Rule 418: seq_aa_rat_pair_w_h <= 0 seq_transmembraneSpans = 0 ss(_1,_2,b),beta_len(_2,b4_6),alpha_dist(_1,gte47.6),nss(_2,_3,a) = 0 ss(_1,_2,c),coil_len(_2,gte10),alpha_dist(_1,b36.2_47.6),nss(_2,_3,b),nss(_3,_4,a) = 0 ss(_1,_2,c),coil_len(_2,b3_4),alpha_dist(_1,b17.9_27.5),coil_dist(_1,gte57.6),nss(_2,_3,a) = 0 ss(_1,_2,b),ss(_1,_3,a),alpha_len(_3,b10_14),alpha_dist(_1,b27.5_36.2),nss(_2,_3,a) = 0 ss(_1,_2,b),ss(_1,_3,a),alpha_len(_3,b3_6),beta_len(_2,b3_4),alpha_dist(_1,b36.2_47.6) = 0 ss(_1,_2,a),ss(_1,_3,a),alpha_len(_2,gte14),alpha_dist(_1,b0.0_17.9),coil_dist(_1,gte57.6) = 0 seq_cai > 0.59 -> class 5/0/0/0 "PROTEIN SYNTHESIS" Evaluation on training data (1706 items): ytyer131w 40,3,0,0 "RPS26B" "40S small subunit ribosomal protein S26e-c5" 5,1,0,0 "RPS26B" "40S small subunit ribosomal protein S26e-c5" ytyel034w 1,3,16,0 "HYP2" "translation initiation factor eIF5A.1" 40,3,0,0 "HYP2" "translation initiation factor eIF5A.1" 5,4,0,0 "HYP2" "translation initiation factor eIF5A.1" ytyer117w 40,3,0,0 "RPL23B" "ribosomal protein L23.e" 5,1,0,0 "RPL23B" "ribosomal protein L23.e" ytyil052c 40,3,0,0 "RPL34B" "ribosomal protein L34.e" 5,1,0,0 "RPL34B" "ribosomal protein L34.e" ytybr181c 40,3,0,0 "RPS6B" "ribosomal protein S6.e" 5,1,0,0 "RPS6B" "ribosomal protein S6.e" ytyil133c 40,3,0,0 "RPL16A" "60S large subunit ribosomal protein" 5,1,0,0 "RPL16A" "60S large subunit ribosomal protein" ytyfr032c-a 40,3,0,0 "RPL29" "60S large subunit ribosomal protein" 5,1,0,0 "RPL29" "60S large subunit ribosomal protein" ytyhr021c 40,3,0,0 "RPS27B" "ribosomal protein S27.e" 5,1,0,0 "RPS27B" "ribosomal protein S27.e" ytybl087c 40,3,0,0 "RPL23A" "60S large subunit ribosomal protein L23.e" 5,1,0,0 "RPL23A" "60S large subunit ribosomal protein L23.e" ytydl191w 40,3,0,0 "RPL35A" "60S large subunit ribosomal protein" 5,1,0,0 "RPL35A" "60S large subunit ribosomal protein" ytyor182c 40,3,0,0 "RPS30B" "ribosomal protein S30" 5,1,0,0 "RPS30B" "ribosomal protein S30" ytygr148c 40,3,0,0 "RPL24B" "60S large subunit ribosomal protein L24.e.B" 5,1,0,0 "RPL24B" "60S large subunit ribosomal protein L24.e.B" ytydr450w 40,3,0,0 "RPS18A" "ribosomal protein S18.e.c4" 5,1,0,0 "RPS18A" "ribosomal protein S18.e.c4" ytylr029c 40,3,0,0 "RPL15A" "60s large subunit ribosomal protein L15.e.c12" 5,1,0,0 "RPL15A" "60s large subunit ribosomal protein L15.e.c12" ytygl147c 40,3,0,0 "RPL9A" "ribosomal protein L9.e" 5,1,0,0 "RPL9A" "ribosomal protein L9.e" ytybr189w 40,3,0,0 "RPS9B" "ribosomal protein S9.e.B" 5,1,0,0 "RPS9B" "ribosomal protein S9.e.B" ytydr025w 40,3,0,0 "RPS11A" "ribosomal protein S11.e" 5,1,0,0 "RPS11A" "ribosomal protein S11.e" ytybr031w 40,3,0,0 "RPL4A" "ribosomal protein" 5,1,0,0 "RPL4A" "ribosomal protein" ytykl180w 40,3,0,0 "RPL17A" "ribosomal protein L17.e" 5,1,0,0 "RPL17A" "ribosomal protein L17.e" ytylr061w 5,1,0,0 "RPL22A" "ribosomal protein" ytylr048w 40,3,0,0 "RPS0B" "40S ribosomal protein p40 homolog B" 5,1,0,0 "RPS0B" "40S ribosomal protein p40 homolog B" 6,10,0,0 "RPS0B" "40S ribosomal protein p40 homolog B" ytypr080w 40,3,0,0 "TEF1" "translation elongation factor eEF1 alpha-A chain, cytosolic" 5,4,0,0 "TEF1" "translation elongation factor eEF1 alpha-A chain, cytosolic" ytybr084c-a 40,3,0,0 "RPL19A" "60S large subunit ribosomal protein L19.e" 5,1,0,0 "RPL19A" "60S large subunit ribosomal protein L19.e" ytyhr141c 40,3,0,0 "RPL42B" "ribosomal protein L36a.e" 5,1,0,0 "RPL42B" "ribosomal protein L36a.e" ytyer056c-a 40,3,0,0 "RPL34A" "ribosomal protein L34" 5,1,0,0 "RPL34A" "ribosomal protein L34" ytyor369c 40,3,0,0 "RPS12" "40S small subunit acidic ribosomal protein S12" 5,1,0,0 "RPS12" "40S small subunit acidic ribosomal protein S12" ytydl061c 40,3,0,0 "RPS29B" "ribosomal protein S29.e.B" 5,1,0,0 "RPS29B" "ribosomal protein S29.e.B" ytydr064w 40,3,0,0 "RPS13" "ribosomal protein" 5,1,0,0 "RPS13" "ribosomal protein" ytyml026c 40,3,0,0 "RPS18B" "ribosomal protein S18.e.c13" 5,1,0,0 "RPS18B" "ribosomal protein S18.e.c13" ytylr406c 40,3,0,0 "RPL31B" "60S large subunit ribosomal protein L31.e.c12" 5,1,0,0 "RPL31B" "60S large subunit ribosomal protein L31.e.c12" ytylr340w 40,3,0,0 "RPP0" "acidic ribosomal protein L10.e" 5,1,0,0 "RPP0" "acidic ribosomal protein L10.e" ytygl189c 40,3,0,0 "RPS26A" "40S small subunit ribosomal protein S26e.c7" 5,1,0,0 "RPS26A" "40S small subunit ribosomal protein S26e.c7" ytyal003w 40,3,0,0 "EFB1" "translation elongation factor eEF1beta" 5,4,2,0 "EFB1" "translation elongation factor eEF1beta" ytylr167w 40,3,0,0 "RPS31" "ubiquitin/40S small subunit ribosomal protein" 5,1,0,0 "RPS31" "ubiquitin/40S small subunit ribosomal protein" 6,13,1,0 "RPS31" "ubiquitin/40S small subunit ribosomal protein" ytygl030w 40,3,0,0 "RPL30" "60S large subunit ribosomal protein L30.e" 5,1,0,0 "RPL30" "60S large subunit ribosomal protein L30.e" ytylr344w 40,3,0,0 "RPL26A" "60S large subunit ribosomal protein" 5,1,0,0 "RPL26A" "60S large subunit ribosomal protein" ytydl082w 40,3,0,0 "RPL13A" "60S large subunit ribosomal protein L13" 5,1,0,0 "RPL13A" "60S large subunit ribosomal protein L13" ytydr500c 40,3,0,0 "RPL37B" "ribosomal protein L.37.e" 5,1,0,0 "RPL37B" "ribosomal protein L.37.e" ytyor312c 40,3,0,0 "RPL20B" "60S large subunit ribosomal protein" 5,1,0,0 "RPL20B" "60S large subunit ribosomal protein" ytydl229w 40,3,0,0 "SSB1" "heat shock protein of HSP70 family" 5,99,0,0 "SSB1" "heat shock protein of HSP70 family" ytynl178w 40,3,0,0 "RPS3" "ribosomal protein S3.e" 5,1,0,0 "RPS3" "ribosomal protein S3.e" ytyhr010w 40,3,0,0 "RPL27A" "60S large subunit ribosomal protein L27.e" 5,1,0,0 "RPL27A" "60S large subunit ribosomal protein L27.e" ytyor234c 5,1,0,0 "RPL33B" "ribosomal protein L35a.e.c15" ytygr214w 14,4,3,1 "RPS0A" "40S ribosomal protein p40 homolog A" 40,3,0,0 "RPS0A" "40S ribosomal protein p40 homolog A" 5,1,0,0 "RPS0A" "40S ribosomal protein p40 homolog A" 6,10,0,0 "RPS0A" "40S ribosomal protein p40 homolog A" ytykr057w 40,3,0,0 "RPS21A" "ribosomal protein S21.e" 5,1,0,0 "RPS21A" "ribosomal protein S21.e" ytyjl177w 40,3,0,0 "RPL17B" "60s large subunit ribosomal protein L17.e" 5,1,0,0 "RPL17B" "60s large subunit ribosomal protein L17.e" ytykl056c 40,3,0,0 "null" "strong similarity to human IgE-dependent histamine-releasing factor" 5,1,0,0 "null" "strong similarity to human IgE-dependent histamine-releasing factor" ytybl092w 40,3,0,0 "RPL32" "60S large subunit ribosomal protein L32.e" 5,1,0,0 "RPL32" "60S large subunit ribosomal protein L32.e" ytybr191w 40,3,0,0 "RPL21A" "ribosomal protein L21.e" 5,1,0,0 "RPL21A" "ribosomal protein L21.e" ytylr448w 40,3,0,0 "RPL6B" "60S large subunit ribosomal protein" 5,1,0,0 "RPL6B" "60S large subunit ribosomal protein" ytypr132w 40,3,0,0 "RPS23B" "40S small subunit ribosomal protein S23.e" 5,1,0,0 "RPS23B" "40S small subunit ribosomal protein S23.e" ytyhl015w 40,3,0,0 "RPS20" "ribosomal protein" 5,1,0,0 "RPS20" "ribosomal protein" ytypl131w 40,3,0,0 "RPL5" "60S large subunit ribosomal protein L5.e" 5,1,0,0 "RPL5" "60S large subunit ribosomal protein L5.e" ytyil148w 40,3,0,0 "RPL40A" "ubiquitin" 5,1,0,0 "RPL40A" "ubiquitin" 6,13,1,0 "RPL40A" "ubiquitin" ytyjr123w 40,3,0,0 "RPS5" "ribosomal protein S5.e" 5,1,0,0 "RPS5" "ribosomal protein S5.e" ytydr447c 40,3,0,0 "RPS17B" "ribosomal protein S17.e.B" 5,1,0,0 "RPS17B" "ribosomal protein S17.e.B" ytygl076c 40,3,0,0 "RPL7A" "60S large subunit ribosomal protein L7.e.A" 5,1,0,0 "RPL7A" "60S large subunit ribosomal protein L7.e.A" ytynl301c 40,3,0,0 "RPL18B" "60S large subunit ribosomal protein L18.e" 5,1,0,0 "RPL18B" "60S large subunit ribosomal protein L18.e" ytydr385w 40,3,0,0 "EFT2" "translation elongation factor eEF2" 5,4,0,0 "EFT2" "translation elongation factor eEF2" ytyor293w 40,3,0,0 "RPS10A" "ribosomal protein S10.e" 5,1,0,0 "RPS10A" "ribosomal protein S10.e" ytykl006w 40,3,0,0 "RPL14A" "ribosomal protein" 5,1,0,0 "RPL14A" "ribosomal protein" ytynl067w 40,3,0,0 "RPL9B" "ribosomal protein L9.e.c14" 5,1,0,0 "RPL9B" "ribosomal protein L9.e.c14" ytyol120c 40,3,0,0 "RPL18A" "60S large subunit ribosomal protein S18.e" 5,1,0,0 "RPL18A" "60S large subunit ribosomal protein S18.e" ytymr116c 2,16,0,0 "ASC1" "40S small subunit ribosomal protein" 40,3,0,0 "ASC1" "40S small subunit ribosomal protein" 5,1,0,0 "ASC1" "40S small subunit ribosomal protein" 5,4,0,0 "ASC1" "40S small subunit ribosomal protein" ytyil018w 40,3,0,0 "RPL2B" "60S large subunit ribosomal protein L8.e" 5,1,0,0 "RPL2B" "60S large subunit ribosomal protein L8.e" ytyfr031c-a 5,1,0,0 "RPL2A" "ribosomal protein L8.e" ytydl075w 40,3,0,0 "RPL31A" "60S large subunit ribosomal protein L31.e" 5,1,0,0 "RPL31A" "60S large subunit ribosomal protein L31.e" Training Accuracy: 67/67 (100.00%) Training Frequency class '5/0/0/0': 160/1706 (9.38%) Evaluation on validation data (884 items): ytyjl190c 40,3,0,0 "RPS22A" "ribosomal protein S15a.e.c10" 5,1,0,0 "RPS22A" "ribosomal protein S15a.e.c10" ytyhl001w 40,3,0,0 "RPL14B" "ribosomal protein" 5,1,0,0 "RPL14B" "ribosomal protein" ytylr110c - 30,1,0,0 "CCW12" "strong similarity to FLO1P" ytydr012w 40,3,0,0 "RPL4B" "ribosomal protein L4.e.B" 5,1,0,0 "RPL4B" "ribosomal protein L4.e.B" ytyel054c 40,3,0,0 "RPL12A" "60S large subunit ribosomal protein L12.e" 5,1,0,0 "RPL12A" "60S large subunit ribosomal protein L12.e" ytyll024c - 6,1,0,0 "SSA2" "heat shock protein of HSP70 family, cytosolic" 6,4,0,0 "SSA2" "heat shock protein of HSP70 family, cytosolic" 8,4,0,0 "SSA2" "heat shock protein of HSP70 family, cytosolic" 8,7,0,0 "SSA2" "heat shock protein of HSP70 family, cytosolic" ytyjl189w 40,3,0,0 "RPL39" "60S large subunit ribosomal protein L39.e" 5,1,0,0 "RPL39" "60S large subunit ribosomal protein L39.e" ytyal038w - 1,5,1,0 "CDC19" "pyruvate kinase" 2,1,0,0 "CDC19" "pyruvate kinase" 40,3,0,0 "CDC19" "pyruvate kinase" ytyor096w 40,3,0,0 "RPS7A" "ribosomal protein" 5,1,0,0 "RPS7A" "ribosomal protein" ytypl037c - 1,5,4,0 "EGD1" "GAL4 DNA-binding enhancer protein" 4,5,1,4 "EGD1" "GAL4 DNA-binding enhancer protein" 40,10,0,0 "EGD1" "GAL4 DNA-binding enhancer protein" 6,4,0,0 "EGD1" "GAL4 DNA-binding enhancer protein" ytyhr203c 40,3,0,0 "RPS4B" "ribosomal protein S4.e.c8" 5,1,0,0 "RPS4B" "ribosomal protein S4.e.c8" ytyhl033c 40,3,0,0 "RPL8A" "60S large subunit ribosomal protein L7a.e.A" 5,1,0,0 "RPL8A" "60S large subunit ribosomal protein L7a.e.A" ytylr388w 40,3,0,0 "RPS29A" "ribosomal protein S29.e.A" 5,1,0,0 "RPS29A" "ribosomal protein S29.e.A" ytyjr047c 40,3,0,0 "ANB1" "translation initiation factor eIF5A.2" 5,4,0,0 "ANB1" "translation initiation factor eIF5A.2" ytynl302c 40,3,0,0 "RPS19B" "40S small subunit ribosomal protein S19.e" 5,1,0,0 "RPS19B" "40S small subunit ribosomal protein S19.e" ytygr192c - 1,5,1,0 "TDH3" "glyceraldehyde-3-phosphate dehydrogenase 3" 2,1,0,0 "TDH3" "glyceraldehyde-3-phosphate dehydrogenase 3" 40,3,0,0 "TDH3" "glyceraldehyde-3-phosphate dehydrogenase 3" ytyjr145c 40,3,0,0 "RPS4A" "ribosomal protein S4.e.c10" 5,1,0,0 "RPS4A" "ribosomal protein S4.e.c10" ytylr075w 3,3,1,0 "RPL10" "60S large subunit ribosomal protein" 40,3,0,0 "RPL10" "60S large subunit ribosomal protein" 5,1,0,0 "RPL10" "60S large subunit ribosomal protein" 6,10,0,0 "RPL10" "60S large subunit ribosomal protein" ytynl162w 40,3,0,0 "RPL42A" "ribosomal protein L36a.e" 5,1,0,0 "RPL42A" "ribosomal protein L36a.e" ytylr325c 40,3,0,0 "RPL38" "60S large subunit ribosomal protein" 5,1,0,0 "RPL38" "60S large subunit ribosomal protein" ytyol121c 40,3,0,0 "RPS19A" "40S small subunit ribosomal protein S19.e" 5,1,0,0 "RPS19A" "40S small subunit ribosomal protein S19.e" ytyer102w 40,3,0,0 "RPS8B" "ribosomal protein S8.e" 5,1,0,0 "RPS8B" "ribosomal protein S8.e" ytylr333c 40,3,0,0 "RPS25B" "ribosomal protein S25.e.c12" 5,1,0,0 "RPS25B" "ribosomal protein S25.e.c12" ytydl136w 40,3,0,0 "RPL35B" "60S large subunit ribosomal protein" 5,1,0,0 "RPL35B" "60S large subunit ribosomal protein" ytyor133w 40,3,0,0 "EFT1" "translation elongation factor eEF2" 5,4,0,0 "EFT1" "translation elongation factor eEF2" ytygl103w 40,3,0,0 "RPL28" "60S large subunit ribosomal protein L27a.e" 5,1,0,0 "RPL28" "60S large subunit ribosomal protein L27a.e" ytynl096c 40,3,0,0 "RPS7B" "strong similarity to ribosomal protein S7" 5,1,0,0 "RPS7B" "strong similarity to ribosomal protein S7" ytypr102c 40,3,0,0 "RPL11A" "ribosomal protein L11.e" 5,1,0,0 "RPL11A" "ribosomal protein L11.e" ytylr441c 14,4,3,3 "RPS1A" "ribosomal protein S3a.e" 40,3,0,0 "RPS1A" "ribosomal protein S3a.e" 5,1,0,0 "RPS1A" "ribosomal protein S3a.e" Validation Accuracy: 24/29 (82.76%) Validation Frequency class '5/0/0/0': 70/884 (7.92%) Evaluation on propertest data (1342 items): ytykl060c - 1,5,1,0 "FBA1" "fructose-bisphosphate aldolase" 2,1,0,0 "FBA1" "fructose-bisphosphate aldolase" 40,3,0,0 "FBA1" "fructose-bisphosphate aldolase" ytylr355c - 1,1,1,0 "ILV5" "ketol-acid reducto-isomerase" 40,16,0,0 "ILV5" "ketol-acid reducto-isomerase" ytygl123w 40,3,0,0 "RPS2" "40S small subunit ribosomal protein" 5,1,0,0 "RPS2" "40S small subunit ribosomal protein" ytyil053w - 1,5,1,0 "RHR2" "DL-glycerol phosphatase" ytypl198w 40,3,0,0 "RPL7B" "60S large subunit ribosomal protein" 5,1,0,0 "RPL7B" "60S large subunit ribosomal protein" ytyml073c 40,3,0,0 "RPL6A" "60S large subunit ribosomal protein" 5,1,0,0 "RPL6A" "60S large subunit ribosomal protein" ytydr418w 40,3,0,0 "RPL12B" "60S large subunit ribosomal protein L12.e" 5,1,0,0 "RPL12B" "60S large subunit ribosomal protein L12.e" ytybr010w - 4,5,1,4 "HHT1" "histone H3" 40,10,3,0 "HHT1" "histone H3" ytypr043w 40,3,0,0 "RPL43A" "ribosomal protein L37a.e" 5,1,0,0 "RPL43A" "ribosomal protein L37a.e" ytyfl014w - 1,5,1,0 "HSP12" "heat shock protein" 1,6,7,0 "HSP12" "heat shock protein" 11,1,0,0 "HSP12" "heat shock protein" 13,11,3,13 "HSP12" "heat shock protein" 3,1,5,1 "HSP12" "heat shock protein" ytyer074w 40,3,0,0 "RPS24A" "40s small subunit ribosomal protein S24.e" 5,1,0,0 "RPS24A" "40s small subunit ribosomal protein S24.e" ytygr085c 40,3,0,0 "RPL11B" "ribosomal protein" 5,1,0,0 "RPL11B" "ribosomal protein" ytypl220w 40,3,0,0 "RPL1A" "ribosomal protein" 5,1,0,0 "RPL1A" "ribosomal protein" ytyll045c 40,3,0,0 "RPL8B" "60s large subunit ribosomal protein L7a.e.B" 5,1,0,0 "RPL8B" "60s large subunit ribosomal protein L7a.e.B" ytymr194w 40,3,0,0 "RPL36A" "60S large subunit ribosomal protein" 5,1,0,0 "RPL36A" "60S large subunit ribosomal protein" ytypl143w 40,3,0,0 "RPL33A" "ribosomal protein L35a.e.c16" 5,1,0,0 "RPL33A" "ribosomal protein L35a.e.c16" ytyjl136c 40,3,0,0 "RPS21B" "40S small subunit ribosomal protein S21.e" 5,1,0,0 "RPS21B" "40S small subunit ribosomal protein S21.e" ytybr118w 40,3,0,0 "TEF2" "translation elongation factor eEF1 alpha-A chain, cytosolic" 5,4,0,0 "TEF2" "translation elongation factor eEF1 alpha-A chain, cytosolic" ytyjl138c 40,3,0,0 "TIF2" "translation initiation factor eIF4A" 5,4,0,0 "TIF2" "translation initiation factor eIF4A" ytyml024w 40,3,0,0 "RPS17A" "ribosomal protein S17.e.A" 5,1,0,0 "RPS17A" "ribosomal protein S17.e.A" ytydr225w - 4,5,1,4 "HTA1" "histone H2A" 40,10,3,0 "HTA1" "histone H2A" ytygl031c 40,3,0,0 "RPL24A" "60S large subunit ribosomal protein L24.e.A" 5,1,0,0 "RPL24A" "60S large subunit ribosomal protein L24.e.A" ytylr287c-a 40,3,0,0 "RPS30A" "40S small subunit ribosomal protein" 5,1,0,0 "RPS30A" "40S small subunit ribosomal protein" ytygr034w 40,3,0,0 "RPL26B" "60S large subunit ribosomal protein" 5,1,0,0 "RPL26B" "60S large subunit ribosomal protein" ytybl072c 40,3,0,0 "RPS8A" "ribosomal protein S8.e" 5,1,0,0 "RPS8A" "ribosomal protein S8.e" ytydl081c 40,3,0,0 "RPP1A" "60S large subunit acidic ribosomal protein a1" 5,1,0,0 "RPP1A" "60S large subunit acidic ribosomal protein a1" 5,4,0,0 "RPP1A" "60S large subunit acidic ribosomal protein a1" ytymr142c 40,3,0,0 "RPL13B" "60S large subunit ribosomal protein" 5,1,0,0 "RPL13B" "60S large subunit ribosomal protein" ytyol039w 40,3,0,0 "RPP2A" "acidic ribosomal protein P2.beta" 5,1,0,0 "RPP2A" "acidic ribosomal protein P2.beta" ytylr185w 40,3,0,0 "RPL37A" "ribosomal protein L37.e" 5,1,0,0 "RPL37A" "ribosomal protein L37.e" ytydl083c 40,3,0,0 "RPS16B" "ribosomal protein S16.e" 5,1,0,0 "RPS16B" "ribosomal protein S16.e" ytymr143w 40,3,0,0 "RPS16A" "ribosomal protein S16.e" 5,1,0,0 "RPS16A" "ribosomal protein S16.e" ytyhr183w - 1,5,1,0 "GND1" "6-phosphogluconate dehydrogenase" 2,7,0,0 "GND1" "6-phosphogluconate dehydrogenase" 40,3,0,0 "GND1" "6-phosphogluconate dehydrogenase" ytyel026w - 4,5,5,1 "SNU13" "component of the U4/U6.U5 snRNP" ytygr118w 40,3,0,0 "RPS23A" "40S small subunit ribosomal protein S23.e" 5,1,0,0 "RPS23A" "40S small subunit ribosomal protein S23.e" ytyml063w 40,3,0,0 "RPS1B" "ribosomal protein S3a.e" 5,1,0,0 "RPS1B" "ribosomal protein S3a.e" ytymr242c 40,3,0,0 "RPL20A" "60s large subunit ribosomal protein" 5,1,0,0 "RPL20A" "60s large subunit ribosomal protein" ytykr059w 40,3,0,0 "TIF1" "translation initiation factor 4A" 5,4,0,0 "TIF1" "translation initiation factor 4A" ytyjr009c - 1,5,1,0 "TDH2" "glyceraldehyde-3-phosphate dehydrogenase 2" 2,1,0,0 "TDH2" "glyceraldehyde-3-phosphate dehydrogenase 2" 40,3,0,0 "TDH2" "glyceraldehyde-3-phosphate dehydrogenase 2" ytygl135w 40,3,0,0 "RPL1B" "60S large subunit ribosomal protein" 5,1,0,0 "RPL1B" "60S large subunit ribosomal protein" ytybr196c - 1,5,1,0 "PGI1" "glucose-6-phosphate isomerase" 2,1,0,0 "PGI1" "glucose-6-phosphate isomerase" 40,3,0,0 "PGI1" "glucose-6-phosphate isomerase" ytykr094c 40,3,0,0 "RPL40B" "ubiquitin" 5,1,0,0 "RPL40B" "ubiquitin" 6,13,1,0 "RPL40B" "ubiquitin" ytyil069c 40,3,0,0 "RPS24B" "40S small subunit ribosomal protein S24.e" 5,1,0,0 "RPS24B" "40S small subunit ribosomal protein S24.e" ytydr382w 40,3,0,0 "RPP2B" "60S large subunit acidic ribosomal protein" 5,1,0,0 "RPP2B" "60S large subunit acidic ribosomal protein" ytygl253w - 1,5,1,0 "HXK2" "hexokinase II" 1,5,4,0 "HXK2" "hexokinase II" 2,1,0,0 "HXK2" "hexokinase II" 40,10,0,0 "HXK2" "hexokinase II" 40,3,0,0 "HXK2" "hexokinase II" ytypl249c-a 40,3,0,0 "RPL36B" "60S large subunit ribosomal protein" 5,1,0,0 "RPL36B" "60S large subunit ribosomal protein" ytynl209w 40,3,0,0 "SSB2" "heat shock protein of HSP70 family, cytosolic" 5,99,0,0 "SSB2" "heat shock protein of HSP70 family, cytosolic" ytybl027w 40,3,0,0 "RPL19B" "60S large subunit ribosomal protein L19.e" 5,1,0,0 "RPL19B" "60S large subunit ribosomal protein L19.e" ytypl090c 40,3,0,0 "RPS6A" "ribosomal protein S6.e" 5,1,0,0 "RPS6A" "ribosomal protein S6.e" ytyol040c 40,3,0,0 "RPS15" "40S small subunit ribosomal protein" 5,1,0,0 "RPS15" "40S small subunit ribosomal protein" ytynl069c 40,3,0,0 "RPL16B" "60S large subunit ribosomal protein" 5,1,0,0 "RPL16B" "60S large subunit ribosomal protein" ytybr048w 40,3,0,0 "RPS11B" "ribosomal protein S11.e.B" 5,1,0,0 "RPS11B" "ribosomal protein S11.e.B" ytydl055c - 1,5,1,0 "PSA1" "mannose-1-phosphate guanyltransferase" 30,1,0,0 "PSA1" "mannose-1-phosphate guanyltransferase" ytypl079w 40,3,0,0 "RPL21B" "ribosomal protein L21" 5,1,0,0 "RPL21B" "ribosomal protein L21" ytydr155c - 11,1,0,0 "CPH1" "cyclophilin (peptidylprolyl isomerase)" 40,3,0,0 "CPH1" "cyclophilin (peptidylprolyl isomerase)" 6,1,0,0 "CPH1" "cyclophilin (peptidylprolyl isomerase)" ytygr027c 40,3,0,0 "RPS25A" "ribosomal protein S25.e.c7" 5,1,0,0 "RPS25A" "ribosomal protein S25.e.c7" ytyol127w 40,3,0,0 "RPL25" "ribosomal protein L23a.e" 5,1,0,0 "RPL25" "ribosomal protein L23a.e" ytymr230w 40,3,0,0 "RPS10B" "ribosomal protein" 5,1,0,0 "RPS10B" "ribosomal protein" Propertest Accuracy: 44/57 (77.19%) Propertest Frequency class '5/0/0/0': 129/1342 (9.61%) New (unknown) data (884 items): ------------------ Rule 333: ss(_1,_2,c),coil_len(_2,b4_6),beta_dist(_1,b0.0_6.1),coil_dist(_1,b6.2_39.5),nss(_2,_3,b) = 1 ss(_1,_2,b),ss(_1,_3,a),alpha_len(_3,b6_10),nss(_2,_3,a),nss(_3,_4,b) = 0 seq_aa_rat_pair_g_g > 0.467 -> class 67/0/0/0 "TRANSPORT FACILITATION" Evaluation on training data (1706 items): ytyor306c 67,99,0,0 "null" "similarity to human X-linked PEST-containing transporter" ytypr198w 11,7,0,0 "SGE1" "drug resistance protein" 67,28,0,0 "SGE1" "drug resistance protein" ytygr224w 11,7,0,0 "AZR1" "strong similarity to drug resistance protein SGE1, YKR105c and YCL069W" 67,28,0,0 "AZR1" "strong similarity to drug resistance protein SGE1, YKR105c and YCL069W" ytyil170w 1,5,7,0 "HXT12" "strong similarity to sugar transport proteins" 40,2,0,0 "HXT12" "strong similarity to sugar transport proteins" 67,7,0,0 "HXT12" "strong similarity to sugar transport proteins" 8,19,0,0 "HXT12" "strong similarity to sugar transport proteins" ytypl224c 13,1,1,1 "MMT2" "mitochondrial iron transporter" 40,16,0,0 "MMT2" "mitochondrial iron transporter" 67,4,1,2 "MMT2" "mitochondrial iron transporter" 8,4,0,0 "MMT2" "mitochondrial iron transporter" ytycl069w 11,7,0,0 "null" "strong similarity to drug resistance protein SGE1" 67,28,0,0 "null" "strong similarity to drug resistance protein SGE1" ytymr279c 11,7,0,0 "null" "strong similarity to aminotriazole resistance protein" 67,28,0,0 "null" "strong similarity to aminotriazole resistance protein" ytygr138c 11,7,0,0 "TPO2" "polyamine transport protein" 67,28,0,0 "TPO2" "polyamine transport protein" ytybr008c 11,7,0,0 "FLR1" "fluconazole resistance protein" 67,28,0,0 "FLR1" "fluconazole resistance protein" ytyll055w 67,19,0,0 "null" "similarity to DAL5P" ytydr119w 11,7,0,0 "null" "similarity to B.subtilis tetracyclin resistance" 67,28,0,0 "null" "similarity to B.subtilis tetracyclin resistance" ytykr105c 11,7,0,0 "null" "strong similarity to SGE1P and hypothetical protein YCL069w" 67,28,0,0 "null" "strong similarity to SGE1P and hypothetical protein YCL069w" ytyer060w-a 1,3,19,0 "FCY22" "purine/cytosine permease with similarity to FCY2P" 67,16,0,0 "FCY22" "purine/cytosine permease with similarity to FCY2P" 8,99,0,0 "FCY22" "purine/cytosine permease with similarity to FCY2P" Training Accuracy: 13/13 (100.00%) Training Frequency class '67/0/0/0': 151/1706 (8.85%) Evaluation on validation data (884 items): ytykl217w 1,5,7,0 "JEN1" "carboxylic acid transporter protein" 67,7,0,0 "JEN1" "carboxylic acid transporter protein" ytypr028w - 8,7,0,0 "YIP2" "Ypt-interacting protein" ytymr088c 11,7,0,0 "null" "similarity to multidrug resistance proteins" 67,28,0,0 "null" "similarity to multidrug resistance proteins" ytykr093w 40,2,0,0 "PTR2" "peptide transporter" 67,99,0,0 "PTR2" "peptide transporter" 8,99,0,0 "PTR2" "peptide transporter" ytypr156c 11,7,0,0 "TPO3" "polyamine transporter" 67,28,0,0 "TPO3" "polyamine transporter" ytydl128w 13,1,1,3 "VCX1" "Ca2+-transport (H+/Ca2+ exchange) protein, vacuolar" 13,1,1,99 "VCX1" "Ca2+-transport (H+/Ca2+ exchange) protein, vacuolar" 40,25,0,0 "VCX1" "Ca2+-transport (H+/Ca2+ exchange) protein, vacuolar" 67,4,1,2 "VCX1" "Ca2+-transport (H+/Ca2+ exchange) protein, vacuolar" 8,13,0,0 "VCX1" "Ca2+-transport (H+/Ca2+ exchange) protein, vacuolar" ytygr289c 1,5,7,0 "MAL11" "general alpha-glucoside permease" 67,7,0,0 "MAL11" "general alpha-glucoside permease" Validation Accuracy: 6/7 (85.71%) Validation Frequency class '67/0/0/0': 56/884 (6.33%) Evaluation on propertest data (1342 items): ytyll028w 11,7,0,0 "TPO1" "polyamine transport protein" 67,28,0,0 "TPO1" "polyamine transport protein" ytyhl047c 11,7,0,0 "TAF1" "siderophore transporter for triacetylfusarinine C" 67,28,0,0 "TAF1" "siderophore transporter for triacetylfusarinine C" ytyml123c 1,4,7,0 "PHO84" "high-affinity inorganic phosphate/H+ symporter" 13,1,1,3 "PHO84" "high-affinity inorganic phosphate/H+ symporter" 13,1,3,3 "PHO84" "high-affinity inorganic phosphate/H+ symporter" 40,2,0,0 "PHO84" "high-affinity inorganic phosphate/H+ symporter" 67,4,7,0 "PHO84" "high-affinity inorganic phosphate/H+ symporter" 67,7,0,0 "PHO84" "high-affinity inorganic phosphate/H+ symporter" 8,19,0,0 "PHO84" "high-affinity inorganic phosphate/H+ symporter" ytyol119c 67,99,0,0 "null" "similarity to monocarboxylate transporter proteins" ytyol158c 11,7,0,0 "ENB1" "a gene of the major facilitator superfamily encodes a transporter for enterobactin" 67,28,0,0 "ENB1" "a gene of the major facilitator superfamily encodes a transporter for enterobactin" ytyhr032w 11,7,0,0 "ERC1" "ethionine resistance protein" 67,28,0,0 "ERC1" "ethionine resistance protein" ytymr011w 1,5,7,0 "HXT2" "high-affinity hexose transporter" 40,2,0,0 "HXT2" "high-affinity hexose transporter" 67,7,0,0 "HXT2" "high-affinity hexose transporter" 8,19,0,0 "HXT2" "high-affinity hexose transporter" ytybr293w 11,7,0,0 "null" "similarity to multidrug resistance proteins" 67,28,0,0 "null" "similarity to multidrug resistance proteins" ytygr174c - 2,13,0,0 "CBP4" "ubiquinol--cytochrome-c reductase assembly factor" 40,16,0,0 "CBP4" "ubiquinol--cytochrome-c reductase assembly factor" 6,10,0,0 "CBP4" "ubiquinol--cytochrome-c reductase assembly factor" ytyol020w 1,1,7,0 "TAT2" "high affinity tryptophan transport protein" 40,2,0,0 "TAT2" "high affinity tryptophan transport protein" 67,10,0,0 "TAT2" "high affinity tryptophan transport protein" 8,19,0,0 "TAT2" "high affinity tryptophan transport protein" Propertest Accuracy: 9/10 (90.00%) Propertest Frequency class '67/0/0/0': 105/1342 (7.82%) New (unknown) data (884 items): ytygr284c - 99,0,0,0 "ERV29" "similarity to mouse Surf-4 protein" ytyol137w - 99,0,0,0 "null" "weak similarity to tetracycline resistance proteins" ytyfl046w - 99,0,0,0 "null" "weak similarity to middle part of C.elegans myosin heavy chain A" ytyjr082c - 99,0,0,0 "null" "hypothetical protein" ytydl054c - 99,0,0,0 "null" "similarity to hypothetical protein C. albicans" ytyor161c - 99,0,0,0 "null" "similarity to C.elegans cosmid F35C8" ytykr087c - 99,0,0,0 "null" "similarity to hypothetical Myxococcus xanthus protein" ytybr220c - 99,0,0,0 "null" "similarity to human acetyl-coenzyme A transporter" ------------------ Rule 200: seq_aa_rat_pair_p_q > 1.124 seq_aa_rat_pair_w_v > 0.228 -> class 29/0/0/0 "TRANSPOSABLE ELEMENTS, VIRAL AND PLASMID PROTEINS" Evaluation on training data (1706 items): ytty1a_or 29,0,0,0 "TY1A" "TY1A protein" ytty1a_pl 29,0,0,0 "TY1A" "TY1A protein" ytty1a_h 29,0,0,0 "TY1A" "TY1A protein" ytty1a_dr2 29,0,0,0 "TY1A" "TY1A protein" ytty1a_dr3 29,0,0,0 "TY1A" "TY1A protein" ytty1a_dr4 29,0,0,0 "TY1A" "TY1A protein" ytty1a_dr5 29,0,0,0 "TY1A" "TY1A protein" ytty1a_jr2 29,0,0,0 "TY1A" "TY1A protein" ytty1a_nl1 29,0,0,0 "TY1A" "TY1A protein" ytty1a_er2 29,0,0,0 "TY1A" "TY1A protein" ytty1a_pr2 29,0,0,0 "TY1A" "TY1A protein" ytty1a_pr3 29,0,0,0 "TY1A" "TY1A protein" ytty1a_gr2 29,0,0,0 "TY1A" "TY1A protein" ytty1a_ml1 29,0,0,0 "TY1A" "TY1A protein" ytty1a_ml2 29,0,0,0 "TY1A" "TY1A protein" Training Accuracy: 15/15 (100.00%) Training Frequency class '29/0/0/0': 52/1706 (3.05%) Evaluation on validation data (884 items): ytty1a_lr1 29,0,0,0 "TY1A" "TY1A protein" ytty1a_lr2 29,0,0,0 "TY1A" "TY1A protein" ytty1a_lr4 29,0,0,0 "TY1A" "TY1A protein" ytty1a_mr2 29,0,0,0 "TY1A" "TY1A protein" ytty1a_dr6 29,0,0,0 "TY1A" "TY1A protein" ytty1a_gr3 29,0,0,0 "TY1A" "TY1A protein" ytty1a_br 29,0,0,0 "TY1A" "TY1A protein" ytymr035w - 3,1,5,1 "IMP2" "mitochondrial inner membrane protease subunit" 40,16,0,0 "IMP2" "mitochondrial inner membrane protease subunit" 6,4,0,0 "IMP2" "mitochondrial inner membrane protease subunit" 6,7,0,0 "IMP2" "mitochondrial inner membrane protease subunit" Validation Accuracy: 7/8 (87.50%) Validation Frequency class '29/0/0/0': 29/884 (3.28%) Evaluation on propertest data (1342 items): ytty1a_ol 29,0,0,0 "TY1A" "TY1A protein" ytty1a_a 29,0,0,0 "TY1A" "TY1A protein" ytty1a_dr1 29,0,0,0 "TY1A" "TY1A protein" ytty1a_jr1 29,0,0,0 "TY1A" "TY1A protein" ytty1a_lr3 29,0,0,0 "TY1A" "TY1A protein" ytty1a_er1 29,0,0,0 "TY1A" "TY1A protein" ytty1a_pr1 29,0,0,0 "TY1A" "TY1A protein" ytypr133w-a - 40,16,0,0 "TOM5" "mitochondrial outer membrane protein" 8,4,0,0 "TOM5" "mitochondrial outer membrane protein" ytty1a_gr1 29,0,0,0 "TY1A" "TY1A protein" Propertest Accuracy: 8/9 (88.89%) Propertest Frequency class '29/0/0/0': 35/1342 (2.61%) New (unknown) data (884 items): ytykl207w - 99,0,0,0 "null" "similarity to conserved hypothetical transmembrane protein S.pombe" ytydl123w - 99,0,0,0 "SNA4" "similarity to hypothetical protein SNA3/YJL151c" ------------------ Rule 414: seq_position = 2 ss(_1,_2,b),beta_len(_2,b1_3),alpha_dist(_1,b17.9_27.5),coil_dist(_1,gte57.6),nss(_2,_3,a) = 1 -> class 29/0/0/0 "TRANSPOSABLE ELEMENTS, VIRAL AND PLASMID PROTEINS" Evaluation on training data (1706 items): ytty1b_pl 29,0,0,0 "TY1B" "TY1B protein" ytty1b_h 29,0,0,0 "TY1B" "TY1B" ytty2b_b 29,0,0,0 "TY2B" "TY2B protein" ytty2b_c 29,0,0,0 "TY2B" "TY2B protein" ytty2b_n 29,0,0,0 "TY2B" "TY2B protein" ytty1b_br 29,0,0,0 "TY1B" "TY1B protein" ytty4b_j 29,0,0,0 "TY4B" "TY4B protein" Training Accuracy: 7/7 (100.00%) Training Frequency class '29/0/0/0': 52/1706 (3.05%) Evaluation on validation data (884 items): ytty1b_ol 29,0,0,0 "TY1B" "TY1B protein" ytty1b_bl 29,0,0,0 "TY1B" "TY1B protein" Validation Accuracy: 2/2 (100.00%) Validation Frequency class '29/0/0/0': 29/884 (3.28%) Evaluation on propertest data (1342 items): ytydr005c - 6,4,0,0 "MAF1" "required for sorting of MOD5P" ytypr111w - 3,3,1,0 "DBF20" "cell cycle protein kinase related to DBF2P" ytty2b_f 29,0,0,0 "TY2B" "TY2B protein" ytty4b_h 29,0,0,0 "TY4B" "TY4B protein" Propertest Accuracy: 2/4 (50.00%) Propertest Frequency class '29/0/0/0': 35/1342 (2.61%) New (unknown) data (884 items): ytygl232w - 99,0,0,0 "null" "weak similarity to P.falciparum dihydropteroate synthase" ------------------ Rule 420: seq_aa_rat_pair_p_c <= 0.119 seq_aa_rat_pair_w_h <= 0 beta_dist(_1,b0.0_6.1),coil_dist(_1,b6.2_39.5) = 1 ss(_1,_2,b),beta_len(_2,b4_6),alpha_dist(_1,gte47.6),nss(_2,_3,a) = 0 ss(_1,_2,b),ss(_1,_3,a),alpha_len(_3,gte14),beta_len(_2,gte7),nss(_3,_4,b) = 0 seq_aa_rat_pair_w_m <= 0.089 -> class 8/0/0/0 "CELLULAR TRANSPORT AND TRANSPORT MECHANISMS" Evaluation on training data (1706 items): ytygl029w - 30,99,0,0 "CGR1" "Coiled-coil protein, may play a role in ribosome biogenesis" ytypr198w - 11,7,0,0 "SGE1" "drug resistance protein" 67,28,0,0 "SGE1" "drug resistance protein" ytykl141w - 2,13,0,0 "SDH3" "cytochrome b560 subunit of respiratory complex II" 40,16,0,0 "SDH3" "cytochrome b560 subunit of respiratory complex II" ytynl189w 30,10,0,0 "SRP1" "karyopherin-alpha or importin" 40,10,0,0 "SRP1" "karyopherin-alpha or importin" 6,4,0,0 "SRP1" "karyopherin-alpha or importin" 8,1,0,0 "SRP1" "karyopherin-alpha or importin" ytycr060w - 11,1,0,0 "null" "similarity to stress inducible protein STI1P" ytyol147c - 40,19,0,0 "PEX11" "peroxisomal membrane protein - peroxin" ytylr359w - 1,3,1,0 "ADE13" "adenylosuccinate lyase" ytylr026c 40,8,0,0 "SED5" "syntaxin (T-SNARE)" 8,7,0,0 "SED5" "syntaxin (T-SNARE)" ytymr159c - 6,13,4,0 "APG16" "coiled-coil protein required for autophagy" ytypr125w - 4,5,5,1 "MRS7" "suppressor of MRS2-1 mutation" ytyhr026w - 40,25,0,0 "PPA1" "H+-ATPase 23 KD subunit, vacuolar" 67,4,1,2 "PPA1" "H+-ATPase 23 KD subunit, vacuolar" 67,50,22,0 "PPA1" "H+-ATPase 23 KD subunit, vacuolar" ytykl006c-a 40,8,0,0 "SFT1" "SNARE-like protein" 8,7,0,0 "SFT1" "SNARE-like protein" ytydl197c - 4,5,1,4 "ASF2" "anti-silencing protein" ytyjr132w - 1,3,16,0 "NMD5" "NAM7P interacting protein" ytydl198c 40,16,0,0 "YHM1" "member of the mitochondrial carrier family (MCF)" 67,7,0,0 "YHM1" "member of the mitochondrial carrier family (MCF)" 8,4,0,0 "YHM1" "member of the mitochondrial carrier family (MCF)" ytylr207w - 6,13,0,0 "HRD3" "involved in degradation of HMG2P" ytyel020w-a 30,16,0,0 "TIM9" "essential subunit of the TIM22-complex for mitochondrial protein import" 40,16,0,0 "TIM9" "essential subunit of the TIM22-complex for mitochondrial protein import" 6,4,0,0 "TIM9" "essential subunit of the TIM22-complex for mitochondrial protein import" 8,4,0,0 "TIM9" "essential subunit of the TIM22-complex for mitochondrial protein import" ytyjr135c - 3,3,4,5 "MCM22" "required for maintenance of chromosomes and minichromosomes" ytybr084c-a - 40,3,0,0 "RPL19A" "60S large subunit ribosomal protein L19.e" 5,1,0,0 "RPL19A" "60S large subunit ribosomal protein L19.e" ytyfr052w - 11,1,0,0 "RPN12" "26S proteasome regulatory subunit" 3,3,1,0 "RPN12" "26S proteasome regulatory subunit" 40,10,0,0 "RPN12" "26S proteasome regulatory subunit" 40,7,0,0 "RPN12" "26S proteasome regulatory subunit" 6,13,1,0 "RPN12" "26S proteasome regulatory subunit" ytyml098w - 4,5,1,1 "TAF19" "TFIID subunit (TBP-associated factor), 19 kD" 40,10,0,0 "TAF19" "TFIID subunit (TBP-associated factor), 19 kD" ytydl107w - 2,13,0,0 "MSS2" "ser/thr protein kinase" ytyjl133w 4,5,5,1 "MRS3" "RNA splicing protein and member of the mitochondrial carrier family (MCF)" 40,16,0,0 "MRS3" "RNA splicing protein and member of the mitochondrial carrier family (MCF)" 8,4,0,0 "MRS3" "RNA splicing protein and member of the mitochondrial carrier family (MCF)" ytypl065w 40,3,0,0 "VPS28" "involved in vacuolar traffic" 8,13,0,0 "VPS28" "involved in vacuolar traffic" ytymr197c 40,9,0,0 "VTI1" "v-SNARE: involved in Golgi retrograde protein traffic" 6,4,0,0 "VTI1" "v-SNARE: involved in Golgi retrograde protein traffic" 8,7,0,0 "VTI1" "v-SNARE: involved in Golgi retrograde protein traffic" ytymr279c - 11,7,0,0 "null" "strong similarity to aminotriazole resistance protein" 67,28,0,0 "null" "strong similarity to aminotriazole resistance protein" ytydr395w 4,3,3,0 "SXM1" "putative beta-karyopherin" 4,7,0,0 "SXM1" "putative beta-karyopherin" 40,10,0,0 "SXM1" "putative beta-karyopherin" 8,1,0,0 "SXM1" "putative beta-karyopherin" ytybl050w 30,25,0,0 "SEC17" "transport vesicle fusion protein" 40,3,0,0 "SEC17" "transport vesicle fusion protein" 40,9,0,0 "SEC17" "transport vesicle fusion protein" 8,16,0,0 "SEC17" "transport vesicle fusion protein" 8,19,0,0 "SEC17" "transport vesicle fusion protein" 8,7,0,0 "SEC17" "transport vesicle fusion protein" ytyol052c-a - 11,1,0,0 "DDR2" "heat shock protein DDRA2" ytypl069c - 1,6,1,0 "BTS1" "geranylgeranyl diphosphate synthase" ytydr397c - 4,5,1,4 "NCB2" "functional homolog of human NC2beta/Dr1" 40,10,0,0 "NCB2" "functional homolog of human NC2beta/Dr1" ytypl243w - 40,3,0,0 "SRP68" "signal recognition particle protein" 6,4,0,0 "SRP68" "signal recognition particle protein" ytykl016c 13,1,1,3 "ATP7" "F1F0-ATPase complex, FO D subunit" 2,13,0,0 "ATP7" "F1F0-ATPase complex, FO D subunit" 40,16,0,0 "ATP7" "F1F0-ATPase complex, FO D subunit" 67,50,22,0 "ATP7" "F1F0-ATPase complex, FO D subunit" 8,4,0,0 "ATP7" "F1F0-ATPase complex, FO D subunit" ytyer021w - 40,10,0,0 "RPN3" "26S proteasome regulatory subunit" 40,7,0,0 "RPN3" "26S proteasome regulatory subunit" 6,13,1,0 "RPN3" "26S proteasome regulatory subunit" ytydl127w - 3,3,1,0 "PCL2" "cyclin, G1/S-specific" ytylr166c 40,2,0,0 "SEC10" "required for exocytosis" 40,3,0,0 "SEC10" "required for exocytosis" 8,16,0,0 "SEC10" "required for exocytosis" ytq0130 13,1,1,3 "OLI1" "F1F0-ATPase complex, F0 subunit 9" 2,13,0,0 "OLI1" "F1F0-ATPase complex, F0 subunit 9" 40,16,0,0 "OLI1" "F1F0-ATPase complex, F0 subunit 9" 67,50,22,0 "OLI1" "F1F0-ATPase complex, F0 subunit 9" 8,4,0,0 "OLI1" "F1F0-ATPase complex, F0 subunit 9" ytydr308c - 4,5,1,1 "SRB7" "DNA-directed RNA polymerase II holoenzyme and kornberg's mediator (SRB) subcomplex subunit" 40,10,0,0 "SRB7" "DNA-directed RNA polymerase II holoenzyme and kornberg's mediator (SRB) subcomplex subunit" ytykr052c 4,5,5,1 "MRS4" "RNA splicing protein and member of the mitochondrial carrier family (MCF)" 40,16,0,0 "MRS4" "RNA splicing protein and member of the mitochondrial carrier family (MCF)" 8,4,0,0 "MRS4" "RNA splicing protein and member of the mitochondrial carrier family (MCF)" ytyjr095w 1,5,4,0 "SFC1" "succinate-fumarate transporter" 1,5,7,0 "SFC1" "succinate-fumarate transporter" 40,16,0,0 "SFC1" "succinate-fumarate transporter" 67,7,0,0 "SFC1" "succinate-fumarate transporter" 8,4,0,0 "SFC1" "succinate-fumarate transporter" ytyil121w - 11,7,0,0 "null" "similarity to antibiotic resistance proteins" 67,28,0,0 "null" "similarity to antibiotic resistance proteins" ytydr244w 40,19,0,0 "PEX5" "peroxisomal targeting signal receptor" 40,3,0,0 "PEX5" "peroxisomal targeting signal receptor" 6,4,0,0 "PEX5" "peroxisomal targeting signal receptor" 8,10,0,0 "PEX5" "peroxisomal targeting signal receptor" ytygr037c - 1,6,1,0 "ACB1" "acyl-coenzyme-A-binding protein (diazepam binding inhibitor)" 1,6,13,0 "ACB1" "acyl-coenzyme-A-binding protein (diazepam binding inhibitor)" ytygr131w 8,16,0,0 "null" "strong similarity to Nce2p" ytykr035w-a 40,25,0,0 "DID2" "class E vacuolar-protein sorting and endocytosis factor" 6,4,0,0 "DID2" "class E vacuolar-protein sorting and endocytosis factor" 8,13,0,0 "DID2" "class E vacuolar-protein sorting and endocytosis factor" ytyel027w 11,7,0,0 "CUP5" "H+-ATPase V0 domain 17 KD subunit, vacuolar" 13,1,1,3 "CUP5" "H+-ATPase V0 domain 17 KD subunit, vacuolar" 40,25,0,0 "CUP5" "H+-ATPase V0 domain 17 KD subunit, vacuolar" 67,4,1,2 "CUP5" "H+-ATPase V0 domain 17 KD subunit, vacuolar" 67,50,22,0 "CUP5" "H+-ATPase V0 domain 17 KD subunit, vacuolar" 8,13,0,0 "CUP5" "H+-ATPase V0 domain 17 KD subunit, vacuolar" ytyjr005w 40,9,0,0 "APL1" "AP-2 complex subunit, beta2-adaptin, 78 KD" 6,10,0,0 "APL1" "AP-2 complex subunit, beta2-adaptin, 78 KD" 8,19,0,0 "APL1" "AP-2 complex subunit, beta2-adaptin, 78 KD" ytydr168w - 3,3,1,0 "CDC37" "cell division control protein" 6,1,0,0 "CDC37" "cell division control protein" ytymr241w - 3,1,3,0 "YHM2" "yeast suppressor gene of HM (mitochondrial histone) mutant (ABF2)" 40,10,3,0 "YHM2" "yeast suppressor gene of HM (mitochondrial