRPL16" "ribosomal protein of the large subunit, mitochondrial" 5,1,0,0 "MRPL16" "ribosomal protein of the large subunit, mitochondrial" ytyml025c 40,16,0,0 "YML6" "ribosomal protein, mitochondrial" 5,1,0,0 "YML6" "ribosomal protein, mitochondrial" ytyol033w 40,16,0,0 "MSE1" "glutamyl-tRNA synthetase, mitochondrial" 5,10,0,0 "MSE1" "glutamyl-tRNA synthetase, mitochondrial" ytydl208w - 4,1,4,0 "NHP2" "nucleolar rRNA processing protein" 40,10,0,0 "NHP2" "nucleolar rRNA processing protein" ytybl072c 40,3,0,0 "RPS8A" "ribosomal protein S8.e" 5,1,0,0 "RPS8A" "ribosomal protein S8.e" ytylr264w 40,3,0,0 "RPS28B" "40S small subunit ribosomal protein S28.e.c12" 5,1,0,0 "RPS28B" "40S small subunit ribosomal protein S28.e.c12" ytymr142c 40,3,0,0 "RPL13B" "60S large subunit ribosomal protein" 5,1,0,0 "RPL13B" "60S large subunit ribosomal protein" ytylr185w 40,3,0,0 "RPL37A" "ribosomal protein L37.e" 5,1,0,0 "RPL37A" "ribosomal protein L37.e" ytydl083c 40,3,0,0 "RPS16B" "ribosomal protein S16.e" 5,1,0,0 "RPS16B" "ribosomal protein S16.e" ytymr143w 40,3,0,0 "RPS16A" "ribosomal protein S16.e" 5,1,0,0 "RPS16A" "ribosomal protein S16.e" ytypl266w - 4,1,4,0 "DIM1" "rRNA (adenine-N6,N6-)-dimethyltransferase" 40,10,0,0 "DIM1" "rRNA (adenine-N6,N6-)-dimethyltransferase" ytyel026w - 4,5,5,1 "SNU13" "component of the U4/U6.U5 snRNP" ytyjl191w 40,3,0,0 "RPS14B" "40S small subunit ribosomal protein S14.e.B" 5,1,0,0 "RPS14B" "40S small subunit ribosomal protein S14.e.B" ytyml063w 40,3,0,0 "RPS1B" "ribosomal protein S3a.e" 5,1,0,0 "RPS1B" "ribosomal protein S3a.e" ytyor076c - 1,3,16,1 "SKI7" "GTPase with function in 3'-to-5' degradation of mRNA" ytygl135w 40,3,0,0 "RPL1B" "60S large subunit ribosomal protein" 5,1,0,0 "RPL1B" "60S large subunit ribosomal protein" ytylr367w 40,3,0,0 "RPS22B" "ribosomal protein S15a.e.c12" 5,1,0,0 "RPS22B" "ribosomal protein S15a.e.c12" ytynl040w - 1,6,4,0 "null" "weak similarity to M.genitalium alanine--tRNA ligase" ytydr268w 40,16,0,0 "MSW1" "tryptophanyl-tRNA synthetase, mitochondrial" 5,10,0,0 "MSW1" "tryptophanyl-tRNA synthetase, mitochondrial" ytyll018c 40,3,0,0 "DPS1" "aspartyl-tRNA synthetase, cytosolic" 5,10,0,0 "DPS1" "aspartyl-tRNA synthetase, cytosolic" ytyor095c - 1,5,1,0 "RKI1" "D-ribose-5-phosphate ketol-isomerase" 2,7,0,0 "RKI1" "D-ribose-5-phosphate ketol-isomerase" 40,3,0,0 "RKI1" "D-ribose-5-phosphate ketol-isomerase" ytylr289w 5,4,0,0 "GUF1" "strong similarity to E. coli elongation factor-type GTP-binding protein lepa" ytykl173w 5,4,0,0 "SNU114" "U5 snRNP-specific protein" ytyjl125c 5,7,0,0 "GCD14" "translational repressor of GCN4" 6,7,0,0 "GCD14" "translational repressor of GCN4" ytyjr049c - 13,1,1,1 "UTR1" "associated with ferric reductase activity" ytydr037w 40,3,0,0 "KRS1" "lysyl-tRNA synthetase, cytosolic" 5,10,0,0 "KRS1" "lysyl-tRNA synthetase, cytosolic" ytybl027w 40,3,0,0 "RPL19B" "60S large subunit ribosomal protein L19.e" 5,1,0,0 "RPL19B" "60S large