Rule 449: eval(_1,_2,gte1.1),classification(_2,cricetulus) = 0 eval(_1,_2,b0.0_1.0e-8),classification(_2,cricetulus) = 0 yeast_to_yeast(_1,_2,b3.3e-2_0.73),eval(_1,_3,b0.0_1.0e-8),classification(_3,ustilago) = 0 eval(_1,_2,gte1.1),classification(_2,lagomorpha),keyword(_2,transmembrane) = 0 eval(_1,_2,b0.0_1.0e-8),classification(_2,mycoplasma),db_ref(_2,hssp) = 1 eval(_1,_2,b0.0_1.0e-8),classification(_2,lactobacillus),db_ref(_2,pfam) = 1 -> class 1/5/1/0 "C-compound and carbohydrate utilization" Evaluation on training data (1131 items): ytydl022w 1,5,1,0 "GPD1" "glycerol-3-phosphate dehydrogenase (NAD+), cytoplasmic" 11,1,0,0 "GPD1" "glycerol-3-phosphate dehydrogenase (NAD+), cytoplasmic" 13,11,3,13 "GPD1" "glycerol-3-phosphate dehydrogenase (NAD+), cytoplasmic" 40,3,0,0 "GPD1" "glycerol-3-phosphate dehydrogenase (NAD+), cytoplasmic" ytykl085w 1,5,1,0 "MDH1" "malate dehydrogenase precursor, mitochondrial" 2,10,0,0 "MDH1" "malate dehydrogenase precursor, mitochondrial" 40,16,0,0 "MDH1" "malate dehydrogenase precursor, mitochondrial" ytyor347c 1,5,1,0 "PYK2" "pyruvate kinase, glucose-repressed isoform" 2,1,0,0 "PYK2" "pyruvate kinase, glucose-repressed isoform" ytygr087c 1,5,1,0 "PDC6" "pyruvate decarboxylase 3" 2,16,0,0 "PDC6" "pyruvate decarboxylase 3" 40,3,0,0 "PDC6" "pyruvate decarboxylase 3" ytybr019c 1,5,1,0 "GAL10" "UDP-glucose 4-epimerase" 40,3,0,0 "GAL10" "UDP-glucose 4-epimerase" ytybr117c 1,1,1,0 "TKL2" "transketolase 2" 1,5,1,0 "TKL2" "transketolase 2" 2,7,0,0 "TKL2" "transketolase 2" 40,3,0,0 "TKL2" "transketolase 2" ytycr012w 1,5,1,0 "PGK1" "phosphoglycerate kinase" 2,1,0,0 "PGK1" "phosphoglycerate kinase" 40,3,0,0 "PGK1" "phosphoglycerate kinase" ytyel020c 1,5,1,0 "null" "similarity to O.formigenes oxalyl-CoA decarboxylase" 2,99,0,0 "null" "similarity to O.formigenes oxalyl-CoA decarboxylase" ytymr205c 1,5,1,0 "PFK2" "6-phosphofructokinase, beta subunit" 1,5,4,0 "PFK2" "6-phosphofructokinase, beta subunit" 2,1,0,0 "PFK2" "6-phosphofructokinase, beta subunit" 40,3,0,0 "PFK2" "6-phosphofructokinase, beta subunit" ytymr303c 1,5,1,0 "ADH2" "alcohol dehydrogenase II" 2,16,0,0 "ADH2" "alcohol dehydrogenase II" 40,3,0,0 "ADH2" "alcohol dehydrogenase II" ytypl113c 1,5,1,0 "null" "similarity to glycerate dehydrogenases" ytyhl032c 1,5,1,0 "GUT1" "glycerol kinase" ytydr380w 1,5,1,0 "ARO10" "similarity to PDC6P, THI3P and to pyruvate decarboxylases" 2,16,0,0 "ARO10" "similarity to PDC6P, THI3P and to pyruvate decarboxylases" ytylr134w 1,5,1,0 "PDC5" "pyruvate decarboxylase, isozyme 2" 2,16,0,0 "PDC5" "pyruvate decarboxylase, isozyme 2" 40,3,0,0 "PDC5" "pyruvate decarboxylase, isozyme 2" ytygr194c 1,5,1,0 "XKS1" "xylulokinase" ytyol126c 1,5,1,0 "MDH2" "malate