histone) mutant (ABF2)" 40,16,0,0 "YHM2" "yeast suppressor gene of HM (mitochondrial histone) mutant (ABF2)" ytypr113w - 1,6,1,0 "PIS1" "CDP diacylglycerol--inositol 3-phosphatidyltransferase" 40,7,0,0 "PIS1" "CDP diacylglycerol--inositol 3-phosphatidyltransferase" 40,8,0,0 "PIS1" "CDP diacylglycerol--inositol 3-phosphatidyltransferase" ytygl119w - 2,13,0,0 "ABC1" "ubiquinol--cytochrome-c reductase complex assembly protein" 40,16,0,0 "ABC1" "ubiquinol--cytochrome-c reductase complex assembly protein" 6,10,0,0 "ABC1" "ubiquinol--cytochrome-c reductase complex assembly protein" ytygl054c 14,4,3,1 "ERV14" "ER-derived Vesicles" 14,4,3,5 "ERV14" "ER-derived Vesicles" 40,8,0,0 "ERV14" "ER-derived Vesicles" 8,7,0,0 "ERV14" "ER-derived Vesicles" ytynl025c - 1,5,4,0 "SSN8" "DNA-directed RNA polymerase II holoenzyme and Kornberg's mediator (SRB) subcomplex subunit, cyclin C homolog" 3,3,2,0 "SSN8" "DNA-directed RNA polymerase II holoenzyme and Kornberg's mediator (SRB) subcomplex subunit, cyclin C homolog" 4,5,1,1 "SSN8" "DNA-directed RNA polymerase II holoenzyme and Kornberg's mediator (SRB) subcomplex subunit, cyclin C homolog" 40,10,0,0 "SSN8" "DNA-directed RNA polymerase II holoenzyme and Kornberg's mediator (SRB) subcomplex subunit, cyclin C homolog" ytynl121c 40,16,0,0 "TOM70" "mitochondrial outer membrane specialized import receptor" 6,4,0,0 "TOM70" "mitochondrial outer membrane specialized import receptor" 67,99,0,0 "TOM70" "mitochondrial outer membrane specialized import receptor" 8,4,0,0 "TOM70" "mitochondrial outer membrane specialized import receptor" ytyal047c - 3,3,1,0 "SPC72" "STU2P Interactant" ytybr008c - 11,7,0,0 "FLR1" "fluconazole resistance protein" 67,28,0,0 "FLR1" "fluconazole resistance protein" ytymr183c 40,2,0,0 "SSO2" "syntaxin (T-SNARE)" 8,7,0,0 "SSO2" "syntaxin (T-SNARE)" ytyil149c 40,4,0,0 "MLP2" "involved in translocation of macromolecules between the nucleoplasm and the NPC" 8,1,0,0 "MLP2" "involved in translocation of macromolecules between the nucleoplasm and the NPC" ytykr095w - 3,1,5,1 "MLP1" "myosin-like protein related to USO1P" 40,10,0,0 "MLP1" "myosin-like protein related to USO1P" ytybr104w 40,16,0,0 "YMC2" "mitochondrial carrier protein (MCF)" 8,4,0,0 "YMC2" "mitochondrial carrier protein (MCF)" ytylr119w 4,7,0,0 "SRN2" "suppressor of RNA1-1 mutation" 8,1,0,0 "SRN2" "suppressor of RNA1-1 mutation" ytypl134c 67,16,0,0 "ODC1" "similarity to ADP,ATP carrier proteins" 8,4,0,0 "ODC1" "similarity to ADP,ATP carrier proteins" ytybl102w - 40,8,0,0 "SFT2" "suppressor of SED5 ts mutants" ytybr089c-a - 14,1,0,0 "NHP6B" "nonhistone chromosomal protein" 14,4,3,1 "NHP6B" "nonhistone chromosomal protein" 40,10,3,0 "NHP6B" "nonhistone chromosomal protein" ytyor195w - 3,3,1,0 "SLK19" "involved in control of spindle dynamics together with KAR3P" ytygl238w 30,10,0,0 "CSE1" "importin-beta-like protein" 40,10,0,0 "CSE1" "importin-beta-like protein" 6,4,0,0 "CSE1" "importin-beta-like protein" 8,1,0,0 "CSE1" "importin-beta-like protein" ytykl002w 40,25,0,0 "DID4" "class E vacuolar-protein sorting and endocytosis factor" 6,4,0,0 "DID4" "class E vacuolar-protein sorting and endocytosis factor" 8,13,0,0 "DID4" "class E vacuolar-protein sorting and endocytosis factor" ytygr096w 1,3,19,0 "null" "hypothetical mitochondrial transport protein" 67,16,0,0 "null" "hypothetical mitochondrial transport protein" 8,4,0,0 "null" "hypothetical mitochondrial transport protein" ytyfr045w - 67,7,0,0 "null" "similarity to mitochondrial citrate transport proteins" ytykl179c - 3,3,1,0 "null" "similarity to NUF1P" 30,4,0,0 "null" "similarity to NUF1P" ytypl234c 13,1,1,3 "TFP3" "H+-ATPase V0 domain 17 KD subunit, vacuolar" 40,25,0,0 "TFP3" "H+-ATPase V0 domain 17 KD subunit, vacuolar" 6,10,0,0 "TFP3" "H+-ATPase V0 domain 17 KD subunit, vacuolar" 67,4,1,2 "TFP3" "H+-ATPase V0 domain 17 KD subunit, vacuolar" 67,50,22,0 "TFP3" "H+-ATPase V0 domain 17 KD subunit, vacuolar" 8,13,0,0 "TFP3" "H+-ATPase V0 domain 17 KD subunit, vacuolar" ytydr119w - 11,7,0,0 "null" "similarity to B.subtilis tetracyclin resistance" 67,28,0,0 "null" "similarity to B.subtilis tetracyclin resistance" ytynl065w - 11,7,0,0 "AQR1" "similarity to resistance proteins" 67,28,0,0 "AQR1" "similarity to resistance proteins" ytydr468c 30,25,0,0 "TLG1" "member of the syntaxin family of t-SNAREs" 30,7,0,0 "TLG1" "member of the syntaxin family of t-SNAREs" 40,22,0,0 "TLG1" "member of the syntaxin family of t-SNAREs" 40,25,0,0 "TLG1" "member of the syntaxin family of t-SNAREs" 40,8,0,0 "TLG1" "member of the syntaxin family of t-SNAREs" 6,4,0,0 "TLG1" "member of the syntaxin family of t-SNAREs" 8,13,0,0 "TLG1" "member of the syntaxin family of t-SNAREs" 8,19,0,0 "TLG1" "member of the syntaxin family of t-SNAREs" 8,7,0,0 "TLG1" "member of the syntaxin family of t-SNAREs" ytymr112c - 4,5,1,1 "MED11" "mediator complex subunit" 40,10,0,0 "MED11" "mediator complex subunit" ytykl022c - 3,3,1,0 "CDC16" "subunit of anaphase-promoting complex (cyclosome)" 40,10,0,0 "CDC16" "subunit of anaphase-promoting complex (cyclosome)" 40,4,0,0 "CDC16" "subunit of anaphase-promoting complex (cyclosome)" 6,13,1,0 "CDC16" "subunit of anaphase-promoting complex (cyclosome)" 6,7,0,0 "CDC16" "subunit of anaphase-promoting complex (cyclosome)" ytydl119c 40,16,0,0 "null" "similarity to bovine Graves disease carrier protein" 8,4,0,0 "null" "similarity to bovine Graves disease carrier protein" ytyer060w-a 1,3,19,0 "FCY22" "purine/cytosine permease with similarity to FCY2P" 67,16,0,0 "FCY22" "purine/cytosine permease with similarity to FCY2P" 8,99,0,0 "FCY22" "purine/cytosine permease with similarity to FCY2P" ytydr484w 40,4,0,0 "SAC2" "suppressor of actin mutation" 40,8,0,0 "SAC2" "suppressor of actin mutation" 8,7,0,0 "SAC2" "suppressor of actin mutation" ytydr150w - 3,3,1,0 "NUM1" "nuclear migration protein" ytypr190c - 4,1,1,0 "RPC82" "DNA-directed RNA polymerase III, 82 KD subunit" 4,3,1,0 "RPC82" "DNA-directed RNA polymerase III, 82 KD subunit" 40,10,0,0 "RPC82" "DNA-directed RNA polymerase III, 82 KD subunit" ytyer110c 40,10,0,0 "KAP123" "RAN-binding protein" 40,3,0,0 "KAP123" "RAN-binding protein" 6,4,0,0 "KAP123" "RAN-binding protein" 8,1,0,0 "KAP123" "RAN-binding protein" ytyel013w - 30,25,0,0 "VAC8" "required for vacuole inheritance and protein targeting from the cytoplasm to vacuole" 40,25,0,0 "VAC8" "required for vacuole inheritance and protein targeting from the cytoplasm to vacuole" 6,4,0,0 "VAC8" "required for vacuole inheritance and protein targeting from the cytoplasm to vacuole" ytygr120c 40,3,0,0 "SEC35" "required for ER to golgi vesicle docking" 8,7,0,0 "SEC35" "required for ER to golgi vesicle docking" ytykl120w 40,16,0,0 "OAC1" "similarity to mitochondrial uncoupling proteins (MCF)" 67,4,7,0 "OAC1" "similarity to mitochondrial uncoupling proteins (MCF)" 8,4,0,0 "OAC1" "similarity to mitochondrial uncoupling proteins (MCF)" ytycr009c 14,4,3,1 "RVS161" "similarity to human amphiphysin and RVS167P" 14,4,3,3 "RVS161" "similarity to human amphiphysin and RVS167P" 40,4,0,0 "RVS161" "similarity to human amphiphysin and RVS167P" 8,19,0,0 "RVS161" "similarity to human amphiphysin and RVS167P" ytyer018c - 40,5,0,0 "SPC25" "spindle pole body protein" ytq0080 13,1,1,3 "AAP1" "F1F0-ATPase complex, F0 subunit 8" 2,13,0,0 "AAP1" "F1F0-ATPase complex, F0 subunit 8" 40,16,0,0 "AAP1" "F1F0-ATPase complex, F0 subunit 8" 67,50,22,0 "AAP1" "F1F0-ATPase complex, F0 subunit 8" 8,4,0,0 "AAP1" "F1F0-ATPase complex, F0 subunit 8" ytq0085 13,1,1,3 "ATP6" "F1F0-ATPase complex, FO A subunit" 2,13,0,0 "ATP6" "F1F0-ATPase complex, FO A subunit" 40,16,0,0 "ATP6" "F1F0-ATPase complex, FO A subunit" 67,50,22,0 "ATP6" "F1F0-ATPase complex, FO A subunit" 8,4,0,0 "ATP6" "F1F0-ATPase complex, FO A subunit" ytybr162w-a 6,4,0,0 "YSY6" "secretory pathway protein" 8,16,0,0 "YSY6" "secretory pathway protein" ytydl235c - 13,11,3,13 "YPD1" "phosphorelay intermediate between SLN1P and SSK1P" 63,1,0,0 "YPD1" "phosphorelay intermediate between SLN1P and SSK1P" Training Accuracy: 42/91 (46.15%) Training Frequency class '8/0/0/0': 228/1706 (13.36%) Evaluation on validation data (884 items): ytydr079w - 2,13,0,0 "PET100" "cytochrome-c oxidase assembly protein" 40,16,0,0 "PET100" "cytochrome-c oxidase assembly protein" 6,10,0,0 "PET100" "cytochrome-c oxidase assembly protein" ytyor160w 4,7,0,0 "MTR10" "involved in nuclear protein import" 40,10,0,0 "MTR10" "involved in nuclear protein import" 40,3,0,0 "MTR10" "involved in nuclear protein import" 8,1,0,0 "MTR10" "involved in nuclear protein import" ytycr037c - 1,4,7,0 "PHO87" "member of the phosphate permease family" 13,1,3,3 "PHO87" "member of the phosphate permease family" 67,4,7,0 "PHO87" "member of the phosphate permease family" ytyer053c 1,4,7,0 "null" "strong similarity to mitochondrial phosphate carrier protein" 67,4,7,0 "null" "strong similarity to mitochondrial phosphate carrier protein" 8,4,0,0 "null" "strong similarity to mitochondrial phosphate carrier protein" ytyor075w 14,1,0,0 "UFE1" "syntaxin (T-SNARE) of the ER" 14,4,3,5 "UFE1" "syntaxin (T-SNARE) of the ER" 40,7,0,0 "UFE1" "syntaxin (T-SNARE) of the ER" 8,7,0,0 "UFE1" "syntaxin (T-SNARE) of the ER" ytygl205w - 1,6,4,0 "POX1" "acyl-CoA oxidase" 2,25,0,0 "POX1" "acyl-CoA oxidase" 40,19,0,0 "POX1" "acyl-CoA oxidase" ytydr337w - 40,16,0,0 "MRPS28" "ribosomal protein of the small subunit, mitochondrial" 5,1,0,0 "MRPS28" "ribosomal protein of the small subunit, mitochondrial" ytyer142c - 3,1,5,1 "MAG1" "3-methyladenine DNA glycosylase" 40,10,0,0 "MAG1" "3-methyladenine DNA glycosylase" ytyjl179w - 6,1,0,0 "PFD1" "Prefoldin subunit 1" ytypr028w 8,7,0,0 "YIP2" "Ypt-interacting protein" ytylr025w 1,5,4,0 "SNF7" "class E Vps protein" 14,4,3,5 "SNF7" "class E Vps protein" 40,25,0,0 "SNF7" "class E Vps protein" 6,4,0,0 "SNF7" "class E Vps protein" 8,13,0,0 "SNF7" "class E Vps protein" ytydl097c - 40,10,0,0 "RPN6" "subunit of the regulatory particle of the proteasome" 40,7,0,0 "RPN6" "subunit of the regulatory particle of the proteasome" 6,13,1,0 "RPN6" "subunit of the regulatory particle of the proteasome" ytydr427w - 40,10,0,0 "RPN9" "subunit of the regulatory particle of the proteasome" 40,7,0,0 "RPN9" "subunit of the regulatory particle of the proteasome" 6,13,1,0 "RPN9" "subunit of the regulatory particle of the proteasome" ytyor174w - 4,5,1,0 "MED4" "transcription regulation mediator" 40,10,0,0 "MED4" "transcription regulation mediator" ytydr356w - 3,3,1,0 "NUF1" "spindle pole body component" 30,10,0,0 "NUF1" "spindle pole body component" 40,4,0,0 "NUF1" "spindle pole body component" ytygr082w 40,16,0,0 "TOM20" "mitochondrial outer membrane import receptor subunit, 20 kD" 6,4,0,0 "TOM20" "mitochondrial outer membrane import receptor subunit, 20 kD" 67,99,0,0 "TOM20" "mitochondrial outer membrane import receptor subunit, 20 kD" 8,4,0,0 "TOM20" "mitochondrial outer membrane import receptor subunit, 20 kD" ytymr088c - 11,7,0,0 "null" "similarity to multidrug resistance proteins" 67,28,0,0 "null" "similarity to multidrug resistance proteins" ytyil068c 40,2,0,0 "SEC6" "protein transport protein" 40,3,0,0 "SEC6" "protein transport protein" 8,16,0,0 "SEC6" "protein transport protein" ytyor177c - 3,3,2,0 "MPC54" "meiosis-specific component of the SPB" 40,5,0,0 "MPC54" "meiosis-specific component of the SPB" ytybr291c 1,5,7,0 "CTP1" "citrate transport protein, mitochondrial (MCF)" 40,16,0,0 "CTP1" "citrate transport protein, mitochondrial (MCF)" 67,4,7,0 "CTP1" "citrate transport protein, mitochondrial (MCF)" 8,4,0,0 "CTP1" "citrate transport protein, mitochondrial (MCF)" ytyfr033c - 2,13,0,0 "QCR6" "ubiquinol--cytochrome-c reductase 17K protein" 40,16,0,0 "QCR6" "ubiquinol--cytochrome-c reductase 17K protein" ytygl241w 30,10,0,0 "KAP114" "Member of the karyopherin-beta family, nuclear import" 40,10,0,0 "KAP114" "Member of the karyopherin-beta family, nuclear import" 6,4,0,0 "KAP114" "Member of the karyopherin-beta family, nuclear import" 8,1,0,0 "KAP114" "Member of the karyopherin-beta family, nuclear import" ytygr091w - 4,5,5,1 "PRP31" "pre-mRNA splicing protein" 40,10,0,0 "PRP31" "pre-mRNA splicing protein" ytybr017c 40,3,0,0 "KAP104" "beta-karyopherin" 8,1,0,0 "KAP104" "beta-karyopherin" ytylr220w - 13,1,1,99 "CCC1" "involved in calcium regulation" 40,8,0,0 "CCC1" "involved in calcium regulation" ytyor100c 8,4,0,0 "CRC1" "mitochondrial carnitine carrier, member of the mitochondrial carrier (MCF) family" ytydr201w - 40,5,0,0 "SPC19" "spindle pole body protein" ytyhr117w 40,16,0,0 "TOM71" "protein with similarity to TOM70P/Mas70p" 8,4,0,0 "TOM71" "protein with similarity to TOM70P/Mas70p" ytypr058w 40,16,0,0 "YMC1" "mitochondrial carrier protein (MCF)" 67,99,0,0 "YMC1" "mitochondrial carrier protein (MCF)" 8,4,0,0 "YMC1" "mitochondrial carrier protein (MCF)" ytydl040c - 1,6,7,0 "NAT1" "protein N-acetyltransferase subunit" 40,3,0,0 "NAT1" "protein N-acetyltransferase subunit" 5,99,0,0 "NAT1" "protein N-acetyltransferase subunit" 6,7,0,0 "NAT1" "protein N-acetyltransferase subunit" ytybr109c 14,1,3,99 "CMD1" "calmodulin" 14,4,3,1 "CMD1" "calmodulin" 14,4,3,3 "CMD1" "calmodulin" 3,3,1,0 "CMD1" "calmodulin" 40,4,0,0 "CMD1" "calmodulin" 40,5,0,0 "CMD1" "calmodulin" 8,19,0,0 "CMD1" "calmodulin" ytyor198c - 14,4,3,1 "BFR1" "maintenance of normal ploidy" 3,3,1,0 "BFR1" "maintenance of normal ploidy" 3,3,2,0 "BFR1" "maintenance of normal ploidy" ytyhr048w - 11,7,0,0 "null" "similarity to multidrug resistance proteins" 67,28,0,0 "null" "similarity to multidrug resistance proteins" ytypr149w 8,16,0,0 "NCE102" "involved in non-classical protein export pathway" ytydl130w - 40,3,0,0 "RPP1B" "60S large subunit acidic ribosomal protein L44prime" 5,1,0,0 "RPP1B" "60S large subunit acidic ribosomal protein L44prime" ytyor027w - 11,1,0,0 "STI1" "stress-induced protein" 14,1,0,0 "STI1" "stress-induced protein" ytyfl047w - 14,1,3,0 "RGD2" "GTPase activating protein" 62,2,5,0 "RGD2" "GTPase activating protein" ytylr251w - 40,19,0,0 "null" "similarity to peroxisomal rat membrane protein PMP22" ytypl084w - 11,1,0,0 "BRO1" "required for normal response to nutrient limitation" 13,11,3,1 "BRO1" "required for normal response to nutrient limitation" ytycr020c - 4,5,1,4 "PET18" "similarity to regulatory protein" ytyor036w 40,25,0,0 "PEP12" "syntaxin (T-SNARE), vacuolar" 6,4,0,0 "PEP12" "syntaxin (T-SNARE), vacuolar" 8,13,0,0 "PEP12" "syntaxin (T-SNARE), vacuolar" ytypl078c 13,1,1,3 "ATP4" "F1F0-ATPase complex, F0 subunit B" 2,13,0,0 "ATP4" "F1F0-ATPase complex, F0 subunit B" 40,16,0,0 "ATP4" "F1F0-ATPase complex, F0 subunit B" 67,50,22,0 "ATP4" "F1F0-ATPase complex, F0 subunit B" 8,4,0,0 "ATP4" "F1F0-ATPase complex, F0 subunit B" ytylr078c 40,7,0,0 "BOS1" "secretory pathway protein" 40,9,0,0 "BOS1" "secretory pathway protein" 8,7,0,0 "BOS1" "secretory pathway protein" ytydl142c - 1,6,1,0 "CRD1" "cardiolipin synthase" ytyjl154c 30,7,0,0 "VPS35" "protein-sorting protein, vacuolar" 40,22,0,0 "VPS35" "protein-sorting protein, vacuolar" 40,25,0,0 "VPS35" "protein-sorting protein, vacuolar" 40,8,0,0 "VPS35" "protein-sorting protein, vacuolar" 6,4,0,0 "VPS35" "protein-sorting protein, vacuolar" 8,13,0,0 "VPS35" "protein-sorting protein, vacuolar" 8,7,0,0 "VPS35" "protein-sorting protein, vacuolar" ytyjr077c 1,4,7,0 "MIR1" "phosphate transport protein, mitochondrial (MCF)" 13,1,3,3 "MIR1" "phosphate transport protein, mitochondrial (MCF)" 40,16,0,0 "MIR1" "phosphate transport protein, mitochondrial (MCF)" 67,4,7,0 "MIR1" "phosphate transport protein, mitochondrial (MCF)" 8,4,0,0 "MIR1" "phosphate transport protein, mitochondrial (MCF)" ytyor378w - 11,7,0,0 "null" "strong similarity to aminotriazole resistance protein" 67,28,0,0 "null" "strong similarity to aminotriazole resistance protein" ytybr057c - 14,4,3,5 "MUM2" "meiotic protein" 3,3,2,0 "MUM2" "meiotic protein" ytynr001c - 1,5,1,0 "CIT1" "citrate (si)-synthase, mitochondrial" 2,10,0,0 "CIT1" "citrate (si)-synthase, mitochondrial" 40,16,0,0 "CIT1" "citrate (si)-synthase, mitochondrial" ytylr423c - 6,13,0,0 "APG17" "protein involved in authophagy" ytybr067c - 1,6,99,0 "TIP1" "esterase" 11,1,0,0 "TIP1" "esterase" 40,1,0,0 "TIP1" "esterase" ytyhr166c - 3,3,1,0 "CDC23" "subunit of anaphase-promoting complex (cyclosome)" 30,4,0,0 "CDC23" "subunit of anaphase-promoting complex (cyclosome)" 40,10,0,0 "CDC23" "subunit of anaphase-promoting complex (cyclosome)" 6,13,1,0 "CDC23" "subunit of anaphase-promoting complex (cyclosome)" 6,7,0,0 "CDC23" "subunit of anaphase-promoting complex (cyclosome)" ytygr289c - 1,5,7,0 "MAL11" "general alpha-glucoside permease" 67,7,0,0 "MAL11" "general alpha-glucoside permease" ytygl018c - 2,13,0,0 "JAC1" "molecular chaperone" 40,16,0,0 "JAC1" "molecular chaperone" 6,1,0,0 "JAC1" "molecular chaperone" ytyor216c 40,8,0,0 "RUD3" "suppressor of USO1-1 transport defect" 8,7,0,0 "RUD3" "suppressor of USO1-1 transport defect" ytygr036c - 30,1,0,0 "CAX4" "required for full levels of dolichol-linked oligosaccharides in the endoplasmic reticulum" 6,7,0,0 "CAX4" "required for full levels of dolichol-linked oligosaccharides in the endoplasmic reticulum" ytygl033w - 3,3,2,0 "HOP2" "required for pairing of homologous chromosomes" 40,10,3,0 "HOP2" "required for pairing of homologous chromosomes" ytyal030w 40,9,0,0 "SNC1" "synaptic vesicle-associated membrane protein" 8,7,0,0 "SNC1" "synaptic vesicle-associated membrane protein" Validation Accuracy: 22/58 (37.93%) Validation Frequency class '8/0/0/0': 107/884 (12.10%) Evaluation on propertest data (1342 items): ytyal016w - 14,1,0,0 "TPD3" "ser/thr protein phosphatase 2A, regulatory chain A" 14,4,3,1 "TPD3" "ser/thr protein phosphatase 2A, regulatory chain A" 3,3,1,0 "TPD3" "ser/thr protein phosphatase 2A, regulatory chain A" 3,3,3,0 "TPD3" "ser/thr protein phosphatase 2A, regulatory chain A" 4,99,0,0 "TPD3" "ser/thr protein phosphatase 2A, regulatory chain A" ytybr085w 1,3,19,0 "AAC3" "ADP/ATP carrier protein (MCF)" 40,16,0,0 "AAC3" "ADP/ATP carrier protein (MCF)" 67,16,0,0 "AAC3" "ADP/ATP carrier protein (MCF)" 8,4,0,0 "AAC3" "ADP/ATP carrier protein (MCF)" ytyll003w - 11,1,0,0 "SFI1" "similarity to Xenopus laevis XCAP-C" 3,3,1,0 "SFI1" "similarity to Xenopus laevis XCAP-C" ytygr047c - 4,1,1,0 "TFC4" "TFIIIC (transcription initiation factor) subunit, 131 kD" 4,3,1,0 "TFC4" "TFIIIC (transcription initiation factor) subunit, 131 kD" 40,10,0,0 "TFC4" "TFIIIC (transcription initiation factor) subunit, 131 kD" ytyll004w - 14,4,3,3 "ORC3" "origin recognition complex, 62 kDa subunit" 3,1,3,0 "ORC3" "origin recognition complex, 62 kDa subunit" 4,5,1,4 "ORC3" "origin recognition complex, 62 kDa subunit" 40,10,0,0 "ORC3" "origin recognition complex, 62 kDa subunit" ytypr025c - 3,1,5,1 "CCL1" "TFIIH subunit (transcription