subunit ribosomal protein L19.e" ytyhr070w - 1,1,1,0 "TRM5" "strong similarity to N.crassa met-10+ protein" ytykl194c 40,16,0,0 "MST1" "threonine--tRNA ligase, mitochondrial" 5,10,0,0 "MST1" "threonine--tRNA ligase, mitochondrial" ytymr286w 40,16,0,0 "MRPL33" "ribosomal protein of the large subunit, mitochondrial" 5,1,0,0 "MRPL33" "ribosomal protein of the large subunit, mitochondrial" ytypl090c 40,3,0,0 "RPS6A" "ribosomal protein S6.e" 5,1,0,0 "RPS6A" "ribosomal protein S6.e" ytyol040c 40,3,0,0 "RPS15" "40S small subunit ribosomal protein" 5,1,0,0 "RPS15" "40S small subunit ribosomal protein" ytynl163c 5,4,0,0 "RIA1" "translation elongation factor eEF4" ytynl069c 40,3,0,0 "RPL16B" "60S large subunit ribosomal protein" 5,1,0,0 "RPL16B" "60S large subunit ribosomal protein" ytybr048w 40,3,0,0 "RPS11B" "ribosomal protein S11.e.B" 5,1,0,0 "RPS11B" "ribosomal protein S11.e.B" ytyhr091c 40,16,0,0 "MSR1" "arginyl-tRNA synthetase, mitochondrial" 5,10,0,0 "MSR1" "arginyl-tRNA synthetase, mitochondrial" ytyor063w 40,3,0,0 "RPL3" "60S large subunit ribosomal protein L3.e" 5,1,0,0 "RPL3" "60S large subunit ribosomal protein L3.e" ytyol127w 40,3,0,0 "RPL25" "ribosomal protein L23a.e" 5,1,0,0 "RPL25" "ribosomal protein L23a.e" ytynl185c 40,16,0,0 "MRPL19" "ribosomal protein of the large subunit, mitochondrial" 5,1,0,0 "MRPL19" "ribosomal protein of the large subunit, mitochondrial" Propertest Accuracy: 44/53 (83.02%) Propertest Frequency class '5/0/0/0': 126/1321 (9.54%) New (unknown) data (875 items): ytydr336w - 99,0,0,0 "null" "weak similarity to B.subtilis hypothetical protein X" ytymr315w - 99,0,0,0 "null" "similarity to hypothetical S. pombe protein" ytymr158w - 99,0,0,0 "null" "weak similarity to E.coli ribosomal S8 protein" ytyer175c - 99,0,0,0 "TMT1" "similarity to hypothetical protein YHR209w" ytydl201w - 99,0,0,0 "null" "strong similarity to probable methyltransferase related protein Neurospora crassa" ytyml005w - 99,0,0,0 "null" "similarity to hypothetical S.pombe protein" ytyjr072c - 99,0,0,0 "null" "strong similarity to C.elegans hypothetical protein and similarity to YLR243w" ytybl057c - 99,0,0,0 "null" "strong similarity to hypothetical S.pombe protein" ytyel041w - 99,0,0,0 "null" "strong similarity to UTR1P" ytynl022c - 99,0,0,0 "null" "weak similarity to C.burnetii FMU protein" ytylr285w - 99,0,0,0 "null" "weak similarity to A.thaliana hypothetical protein" ytymr085w - 99,0,0,0 "null" "strong similarity to GFA1P - putative pseudogene" ytybr025c - 99,0,0,0 "null" "strong similarity to Ylf1p" ytyhr052w - 99,0,0,0 "CIC1" "adaptor protein specifically linking the 26S proteasome to its substrate, the SCF component CDC4" ytyjl046w - 99,0,0,0 "null" "similarity to E.coli lipoate-protein ligase A" ytypl157w - 99,0,0,0 "null" "weak similarity to S.pombe hypothetical protein SPAC2G11.15c" ytyil110w - 99,0,0,0 "null" "weak similarity to hypothetical C.elegans protein" ------------------