dehydrogenase, cytoplasmic" 2,22,0,0 "MDH2" "malate dehydrogenase, cytoplasmic" 40,3,0,0 "MDH2" "malate dehydrogenase, cytoplasmic" Training Accuracy: 16/16 (100.00%) Training Frequency class '1/5/1/0': 112/1131 (9.90%) Evaluation on validation data (588 items): ytydl078c 1,5,1,0 "MDH3" "malate dehydrogenase, peroxisomal" 1,6,7,0 "MDH3" "malate dehydrogenase, peroxisomal" 2,99,0,0 "MDH3" "malate dehydrogenase, peroxisomal" 40,19,0,0 "MDH3" "malate dehydrogenase, peroxisomal" ytyil125w 1,5,1,0 "KGD1" "2-oxoglutarate dehydrogenase complex E1 component" 2,10,0,0 "KGD1" "2-oxoglutarate dehydrogenase complex E1 component" 40,16,0,0 "KGD1" "2-oxoglutarate dehydrogenase complex E1 component" ytyal038w 1,5,1,0 "CDC19" "pyruvate kinase" 2,1,0,0 "CDC19" "pyruvate kinase" 40,3,0,0 "CDC19" "pyruvate kinase" ytylr044c 1,5,1,0 "PDC1" "pyruvate decarboxylase, isozyme 1" 2,13,0,0 "PDC1" "pyruvate decarboxylase, isozyme 1" 2,16,0,0 "PDC1" "pyruvate decarboxylase, isozyme 1" 40,3,0,0 "PDC1" "pyruvate decarboxylase, isozyme 1" ytybr026c - 4,5,1,4 "(MRF1)" "mitochondrial respiratory function protein" 40,10,0,0 "(MRF1)" "mitochondrial respiratory function protein" ytydl114w - 3,3,2,0 "null" "weak similarity to Rhizobium nodulation protein nodG" ytygr192c 1,5,1,0 "TDH3" "glyceraldehyde-3-phosphate dehydrogenase 3" 2,1,0,0 "TDH3" "glyceraldehyde-3-phosphate dehydrogenase 3" 40,3,0,0 "TDH3" "glyceraldehyde-3-phosphate dehydrogenase 3" ytygl001c - 1,6,1,0 "ERG26" "C-3 sterol dehydrogenase (C-4 decarboxylase)" ytyjr137c - 1,1,1,0 "ECM17" "involved in cell wall biogenesis and architecture" 1,2,1,0 "ECM17" "involved in cell wall biogenesis and architecture" 30,1,0,0 "ECM17" "involved in cell wall biogenesis and architecture" ytybr132c - 1,1,7,0 "AGP2" "amino-acid permease" 67,10,0,0 "AGP2" "amino-acid permease" ytymr108w - 1,1,1,0 "ILV2" "acetolactate synthase" 40,16,0,0 "ILV2" "acetolactate synthase" ytyer023w - 1,1,1,0 "PRO3" "delta 1-pyrroline-5-carboxylate reductase" 40,3,0,0 "PRO3" "delta 1-pyrroline-5-carboxylate reductase" Validation Accuracy: 5/12 (41.67%) Validation Frequency class '1/5/1/0': 57/588 (9.69%) Evaluation on propertest data (891 items): ytyjl088w - 1,1,1,0 "ARG3" "ornithine carbamoyltransferase" 40,3,0,0 "ARG3" "ornithine carbamoyltransferase" ytymr217w - 1,3,1,0 "GUA1" "GMP synthase (glutamine-hydrolyzing)" ytyil124w 1,5,1,0 "AYR1" "1-Acyldihydroxyacetone-phosphate reductase" 14,4,3,5 "AYR1" "1-Acyldihydroxyacetone-phosphate reductase" ytybr159w - 1,6,1,0 "null" "similarity to human 17-beta-hydroxysteroid dehydrogenase" ytykl055c - 1,6,99,0 "OAR1" "putative 3-oxoacyl-(acyl carrier protein) reductase" 2,13,0,0 "OAR1" "putative 3-oxoacyl-(acyl carrier protein) reductase" ytyol059w 