initiation factor), cyclin C component" 3,3,1,0 "CCL1" "TFIIH subunit (transcription initiation factor), cyclin C component" 4,5,1,1 "CCL1" "TFIIH subunit (transcription initiation factor), cyclin C component" 40,10,0,0 "CCL1" "TFIIH subunit (transcription initiation factor), cyclin C component" ytygr062c - 2,13,0,0 "COX18" "required for activity of mitochondrial cytochrome oxidase" 40,16,0,0 "COX18" "required for activity of mitochondrial cytochrome oxidase" 6,10,0,0 "COX18" "required for activity of mitochondrial cytochrome oxidase" ytyhr099w - 4,5,1,4 "TRA1" "component of the Ada-Spt transcriptional regulatory complex" ytyil134w 1,7,10,0 "FLX1" "FAD carrier protein (MCF), mitochondrial" 40,16,0,0 "FLX1" "FAD carrier protein (MCF), mitochondrial" 67,99,0,0 "FLX1" "FAD carrier protein (MCF), mitochondrial" 8,4,0,0 "FLX1" "FAD carrier protein (MCF), mitochondrial" ytymr076c - 3,3,2,0 "PDS5" "precocious dissociation of sister chromatids" ytyil136w - 40,16,0,0 "OM45" "protein of the outer mitochondrial membrane" ytypl121c - 3,1,5,0 "MEI5" "meiotic protein" 3,3,2,0 "MEI5" "meiotic protein" ytyol069w - 3,3,1,0 "NUF2" "spindle pole body protein" 40,5,0,0 "NUF2" "spindle pole body protein" ytylr390w-a - 30,1,0,0 "CCW14" "Secretory Stress Response protein 1" ytyml091c - 4,3,3,0 "RPM2" "ribonuclease P precursor, mitochondrial" 40,16,0,0 "RPM2" "ribonuclease P precursor, mitochondrial" ytyfl014w - 1,5,1,0 "HSP12" "heat shock protein" 1,6,7,0 "HSP12" "heat shock protein" 11,1,0,0 "HSP12" "heat shock protein" 13,11,3,13 "HSP12" "heat shock protein" 3,1,5,1 "HSP12" "heat shock protein" ytyil075c - 4,3,3,0 "RPN2" "26S proteasome regulatory subunit" 40,10,0,0 "RPN2" "26S proteasome regulatory subunit" 40,7,0,0 "RPN2" "26S proteasome regulatory subunit" 6,13,1,0 "RPN2" "26S proteasome regulatory subunit" ytygr245c - 3,3,1,0 "SDA1" "required for normal organization of the actin cytoskeleton; required for passage through Start" 40,4,0,0 "SDA1" "required for normal organization of the actin cytoskeleton; required for passage through Start" ytybl030c 1,3,19,0 "PET9" "ADP/ATP carrier protein (MCF)" 40,16,0,0 "PET9" "ADP/ATP carrier protein (MCF)" 67,16,0,0 "PET9" "ADP/ATP carrier protein (MCF)" 8,4,0,0 "PET9" "ADP/ATP carrier protein (MCF)" ytybr210w - 14,4,3,1 "null" "strong similarity to D.melanogaster cornichon protein" ytyjr135w-a 40,16,0,0 "TIM8" "delivers Proteins across the intermembrane space of mitochondria to the TIM22 complex" 6,1,0,0 "TIM8" "delivers Proteins across the intermembrane space of mitochondria to the TIM22 complex" 6,4,0,0 "TIM8" "delivers Proteins across the intermembrane space of mitochondria to the TIM22 complex" 8,4,0,0 "TIM8" "delivers Proteins across the intermembrane space of mitochondria to the TIM22 complex" ytynl218w - 3,1,3,0 "MGS1" "similarity to E.coli hypothetical protein in serS 5'region" 30,16,0,0 "MGS1" "similarity to E.coli hypothetical protein in serS 5'region" ytyhl047c - 11,7,0,0 "TAF1" "siderophore transporter for triacetylfusarinine C" 67,28,0,0 "TAF1" "siderophore transporter for triacetylfusarinine C" ytynl153c - 3,3,1,0 "GIM3" "Gim complex component" 30,4,0,0 "GIM3" "Gim complex component" 40,3,0,0 "GIM3" "Gim complex component" 6,1,0,0 "GIM3" "Gim complex component" ytykr016w - 2,13,0,0 "null" "weak similarity to mysoin heavy chain proteins" ytylr309c 30,22,0,0 "IMH1" "involved in vesicular transport" 40,22,0,0 "IMH1" "involved in vesicular transport" 40,25,0,0 "IMH1" "involved in vesicular transport" 6,4,0,0 "IMH1" "involved in vesicular transport" 8,13,0,0 "IMH1" "involved in vesicular transport" 8,7,0,0 "IMH1" "involved in vesicular transport" ytyor035c 14,4,3,3 "SHE4" "required for mother cell-specific gene expression" 67,13,0,0 "SHE4" "required for mother cell-specific gene expression" 8,19,0,0 "SHE4" "required for mother cell-specific gene expression" ytyml104c - 3,3,1,0 "MDM1" "intermediate filament protein" 40,4,0,0 "MDM1" "intermediate filament protein" ytyor130c 1,1,7,0 "ORT1" "ornithine transport protein of mitochondria involved in arginine metabolism, member of the mitochondrial carrier family (MCF)" 40,16,0,0 "ORT1" "ornithine transport protein of mitochondria involved in arginine metabolism, member of the mitochondrial carrier family (MCF)" 67,10,0,0 "ORT1" "ornithine transport protein of mitochondria involved in arginine metabolism, member of the mitochondrial carrier family (MCF)" 8,4,0,0 "ORT1" "ornithine transport protein of mitochondria involved in arginine metabolism, member of the mitochondrial carrier family (MCF)" ytyel006w 67,99,0,0 "null" "similarity to peroxisomal membrane and mitochondrial carrier proteins" 8,4,0,0 "null" "similarity to peroxisomal membrane and mitochondrial carrier proteins" ytypr011c 1,3,19,0 "null" "similarity to ADP/ATP carrier proteins and Graves disease carrier protein" 67,16,0,0 "null" "similarity to ADP/ATP carrier proteins and Graves disease carrier protein" 8,4,0,0 "null" "similarity to ADP/ATP carrier proteins and Graves disease carrier protein" ytypl262w - 2,10,0,0 "FUM1" "fumarate hydratase" 40,16,0,0 "FUM1" "fumarate hydratase" 40,3,0,0 "FUM1" "fumarate hydratase" ytyil120w - 11,7,0,0 "QDR1" "similarity to antibiotic resistance proteins" 67,28,0,0 "QDR1" "similarity to antibiotic resistance proteins" ytydl081c - 40,3,0,0 "RPP1A" "60S large subunit acidic ribosomal protein a1" 5,1,0,0 "RPP1A" "60S large subunit acidic ribosomal protein a1" 5,4,0,0 "RPP1A" "60S large subunit acidic ribosomal protein a1" ytyol119c - 67,99,0,0 "null" "similarity to monocarboxylate transporter proteins" ytymr061w - 4,5,1,4 "RNA14" "component of pre-mRNA 3'-end processing factor CF I" 4,5,5,0 "RNA14" "component of pre-mRNA 3'-end processing factor CF I" 40,10,0,0 "RNA14" "component of pre-mRNA 3'-end processing factor CF I" ytyol039w - 40,3,0,0 "RPP2A" "acidic ribosomal protein P2.beta" 5,1,0,0 "RPP2A" "acidic ribosomal protein P2.beta" ytydl148c - 5,1,0,0 "NOP14" "nuclear and nucleolar protein with possible role in ribosome biogenesis" ytynl003c 67,99,0,0 "PET8" "member of the mitochondrial carrier (MCF) family" 8,4,0,0 "PET8" "member of the mitochondrial carrier (MCF) family" ytylr347c 40,3,0,0 "KAP95" "karyopherin-beta" 6,4,0,0 "KAP95" "karyopherin-beta" 8,1,0,0 "KAP95" "karyopherin-beta" ytydr087c - 4,1,4,0 "RRP1" "involved in processing rRNA precursor species to mature rRNAs" ytykl135c 40,9,0,0 "APL2" "AP-1 complex subunit, beta1-adaptin, 82 KD" 6,10,0,0 "APL2" "AP-1 complex subunit, beta1-adaptin, 82 KD" 8,19,0,0 "APL2" "AP-1 complex subunit, beta1-adaptin, 82 KD" ytyer060w 1,3,19,0 "FCY21" "purine-cytosine permease" 67,16,0,0 "FCY21" "purine-cytosine permease" 8,99,0,0 "FCY21" "purine-cytosine permease" ytydl087c - 4,5,5,1 "LUC7" "yeast U1 snRNP protein with a role in 5' splice site recognition" ytybr003w - 1,6,7,0 "COQ1" "hexaprenyl pyrophosphate synthetase precursor" 1,7,1,0 "COQ1" "hexaprenyl pyrophosphate synthetase precursor" 40,16,0,0 "COQ1" "hexaprenyl pyrophosphate synthetase precursor" ytyor332w 13,1,1,3 "VMA4" "H+-ATPase V1 domain 27 KD subunit, vacuolar" 40,25,0,0 "VMA4" "H+-ATPase V1 domain 27 KD subunit, vacuolar" 6,10,0,0 "VMA4" "H+-ATPase V1 domain 27 KD subunit, vacuolar" 67,4,1,2 "VMA4" "H+-ATPase V1 domain 27 KD subunit, vacuolar" 67,50,22,0 "VMA4" "H+-ATPase V1 domain 27 KD subunit, vacuolar" 8,13,0,0 "VMA4" "H+-ATPase V1 domain 27 KD subunit, vacuolar" ytyil049w - 14,4,3,1 "DFG10" "involved in filamentous growth, cell polarity, and cellular elongation" ytyol158c - 11,7,0,0 "ENB1" "a gene of the major facilitator superfamily encodes a transporter for enterobactin" 67,28,0,0 "ENB1" "a gene of the major facilitator superfamily encodes a transporter for enterobactin" ytyhr018c - 1,1,1,0 "ARG4" "arginosuccinate lyase" 40,3,0,0 "ARG4" "arginosuccinate lyase" ytyhr032w - 11,7,0,0 "ERC1" "ethionine resistance protein" 67,28,0,0 "ERC1" "ethionine resistance protein" ytyhl031c 40,8,0,0 "GOS1" "SNARE protein of Golgi compartment" 6,4,0,0 "GOS1" "SNARE protein of Golgi compartment" 8,7,0,0 "GOS1" "SNARE protein of Golgi compartment" ytyjl026w - 1,3,7,0 "RNR2" "ribonucleoside-diphosphate reductase, small subunit" 3,1,3,0 "RNR2" "ribonucleoside-diphosphate reductase, small subunit" 40,3,0,0 "RNR2" "ribonucleoside-diphosphate reductase, small subunit" ytypr055w 40,3,0,0 "SEC8" "protein transport protein" 8,16,0,0 "SEC8" "protein transport protein" ytybr293w - 11,7,0,0 "null" "similarity to multidrug resistance proteins" 67,28,0,0 "null" "similarity to multidrug resistance proteins" ytygr174c - 2,13,0,0 "CBP4" "ubiquinol--cytochrome-c reductase assembly factor" 40,16,0,0 "CBP4" "ubiquinol--cytochrome-c reductase assembly factor" 6,10,0,0 "CBP4" "ubiquinol--cytochrome-c reductase assembly factor" ytydr382w - 40,3,0,0 "RPP2B" "60S large subunit acidic ribosomal protein" 5,1,0,0 "RPP2B" "60S large subunit acidic ribosomal protein" ytyjl029c 40,8,0,0 "VPS53" "subunit of VP52-54 complex, required for protein sorting at the yeast late Golgi" 8,7,0,0 "VPS53" "subunit of VP52-54 complex, required for protein sorting at the yeast late Golgi" ytybr201w - 40,7,0,0 "DER1" "involved in degradation proteins in the ER" 6,13,99,0 "DER1" "involved in degradation proteins in the ER" ytykl190w - 13,1,1,99 "CNB1" "calcineurin B, regulatory subunit" 14,1,0,0 "CNB1" "calcineurin B, regulatory subunit" 14,4,3,3 "CNB1" "calcineurin B, regulatory subunit" 4,5,1,4 "CNB1" "calcineurin B, regulatory subunit" 40,3,0,0 "CNB1" "calcineurin B, regulatory subunit" ytyor103c - 1,5,1,0 "OST2" "oligosaccharyltransferase epsilon subunit" 40,7,0,0 "OST2" "oligosaccharyltransferase epsilon subunit" 6,7,0,0 "OST2" "oligosaccharyltransferase epsilon subunit" ytyjl140w - 11,1,0,0 "RPB4" "DNA-directed RNA polymerase II, 32 kDa subunit" 4,5,1,1 "RPB4" "DNA-directed RNA polymerase II, 32 kDa subunit" 40,10,0,0 "RPB4" "DNA-directed RNA polymerase II, 32 kDa subunit" ytykl192c - 1,6,1,0 "ACP1" "mitochonrial acyl-carrier protein" 40,16,0,0 "ACP1" "mitochonrial acyl-carrier protein" 67,13,0,0 "ACP1" "mitochonrial acyl-carrier protein" ytybl027w - 40,3,0,0 "RPL19B" "60S large subunit ribosomal protein L19.e" 5,1,0,0 "RPL19B" "60S large subunit ribosomal protein L19.e" ytyer011w - 11,1,0,0 "TIR1" "cold-shock induced protein of the TIR1P,TIP1P family" 40,1,0,0 "TIR1" "cold-shock induced protein of the TIR1P,TIP1P family" ytypl076w - 1,6,1,0 "GPI2" "N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein" 40,7,0,0 "GPI2" "N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein" ytygl195w - 40,3,0,0 "GCN1" "translational activator" 5,7,0,0 "GCN1" "translational activator" ytydr073w - 1,5,4,0 "SNF11" "component of SWI/SNF transcription activator complex" 14,4,3,3 "SNF11" "component of SWI/SNF transcription activator complex" 4,5,1,4 "SNF11" "component of SWI/SNF transcription activator complex" 40,10,0,0 "SNF11" "component of SWI/SNF transcription activator complex" ytykl041w 40,22,0,0 "VPS24" "endosomal Vps protein complex subunit" 6,4,0,0 "VPS24" "endosomal Vps protein complex subunit" 8,13,0,0 "VPS24" "endosomal Vps protein complex subunit" ytydr235w - 4,5,5,1 "PRP42" "U1 snRNP associated protein, required for pre-mRNA splicing" 40,10,0,0 "PRP42" "U1 snRNP associated protein, required for pre-mRNA splicing" ytydr410c - 1,6,7,0 "STE14" "farnesyl cysteine carboxyl-methyltransferase" 40,7,0,0 "STE14" "farnesyl cysteine carboxyl-methyltransferase" 6,7,0,0 "STE14" "farnesyl cysteine carboxyl-methyltransferase" ytydl058w 40,3,0,0 "USO1" "intracellular protein transport protein" 8,7,0,0 "USO1" "intracellular protein transport protein" ytynl328c - 11,1,0,0 "MDJ2" "heat shock protein - chaperone" 40,16,0,0 "MDJ2" "heat shock protein - chaperone" 6,1,0,0 "MDJ2" "heat shock protein - chaperone" ytyor222w 1,3,19,0 "ODC2" "similarity to ADP/ATP carrier proteins" 67,16,0,0 "ODC2" "similarity to ADP/ATP carrier proteins" 8,4,0,0 "ODC2" "similarity to ADP/ATP carrier proteins" ytyjl085w 40,3,0,0 "EXO70" "70 kDa exocyst component protein" 8,16,0,0 "EXO70" "70 kDa exocyst component protein" ytymr055c - 3,3,1,3 "BUB2" "cell cycle arrest protein" ytylr272c - 40,10,3,0 "YCS4" "subunit of condensin protein complex" ytynr013c - 1,4,7,0 "PHO91" "similarity to PHO87P and PHO90P" 13,1,3,3 "PHO91" "similarity to PHO87P and PHO90P" 67,4,7,0 "PHO91" "similarity to PHO87P and PHO90P" ytymr056c 1,3,19,0 "AAC1" "ADP/ATP carrier protein (MCF)" 40,16,0,0 "AAC1" "ADP/ATP carrier protein (MCF)" 67,16,0,0 "AAC1" "ADP/ATP carrier protein (MCF)" 8,4,0,0 "AAC1" "ADP/ATP carrier protein (MCF)" ytyhr190w - 1,6,1,0 "ERG9" "farnesyl-diphosphate farnesyltransferase" 40,7,0,0 "ERG9" "farnesyl-diphosphate farnesyltransferase" Propertest Accuracy: 22/79 (27.85%) Propertest Frequency class '8/0/0/0': 159/1342 (11.85%) New (unknown) data (884 items): ytydr255c - 99,0,0,0 "null" "weak similarity to hypothetical S.pombe hypothetical protein SPBC29A3" ytypr105c - 99,0,0,0 "COD1" "similarity to hypothetical protein SPCC338.13 S. pombe" ytyll005c - 99,0,0,0 "SPO75" "similarity to A.thaliana hyp1 protein" ytyor082c - 99,0,0,0 "null" "questionable ORF" ytyjl011c - 99,0,0,0 "null" "weak similarity to chicken hypothetical protein" ytyml071c - 99,0,0,0 "DOR1" "weak similarity to unnamed ORF Mus musculus brain cDNA" ytyor309c - 99,0,0,0 "null" "questionable ORF" ytylr198c - 99,0,0,0 "null" "questionable ORF" ytypr044c - 99,0,0,0 "null" "questionable ORF" ytykl083w - 99,0,0,0 "null" "questionable ORF" ytylr459w - 98,0,0,0 "CDC91" "cell division control protein" ytypr049c - 99,0,0,0 "CVT9" "similarity to USO1P" ytypr144c - 99,0,0,0 "null" "similarity to YDR060w and C.elegans hypothetical protein" ytyjr134c - 98,0,0,0 "SGM1" "similarity to paramyosin, myosin" ytyjr070c - 99,0,0,0 "null" "similarity to C.elegans hypothetical protein C14A4.1" ytylr064w - 99,0,0,0 "null" "weak similarity to Anopheles NADH-ubiquinone oxidoreductase, chain 4" ytydr393w - 99,0,0,0 "SHE9" "weak similarity to rabbit trichohyalin" ytyjr071w - 99,0,0,0 "null" "questionable ORF" ytyer048w-a - 99,0,0,0 "null" "similarity to D. melanogaster protein" ytyll049w - 99,0,0,0 "null" "hypothetical protein" ytylr068w - 99,0,0,0 "FYV7" "hypothetical protein" ytydr491c - 99,0,0,0 "null" "questionable ORF" ytygr284c - 99,0,0,0 "ERV29" "similarity to mouse Surf-4 protein" ytyhr081w - 99,0,0,0 "null" "weak similarity to human C1D protein" ytykl111c - 99,0,0,0 "null" "questionable ORF" ytypl260w - 99,0,0,0 "null" "similarity to hypothetical protein SPAC30C2.08 S.pombe" ytyjl136w-a - 99,0,0,0 "null" "hypothetical protein - identified by SAGE" ytyor053w - 99,0,0,0 "null" "similarity to protamines" ytydr496c - 99,0,0,0 "PUF6" "similarity to hypothetical human and C.elegans proteins" ytyir043c - 99,0,0,0 "null" "strong similarity to family of COnserved Sequences COS" ytyor215c - 99,0,0,0 "null" "similarity to M.xanthus hypothetical protein" ytyjr003c - 99,0,0,0 "null" "hypothetical protein" ytyol137w - 99,0,0,0 "null" "weak similarity to tetracycline resistance proteins" ytynr025c - 99,0,0,0 "null" "questionable ORF" ytyel045c - 99,0,0,0 "null" "weak similarity to cytochrome c oxidase III of T.brucei kinetoplast" ytylr031w - 99,0,0,0 "null" "similarity to hypothetical protein YMR124w" ytybr101c - 99,0,0,0 "null" "weak similarity to S.pombe hypothetical protein SPBC3B9.01" ytymr119w-a - 99,0,0,0 "null" "questionable ORF" ytyjr044c - 99,0,0,0 "null" "weak similarity to putative transport protein YKR103w" ytyjl028w - 99,0,0,0 "null" "hypothetical protein" ytygl174w - 99,0,0,0 "BUD13" "weak similarity to C.elegans hypothetical protein R08D7.1" ytymr269w - 99,0,0,0 "null" "weak similarity to C.elegans hypothetical protein CELT23B3" ytynl305c - 99,0,0,0 "null" "similarity to C-term. of A.nidulans regulatory protein (qutR)" ytypl233w - 99,0,0,0 "null" "weak similarity to hypothetical protein S. pombe" ytykl099c - 99,0,0,0 "null" "similarity to C.elegans hypothetical proteins C18G6.06 and C16C10.2" ytylr235c - 99,0,0,0 "null" "questionable ORF" ytyfl046w - 99,0,0,0 "null" "weak similarity to middle part of C.elegans myosin heavy chain A" ytygl005c - 99,0,0,0 "COD5" "weak similarity to Xenopus kinesin-related protein Eg5" ytyjr082c - 99,0,0,0 "null" "hypothetical protein" ytymr034c - 99,0,0,0 "null" "weak similarity to YPR201w" ytydl054c - 99,0,0,0 "null" "similarity to hypothetical protein C. albicans" ytyol109w - 98,0,0,0 "ZEO1" "weak similarity to G.hirsutum embryonic abundant protein D-7" ytyjr088c - 99,0,0,0 "null" "weak similarity to S.pombe hypothetical protein SPBC14C8.18c" ytycl026c-b - 99,0,0,0 "null" "strong similarity to FRM2" ytybr242w - 99,0,0,0 "null" "strong similarity to hypothetical protein YGL101w" ytykr047w - 99,0,0,0 "null" "questionable ORF" ytygl204c - 99,0,0,0 "null" "questionable ORF" ytynl013c - 99,0,0,0 "null" "questionable ORF" ytyhr192w - 99,0,0,0 "null" "hypothetical protein" ytymr074c - 99,0,0,0 "null" "strong similarity to hypothetical S. pombe protein" ytycl028w - 98,0,0,0 "RNQ1" "prion, epigenetic modifier of protein function" ytyor164c - 99,0,0,0 "null" "similarity to conserved hypothetical protein S. pombe" ytydr338c - 99,0,0,0 "null" "similarity to ERC1P" ytyor165w - 98,0,0,0 "null" "similarity to E.histolytica surface lectin" ytymr077c - 98,0,0,0 "VPS20" "similarity to SNF7 protein" ytyll023c - 99,0,0,0 "null" "similarity to hypothetical protein YLR064w" ytylr201c - 99,0,0,0 "null" "similarity to hypothetical S. pombe protein" ytycl001w-a - 99,0,0,0 "null" "similarity to DOM34P" ytylr041w - 99,0,0,0 "null" "questionable ORF" ytykr087c - 99,0,0,0 "null" "similarity to hypothetical Myxococcus xanthus protein" ytypr128c - 99,0,0,0 "ANT1" "peroxisomal ATP carrier" ytynl211c - 99,0,0,0 "null" "hypothetical protein" ytykr088c - 99,0,0,0 "null" "weak similarity to b.subtilis spore germination protein II" ytybr016w - 99,0,0,0 "null" "strong similarity to hypothetical proteins YDL012c and YDR210w" ytynl051w - 99,0,0,0 "COD4" "weak similarity to hypothetical protein Drosophila melanogaster" ytycr082w - 99,0,0,0 "null" "weak similarity to RBK1P" ytyhl042w - 99,0,0,0 "null" "similarity to subtelomeric encoded proteins" ytygl010w - 99,0,0,0 "null" "similarity to hypothetical S. pombe protein" ytykr018c - 99,0,0,0 "null" "strong similarity to hypothetical protein YJL082w" ytydl062w - 99,0,0,0 "null" "questionable ORF" ytyml116w-a - 99,0,0,0 "null" "questionable ORF" ytyil041w - 99,0,0,0 "null" "similarity to S.pombe hypothetical protein" ytygl114w - 99,0,0,0 "null" "weak similarity to H.influenzae permease" ytyol038c-a - 99,0,0,0 "null" "hypothetical protein - identified by SAGE" ytyll030c - 99,0,0,0 "null" "hypothetical protein" ytyhl013c - 99,0,0,0 "null" "similarity to C.elegans hypothetical protein F21D5.2" ytyfr008w - 99,0,0,0 "null" "weak similarity to human centromere protein E" ytydr442w - 99,0,0,0 "null" "questionable ORF" ytylr050c - 99,0,0,0 "null" "weak similarity to human MAC30 C-terminus" ytydr179w-a - 99,0,0,0 "null" "hypothetical protein" ytynl297c - 99,0,0,0 "MON2" "similarity to S.pombe hypothetical protein SPAC23D3.13c" ytydr540c - 99,0,0,0 "null" "similarity to E. coli unknown gene" ytylr386w - 99,0,0,0 "null" "similarity to hypothetical S. pombe protein" ytydr383c - 99,0,0,0 "null" "weak similarity to S.pombe paramyosin" ytydr449c - 99,0,0,0 "null" "similarity to hypothetical protein S. pombe" ytyor007c - 99,0,0,0 "SGT2" "similarity to protein phosphatases" ytyer181c - 99,0,0,0 "null" "questionable ORF" ytygr272c - 99,0,0,0 "null" "similarity to hypothetical S.pombe protein SPAC12G12.02" ytylr315w - 99,0,0,0 "null" "weak similarity to rat apolipoprotein A-IV" ytyml030w - 99,0,0,0 "null" "weak similarity to CG9921 D. melanogaster" ytydr486c - 99,0,0,0 "VPS60" "weak similarity to SNF7P" ytyjl082w - 99,0,0,0 "IML2" "strong similarity to hypothetical protein YKR018c" ytyor300w - 99,0,0,0 "null" "questionable ORF" ytydl072c - 99,0,0,0 "null" "weak similarity to hypothetical protein YMR040w" ytydl074c - 99,0,0,0 "BRE1" "weak similarity to spindle pole body protein NUF1" ------------------ Rule 319: seq_transmembraneSpans = 1 seq_cai <= 0.59 ss(_1,_2,c),coil_len(_2,b4_6),beta_dist(_1,b0.0_6.1),coil_dist(_1,b6.2_39.5),nss(_2,_3,b) = 0 ss(_1,_2,c),ss(_1,_3,a),coil_len(_2,b3_4),nss(_3,_4,b),nss(_4,_2,c) = 0 ss(_1,_2,b),beta_len(_2,gte7),coil_dist(_1,b6.2_39.5),nss(_2,_3,a),nss(_3,_4,c) = 0 ss(_1,_2,b),beta_len(_2,b4_6),alpha_dist(_1,gte47.6),coil_dist(_1,b6.2_39.5),nss(_2,_3,a) = 0 ss(_1,_2,b),beta_len(_2,b3_4),alpha_dist(_1,gte47.6),nss(_2,_3,c),nss(_3,_4,b) = 0 ss(_1,_2,b),beta_len(_2,b1_3),beta_dist(_1,gte29.1),coil_dist(_1,b6.2_39.5),nss(_2,_3,c) = 0 ss(_1,_2,b),ss(_1,_3,b),beta_len(_2,gte7),nss(_3,_4,a),nss(_4,_2,b) = 0 -> class 1/0/0/0 "METABOLISM" Evaluation on training data (1706 items): ytybr245c - 4,5,1,4 "ISW1" "strong similarity to D.melanogaster iswi protein" ytyhr003c 1,7,1,0 "null" "strong similarity to molybdopterin-converting factor homolog YKL027w" ytybl068w 1,3,1,0 "PRS4" "ribose-phosphate pyrophosphokinase 3" 1,3,4,0 "PRS4" "ribose-phosphate pyrophosphokinase 3" ytyol064c 1,1,1,0 "MET22" "protein ser/thr phosphatase" 11,1,0,0 "MET22" "protein ser/thr phosphatase" ytymr152w - 40,16,0,0 "YIM1" "mitochondrial inner membrane protease" 6,7,0,0 "YIM1" "mitochondrial inner membrane protease" ytygr061c 1,3,1,0 "ADE6" "5'-phosphoribosylformyl glycinamidine synthetase" 40,3,0,0 "ADE6" "5'-phosphoribosylformyl glycinamidine synthetase" ytynl267w 1,6,1,0 "PIK1" "phosphatidylinositol 4-kinase" 10,1,99,0 "PIK1" "phosphatidylinositol 4-kinase" 3,3,3,0 "PIK1" "phosphatidylinositol 4-kinase" 40,10,0,0 "PIK1" "phosphatidylinositol 4-kinase" ytybr248c 1,1,1,0 "HIS7" "glutamine amidotransferase/cyclase" ytylr277c - 4,5,5,0 "YSH1" "component of pre-mRNA polyadenylation factor PF I" 40,10,0,0 "YSH1" "component of pre-mRNA polyadenylation factor PF I" ytykr066c - 11,7,0,0 "CCP1" "cytochrome-c peroxidase precursor" 40,16,0,0 "CCP1" "cytochrome-c peroxidase precursor" ytynl189w - 30,10,0,0 "SRP1" "karyopherin-alpha or importin" 40,10,0,0 "SRP1" "karyopherin-alpha or importin" 6,4,0,0 "SRP1" "karyopherin-alpha or importin" 8,1,0,0 "SRP1" "karyopherin-alpha or importin" ytyjl187c - 3,3,1,3 "SWE1" "ser/tyr dual-specifity protein kinase" ytypl105c - 40,4,0,0 "null" "similarity to SMY2P" ytyal035w - 40,3,0,0 "FUN12" "general translation factor eIF2 homolog" 5,4,1,0 "FUN12" "general translation factor eIF2 homolog" ytygl207w - 3,1,9,5 "SPT16" "general chromatin factor" 3,3,1,0 "SPT16" "general chromatin factor" 40,10,0,0 "SPT16" "general chromatin factor" ytynl111c 1,6,1,0 "CYB5" "cytochrome b5" ytypl040c - 40,16,0,0 "ISM1" "isoleucine--tRNA ligase, mitochondrial" 5,10,0,0 "ISM1" "isoleucine--tRNA ligase, mitochondrial" ytypr029c - 6,10,0,0 "APL4" "AP-1 complex subunit, gamma-adaptin, 94 KD" 8,19,0,0 "APL4" "AP-1 complex subunit, gamma-adaptin, 94 KD" ytylr026c - 40,8,0,0 "SED5" "syntaxin (T-SNARE)" 8,7,0,0 "SED5" "syntaxin (T-SNARE)" ytynr035c - 40,4,0,0 "ARC35" "subunit of the ARP2/3 complex" 8,22,0,0 "ARC35" "subunit of the ARP2/3 complex" ytyfr015c 1,5,1,0 "GSY1" "UDP glucose--starch glucosyltransferase, isoform 1" 2,19,0,0 "GSY1" "UDP glucose--starch glucosyltransferase, isoform 1" 40,3,0,0 "GSY1" "UDP glucose--starch glucosyltransferase, isoform 1" ytygr241c - 40,2,0,0 "YAP1802" "Yeast Adaptor Protein, member of AP180 protein family" 6,10,0,0 "YAP1802" "Yeast Adaptor Protein, member of AP180 protein family" 8,19,0,0 "YAP1802" "Yeast Adaptor Protein, member of AP180 protein family" ytypl122c - 3,1,5,1 "TFB2" "TFIIH subunit (transcription/repair factor)" 4,5,1,1 "TFB2" "TFIIH subunit (transcription/repair factor)" 40,10,0,0 "TFB2" "TFIIH subunit (transcription/repair factor)" ytypl028w 1,6,1,0 "ERG10" "acetyl-CoA C-acetyltransferase, cytosolic" 40,3,0,0 "ERG10" "acetyl-CoA C-acetyltransferase, cytosolic" ytybr014c 1,3,7,0 "null" "similarity to glutaredoxin" ytyor329c - 6,4,0,0 "SCD5" "suppressor of clathrin deficiency" 8,19,0,0 "SCD5" "suppressor of clathrin deficiency" ytyal054c 1,5,1,0 "ACS1" "acetyl-CoA synthetase" 2,99,0,0 "ACS1" "acetyl-CoA synthetase" 30,1,0,0 "ACS1" "acetyl-CoA synthetase" 40,16,0,0 "ACS1" "acetyl-CoA synthetase" 40,19,0,0 "ACS1" "acetyl-CoA synthetase" ytygr083c - 40,3,0,0 "GCD2" "translation initiation factor eIF2B, 71 kDa (delta) subunit" 5,4,0,0 "GCD2" "translation initiation factor eIF2B, 71 kDa (delta) subunit" ytyfr018c 1,1,99,0 "null" "similarity to human glutaminyl-peptide cyclotransferase" ytykl006c-a - 40,8,0,0 "SFT1" "SNARE-like protein" 8,7,0,0 "SFT1" "SNARE-like protein" ytydr292c - 40,7,0,0 "SRP101" "signal recognition particle receptor, alpha chain" 6,4,0,0 "SRP101" "signal recognition particle receptor, alpha chain" ytydr104c - 14,4,3,5 "SPO71" "protein involved in spore wall formation" ytycl064c 1,1,10,0 "CHA1" "L-serine/L-threonine deaminase" ytydr452w 1,6,4,0 "PHM5" "similarity to human sphingomyelin phosphodiesterase (PIR:S06957)" ytyjr036c - 4,5,5,0 "HUL4" "hect domain E3 ubiquitin-protein ligase" ytymr256c - 2,13,0,0 "COX7" "cytochrome-c oxidase, subunit VII" 40,16,0,0 "COX7" "cytochrome-c oxidase, subunit VII" 6,10,0,0 "COX7" "cytochrome-c oxidase, subunit VII" ytyel058w 1,5,1,0 "PCM1" "phosphoacetylglucosamine mutase" ytydr453c - 11,7,0,0 "null" "strong similarity to thiol-specific antioxidant proteins" ytyer076c - 11,99,0,0 "null" "similarity to killer toxin Khr1p" ytyol088c - 40,7,0,0 "MPD2" "protein disulfide isomerase-related protein" 6,1,0,0 "MPD2" "protein disulfide isomerase-related protein" ytyhr028c - 40,25,0,0 "DAP2" "dipeptidyl aminopeptidase B" 6,13,4,0 "DAP2" "dipeptidyl aminopeptidase B" ytybr284w 1,3,1,0 "null" "similarity to AMP deaminase" ytyil156w - 6,13,1,0 "UBP7" "ubiquitin carboxy terminal hydrolase" ytypr048w 1,6,1,0 "TAH18" "similarity to M.domestica NADPH--ferrihemoprotein reductase and mammalian nitric-oxide synthases" 2,13,0,0 "TAH18" "similarity to M.domestica NADPH--ferrihemoprotein reductase and mammalian nitric-oxide synthases" ytyhr042w 1,6,1,0 "NCP1" "NADPH-cytochrome P450 reductase" 11,7,0,0 "NCP1" "NADPH-cytochrome P450 reductase" 40,7,0,0 "NCP1" "NADPH-cytochrome P450 reductase" ytydl022w 1,5,1,0 "GPD1" "glycerol-3-phosphate dehydrogenase (NAD+), cytoplasmic" 11,1,0,0 "GPD1" "glycerol-3-phosphate dehydrogenase (NAD+), cytoplasmic" 13,11,3,13 "GPD1" "glycerol-3-phosphate dehydrogenase (NAD+), cytoplasmic" 40,3,0,0 "GPD1" "glycerol-3-phosphate dehydrogenase (NAD+), cytoplasmic" ytygl148w 1,1,1,0 "ARO2" "chorismate synthase" 40,3,0,0 "ARO2" "chorismate synthase" ytyjr051w - 11,1,0,0 "OSM1" "osmotic growth protein" 2,10,0,0 "OSM1" "osmotic growth protein" 40,16,0,0 "OSM1" "osmotic growth protein" ytyil171w 1,5,7,0 "HXT12" "strong similarity to sugar transport proteins" 67,7,0,0 "HXT12" "strong similarity to sugar transport proteins" ytyor266w - 11,7,0,0 "PNT1" "pentamidine resistance factor" ytyil172c 1,5,1,0 "null" "identical to FSP2P and similarity to other alpha-glucosidases" 2,19,0,0 "null" "identical to FSP2P and similarity to other alpha-glucosidases" ytynl052w - 2,13,0,0 "COX5A" "cytochrome-c oxidase chain V.A precursor" 40,16,0,0 "COX5A" "cytochrome-c oxidase chain V.A precursor" ytybr018c 1,5,1,0 "GAL7" "UDP-glucose--hexose-1-phosphate uridylyltransferase" 40,3,0,0 "GAL7" "UDP-glucose--hexose-1-phosphate uridylyltransferase" ytyjl115w - 4,5,1,4 "ASF1" "anti-silencing protein" ytydl024c 1,4,1,0 "DIA3" "strong similarity to acid phosphatase" ytymr273c - 11,1,0,0 "ZDS1" "involved in negative regulation of cell polarity" 14,4,3,1 "ZDS1" "involved in negative regulation of cell polarity" 3,3,1,0 "ZDS1" "involved in negative regulation of cell polarity" ytyhr204w 1,5,1,0 "HTM1" "similarity to alpha-mannosidases" ytydr390c - 4,5,5,0 "UBA2" "E1-like (ubiquitin-activating) enzyme" 40,10,0,0 "UBA2" "E1-like (ubiquitin-activating) enzyme" 6,13,1,0 "UBA2" "E1-like (ubiquitin-activating) enzyme" 6,7,0,0 "UBA2" "E1-like (ubiquitin-activating) enzyme" ytyll060c - 11,1,0,0 "GTT2" "glutathione S-transferase" 11,7,0,0 "GTT2" "glutathione S-transferase" ytykl088w - 11,1,0,0 "null" "similarity to C.tropicalis hal3 protein, to C-term. of SIS2P and to hypothetical protein YOR054c" ytynl054w - 40,25,0,0 "VAC7" "vacuolar protein" 6,4,0,0 "VAC7" "vacuolar protein" ytygr248w - 4,3,3,0 "SOL4" "strong similarity to SOL3P" ytymr100w - 14,4,3,1 "MUB1" "involved in budding" ytymr020w 1,7,1,0 "FMS1" "involved in the biosynthesis of pantothenic acid" ytygl180w - 14,4,3,5 "APG1" "essential for autophagocytosis" 40,3,0,0 "APG1" "essential for autophagocytosis" 6,13,4,0 "APG1" "essential for autophagocytosis" 8,13,0,0 "APG1" "essential for autophagocytosis" ytylr398c - 11,7,0,0 "SKI2" "antiviral protein and putative helicase" 40,10,0,0 "SKI2" "antiviral protein and putative helicase" ytyjl132w 1,6,4,0 "null" "weak similarity to human phospholipase D" ytynr058w 1,7,1,0 "BIO3" "DAPA aminotransferase" ytyil002c 1,6,1,0 "INP51" "phosphatidylinositol phosphate 5-phosphatase" 1,6,99,0 "INP51" "phosphatidylinositol phosphate 5-phosphatase" 10,1,99,0 "INP51" "phosphatidylinositol phosphate 5-phosphatase" ytylr305c 1,6,1,0 "STT4" "phosphatidylinositol-4-kinase" 10,1,99,0 "STT4" "phosphatidylinositol-4-kinase" 3,3,1,0 "STT4" "phosphatidylinositol-4-kinase" ytynr059w 1,5,1,0 "MNT4" "similarity to to alpha-1,3-mannosyltransferase" 6,7,0,0 "MNT4" "similarity to to alpha-1,3-mannosyltransferase" ytymr197c - 40,9,0,0 "VTI1" "v-SNARE: involved in Golgi retrograde protein traffic" 6,4,0,0 "VTI1" "v-SNARE: involved in Golgi retrograde protein traffic" 8,7,0,0 "VTI1" "v-SNARE: involved in Golgi retrograde protein traffic" ytylr160c 1,1,10,0 "ASP3D" "L-asparaginase II" 40,1,0,0 "ASP3D" "L-asparaginase II" ytybr131w - 11,7,0,0 "CCZ1" "Calcium Caffeine Zinc sensitivity" ytylr306w - 6,7,0,0 "UBC12" "E2 ubiquitin-conjugating enzyme" ytygl089c - 14,4,3,3 "MF(ALPHA)2" "mating pheromone alpha-2 factor" 40,27,0,0 "MF(ALPHA)2" "mating pheromone alpha-2 factor" ytyil004c - 40,9,0,0 "BET1" "protein transport protein" 8,7,0,0 "BET1" "protein transport protein" ytygl249w - 3,1,5,0 "ZIP2" "required for meiotic recombination and disjunction" 3,3,2,0 "ZIP2" "required for meiotic recombination and disjunction" ytylr067c - 4,99,0,0 "PET309" "required for stability and translation of COX1 mRNA" 40,16,0,0 "PET309" "required for stability and translation of COX1 mRNA" 5,7,0,0 "PET309" "required for stability and translation of COX1 mRNA" ytyhr064c - 11,1,0,0 "PDR13" "regulator protein involved in pleiotropic drug resistance" ytygr267c 1,7,1,0 "FOL2" "GTP cyclohydrolase I" ytydr301w - 4,5,5,0 "CFT1" "pre-mRNA 3'-end processing factor CF II" 40,10,0,0 "CFT1" "pre-mRNA 3'-end processing factor CF II" ytydr061w - 3,1,5,1 "null" "similarity to E.coli modF and photorepair protein phrA" ytyml022w 1,3,1,0 "APT1" "adenine phosphoribosyltransferase" ytyjr059w - 13,11,3,1 "PTK2" "involved in polyamine uptake" 8,99,0,0 "PTK2" "involved in polyamine uptake" ytyir022w - 40,7,0,0 "SEC11" "signal sequence processing protein" 6,7,0,0 "SEC11" "signal sequence processing protein" ytymr200w - 3,3,1,0 "ROT1" "mutant suppresses TOR2 mutation" ytydr397c - 4,5,1,4 "NCB2" "functional homolog of human NC2beta/Dr1" 40,10,0,0 "NCB2" "functional homolog of human NC2beta/Dr1" ytypr180w - 6,13,1,0 "AOS1" "forms together with UBA2P a heterodimeric activating enzyme for SMT3P" 6,7,0,0 "AOS1" "forms together with UBA2P a heterodimeric activating enzyme for SMT3P" ytyer100w - 14,4,3,3 "UBC6" "E2 ubiquitin-conjugating enzyme" 40,10,0,0 "UBC6" "E2 ubiquitin-conjugating enzyme" 40,7,0,0 "UBC6" "E2 ubiquitin-conjugating enzyme" 6,13,1,0 "UBC6" "E2 ubiquitin-conjugating enzyme" 6,7,0,0 "UBC6" "E2 ubiquitin-conjugating enzyme" ytyjl139c 1,5,1,0 "YUR1" "mannosyltransferase" 40,8,0,0 "YUR1" "mannosyltransferase" ytydl141w 1,7,4,0 "BPL1" "biotin holocarboxylase synthetase" 6,7,0,0 "BPL1" "biotin holocarboxylase synthetase" ytydl047w - 14,4,3,1 "SIT4" "ser/thr protein phosphatase" 3,3,1,0 "SIT4" "ser/thr protein phosphatase" ytymr042w 1,1,4,0 "ARG80" "transcription factor involved in arginine metabolism" 1,2,4,0 "ARG80" "transcription factor involved in arginine metabolism" 4,5,1,4 "ARG80" "transcription factor involved in arginine metabolism" 40,10,0,0 "ARG80" "transcription factor involved in arginine metabolism" ytq0110 - 4,5,5,1 "BI2" "mRNA maturase BI2" 40,16,0,0 "BI2" "mRNA maturase BI2" ytyhr068w 1,1,1,0 "DYS1" "deoxyhypusine synthase" ytydr240c - 4,5,5,1 "SNU56" "U1 snRNA protein, no counterpart in mammalian snRNP" 40,10,0,0 "SNU56" "U1 snRNA protein, no counterpart in mammalian snRNP" ytypr183w 1,5,1,0 "DPM1" "dolichyl-phosphate beta-D-mannosyltransferase" 40,7,0,0 "DPM1" "dolichyl-phosphate beta-D-mannosyltransferase" ytydr400w 1,3,1,0 "URH1" "uridine ribohydrolase (EC 3.2.2.1)" ytyol115w - 3,1,3,0 "TRF4" "topoisomerase I-related protein" 3,3,1,0 "TRF4" "topoisomerase I-related protein" 40,10,0,0 "TRF4" "topoisomerase I-related protein" ytynl332w 1,3,4,0 "THI12" "nearly identical to THI5P, THI11 and YDL244w" ytypr184w 1,5,1,0 "GDB1" "similarity to human 4-alpha-glucanotransferase (EC 2.4.1.25)/amylo-1,6-glucosidase (EC 3.2.1.33)" 2,19,0,0 "GDB1" "similarity to human 4-alpha-glucanotransferase (EC 2.4.1.25)/amylo-1,6-glucosidase (EC 3.2.1.33)" ytyfl058w 1,3,4,0 "THI5" "pyrimidine biosynthesis protein" ytymr205c 1,5,1,0 "PFK2" "6-phosphofructokinase, beta subunit" 1,5,4,0 "PFK2" "6-phosphofructokinase, beta subunit" 2,1,0,0 "PFK2" "6-phosphofructokinase, beta subunit" 40,3,0,0 "PFK2" "6-phosphofructokinase, beta subunit" ytynl334c - 11,1,0,0 "SNO2" "strong similarity to hypothetical proteins YFL060c and YMR095c" ytybr073w - 3,1,5,1 "RDH54" "required for mitotic diploid-specific recombination and repair and meiosis" 3,3,2,0 "RDH54" "required for mitotic diploid-specific recombination and repair and meiosis" ytyer025w - 40,3,0,0 "GCD11" "translation initiation factor eIF2 gamma chain" 5,4,0,0 "GCD11" "translation initiation factor eIF2 gamma chain" ytydr242w 1,2,1,0 "AMD2" "amidase" ytykr052c - 4,5,5,1 "MRS4" "RNA splicing protein and member of the mitochondrial carrier family (MCF)" 40,16,0,0 "MRS4" "RNA splicing protein and member of the mitochondrial carrier family (MCF)" 8,4,0,0 "MRS4" "RNA splicing protein and member of the mitochondrial carrier family (MCF)" ytyil107c 1,5,1,0 "PFK26" "6-phosphofructose-2-kinase, isozyme 1" 1,5,4,0 "PFK26" "6-phosphofructose-2-kinase, isozyme 1" 40,3,0,0 "PFK26" "6-phosphofructose-2-kinase, isozyme 1" ytydl067c - 2,13,0,0 "COX9" "cytochrome-c oxidase chain VIIA" 40,16,0,0 "COX9" "cytochrome-c oxidase chain VIIA" 6,10,0,0 "COX9" "cytochrome-c oxidase chain VIIA" ytyel024w - 2,13,0,0 "RIP1" "ubiquinol--cytochrome-c reductase iron-sulfur protein precursor" 40,16,0,0 "RIP1" "ubiquinol--cytochrome-c reductase iron-sulfur protein precursor" ytymr128w - 30,1,0,0 "ECM16" "putative DEAH-box RNA helicase" 40,10,0,0 "ECM16" "putative DEAH-box RNA helicase" ytylr345w 1,5,4,0 "null" "similarity to PFK26P and other 6-phosphofructo-2-kinases" 2,1,0,0 "null" "similarity to PFK26P and other 6-phosphofructo-2-kinases" ytyil043c - 2,13,0,0 "CBR1" "cytochrome-b5 reductase" 40,16,0,0 "CBR1" "cytochrome-b5 reductase" ytygr132c - 3,1,3,0 "PHB1" "prohibitin, antiproliferative protein" 3,3,1,0 "PHB1" "prohibitin, antiproliferative protein" ytydr246w - 40,8,0,0 "TRS23" "TRAPP subunit of 20 kDa involved in targeting and fusion of ER to golgi transport vesicles" 8,7,0,0 "TRS23" "TRAPP subunit of 20 kDa involved in targeting and fusion of ER to golgi transport vesicles" ytykr055w - 14,4,3,1 "RHO4" "GTP-binding protein of the rho family" ytyjl001w - 11,99,0,0 "PRE3" "20S proteasome subunit (beta1)" 14,4,3,5 "PRE3" "20S proteasome subunit (beta1)" 40,10,0,0 "PRE3" "20S proteasome subunit (beta1)" 40,7,0,0 "PRE3" "20S proteasome subunit (beta1)" 6,13,1,0 "PRE3" "20S proteasome subunit (beta1)" ytydr408c 1,3,1,0 "ADE8" "phosphoribosylglycinamide formyltransferase (GART)" 40,3,0,0 "ADE8" "phosphoribosylglycinamide formyltransferase (GART)" ytyjr099w - 40,3,0,0 "YUH1" "ubiquitin-specific protease" 6,13,1,0 "YUH1" "ubiquitin-specific protease" 6,7,0,0 "YUH1" "ubiquitin-specific protease" ytyel042w - 40,8,0,0 "GDA1" "guanosine diphosphatase" 6,7,0,0 "GDA1" "guanosine diphosphatase" ytykl215c 1,1,1,0 "null" "similarity to P. aeruginosa hyuA and hyuB" ytygl038c 1,5,1,0 "OCH1" "alpha-1,6-mannosyltransferase" 40,8,0,0 "OCH1" "alpha-1,6-mannosyltransferase" 6,7,0,0 "OCH1" "alpha-1,6-mannosyltransferase" ytylr284c 1,6,4,0 "ECI1" "delta3-cis-delta2-trans-enoyl-CoA isomerase" 2,25,0,0 "ECI1" "delta3-cis-delta2-trans-enoyl-CoA isomerase" 40,19,0,0 "ECI1" "delta3-cis-delta2-trans-enoyl-CoA isomerase" ytygr231c - 3,1,3,0 "PHB2" "Prohibitin" 3,3,1,0 "PHB2" "Prohibitin" ytyel046c 1,1,1,0 "GLY1" "L-threonine aldolase, low-specific" 1,1,10,0 "GLY1" "L-threonine aldolase, low-specific" ytyjl194w - 3,1,3,0 "CDC6" "cell division control protein" 3,3,1,0 "CDC6" "cell division control protein" 30,2,0,0 "CDC6" "cell division control protein" 40,10,0,0 "CDC6" "cell division control protein" 40,3,0,0 "CDC6" "cell division control protein" ytydr280w - 4,1,4,0 "RRP45" "rRNA processing protein" ytydr507c - 14,4,3,1 "GIN4" "ser/thr protein kinase" 3,3,1,0 "GIN4" "ser/thr protein kinase" 3,3,3,0 "GIN4" "ser/thr protein kinase" ytyel047c - 2,10,0,0 "FRDS1" "soluble fumarate reductase, cytoplasmic" 40,3,0,0 "FRDS1" "soluble fumarate reductase, cytoplasmic" ytymr244w - 2,13,0,0 "null" "similarity to UTH1P, NCA3P, YIL123w and SUN4P" ytynl025c 1,5,4,0 "SSN8" "DNA-directed RNA polymerase II holoenzyme and Kornberg's mediator (SRB) subcomplex subunit, cyclin C homolog" 3,3,2,0 "SSN8" "DNA-directed RNA polymerase II holoenzyme and Kornberg's mediator (SRB) subcomplex subunit, cyclin C homolog" 4,5,1,1 "SSN8" "DNA-directed RNA polymerase II holoenzyme and Kornberg's mediator (SRB) subcomplex subunit, cyclin C homolog" 40,10,0,0 "SSN8" "DNA-directed RNA polymerase II holoenzyme and Kornberg's mediator (SRB) subcomplex subunit, cyclin C homolog" ytydl010w 1,3,7,0 "null" "similarity to hypothetical protein YBR014c and glutaredoxins" ytyfr022w - 11,7,0,0 "null" "similarity to ROD1P" ytyil160c 1,6,7,0 "POT1" "acetyl-CoA C-acyltransferase, peroxisomal" 2,25,0,0 "POT1" "acetyl-CoA C-acyltransferase, peroxisomal" 40,19,0,0 "POT1" "acetyl-CoA C-acyltransferase, peroxisomal" ytykl154w - 40,7,0,0 "SRP102" "signal recognition particle receptor, beta chain" 6,4,0,0 "SRP102" "signal recognition particle receptor, beta chain" ytyil066c 1,3,7,0 "RNR3" "ribonucleotide reductase, repair inducible large subunit" 3,1,3,0 "RNR3" "ribonucleotide reductase, repair inducible large subunit" 3,1,5,1 "RNR3" "ribonucleotide reductase, repair inducible large subunit" 40,3,0,0 "RNR3" "ribonucleotide reductase, repair inducible large subunit" ytygr234w - 11,1,0,0 "YHB1" "flavohemoglobin" 40,3,0,0 "YHB1" "flavohemoglobin" ytygr075c - 4,5,5,1 "PRP38" "pre-mRNA splicing factor" 40,10,0,0 "PRP38" "pre-mRNA splicing factor" ytyhr019c - 5,10,0,0 "DED81" "asparaginyl-tRNA-synthetase" ytybl098w 1,1,10,0 "null" "similarity to human and D.melanogaster kynurenine 3-monooxygenase" 1,7,1,0 "null" "similarity to human and D.melanogaster kynurenine 3-monooxygenase" ytynl029c 1,5,1,0 "KTR5" "putative mannosyltransferase" 6,7,0,0 "KTR5" "putative mannosyltransferase" ytyer148w - 4,1,1,0 "SPT15" "the TATA-binding protein TBP" 4,3,1,0 "SPT15" "the TATA-binding protein TBP" 4,5,1,1 "SPT15" "the TATA-binding protein TBP" 40,10,0,0 "SPT15" "the TATA-binding protein TBP" ytygr158c - 4,1,4,0 "MTR3" "involved in mRNA transport" 4,5,5,0 "MTR3" "involved in mRNA transport" 4,7,0,0 "MTR3" "involved in mRNA transport" 40,10,0,0 "MTR3" "involved in mRNA transport" ytydr380w 1,5,1,0 "ARO10" "similarity to PDC6P, THI3P and to pyruvate decarboxylases" 2,16,0,0 "ARO10" "similarity to PDC6P, THI3P and to pyruvate decarboxylases" ytyol001w 1,4,4,0 "PHO80" "cyclin" 4,5,1,4 "PHO80" "cyclin" 40,10,0,0 "PHO80" "cyclin" ytypl053c 1,5,1,0 "KTR6" "mannosylphosphate transferase" 30,1,0,0 "KTR6" "mannosylphosphate transferase" 6,7,0,0 "KTR6" "mannosylphosphate transferase" ytyer069w 1,1,1,0 "ARG5,6" "acetylglutamate kinase and acetylglutamyl-phosphate reductase" 40,16,0,0 "ARG5,6" "acetylglutamate kinase and acetylglutamyl-phosphate reductase" ytylr387c - 6,13,0,0 "null" "similarity to YBR267w" ytymr264w - 6,13,99,0 "CUE1" "involved in ubiquitination and degradation at the ER surface" ytyor179c - 4,5,5,0 "null" "similarity to BRR5 protein" ytyhl019c - 40,2,0,0 "APM2" "involved in clathrin-independent transport processes" 8,99,0,0 "APM2" "involved in clathrin-independent transport processes" ytybr104w - 40,16,0,0 "YMC2" "mitochondrial carrier protein (MCF)" 8,4,0,0 "YMC2" "mitochondrial carrier protein (MCF)" ytypl134c - 67,16,0,0 "ODC1" "similarity to ADP,ATP carrier proteins" 8,4,0,0 "ODC1" "similarity to ADP,ATP carrier proteins" ytyor099w 1,5,1,0 "KTR1" "mannosyltransferase involved in n-linked and o-linked glycosylation" 40,8,0,0 "KTR1" "mannosyltransferase involved in n-linked and o-linked glycosylation" 6,7,0,0 "KTR1" "mannosyltransferase involved in n-linked and o-linked glycosylation" ytynl299w - 3,3,1,0 "TRF5" "nuclear division protein" ytydl111c - 4,1,4,0 "RRP42" "rRNA processing protein" ytybr199w 1,5,1,0 "KTR4" "alpha-1,2-mannosyltransferase" 6,7,0,0 "KTR4" "alpha-1,2-mannosyltransferase" ytyhr118c - 14,4,3,3 "ORC6" "origin recognition complex, 50 KD subunit" 3,1,3,0 "ORC6" "origin recognition complex, 50 KD subunit" 4,5,1,4 "ORC6" "origin recognition complex, 50 KD subunit" 40,10,0,0 "ORC6" "origin recognition complex, 50 KD subunit" ytyjr046w - 3,1,3,0 "TAH11" "weak similarity to Xenopus vimentin 4" ytymr012w - 30,16,0,0 "CLU1" "translation initiation factor eIF3 (p135 subunit)" 5,4,0,0 "CLU1" "translation initiation factor eIF3 (p135 subunit)" ytykr004c - 30,1,0,0 "ECM9" "involved in cell wall biogenesis and architecture" ytymr186w - 11,1,0,0 "HSC82" "heat shock protein" 40,3,0,0 "HSC82" "heat shock protein" ytygr255c 1,7,1,0 "COQ6" "monooxygenase" ytygr095c - 4,1,4,0 "RRP46" "involved in rRNA processing" ytymr281w 1,6,1,1 "GPI12" "N-acetylglucosaminyl phosphatidylinositol deacetylase" 1,6,1,3 "GPI12" "N-acetylglucosaminyl phosphatidylinositol deacetylase" ytydl019c 1,6,1,0 "OSH2" "similarity to SWH1P" ytyll054c - 4,5,1,4 "null" "similarity to transcription factor PIP2P" ytyer168c - 4,3,6,0 "CCA1" "tRNA nucleotidyltransferase" 40,10,0,0 "CCA1" "tRNA nucleotidyltransferase" 40,16,0,0 "CCA1" "tRNA nucleotidyltransferase" 40,3,0,0 "CCA1" "tRNA nucleotidyltransferase" ytty2b_n - 29,0,0,0 "TY2B" "TY2B protein" ytygr096w 1,3,19,0 "null" "hypothetical mitochondrial transport protein" 67,16,0,0 "null" "hypothetical mitochondrial transport protein" 8,4,0,0 "null" "hypothetical mitochondrial transport protein" ytyjl206c - 4,5,1,4 "null" "similarity to YIL130p and PUT3P" ytyjr063w - 4,1,1,0 "RPA12" "DNA-directed RNA polymerase I, 13.7 KD subunit" 40,10,0,0 "RPA12" "DNA-directed RNA polymerase I, 13.7 KD subunit" ytypl072w - 6,13,0,0 "UBP16" "weak similarity to UBP11P" ytybr044c - 11,1,0,0 "TCM62" "chaperone required for assembly of mitochondrial succinate dehydrogenase" 40,16,0,0 "TCM62" "chaperone required for assembly of mitochondrial succinate dehydrogenase" 6,10,0,0 "TCM62" "chaperone required for assembly of mitochondrial succinate dehydrogenase" ytykl179c - 3,3,1,0 "null" "similarity to NUF1P" 30,4,0,0 "null" "similarity to NUF1P" ytypl154c - 40,25,0,0 "PEP4" "aspartyl protease" 6,13,4,0 "PEP4" "aspartyl protease" 6,7,0,0 "PEP4" "aspartyl protease" ytykl020c - 3,1,9,5 "SPT23" "dosage-dependent suppressor of Ty-induced promotor mutations" 40,10,0,0 "SPT23" "dosage-dependent suppressor of Ty-induced promotor mutations" ytydr468c - 30,25,0,0 "TLG1" "member of the syntaxin family of t-SNAREs" 30,7,0,0 "TLG1" "member of the syntaxin family of t-SNAREs" 40,22,0,0 "TLG1" "member of the syntaxin family of t-SNAREs" 40,25,0,0 "TLG1" "member of the syntaxin family of t-SNAREs" 40,8,0,0 "TLG1" "member of the syntaxin family of t-SNAREs" 6,4,0,0 "TLG1" "member of the syntaxin family of t-SNAREs" 8,13,0,0 "TLG1" "member of the syntaxin family of t-SNAREs" 8,19,0,0 "TLG1" "member of the syntaxin family of t-SNAREs" 8,7,0,0 "TLG1" "member of the syntaxin family of t-SNAREs" ytyhr057c - 11,1,0,0 "CYP2" "peptidyl-prolyl cis-trans isomerase" 40,7,0,0 "CYP2" "peptidyl-prolyl cis-trans isomerase" 6,1,0,0 "CYP2" "peptidyl-prolyl cis-trans isomerase" ytygl257c 1,5,1,0 "MNT2" "alpha-1,3-mannosyltransferases responsible for adding the terminal mannose residues of O-linked oligosaccharides" 6,7,0,0 "MNT2" "alpha-1,3-mannosyltransferases responsible for adding the terminal mannose residues of O-linked oligosaccharides" ytygr194c 1,5,1,0 "XKS1" "xylulokinase" ytyjl143w - 40,16,0,0 "TIM17" "mitochondrial inner membrane import translocase subunit" 6,4,0,0 "TIM17" "mitochondrial inner membrane import translocase subunit" 67,99,0,0 "TIM17" "mitochondrial inner membrane import translocase subunit" 8,4,0,0 "TIM17" "mitochondrial inner membrane import translocase subunit" ytygr006w - 4,5,5,1 "PRP18" "U5 snRNA-associated protein" 40,10,0,0 "PRP18" "U5 snRNA-associated protein" ytydl052c 1,6,1,0 "SLC1" "fatty acyltransferase" 40,99,0,0 "SLC1" "fatty acyltransferase" ytypl075w 1,5,4,0 "GCR1" "transcriptional activator" 4,5,1,4 "GCR1" "transcriptional activator" 40,10,0,0 "GCR1" "transcriptional activator" ytyml016c - 11,1,0,0 "PPZ1" "ser/thr phosphatase required for normal osmoregulation" ytycr005c 1,5,1,0 "CIT2" "citrate (si)-synthase, peroxisomal" 2,22,0,0 "CIT2" "citrate (si)-synthase, peroxisomal" 40,19,0,0 "CIT2" "citrate (si)-synthase, peroxisomal" ytydr231c - 2,11,99,0 "COX20" "in the maturation and assembly of cytochrome oxidase involved protein" 30,16,0,0 "COX20" "in the maturation and assembly of cytochrome oxidase involved protein" 40,16,0,0 "COX20" "in the maturation and assembly of cytochrome oxidase involved protein" ytyil014w 1,5,1,0 "MNT3" "alpha-1,3-mannosyltransferases responsible for adding the terminal mannose residues of O-linked oligosaccharides" 6,7,0,0 "MNT3" "alpha-1,3-mannosyltransferases responsible for adding the terminal mannose residues of O-linked oligosaccharides" ytynl083w - 8,4,0,0 "null" "weak similarity to rabbit peroxisomal Ca-dependent solute carrier" ytyjl146w - 10,1,99,0 "IDS2" "IME2-dependent signaling protein" 14,4,3,5 "IDS2" "IME2-dependent signaling protein" 3,3,2,0 "IDS2" "IME2-dependent signaling protein" ytydr312w - 14,4,3,3 "SSF2" "protein with a potential role in mating" ytyor298w - 14,4,3,5 "MUM3" "required for meiosis" 3,3,2,0 "MUM3" "required for meiosis" ytykl199c - 8,99,0,0 "YKT9" "PTK1-YKT9 overlapping sequences may arise from a gene duplication event involving chromosomes X and XI" ytynl085w - 29,0,0,0 "MKT1" "required for propagation of M2 dsRNA satellite of L-A virus" ytydl217c - 40,16,0,0 "TIM22" "subunit of the TIM22-complex" 6,4,0,0 "TIM22" "subunit of the TIM22-complex" 67,99,0,0 "TIM22" "subunit of the TIM22-complex" 8,4,0,0 "TIM22" "subunit of the TIM22-complex" ytyml115c - 14,4,3,5 "VAN1" "vanadate resistance protein" 3,3,1,0 "VAN1" "vanadate resistance protein" 30,1,0,0 "VAN1" "vanadate resistance protein" 40,8,0,0 "VAN1" "vanadate resistance protein" 6,7,0,0 "VAN1" "vanadate resistance protein" ytydr234w 1,1,1,7 "LYS4" "homoaconitase" 40,16,0,0 "LYS4" "homoaconitase" ytypl176c - 40,2,0,0 "SSP134" "similarity to chinese hamster transferrin receptor protein" 67,4,1,1 "SSP134" "similarity to chinese hamster transferrin receptor protein" ytylr336c - 13,11,3,13 "SGD1" "involved in HOG pathway" ytynr011c - 4,5,5,1 "PRP2" "RNA-dependent ATPase of DEAH box family" 40,10,0,0 "PRP2" "RNA-dependent ATPase of DEAH box family" ytyer019c-a - 6,4,0,0 "SBH2" "ER protein-translocation complex subunit" 67,99,0,0 "SBH2" "ER protein-translocation complex subunit" 8,99,0,0 "SBH2" "ER protein-translocation complex subunit" ytq0080 - 13,1,1,3 "AAP1" "F1F0-ATPase complex, F0 subunit 8" 2,13,0,0 "AAP1" "F1F0-ATPase complex, F0 subunit 8" 40,16,0,0 "AAP1" "F1F0-ATPase complex, F0 subunit 8" 67,50,22,0 "AAP1" "F1F0-ATPase complex, F0 subunit 8" 8,4,0,0 "AAP1" "F1F0-ATPase complex, F0 subunit 8" ytybr162w-a - 6,4,0,0 "YSY6" "secretory pathway protein" 8,16,0,0 "YSY6" "secretory pathway protein" ytyor143c 1,7,1,0 "THI80" "thiamin pyrophosphokinase" ytygl200c - 40,9,0,0 "EMP24" "component of the COPII-coated vesicles, 24 kDa" 8,7,0,0 "EMP24" "component of the COPII-coated vesicles, 24 kDa" ytymr214w - 40,7,0,0 "SCJ1" "homolog of E. coli DnaJ, functions in the endoplasmic reticulum by interaction with KAR2P" 6,4,0,0 "SCJ1" "homolog of E. coli DnaJ, functions in the endoplasmic reticulum by interaction with KAR2P" ytygl040c 1,7,1,0 "HEM2" "porphobilinogen synthase" 40,3,0,0 "HEM2" "porphobilinogen synthase" ytynl169c 1,6,1,0 "PSD1" "phosphatidylserine decarboxylase 1" 40,16,0,0 "PSD1" "phosphatidylserine decarboxylase 1" ytygr109c - 3,1,3,0 "CLB6" "cyclin, B-type" 3,3,1,0 "CLB6" "cyclin, B-type" 3,3,2,0 "CLB6" "cyclin, B-type" ytybl080c - 40,16,0,0 "PET112" "required to maintain rho+ mitochondrial DNA" 5,99,0,0 "PET112" "required to maintain rho+ mitochondrial DNA" ytydr077w - 11,1,0,0 "SED1" "abundant cell surface glycoprotein" 40,2,0,0 "SED1" "abundant cell surface glycoprotein" ytylr098c 1,1,4,0 "CHA4" "transcription factor" 4,5,1,4 "CHA4" "transcription factor" 40,10,0,0 "CHA4" "transcription factor" ytydr172w - 3,3,1,0 "SUP35" "eukaryotic peptide chain release factor GTP-binding subunit" 40,3,0,0 "SUP35" "eukaryotic peptide chain release factor GTP-binding subunit" 5,4,0,0 "SUP35" "eukaryotic peptide chain release factor GTP-binding subunit" ytykr061w 1,5,1,0 "KTR2" "mannosyltransferase" 40,8,0,0 "KTR2" "mannosyltransferase" ytyer116c - 4,99,0,0 "SLX8" "subunit of HEX3P-SLX8P complex, required for cell growth in the absence of SGS1 or TOP3" ytycl024w - 3,3,1,0 "KCC4" "kinase coordinate cell cycle progression with the organization of the peripheralcytoskeleton" 40,4,0,0 "KCC4" "kinase coordinate cell cycle progression with the organization of the peripheralcytoskeleton" ytylr005w - 3,1,5,1 "SSL1" "TFIIH subunit (transcription initiation factor), factor B" 4,5,1,1 "SSL1" "TFIIH subunit (transcription initiation factor), factor B" 5,4,0,0 "SSL1" "TFIIH subunit (transcription initiation factor), factor B" Training Accuracy: 80/220 (36.36%) Training Frequency class '1/0/0/0': 445/1706 (26.08%) Evaluation on validation data (884 items): ytydr079w - 2,13,0,0 "PET100" "cytochrome-c oxidase assembly protein" 40,16,0,0 "PET100" "cytochrome-c oxidase assembly protein" 6,10,0,0 "PET100" "cytochrome-c oxidase assembly protein" ytyal024c - 3,3,1,0 "LTE1" "GDP/GTP exchange factor" ytyor219c - 14,4,3,3 "STE13" "type IV dipeptidyl aminopeptidase" 40,8,0,0 "STE13" "type IV dipeptidyl aminopeptidase" 6,7,0,0 "STE13" "type IV dipeptidyl aminopeptidase" ytydl244w 1,3,4,0 "THI13" "strong similarity to THI5P, YJR156c, YNL332w and A. parasiticus, S.pombe NMT1 protein" ytypl015c - 4,5,1,4 "HST2" "similarity to HST1P and SIR2P" ytyer053c 1,4,7,0 "null" "strong similarity to mitochondrial phosphate carrier protein" 67,4,7,0 "null" "strong similarity to mitochondrial phosphate carrier protein" 8,4,0,0 "null" "strong similarity to mitochondrial phosphate carrier protein" ytypl276w - 2,16,0,0 "null" "identical to a region of YOR388c" ytyll012w 1,6,4,0 "null" "similarity to triacylglycerol lipases" ytybr182c - 4,5,1,4 "SMP1" "MADS-box transcription factor" 40,10,0,0 "SMP1" "MADS-box transcription factor" ytyor075w - 14,1,0,0 "UFE1" "syntaxin (T-SNARE) of the ER" 14,4,3,5 "UFE1" "syntaxin (T-SNARE) of the ER" 40,7,0,0 "UFE1" "syntaxin (T-SNARE) of the ER" 8,7,0,0 "UFE1" "syntaxin (T-SNARE) of the ER" ytyor323c 1,1,1,0 "PRO2" "gamma-glutamyl phosphate reductase" ytymr307w 1,6,99,0 "GAS1" "glycophospholipid-anchored surface glycoprotein" 30,1,0,0 "GAS1" "glycophospholipid-anchored surface glycoprotein" 40,2,0,0 "GAS1" "glycophospholipid-anchored surface glycoprotein" ytydr257c - 4,5,1,4 "RMS1" "regulatory protein" 40,10,0,0 "RMS1" "regulatory protein" ytycl050c 1,3,10,0 "APA1" "ATP adenylyltransferase I" ytydr351w - 14,4,3,1 "SBE2" "bud growth protein" ytynr032w - 2,19,0,0 "PPG1" "phosphoprotein phosphatase PPG catalytic chain" ytygl039w 1,7,1,0 "null" "similarity to V. vinifera dihydroflavonol reductase" ytybr263w 1,3,1,0 "SHM1" "serine hydroxymethyltransferase precursor, mitochondrial" 1,6,1,0 "SHM1" "serine hydroxymethyltransferase precursor, mitochondrial" 40,16,0,0 "SHM1" "serine hydroxymethyltransferase precursor, mitochondrial" ytynr026c - 40,7,0,0 "SEC12" "GDP/GTP exchange factor for SAR1P" 8,19,0,0 "SEC12" "GDP/GTP exchange factor for SAR1P" 8,7,0,0 "SEC12" "GDP/GTP exchange factor for SAR1P" ytyor317w 1,6,1,0 "FAA1" "long-chain-fatty-acid--CoA ligase" 1,6,7,0 "FAA1" "long-chain-fatty-acid--CoA ligase" ytyil143c - 3,1,5,1 "SSL2" "DNA helicase" 4,5,1,1 "SSL2" "DNA helicase" 40,10,0,0 "SSL2" "DNA helicase" ytynl277w 1,1,1,0 "MET2" "homoserine O-acetyltransferase" 40,3,0,0 "MET2" "homoserine O-acetyltransferase" ytydr178w 1,5,1,0 "SDH4" "succinate dehydrogenase membrane anchor subunit for SDH2P" 2,10,0,0 "SDH4" "succinate dehydrogenase membrane anchor subunit for SDH2P" 2,13,0,0 "SDH4" "succinate dehydrogenase membrane anchor subunit for SDH2P" 40,16,0,0 "SDH4" "succinate dehydrogenase membrane anchor subunit for SDH2P" ytynl009w 1,6,4,0 "IDP3" "isocitrate dehydrogenase, NADP-dependent" 2,99,0,0 "IDP3" "isocitrate dehydrogenase, NADP-dependent" 40,19,0,0 "IDP3" "isocitrate dehydrogenase, NADP-dependent" ytyer136w - 40,3,0,0 "GDI1" "GDP dissociation inhibitor" 8,16,0,0 "GDI1" "GDP dissociation inhibitor" ytygr218w - 4,7,0,0 "CRM1" "nuclear export factor, exportin" 40,10,0,0 "CRM1" "nuclear export factor, exportin" 8,1,0,0 "CRM1" "nuclear export factor, exportin" ytydr194c - 4,5,5,1 "MSS116" "RNA helicase of the DEAD box family, mitochondrial" 40,16,0,0 "MSS116" "RNA helicase of the DEAD box family, mitochondrial" ytymr237w 1,5,1,0 "null" "similarity to CHS6 protein" ytyol090w - 3,1,5,0 "MSH2" "DNA mismatch repair protein" 40,10,0,0 "MSH2" "DNA mismatch repair protein" ytyll016w 1,5,4,0 "SDC25" "GDP/GTP exchange factor (GEF)" 13,11,3,1 "SDC25" "GDP/GTP exchange factor (GEF)" 3,3,1,0 "SDC25" "GDP/GTP exchange factor (GEF)" 40,2,0,0 "SDC25" "GDP/GTP exchange factor (GEF)" 62,2,5,0 "SDC25" "GDP/GTP exchange factor (GEF)" ytyjl102w - 40,16,0,0 "MEF2" "translation elongation factor, mitochondrial" 5,4,0,0 "MEF2" "translation elongation factor, mitochondrial" ytyol157c 1,5,1,0 "null" "strong similarity to alpha-glucosidases" 2,19,0,0 "null" "strong similarity to alpha-glucosidases" ytyil072w - 3,1,5,0 "HOP1" "meiosis-specific protein" 3,3,2,0 "HOP1" "meiosis-specific protein" 30,10,3,0 "HOP1" "meiosis-specific protein" 40,10,0,0 "HOP1" "meiosis-specific protein" ytyfl020c - 11,1,0,0 "PAU5" "strong similarity to members of the SRP1P/TIP1P family" ytypl042c 1,5,4,0 "SSN3" "cyclin-dependent CTD kinase" 3,3,2,0 "SSN3" "cyclin-dependent CTD kinase" 4,5,1,4 "SSN3" "cyclin-dependent CTD kinase" 40,10,0,0 "SSN3" "cyclin-dependent CTD kinase" ytylr390w - 30,1,0,0 "ECM19" "involved in cell wall biogenesis and architecture" ytypl050c 1,5,1,0 "MNN9" "required for complex N-glycosylation" 30,1,0,0 "MNN9" "required for complex N-glycosylation" 40,8,0,0 "MNN9" "required for complex N-glycosylation" 6,7,0,0 "MNN9" "required for complex N-glycosylation" ytypr119w - 14,4,3,1 "CLB2" "cyclin, G2/M-specific" 3,3,1,0 "CLB2" "cyclin, G2/M-specific" ytyhr120w - 3,1,5,0 "MSH1" "DNA mismatch repair protein, mitochondrial" 40,16,0,0 "MSH1" "DNA mismatch repair protein, mitochondrial" ytymr001c - 3,1,3,0 "CDC5" "involved in regulation of DNA replication" 3,3,1,0 "CDC5" "involved in regulation of DNA replication" 40,10,0,0 "CDC5" "involved in regulation of DNA replication" ytyil155c 1,5,1,0 "GUT2" "glycerol-3-phosphate dehydrogenase, mitochondrial" 40,16,0,0 "GUT2" "glycerol-3-phosphate dehydrogenase, mitochondrial" ytyhr201c 1,4,1,0 "PPX1" "exopolyphosphatase" 40,3,0,0 "PPX1" "exopolyphosphatase" ytynr045w - 40,16,0,0 "PET494" "translational activator, mitochondrial" 5,7,0,0 "PET494" "translational activator, mitochondrial" ytydl101c - 10,1,99,0 "DUN1" "protein kinase" 3,1,5,1 "DUN1" "protein kinase" 40,10,0,0 "DUN1" "protein kinase" ytybl005w - 11,7,0,0 "PDR3" "pleiotropic drug resistance regulatory protein" 4,5,1,4 "PDR3" "pleiotropic drug resistance regulatory protein" 40,10,0,0 "PDR3" "pleiotropic drug resistance regulatory protein" ytyor337w - 4,5,1,4 "TEA1" "TY1 enhancer activator" 40,10,0,0 "TEA1" "TY1 enhancer activator" ytyal055w - 8,10,0,0 "PEX22" "peroxisomal matrix protein import" ytygr091w - 4,5,5,1 "PRP31" "pre-mRNA splicing protein" 40,10,0,0 "PRP31" "pre-mRNA splicing protein" ytygl075c - 3,3,1,0 "MPS2" "Protein of the nuclear envelope/endoplasmic reticulum required for spindle pole body assembly and normal chromosome segregation" 40,5,0,0 "MPS2" "Protein of the nuclear envelope/endoplasmic reticulum required for spindle pole body assembly and normal chromosome segregation" ytyil085c 1,5,1,0 "KTR7" "putative alpha-1,2-mannosyltransferase" 6,7,0,0 "KTR7" "putative alpha-1,2-mannosyltransferase" ytynl132w - 10,1,99,0 "KRE33" "similarity to A.ambisexualis antheridiol steroid receptor" ytydr375c - 40,16,0,0 "BCS1" "mitochondrial protein of the CDC48/PAS1/SEC18 (AAA) family of ATPases" 6,10,0,0 "BCS1" "mitochondrial protein of the CDC48/PAS1/SEC18 (AAA) family of ATPases" 67,50,22,0 "BCS1" "mitochondrial protein of the CDC48/PAS1/SEC18 (AAA) family of ATPases" ytyml088w - 6,13,1,0 "UFO1" "involved in degradation of HO protein" ytyjr126c - 13,1,1,1 "null" "similarity to human prostate-specific membrane antigen and transferrin receptor protein" ytyhr117w - 40,16,0,0 "TOM71" "protein with similarity to TOM70P/Mas70p" 8,4,0,0 "TOM71" "protein with similarity to TOM70P/Mas70p" ytyal058w - 40,7,0,0 "CNE1" "calnexin, involved in regulation of secretion" ytyhr132c - 30,1,0,0 "ECM14" "involved in cell wall biogenesis and architecture" ytyer086w 1,1,1,0 "ILV1" "anabolic serine and threonine dehydratase precursor" 40,16,0,0 "ILV1" "anabolic serine and threonine dehydratase precursor" ytyor370c 1,6,7,0 "MRS6" "geranylgeranyltransferase regulatory subunit" 40,3,0,0 "MRS6" "geranylgeranyltransferase regulatory subunit" 40,7,0,0 "MRS6" "geranylgeranyltransferase regulatory subunit" 40,8,0,0 "MRS6" "geranylgeranyltransferase regulatory subunit" 6,7,0,0 "MRS6" "geranylgeranyltransferase regulatory subunit" ytylr070c 1,5,1,0 "null" "strong similarity to sugar dehydrogenases" ytydr464w - 4,5,1,4 "SPP41" "negative regulator of PRP3 and PRP4 gene expression" ytylr231c 1,1,10,0 "null" "strong similarity to rat kynureninase" 1,7,1,0 "null" "strong similarity to rat kynureninase" ytylr151c 1,7,99,0 "PCD1" "peroxisomal nudix hydrolase, has diphosphatase activity specific for coenzyme A and CoA derivatives" ytygr264c - 40,3,0,0 "MES1" "methionyl-tRNA synthetase" 5,10,0,0 "MES1" "methionyl-tRNA synthetase" ytyel017c-a - 13,1,1,3 "PMP2" "H+-ATPase subunit, plasma membrane" 40,2,0,0 "PMP2" "H+-ATPase subunit, plasma membrane" 67,4,1,2 "PMP2" "H+-ATPase subunit, plasma membrane" 67,50,22,0 "PMP2" "H+-ATPase subunit, plasma membrane" ytyjl221c 1,5,1,0 "FSP2" "strong similarity to alpha-D-glucosidase" 2,19,0,0 "FSP2" "strong similarity to alpha-D-glucosidase" ytyfl051c - 40,1,0,0 "null" "strong similarity to FLO1P, FLO5P and FLO9P - putative pseudogene" ytybl019w - 3,1,5,1 "APN2" "AP endonuclease, exonuclease III homolog" ytylr153c 1,5,1,0 "ACS2" "acetyl-coenzyme A synthetase" 2,99,0,0 "ACS2" "acetyl-coenzyme A synthetase" ytydr481c 1,4,1,0 "PHO8" "repressible alkaline phosphatase vacuolar" 40,25,0,0 "PHO8" "repressible alkaline phosphatase vacuolar" ytybr037c - 13,1,1,1 "SCO1" "involved in stabilization of COX1P and COX2P" 40,16,0,0 "SCO1" "involved in stabilization of COX1P and COX2P" 6,10,0,0 "SCO1" "involved in stabilization of COX1P and COX2P" ytydr213w 1,6,99,0 "UPC2" "regulatory protein involved in control of sterol uptake" 4,5,1,4 "UPC2" "regulatory protein involved in control of sterol uptake" ytyor018w - 11,7,0,0 "ROD1" "O-dinitrobenzene,calcium and zinc resistance protein" ytyfr055w 1,1,1,0 "null" "strong similarity to beta-cystathionases" ytyjl216c 1,5,1,0 "null" "strong similarity to Mal62p" 2,19,0,0 "null" "strong similarity to Mal62p" ytyjr139c 1,1,1,0 "HOM6" "homoserine dehydrogenase" ytyor106w - 40,25,0,0 "VAM3" "syntaxin (t-SNARE)" 6,10,0,0 "VAM3" "syntaxin (t-SNARE)" 8,13,0,0 "VAM3" "syntaxin (t-SNARE)" ytynl160w - 11,1,0,0 "YGP1" "secreted glycoprotein" 40,27,0,0 "YGP1" "secreted glycoprotein" ytyol031c - 40,7,0,0 "null" "weak similarity to Y.lipolytica SLS1 protein precursor" 6,1,0,0 "null" "weak similarity to Y.lipolytica SLS1 protein precursor" 6,4,0,0 "null" "weak similarity to Y.lipolytica SLS1 protein precursor" ytyer099c 1,3,1,0 "PRS2" "ribose-phosphate pyrophosphokinase" 1,3,4,0 "PRS2" "ribose-phosphate pyrophosphokinase" ytydl045c 1,7,1,0 "FAD1" "flavin adenine dinucleotide (FAD) synthetase" 40,3,0,0 "FAD1" "flavin adenine dinucleotide (FAD) synthetase" ytyir030c 1,2,4,0 "DCG1" "involved in nitrogen-catabolite metabolism" 30,1,0,0 "DCG1" "involved in nitrogen-catabolite metabolism" ytyor107w - 10,1,5,5 "RGS2" "negative regulator of glucose-induced cAMP signaling pathway" 62,2,5,0 "RGS2" "negative regulator of glucose-induced cAMP signaling pathway" ytylr069c - 40,16,0,0 "MEF1" "translation elongation factor G, mitochondrial" 5,4,2,0 "MEF1" "translation elongation factor G, mitochondrial" ytypr159w 1,5,1,0 "KRE6" "glucan synthase subunit" 14,1,0,0 "KRE6" "glucan synthase subunit" 30,1,0,0 "KRE6" "glucan synthase subunit" 40,8,0,0 "KRE6" "glucan synthase subunit" ytybl037w - 40,9,0,0 "APL3" "AP-2 complex subunit, alpha-adaptin, 113 KD" 6,10,0,0 "APL3" "AP-2 complex subunit, alpha-adaptin, 113 KD" 8,19,0,0 "APL3" "AP-2 complex subunit, alpha-adaptin, 113 KD" ytybr222c 1,6,1,0 "FAT2" "AMP-binding protein, peroxisomal" 40,19,0,0 "FAT2" "AMP-binding protein, peroxisomal" ytyhr066w - 14,4,3,3 "SSF1" "mating protein" 40,10,0,0 "SSF1" "mating protein" ytyir024c - 3,3,1,0 "GIF1" "G1 Factor needed for normal G1 phase" ytyhr161c - 40,2,0,0 "YAP1801" "Yeast Adaptor Protein, member of AP180 protein family" 6,10,0,0 "YAP1801" "Yeast Adaptor Protein, member of AP180 protein family" 8,19,0,0 "YAP1801" "Yeast Adaptor Protein, member of AP180 protein family" ytydr304c - 40,7,0,0 "CYP5" "peptidyl-prolyl cis-trans isomerase D precursor(cyclophilin D) of the ER" 6,1,0,0 "CYP5" "peptidyl-prolyl cis-trans isomerase D precursor(cyclophilin D) of the ER" ytylr251w - 40,19,0,0 "null" "similarity to peroxisomal rat membrane protein PMP22" ytyel011w 1,5,1,0 "GLC3" "1,4-glucan branching enzyme (glycogen branching enzyme)" 2,19,0,0 "GLC3" "1,4-glucan branching enzyme (glycogen branching enzyme)" 40,3,0,0 "GLC3" "1,4-glucan branching enzyme (glycogen branching enzyme)" ytyjr156c 1,3,4,0 "THI11" "thiamine regulated gene, homologous to nmt1a in S. pombe" ytyer014w 1,7,1,0 "HEM14" "protoporphyrinogen oxidase, mitochondrial" 40,16,0,0 "HEM14" "protoporphyrinogen oxidase, mitochondrial" ytylr078c - 40,7,0,0 "BOS1" "secretory pathway protein" 40,9,0,0 "BOS1" "secretory pathway protein" 8,7,0,0 "BOS1" "secretory pathway protein" ytynl244c - 40,3,0,0 "SUI1" "translation initiation factor 3 (eIF3)" 5,4,0,0 "SUI1" "translation initiation factor 3 (eIF3)" ytycr101c - 6,4,0,0 "null" "strong similarity to PEP1P, VTH1P and VTH22p" ytyjr077c 1,4,7,0 "MIR1" "phosphate transport protein, mitochondrial (MCF)" 13,1,3,3 "MIR1" "phosphate transport protein, mitochondrial (MCF)" 40,16,0,0 "MIR1" "phosphate transport protein, mitochondrial (MCF)" 67,4,7,0 "MIR1" "phosphate transport protein, mitochondrial (MCF)" 8,4,0,0 "MIR1" "phosphate transport protein, mitochondrial (MCF)" ytylr093c - 40,25,0,0 "NYV1" "v-SNARE, vacuolar" 6,10,0,0 "NYV1" "v-SNARE, vacuolar" ytyar020c - 11,1,0,0 "PAU7" "strong similarity to members of the SRP1P/TIP1P family" ytymr043w 1,1,4,0 "MCM1" "transcription factor of the MADS box family" 1,2,4,0 "MCM1" "transcription factor of the MADS box family" 1,5,4,0 "MCM1" "transcription factor of the MADS box family" 1,6,10,0 "MCM1" "transcription factor of the MADS box family" 11,1,0,0 "MCM1" "transcription factor of the MADS box family" 11,7,0,0 "MCM1" "transcription factor of the MADS box family" 14,4,3,3 "MCM1" "transcription factor of the MADS box family" 14,4,3,5 "MCM1" "transcription factor of the MADS box family" 3,3,1,0 "MCM1" "transcription factor of the MADS box family" 4,5,1,4 "MCM1" "transcription factor of the MADS box family" 40,10,0,0 "MCM1" "transcription factor of the MADS box family" ytymr109w - 14,4,3,1 "MYO5" "myosin I" 40,4,0,0 "MYO5" "myosin I" 8,22,0,0 "MYO5" "myosin I" ytq0120 - 4,5,5,1 "BI4" "mRNA maturase BI4" 40,16,0,0 "BI4" "mRNA maturase BI4" ytyil111w - 2,13,0,0 "COX5B" "cytochrome-c oxidase chain Vb" 40,16,0,0 "COX5B" "cytochrome-c oxidase chain Vb" ytyjl156c - 13,11,3,1 "SSY5" "part of an extracellular amino acid sensor" ytyhr171w - 30,25,0,0 "APG7" "component of the autophagic system" 40,25,0,0 "APG7" "component of the autophagic system" ytyor141c - 40,4,0,0 "ARP8" "Actin-related protein" ytyor388c - 2,16,0,0 "FDH1" "strong similarity to H.polymorpha formate dehydrogenase" ytycl007c - 30,1,0,0 "CWH36" "affects the mannoprotein layer of the cell wall" ytymr220w 1,6,1,0 "ERG8" "phosphomevalonate kinase" 40,3,0,0 "ERG8" "phosphomevalonate kinase" ytylr096w - 40,2,0,0 "KIN2" "ser/thr protein kinase" ytydr083w - 4,1,4,0 "RRP8" "protein involved in cleavage at site A2 in pre-rRNA in the pathway of ribosomal RNA processing" ytyml131w 1,6,1,0 "null" "similarity to human leukotriene b4 12-hydroxydehydrogenase" ytymr302c - 4,1,99,0 "PRP12" "involved in early maturation of pre-rRNA" 40,16,0,0 "PRP12" "involved in early maturation of pre-rRNA" ytyor303w 1,1,1,0 "CPA1" "arginine-specific carbamoylphosphate synthase, small chain" 40,3,0,0 "CPA1" "arginine-specific carbamoylphosphate synthase, small chain" ytybr229c 1,5,1,0 "ROT2" "glucosidase II, catalytic subunit" 2,19,0,0 "ROT2" "glucosidase II, catalytic subunit" 40,7,0,0 "ROT2" "glucosidase II, catalytic subunit" ytyll001w - 40,16,0,0 "DNM1" "dynamin-related protein" ytyor217w - 3,1,3,0 "RFC1" "DNA replication factor C, 95 KD subunit" 3,3,1,0 "RFC1" "DNA replication factor C, 95 KD subunit" 40,10,0,0 "RFC1" "DNA replication factor C, 95 KD subunit" ytydr245w 1,5,1,0 "MNN10" "subunit of mannosyltransferase complex" 14,4,3,1 "MNN10" "subunit of mannosyltransferase complex" 40,7,0,0 "MNN10" "subunit of mannosyltransferase complex" 6,7,0,0 "MNN10" "subunit of mannosyltransferase complex" ytypl259c - 30,8,0,0 "APM1" "AP-1 complex subunit, mu1 subunit, 54 KD" 40,9,0,0 "APM1" "AP-1 complex subunit, mu1 subunit, 54 KD" 6,4,0,0 "APM1" "AP-1 complex subunit, mu1 subunit, 54 KD" 8,7,0,0 "APM1" "AP-1 complex subunit, mu1 subunit, 54 KD" ytyir039c - 6,7,0,0 "YPS6" "GPI-anchored aspartic protease (Yapsin 6)" ytylr360w - 6,4,0,0 "VPS38" "protein involved in vacuolar sorting" ytyal030w - 40,9,0,0 "SNC1" "synaptic vesicle-associated membrane protein" 8,7,0,0 "SNC1" "synaptic vesicle-associated membrane protein" Validation Accuracy: 47/124 (37.90%) Validation Frequency class '1/0/0/0': 238/884 (26.92%) Evaluation on propertest data (1342 items): ytylr020c 1,6,4,0 "null" "similarity to triacylglycerol lipase" ytygl203c - 40,8,0,0 "KEX1" "carboxypeptidase (YSC-alpha)" 6,7,0,0 "KEX1" "carboxypeptidase (YSC-alpha)" ytyjl088w 1,1,1,0 "ARG3" "ornithine carbamoyltransferase" 40,3,0,0 "ARG3" "ornithine carbamoyltransferase" ytypl007c - 4,5,1,0 "TFC8" "RNA Polymerase III transcription initiation factor TFIIIC (tau), 60 kDa subunit" ytygr060w 1,6,1,0 "ERG25" "C-4 sterol methyl oxidase" 40,7,0,0 "ERG25" "C-4 sterol methyl oxidase" ytyer052c 1,1,1,0 "HOM3" "L-aspartate 4-P-transferase" ytyjl183w - 6,7,2,0 "MNN11" "related to MNN10P, and in a complex containing other MNN gene products" ytydr415c - 6,99,0,0 "null" "strong similarity to bacterial leucyl aminopeptidase" ytypl101w - 4,5,1,0 "ELP4" "RNA polymerase II Elongator protein subunit" ytyll004w - 14,4,3,3 "ORC3" "origin recognition complex, 62 kDa subunit" 3,1,3,0 "ORC3" "origin recognition complex, 62 kDa subunit" 4,5,1,4 "ORC3" "origin recognition complex, 62 kDa subunit" 40,10,0,0 "ORC3" "origin recognition complex, 62 kDa subunit" ytyar035w 1,6,13,0 "YAT1" "carnitine acetyltransferase, mitochondrial" 40,16,0,0 "YAT1" "carnitine acetyltransferase, mitochondrial" 67,99,0,0 "YAT1" "carnitine acetyltransferase, mitochondrial" 8,4,0,0 "YAT1" "carnitine acetyltransferase, mitochondrial" ytyel036c - 40,8,0,0 "ANP1" "required for protein glycosylation in the golgi" 6,7,0,0 "ANP1" "required for protein glycosylation in the golgi" ytybr087w - 3,1,3,0 "RFC5" "DNA replication factor C, 40 KD subunit" 3,3,1,3 "RFC5" "DNA replication factor C, 40 KD subunit" 40,10,0,0 "RFC5" "DNA replication factor C, 40 KD subunit" ytyal019w - 3,1,5,1 "FUN30" "similarity to helicases of the SNF2/RAD54 family" 40,10,0,0 "FUN30" "similarity to helicases of the SNF2/RAD54 family" ytynl188w - 14,4,3,3 "KAR1" "cell division control protein" 3,3,1,0 "KAR1" "cell division control protein" 40,5,0,0 "KAR1" "cell division control protein" ytydr097c - 3,1,5,0 "MSH6" "DNA mismatch repair protein" 40,10,0,0 "MSH6" "DNA mismatch repair protein" ytypr026w 1,5,1,0 "ATH1" "acid trehalase, vacuolar" 11,1,0,0 "ATH1" "acid trehalase, vacuolar" 2,19,0,0 "ATH1" "acid trehalase, vacuolar" 40,25,0,0 "ATH1" "acid trehalase, vacuolar" ytylr452c - 13,11,3,7 "SST2" "involved in desensitization to alpha-factor pheromone" 14,4,3,3 "SST2" "involved in desensitization to alpha-factor pheromone" 40,2,0,0 "SST2" "involved in desensitization to alpha-factor pheromone" 6,13,1,0 "SST2" "involved in desensitization to alpha-factor pheromone" ytygr143w 1,5,1,0 "SKN1" "glucan synthase subunit" 40,8,0,0 "SKN1" "glucan synthase subunit" ytyer055c 1,1,1,0 "HIS1" "ATP phosphoribosyltransferase" 1,1,4,0 "HIS1" "ATP phosphoribosyltransferase" ytykl144c - 4,1,1,0 "RPC25" "DNA-direcred RNA polymerase III, 25 KD subunit" 4,3,1,0 "RPC25" "DNA-direcred RNA polymerase III, 25 KD subunit" 40,10,0,0 "RPC25" "DNA-direcred RNA polymerase III, 25 KD subunit" ytyhr007c 1,6,1,0 "ERG11" "cytochrome P450 lanosterol 14a-demethylase" 11,7,1,0 "ERG11" "cytochrome P450 lanosterol 14a-demethylase" 40,7,0,0 "ERG11" "cytochrome P450 lanosterol 14a-demethylase" ytylr105c - 4,3,3,0 "SEN2" "tRNA splicing endonuclease beta subunit" 40,10,0,0 "SEN2" "tRNA splicing endonuclease beta subunit" ytygr144w 1,7,99,0 "THI4" "involved in thiamine biosynthesis and DNA repair" 3,1,5,1 "THI4" "involved in thiamine biosynthesis and DNA repair" ytymr250w 1,1,1,0 "GAD1" "similarity to glutamate decarboxylases" ytyol148c - 4,5,1,4 "SPT20" "member of the TBP class of SPT proteins that alter transcription site selection" 40,10,0,0 "SPT20" "member of the TBP class of SPT proteins that alter transcription site selection" ytyil136w - 40,16,0,0 "OM45" "protein of the outer mitochondrial membrane" ytydr513w 1,3,7,0 "TTR1" "glutaredoxin" 11,1,0,0 "TTR1" "glutaredoxin" 11,7,0,0 "TTR1" "glutaredoxin" 40,3,0,0 "TTR1" "glutaredoxin" ytyor340c - 4,1,1,0 "RPA43" "DNA-directed RNA polymerase I, 36 KD subunit" 40,10,0,0 "RPA43" "DNA-directed RNA polymerase I, 36 KD subunit" ytyol077w-a - 2,13,0,0 "ATP19" "subunit K of the dimeric form of mitochondrial F1F0-ATP synthase" 40,16,0,0 "ATP19" "subunit K of the dimeric form of mitochondrial F1F0-ATP synthase" 8,4,0,0 "ATP19" "subunit K of the dimeric form of mitochondrial F1F0-ATP synthase" ytybr265w 1,6,1,0 "TSC10" "3-ketosphinganine reductase" 40,7,0,0 "TSC10" "3-ketosphinganine reductase" ytyhr103w - 14,4,3,1 "SBE22" "golgi protein involved in yeast cell wall formation" ytydr516c 1,5,1,0 "null" "strong similarity to glucokinase" ytydr371w 1,5,1,0 "null" "similarity to chitinases" ytyil075c - 4,3,3,0 "RPN2" "26S proteasome regulatory subunit" 40,10,0,0 "RPN2" "26S proteasome regulatory subunit" 40,7,0,0 "RPN2" "26S proteasome regulatory subunit" 6,13,1,0 "RPN2" "26S proteasome regulatory subunit" ytyjr035w - 3,1,5,0 "RAD26" "DNA repair and recombination protein" 40,10,0,0 "RAD26" "DNA repair and recombination protein" ytynl036w - 8,16,0,0 "NCE103" "involved in non-classical protein export pathway" ytygr245c - 3,3,1,0 "SDA1" "required for normal organization of the actin cytoskeleton; required for passage through Start" 40,4,0,0 "SDA1" "required for normal organization of the actin cytoskeleton; required for passage through Start" ytyil076w - 40,9,0,0 "SEC28" "epsilon-COP coatomer subunit" 6,4,0,0 "SEC28" "epsilon-COP coatomer subunit" 8,7,0,0 "SEC28" "epsilon-COP coatomer subunit" ytylr299w 1,1,4,0 "ECM38" "gamma-glutamyltransferase, involved in glutathione synthesis" 3,3,1,0 "ECM38" "gamma-glutamyltransferase, involved in glutathione synthesis" 30,1,0,0 "ECM38" "gamma-glutamyltransferase, involved in glutathione synthesis" ytydr519w - 11,1,0,0 "FKB2" "FK506/rapamycin-binding protein of the ER" 40,7,0,0 "FKB2" "FK506/rapamycin-binding protein of the ER" 6,1,0,0 "FKB2" "FK506/rapamycin-binding protein of the ER" ytyhr108w - 8,7,0,0 "GGA2" "Arf-binding protein" ytynl131w - 40,16,0,0 "TOM22" "mitochondrial outer membrane import receptor complex subunit" 6,4,0,0 "TOM22" "mitochondrial outer membrane import receptor complex subunit" 67,99,0,0 "TOM22" "mitochondrial outer membrane import receptor complex subunit" 8,4,0,0 "TOM22" "mitochondrial outer membrane import receptor complex subunit" ytydr294c 1,6,1,0 "DPL1" "dihydrosphingosine phosphate lyase" ytyjl034w - 3,3,1,0 "KAR2" "nuclear fusion protein" 40,7,0,0 "KAR2" "nuclear fusion protein" 6,1,0,0 "KAR2" "nuclear fusion protein" 6,4,0,0 "KAR2" "nuclear fusion protein" 67,99,0,0 "KAR2" "nuclear fusion protein" 8,99,0,0 "KAR2" "nuclear fusion protein" ytylr300w 1,5,1,0 "EXG1" "exo-beta-1,3-glucanase (I/II), major isoform" 14,1,0,0 "EXG1" "exo-beta-1,3-glucanase (I/II), major isoform" 14,4,3,3 "EXG1" "exo-beta-1,3-glucanase (I/II), major isoform" 14,4,3,5 "EXG1" "exo-beta-1,3-glucanase (I/II), major isoform" 40,27,0,0 "EXG1" "exo-beta-1,3-glucanase (I/II), major isoform" ytypl126w - 3,3,1,0 "NAN1" "weak similarity to fruit fly TFIID subunit p85" 40,10,3,0 "NAN1" "weak similarity to fruit fly TFIID subunit p85" ytyhr109w - 6,7,99,0 "CTM1" "cytochrome c methyltransferase" ytyjl116c - 14,10,0,0 "NCA3" "involved in regulation of synthesis of ATP6P and Atp8p" ytyhl027w - 3,3,2,0 "RIM101" "meiotic regulatory protein" 4,5,1,4 "RIM101" "meiotic regulatory protein" 40,10,0,0 "RIM101" "meiotic regulatory protein" ytydl025c - 11,1,0,0 "null" "similarity to probable protein kinase NPR1" ytyml096w 1,1,1,0 "null" "similarity to asparagine synthases" ytydr122w - 40,2,0,0 "KIN1" "ser/thr protein kinase" ytybr034c - 40,10,0,0 "HMT1" "hnRNP arginine N-methyltransferase" 6,7,0,0 "HMT1" "hnRNP