1,5,1,0 "GPD2" "glycerol-3-phosphate dehydrogenase (NAD+), mitochondrial" 40,16,0,0 "GPD2" "glycerol-3-phosphate dehydrogenase (NAD+), mitochondrial" ytymr083w 1,5,1,0 "ADH3" "alcohol dehydrogenase III" 40,16,0,0 "ADH3" "alcohol dehydrogenase III" ytygl062w 1,5,1,0 "PYC1" "pyruvate carboxylase 1" 2,1,0,0 "PYC1" "pyruvate carboxylase 1" 40,3,0,0 "PYC1" "pyruvate carboxylase 1" ytybr265w - 1,6,1,0 "TSC10" "3-ketosphinganine reductase" 40,7,0,0 "TSC10" "3-ketosphinganine reductase" ytyol086c 1,5,1,0 "ADH1" "alcohol dehydrogenase I" 2,16,0,0 "ADH1" "alcohol dehydrogenase I" 40,3,0,0 "ADH1" "alcohol dehydrogenase I" ytydr541c - 1,7,99,0 "null" "similarity to dihydroflavonol-4-reductases" ytydr050c 1,5,1,0 "TPI1" "triose-phosphate isomerase" 2,1,0,0 "TPI1" "triose-phosphate isomerase" 40,3,0,0 "TPI1" "triose-phosphate isomerase" ytypr074c 1,1,1,0 "TKL1" "transketolase 1" 1,5,1,0 "TKL1" "transketolase 1" 2,7,0,0 "TKL1" "transketolase 1" 40,3,0,0 "TKL1" "transketolase 1" ytyjl052w 1,5,1,0 "TDH1" "glyceraldehyde-3-phosphate dehydrogenase 1" 2,1,0,0 "TDH1" "glyceraldehyde-3-phosphate dehydrogenase 1" 40,3,0,0 "TDH1" "glyceraldehyde-3-phosphate dehydrogenase 1" ytyhr063c - 1,7,1,0 "PAN5" "weak similarity to translational activator CBS2" ytyer178w 1,5,1,0 "PDA1" "pyruvate dehydrogenase (lipoamide) alpha chain precursor" 2,1,0,0 "PDA1" "pyruvate dehydrogenase (lipoamide) alpha chain precursor" 40,16,0,0 "PDA1" "pyruvate dehydrogenase (lipoamide) alpha chain precursor" ytybr127c - 13,1,1,3 "VMA2" "H+-ATPase V1 domain 60 KD subunit, vacuolar" 40,25,0,0 "VMA2" "H+-ATPase V1 domain 60 KD subunit, vacuolar" 67,4,1,2 "VMA2" "H+-ATPase V1 domain 60 KD subunit, vacuolar" 67,50,22,0 "VMA2" "H+-ATPase V1 domain 60 KD subunit, vacuolar" 8,13,0,0 "VMA2" "H+-ATPase V1 domain 60 KD subunit, vacuolar" ytyir036c 1,5,1,0 "null" "similarity to E.coli fabD" ytydl080c - 1,1,10,0 "THI3" "positive regulation factor of thiamin metabolism" 1,7,7,0 "THI3" "positive regulation factor of thiamin metabolism" 4,5,1,4 "THI3" "positive regulation factor of thiamin metabolism" ytyer043c - 1,7,1,0 "SAH1" "S-adenosyl-L-homocysteine hydrolase" ytyhr183w 1,5,1,0 "GND1" "6-phosphogluconate dehydrogenase" 2,7,0,0 "GND1" "6-phosphogluconate dehydrogenase" 40,3,0,0 "GND1" "6-phosphogluconate dehydrogenase" Propertest Accuracy: 11/21 (52.38%) Propertest Frequency class '1/5/1/0': 92/891 (10.33%) New (unknown) data (588 items): ytymr090w - 99,0,0,0 "null" "strong similarity to B. subtilis conserved hypothetical protein yhfK" ytylr426w - 99,0,0,0 "null" "weak similarity to 3-oxoacyl-[acyl-carrier-protein] reductase from E. coli" ytymr226c - 98,0,0,0 "null" "similarity to ketoreductases" ytypl033c - 99,0,0,0 "null" "weak similarity to YLR426w" ytynl181w - 99,0,0,0 "null" "similarity to hypothetical S. pombe protein" ytydr109c - 99,0,0,0 "null" "similarity to MPA43P" ytyer004w - 99,0,0,0 "null" "similarity to hypothetical E.coli and C.elegans proteins" ytykl107w - 99,0,0,0 "null" "weak similarity to S.antibioticus probable oxidoreductase" ------------------ Rule 512: eval(_1,_2,b1.0e-8_4.0e-4),sq_len(_2,b344_483),classification(_2,mus) = 0 eval(_1,_2,b0.0_1.0e-8),classification(_2,anopheles),keyword(_2,transmembrane) = 1 eval(_1,_2,b0.0_1.0e-8),classification(_2,arabidopsis),db_ref(_2,pir) = 0 eval(_1,_2,b0.0_1.0e-8),sq_len(_2,b16_344),classification(_2,streptococcaceae) = 1 -> class 67/50/25/0 "ABC transporters" Evaluation on training data (1131 items): ytynl014w 5,4,0,0 "HEF3" "translation elongation factor eEF3 homolog" 67,50,25,0 "HEF3" "translation elongation factor eEF3 homolog" ytykl209c 14,4,3,3 "STE6" "ATP-binding cassette transporter protein" 40,2,0,0 "STE6" "ATP-binding cassette transporter protein" 67,50,25,0 "STE6" "ATP-binding cassette transporter protein" 8,16,0,0 "STE6" "ATP-binding cassette transporter protein" ytydr004w - 14,4,3,3 "RAD57" "DNA repair protein" 3,1,5,1 "RAD57" "DNA repair protein" 3,3,2,0 "RAD57" "DNA repair protein" 40,10,0,0 "RAD57" "DNA repair protein" ytyor011w 67,50,25,0 "AUS1" "strong similarity to ATP-dependent permeases" ytyll048c 1,6,13,0 "YBT1" "yeast bile transporter" 40,25,0,0 "YBT1" "yeast bile transporter" 67,50,25,0 "YBT1" "yeast bile transporter" ytydr061w - 3,1,5,1 "null" "similarity to E.coli modF and photorepair protein phrA" ytygr281w 40,2,0,0 "YOR1" "ATP-binding cassette transporter protein" 67,28,0,0 "YOR1" "ATP-binding cassette transporter protein" 67,50,25,0 "YOR1" "ATP-binding cassette transporter protein" ytykl188c 1,6,13,0 "PXA2" "ABC transporter, peroxisomal" 40,19,0,0 "PXA2" "ABC transporter, peroxisomal" 67,13,0,0 "PXA2" "ABC transporter, peroxisomal" 67,50,25,0 "PXA2" "ABC transporter, peroxisomal" 8,10,0,0 "PXA2" "ABC transporter, peroxisomal" ytylr188w 67,50,25,0 "MDL1" "ATP-binding cassette transporter family member" ytydr011w 1,6,13,0 "SNQ2" "multidrug resistance protein" 11,7,0,0 "SNQ2" "multidrug resistance protein" 13,1,1,1 "SNQ2" "multidrug resistance protein" 40,2,0,0 "SNQ2" "multidrug resistance protein" 67,4,1,2 "SNQ2" "multidrug resistance protein" 67,50,25,0 "SNQ2" "multidrug resistance protein" ytyol075c 67,50,25,0 "null" "similarity to A.gambiae ATP-binding-cassette protein" ytyhl035c 67,50,25,0 "null" "similarity to multidrug resistance proteins" ytyfl028c - 4,5,1,4 "CAF16" "ATP-binding cassette transporter family member" ytypl058c 67,50,25,0 "PDR12" "multidrug resistance transporter" ytyil013c 40,2,0,0 "PDR11" "membrane transporter" 67,28,0,0 "PDR11" "membrane transporter" 67,50,25,0 "PDR11" "membrane transporter" ytykr104w 11,7,0,0 "null" "similarity to multidrug resistance proteins" 67,50,25,0 "null" "similarity to multidrug resistance proteins" ytydr091c 67,50,25,0 "RLI1" "strong similarity to human RNase L inhibitor and M.jannaschii ABC transporter protein" ytyer036c 67,50,25,0 "KRE30" "strong similarity to members of the ABC transporter family" Training Accuracy: 15/18 (83.33%) Training Frequency class '67/50/25/0': 16/1131 (1.41%) Evaluation on validation data (588 items): ytydr248c - 1,5,1,0 "null" "strong similarity to E.coli thermoresistant gluconokinase" ytyll015w 11,7,0,0 "BPT1" "similarity to YCF1P, YOR1P, rat organic anion transporter" 67,50,25,0 "BPT1" "similarity to YCF1P, YOR1P, rat organic anion transporter" ytynr070w 11,7,0,0 "null" "strong similarity to SNQ2P" 67,50,25,0 "null" "strong similarity to SNQ2P" ytypl226w 5,4,0,0 "NEW1" "similarity to translation elongation factor eEF3" 67,50,25,0 "NEW1" "similarity to translation elongation factor eEF3" Validation Accuracy: 3/4 (75.00%) Validation Frequency class '67/50/25/0': 5/588 (0.85%) Evaluation on propertest data (891 items): ytydr020c - 1,3,1,0 "null" "weak similarity to uridine kinases and phosphoribulokinases" ytypl147w 1,6,13,0 "PXA1" "long-chain fatty acid transporter" 40,19,0,0 "PXA1" "long-chain fatty acid transporter" 67,13,0,0 "PXA1" "long-chain fatty acid transporter" 67,50,25,0 "PXA1" "long-chain fatty acid transporter" 8,10,0,0 "PXA1" "long-chain fatty acid transporter" ytykr103w 11,7,0,0 "null" "similarity to multidrug resistance proteins" 67,50,25,0 "null" "similarity to multidrug resistance proteins" ytydr135c 11,7,0,0 "YCF1" "glutathione S-conjugate transporter, vacuolar" 40,25,0,0 "YCF1" "glutathione S-conjugate transporter, vacuolar" 67,50,25,0 "YCF1" "glutathione S-conjugate transporter, vacuolar" 8,13,0,0 "YCF1" "glutathione S-conjugate transporter, vacuolar" ytypl270w 67,50,25,0 "MDL2" "ATP-binding cassette (ABC) transporter family member" ytymr301c 13,1,1,1 "ATM1" "ATP-binding cassette transporter protein, mitochondrial" 40,16,0,0 "ATM1" "ATP-binding cassette transporter protein, mitochondrial" 67,50,25,0 "ATM1" "ATP-binding cassette transporter protein, mitochondrial" 8,4,0,0 "ATM1" "ATP-binding cassette transporter protein, mitochondrial" ytydr406w 67,50,25,0 "PDR15" "ATP-binding cassette transporter family member" Propertest Accuracy: 6/7 (85.71%) Propertest Frequency class '67/50/25/0': 7/891 (0.79%) New (unknown) data (588 items): ytydl166c - 99,0,0,0 "null" "weak similarity to Pyrococcus horikoshii hypothetical protein PHBJ019" ------------------