arginine N-methyltransferase" ytynl214w - 40,19,0,0 "PEX17" "component of the peroxisomal protein translocation - peroxin" 8,10,0,0 "PEX17" "component of the peroxisomal protein translocation - peroxin" ytygr183c - 2,13,0,0 "QCR9" "ubiquinol--cytochrome-c reductase subunit 9" 40,16,0,0 "QCR9" "ubiquinol--cytochrome-c reductase subunit 9" ytypr066w - 6,7,0,0 "UBA3" "ubiquitin-like protein activating enzyme" ytyfr038w - 3,1,5,1 "null" "strong similarity to mouse lymphocyte specific helicase" ytydr538w - 11,7,0,0 "PAD1" "phenylacrylic acid decarboxylase" ytymr008c 1,6,4,0 "PLB1" "phospholipase B (lysophospholipase)" 40,2,0,0 "PLB1" "phospholipase B (lysophospholipase)" ytydl108w - 3,1,5,1 "KIN28" "cyclin-dependent ser/thr protein kinase" 3,3,1,0 "KIN28" "cyclin-dependent ser/thr protein kinase" 4,5,1,1 "KIN28" "cyclin-dependent ser/thr protein kinase" 40,10,0,0 "KIN28" "cyclin-dependent ser/thr protein kinase" ytynl217w - 5,1,0,0 "null" "weak similarity to E.coli bis(5'-nucleosyl)-tetraphosphatase" ytyhr063c 1,7,1,0 "PAN5" "weak similarity to translational activator CBS2" ytylr240w 1,6,1,0 "VPS34" "phosphatidylinositol 3-kinase" 10,1,99,0 "VPS34" "phosphatidylinositol 3-kinase" 40,3,0,0 "VPS34" "phosphatidylinositol 3-kinase" 40,8,0,0 "VPS34" "phosphatidylinositol 3-kinase" 40,9,0,0 "VPS34" "phosphatidylinositol 3-kinase" 8,19,0,0 "VPS34" "phosphatidylinositol 3-kinase" ytylr066w - 40,7,0,0 "SPC3" "signal peptidase subunit" 6,7,0,0 "SPC3" "signal peptidase subunit" ytypl227c 1,5,1,0 "ALG5" "dolichol-P-glucose synthetase" 40,7,0,0 "ALG5" "dolichol-P-glucose synthetase" 6,7,0,0 "ALG5" "dolichol-P-glucose synthetase" ytydr060w - 30,99,0,0 "MAK21" "protein required for 60S ribosomal subunit biogenesis" 5,99,0,0 "MAK21" "protein required for 60S ribosomal subunit biogenesis" ytyjl070c 1,3,1,0 "null" "similarity to AMP deaminases" ytybr133c - 3,3,1,0 "HSL7" "adapter in a regulatory pathway that relieves tyrosine phosphorylation of CDC28" 40,4,0,0 "HSL7" "adapter in a regulatory pathway that relieves tyrosine phosphorylation of CDC28" ytydr047w 1,7,1,0 "HEM12" "uroporphyrinogen decarboxylase" 40,3,0,0 "HEM12" "uroporphyrinogen decarboxylase" ytyjr153w 1,5,1,0 "PGU1" "Endo-polygalacturonase" ytynl154c - 11,1,0,0 "YCK2" "casein kinase I isoform" 14,1,0,0 "YCK2" "casein kinase I isoform" 14,4,3,1 "YCK2" "casein kinase I isoform" 3,3,3,0 "YCK2" "casein kinase I isoform" 40,2,0,0 "YCK2" "casein kinase I isoform" 8,19,0,0 "YCK2" "casein kinase I isoform" ytyer005w - 6,7,0,0 "YND1" "Yeast Nucleoside Diphosphatase" ytyjl071w 1,1,1,0 "ARG2" "acetylglutamate synthase" ytyil101c - 4,5,1,4 "XBP1" "stress-induced transcriptional repressor" ytyor130c 1,1,7,0 "ORT1" "ornithine transport protein of mitochondria involved in arginine metabolism, member of the mitochondrial carrier family (MCF)" 40,16,0,0 "ORT1" "ornithine transport protein of mitochondria involved in arginine metabolism, member of the mitochondrial carrier family (MCF)" 67,10,0,0 "ORT1" "ornithine transport protein of mitochondria involved in arginine metabolism, member of the mitochondrial carrier family (MCF)" 8,4,0,0 "ORT1" "ornithine transport protein of mitochondria involved in arginine metabolism, member of the mitochondrial carrier family (MCF)" ytyjl218w 1,5,1,0 "null" "strong similarity to E.coli galactoside O-acetyltransferase" ytydr144c - 40,2,0,0 "MKC7" "aspartyl protease of the periplasmic space" 6,13,99,0 "MKC7" "aspartyl protease of the periplasmic space" ytybr150c - 4,99,0,0 "TBS1" "weak similarity to transcription factors" 40,10,0,0 "TBS1" "weak similarity to transcription factors" ytyhr082c - 40,10,0,0 "KSP1" "ser/thr protein kinase" ytyjl073w - 40,7,0,0 "JEM1" "similarity to heat shock proteins" 6,1,0,0 "JEM1" "similarity to heat shock proteins" ytymr202w 1,6,1,0 "ERG2" "C-8 sterol isomerase" 40,7,0,0 "ERG2" "C-8 sterol isomerase" ytyor038c - 4,5,1,4 "HIR2" "histone transcription regulator" 40,10,0,0 "HIR2" "histone transcription regulator" ytybr217w - 30,25,0,0 "APG12" "component of the autophagic system" 40,25,0,0 "APG12" "component of the autophagic system" 6,13,4,0 "APG12" "component of the autophagic system" ytynl238w - 14,4,3,3 "KEX2" "endoproteinase of late golgi compartment" 40,8,0,0 "KEX2" "endoproteinase of late golgi compartment" 6,7,0,0 "KEX2" "endoproteinase of late golgi compartment" ytydr495c - 40,25,0,0 "VPS3" "vacuolar sorting protein" 6,10,0,0 "VPS3" "vacuolar sorting protein" 6,4,0,0 "VPS3" "vacuolar sorting protein" 6,7,0,0 "VPS3" "vacuolar sorting protein" ytypr011c 1,3,19,0 "null" "similarity to ADP/ATP carrier proteins and Graves disease carrier protein" 67,16,0,0 "null" "similarity to ADP/ATP carrier proteins and Graves disease carrier protein" 8,4,0,0 "null" "similarity to ADP/ATP carrier proteins and Graves disease carrier protein" ytyor054c - 11,1,0,0 "null" "similarity to SIS2P protein and C.tropicalis hal3 protein" ytyjr159w 1,5,1,0 "SOR1" "sorbitol dehydrogenase" ytypl089c - 14,1,3,99 "RLM1" "transcription factor of the MADS box family" 4,5,1,4 "RLM1" "transcription factor of the MADS box family" 40,10,0,0 "RLM1" "transcription factor of the MADS box family" ytydl080c 1,1,10,0 "THI3" "positive regulation factor of thiamin metabolism" 1,7,7,0 "THI3" "positive regulation factor of thiamin metabolism" 4,5,1,4 "THI3" "positive regulation factor of thiamin metabolism" ytygl032c - 14,4,3,3 "AGA2" "a-agglutinin binding subunit" 40,1,0,0 "AGA2" "a-agglutinin binding subunit" 40,27,0,0 "AGA2" "a-agglutinin binding subunit" ytyer120w 1,5,4,0 "SCS2" "required for inositol metabolism" 4,5,1,4 "SCS2" "required for inositol metabolism" 40,7,0,0 "SCS2" "required for inositol metabolism" ytydl066w 1,5,1,0 "IDP1" "isocitrate dehydrogenase (NADP+), mitochondrial" 2,10,0,0 "IDP1" "isocitrate dehydrogenase (NADP+), mitochondrial" 40,16,0,0 "IDP1" "isocitrate dehydrogenase (NADP+), mitochondrial" ytynl003c - 67,99,0,0 "PET8" "member of the mitochondrial carrier (MCF) family" 8,4,0,0 "PET8" "member of the mitochondrial carrier (MCF) family" ytyjl174w 1,5,1,0 "KRE9" "cell wall synthesis protein" 14,1,0,0 "KRE9" "cell wall synthesis protein" 14,4,3,1 "KRE9" "cell wall synthesis protein" 14,4,3,3 "KRE9" "cell wall synthesis protein" 40,27,0,0 "KRE9" "cell wall synthesis protein" ytybr092c 1,4,1,0 "PHO3" "constitutive acid phosphatase precursor" 1,7,4,0 "PHO3" "constitutive acid phosphatase precursor" 40,27,0,0 "PHO3" "constitutive acid phosphatase precursor" ytylr347c - 40,3,0,0 "KAP95" "karyopherin-beta" 6,4,0,0 "KAP95" "karyopherin-beta" 8,1,0,0 "KAP95" "karyopherin-beta" ytykl213c 1,6,4,0 "DOA1" "involved in ubiquitin-dependent proteolysis" 6,13,1,0 "DOA1" "involved in ubiquitin-dependent proteolysis" ytydr407c - 40,8,0,0 "TRS120" "TRAPP subunit of 120 kDa involved in targeting and fusion of ER to golgi transport vesicles" 8,7,0,0 "TRS120" "TRAPP subunit of 120 kDa involved in targeting and fusion of ER to golgi transport vesicles" ytycl018w 1,1,1,0 "LEU2" "beta-isopropyl-malate dehydrogenase" 40,3,0,0 "LEU2" "beta-isopropyl-malate dehydrogenase" ytypl187w - 14,4,3,3 "MFALPHA1" "mating pheromone alpha-1 precursor" 40,27,0,0 "MFALPHA1" "mating pheromone alpha-1 precursor" ytylr442c - 14,4,3,3 "SIR3" "silencing regulatory and DNA-repair protein" 3,1,5,1 "SIR3" "silencing regulatory and DNA-repair protein" 4,5,1,4 "SIR3" "silencing regulatory and DNA-repair protein" 40,10,0,0 "SIR3" "silencing regulatory and DNA-repair protein" ytynr008w 1,6,1,0 "LRO1" "a lecithin cholesterol acyltransferase-like gene, mediates diacylglycerol esterification" ytymr080c 1,3,16,0 "NAM7" "nonsense-mediated mRNA decay protein" 40,3,0,0 "NAM7" "nonsense-mediated mRNA decay protein" 5,7,0,0 "NAM7" "nonsense-mediated mRNA decay protein" ytyml064c - 10,1,99,0 "TEM1" "GTP-binding protein of the RAS superfamily" 3,3,1,0 "TEM1" "GTP-binding protein of the RAS superfamily" ytymr161w - 6,1,0,0 "HLJ1" "similarity to dnaJ proteins" ytyfr005c - 4,5,5,1 "SAD1" "SnRNP assembly defective" ytyol059w 1,5,1,0 "GPD2" "glycerol-3-phosphate dehydrogenase (NAD+), mitochondrial" 40,16,0,0 "GPD2" "glycerol-3-phosphate dehydrogenase (NAD+), mitochondrial" ytygl133w - 4,5,1,4 "ITC1" "subunit of ISW2 chromatin remodelling complex" 40,10,3,0 "ITC1" "subunit of ISW2 chromatin remodelling complex" ytypr034w - 40,4,0,0 "ARP7" "component of SWI-SNF global transcription activator complex and RSC chromatin remodeling complex" ytyjl006c - 4,5,1,4 "CTK2" "carboxy-terminal domain (CTD) kinase, beta subunit" 40,10,0,0 "CTK2" "carboxy-terminal domain (CTD) kinase, beta subunit" ytydr265w - 40,19,0,0 "PEX10" "peroxisomal assembly protein - peroxin" 6,10,0,0 "PEX10" "peroxisomal assembly protein - peroxin" ytylr286c 1,5,1,0 "CTS1" "endochitinase" 3,3,3,0 "CTS1" "endochitinase" 40,27,0,0 "CTS1" "endochitinase" ytyfr006w - 6,13,99,0 "null" "similarity to X-Pro dipeptidases" ytycl052c - 40,7,0,0 "PBN1" "required for post-translational processing of the protease B precursor PRB1P" 6,7,0,0 "PBN1" "required for post-translational processing of the protease B precursor PRB1P" ytyer129w - 4,99,0,0 "PAK1" "DNA polymerase alpha suppressing protein kinase" ytydr441c 1,3,1,0 "APT2" "adenine phosphoribosyltransferase" ytygl070c - 4,5,1,1 "RPB9" "DNA-directed RNA polymerase II, 14.2 KD subunit" 40,10,0,0 "RPB9" "DNA-directed RNA polymerase II, 14.2 KD subunit" ytyfl004w 1,4,0,0 "VTC2" "putative polyphosphate synthetase" ytygl056c - 3,3,1,0 "SDS23" "strong similarity to pombe SDS23" 3,3,3,0 "SDS23" "strong similarity to pombe SDS23" ytypr037c - 40,16,0,0 "ERV2" "similarity to ERV1P and rat ALR protein" ytyil146c - 30,1,0,0 "ECM37" "involved in cell wall biogenesis and architecture" ytynr043w 1,6,1,0 "MVD1" "mevalonate pyrophosphate decarboxylase" ytyfl021w 1,2,4,0 "GAT1" "transcription factor for nitrogen regulation" 4,5,1,4 "GAT1" "transcription factor for nitrogen regulation" 40,10,0,0 "GAT1" "transcription factor for nitrogen regulation" ytydr110w - 3,1,3,0 "FOB1" "DNA replication fork blocking protein" 3,1,5,0 "FOB1" "DNA replication fork blocking protein" 40,3,0,0 "FOB1" "DNA replication fork blocking protein" ytyor003w - 6,13,4,0 "YSP3" "subtilisin-like protease III" ytyml086c 1,5,1,0 "ALO1" "D-arabinono-1,4-lactone oxidase" 11,1,0,0 "ALO1" "D-arabinono-1,4-lactone oxidase" ytyjl106w - 14,4,3,5 "IME2" "ser/thr protein kinase" 3,3,1,0 "IME2" "ser/thr protein kinase" 3,3,2,0 "IME2" "ser/thr protein kinase" ytynl204c - 14,4,3,5 "SPS18" "sporulation-specific zinc-finger protein" 3,3,2,0 "SPS18" "sporulation-specific zinc-finger protein" 4,5,1,4 "SPS18" "sporulation-specific zinc-finger protein" 40,10,0,0 "SPS18" "sporulation-specific zinc-finger protein" ytypl132w 1,7,1,0 "COX11" "cytochrome-c oxidase assembly protein" 30,1,0,0 "COX11" "cytochrome-c oxidase assembly protein" 40,16,0,0 "COX11" "cytochrome-c oxidase assembly protein" 6,10,0,0 "COX11" "cytochrome-c oxidase assembly protein" ytybr103w - 11,1,0,0 "SIF2" "SIR4P interacting protein" 4,5,1,4 "SIF2" "SIR4P interacting protein" 40,10,0,0 "SIF2" "SIR4P interacting protein" ytydr541c 1,7,99,0 "null" "similarity to dihydroflavonol-4-reductases" ytygl155w 1,6,7,0 "CDC43" "geranylgeranyltransferase beta subunit" 14,4,3,1 "CDC43" "geranylgeranyltransferase beta subunit" 3,3,1,0 "CDC43" "geranylgeranyltransferase beta subunit" 40,3,0,0 "CDC43" "geranylgeranyltransferase beta subunit" 6,7,0,0 "CDC43" "geranylgeranyltransferase beta subunit" ytygl252c 1,5,4,0 "RTG2" "retrograde regulation protein" 40,3,0,0 "RTG2" "retrograde regulation protein" ytybr200w - 14,1,3,99 "BEM1" "bud emergence mediator" 14,4,3,1 "BEM1" "bud emergence mediator" 14,4,3,3 "BEM1" "bud emergence mediator" 3,3,1,0 "BEM1" "bud emergence mediator" 40,4,0,0 "BEM1" "bud emergence mediator" ytyor008c - 11,1,0,0 "SLG1" "required for cell wall integrity and for stress response" 40,2,0,0 "SLG1" "required for cell wall integrity and for stress response" ytybl105c - 11,1,0,0 "PKC1" "ser/thr protein kinase" 14,1,3,0 "PKC1" "ser/thr protein kinase" 14,4,3,1 "PKC1" "ser/thr protein kinase" 3,3,1,0 "PKC1" "ser/thr protein kinase" 40,3,0,0 "PKC1" "ser/thr protein kinase" ytynl128w - 10,1,99,0 "TEP1" "weak similarity to tensin and to the mammalian tumor suppressor gene product MMAC1/PTEN/TEP1" ytyjr049c - 13,1,1,1 "UTR1" "associated with ferric reductase activity" ytypr075c - 14,4,3,3 "OPY2" "pheromone resistant yeast 2" ytyhr135c - 11,1,0,0 "YCK1" "casein kinase I isoform" 14,1,0,0 "YCK1" "casein kinase I isoform" 14,4,3,1 "YCK1" "casein kinase I isoform" 3,3,3,0 "YCK1" "casein kinase I isoform" 40,2,0,0 "YCK1" "casein kinase I isoform" 8,7,0,0 "YCK1" "casein kinase I isoform" ytylr058c 1,3,1,0 "SHM2" "serine hydroxymethyltransferase, cytoplasmic" 1,6,1,0 "SHM2" "serine hydroxymethyltransferase, cytoplasmic" 40,3,0,0 "SHM2" "serine hydroxymethyltransferase, cytoplasmic" ytydr212w - 40,3,0,0 "TCP1" "component of chaperonin-containing T-complex" 6,1,0,0 "TCP1" "component of chaperonin-containing T-complex" ytybr204c 1,6,4,0 "null" "weak similarity to peroxisomal serine-active lipase" 40,19,0,0 "null" "weak similarity to peroxisomal serine-active lipase" ytyol009c - 40,16,0,0 "MDM12" "involved in mitochondrial inheritance" ytybr205w 1,5,1,0 "KTR3" "alpha-1,2-mannosyltransferase" 6,7,0,0 "KTR3" "alpha-1,2-mannosyltransferase" ytyfl060c - 11,1,0,0 "SNO3" "strong similarity to SNO1 and SNO2" ytyor201c - 4,1,4,0 "PET56" "rRNA (guanosine-2'-O-)-methyltransferase" 40,16,0,0 "PET56" "rRNA (guanosine-2'-O-)-methyltransferase" ytydr483w 1,5,1,0 "KRE2" "alpha-1,2-mannosyltransferase" 30,1,0,0 "KRE2" "alpha-1,2-mannosyltransferase" 40,8,0,0 "KRE2" "alpha-1,2-mannosyltransferase" 6,7,0,0 "KRE2" "alpha-1,2-mannosyltransferase" ytydr055w - 14,4,3,5 "PST1" "strong similarity to SPS2 protein" 3,3,2,0 "PST1" "strong similarity to SPS2 protein" ytygr195w 1,3,16,0 "SKI6" "3'->5' exoribonuclease required for 3' end formation of 5.8S rRNA" 30,1,0,0 "SKI6" "3'->5' exoribonuclease required for 3' end formation of 5.8S rRNA" 4,1,4,0 "SKI6" "3'->5' exoribonuclease required for 3' end formation of 5.8S rRNA" ytygl178w - 11,1,0,0 "MPT5" "multicopy suppressor of POP2" 13,11,3,7 "MPT5" "multicopy suppressor of POP2" 14,20,0,0 "MPT5" "multicopy suppressor of POP2" 14,4,3,3 "MPT5" "multicopy suppressor of POP2" 3,3,1,0 "MPT5" "multicopy suppressor of POP2" ytymr033w - 40,4,0,0 "ARP9" "Actin-related protein" ytypl091w - 11,1,0,0 "GLR1" "glutathione reductase (NADPH)" 11,7,0,0 "GLR1" "glutathione reductase (NADPH)" ytydr057w - 40,7,0,0 "null" "weak similarity to L.lactis mleR protein" ytygr023w - 14,4,3,3 "MTL1" "potential cell wall stres sensor" 3,3,1,0 "MTL1" "potential cell wall stres sensor" ytyir033w - 3,1,9,5 "MGA2" "may be involved in the remodeling chromatin structure" 40,10,0,0 "MGA2" "may be involved in the remodeling chromatin structure" ytyor299w 1,5,1,0 "BUD7" "involved in bud-site selection" ytyhr076w - 2,99,0,0 "null" "weak similarity to C.elegans hypothetical protein CEW09D10" 40,16,0,0 "null" "weak similarity to C.elegans hypothetical protein CEW09D10" ytydr488c - 3,3,1,0 "PAC11" "required in the absence of CIN8P" 40,4,0,0 "PAC11" "required in the absence of CIN8P" 8,22,0,0 "PAC11" "required in the absence of CIN8P" ytygl009c 1,1,1,0 "LEU1" "3-isopropylmalate dehydratase" 40,3,0,0 "LEU1" "3-isopropylmalate dehydratase" ytyor206w - 30,99,0,0 "NOC2" "crucial for intranuclear movement of ribosomal precursor particles" 8,1,0,0 "NOC2" "crucial for intranuclear movement of ribosomal precursor particles" ytq0065 - 4,5,5,1 "AI4" "DNA endonuclease" 40,16,0,0 "AI4" "DNA endonuclease" ytykl106w 1,1,1,0 "AAT1" "aspartate transaminase, mitochondrial" 40,16,0,0 "AAT1" "aspartate transaminase, mitochondrial" ytyor207c - 4,1,1,0 "RET1" "DNA-directed RNA polymerase III, 130 KD subunit" 4,3,1,0 "RET1" "DNA-directed RNA polymerase III, 130 KD subunit" 40,10,0,0 "RET1" "DNA-directed RNA polymerase III, 130 KD subunit" ytygr201c - 5,4,0,0 "null" "strong similarity to translation elongation factor eEF1 alpha chain CAM1P" ytyor061w - 3,3,1,0 "CKA2" "casein kinase II alpha' chain" 4,3,99,0 "CKA2" "casein kinase II alpha' chain" 40,10,0,0 "CKA2" "casein kinase II alpha' chain" ytydl232w 1,5,1,0 "OST4" "oligosaccharyltransferase subunit" 40,7,0,0 "OST4" "oligosaccharyltransferase subunit" 6,7,0,0 "OST4" "oligosaccharyltransferase subunit" ytymr053c - 4,5,1,4 "STB2" "SIN3P binding protein" ytynl261w - 14,4,3,3 "ORC5" "origin recognition complex, 50 kDa subunit" 3,1,3,0 "ORC5" "origin recognition complex, 50 kDa subunit" 4,5,1,4 "ORC5" "origin recognition complex, 50 kDa subunit" 40,10,0,0 "ORC5" "origin recognition complex, 50 kDa subunit" ytyir036c 1,5,1,0 "null" "similarity to E.coli fabD" ytynl328c - 11,1,0,0 "MDJ2" "heat shock protein - chaperone" 40,16,0,0 "MDJ2" "heat shock protein - chaperone" 6,1,0,0 "MDJ2" "heat shock protein - chaperone" ytykl028w - 4,5,1,1 "TFA1" "TFIIE subunit (transcription initiation factor), 66 kD" 40,10,0,0 "TFA1" "TFIIE subunit (transcription initiation factor), 66 kD" ytygr108w - 3,3,1,0 "CLB1" "cyclin, G2/M-specific" ytygl120c - 4,5,5,1 "PRP43" "involved in spliceosome disassembly" 40,10,0,0 "PRP43" "involved in spliceosome disassembly" ytymr055c - 3,3,1,3 "BUB2" "cell cycle arrest protein" ytylr418c - 4,5,1,4 "CDC73" "DNA-directed RNA polymerase II accessory protein" 40,10,0,0 "CDC73" "DNA-directed RNA polymerase II accessory protein" ytynl264c 1,6,1,1 "PDR17" "involved in regulating phosphatidylserine metabolism" 1,6,99,0 "PDR17" "involved in regulating phosphatidylserine metabolism" ytygl027c 1,5,1,0 "CWH41" "ER glucosidase I" 30,1,0,0 "CWH41" "ER glucosidase I" 40,7,0,0 "CWH41" "ER glucosidase I" ytyjl087c - 4,3,3,0 "TRL1" "tRNA ligase" 40,10,0,0 "TRL1" "tRNA ligase" ytygr124w 1,1,1,0 "ASN2" "asparagine synthetase" ytyil131c - 4,5,1,4 "FKH1" "forkhead protein, involved in transcriptional silencing, cell morphology and cell cycle" 40,10,0,0 "FKH1" "forkhead protein, involved in transcriptional silencing, cell morphology and cell cycle" Propertest Accuracy: 65/183 (35.52%) Propertest Frequency class '1/0/0/0': 382/1342 (28.46%) New (unknown) data (884 items): ytyil117c - 99,0,0,0 "PRM5" "similarity to hypothetical protein YNL058c" ytyal042c-a - 99,0,0,0 "KRE23" "questionable ORF" ytyor240w - 99,0,0,0 "null" "similarity to C.elegans ZK1058.5 protein" ytydl237w - 99,0,0,0 "null" "weak similarity to hypothetical protein, Streptomyces coelicolor" ytymr313c - 99,0,0,0 "null" "similarity to YKR089c and YOR081c" ytyor147w - 99,0,0,0 "null" "similarity to YHR194w" ytypr105c - 99,0,0,0 "COD1" "similarity to hypothetical protein SPCC338.13 S. pombe" ytygr141w - 99,0,0,0 "null" "strong similarity to hypothetical protein YPR157w" ytykr065c - 99,0,0,0 "null" "similarity to hypothetical protein S. pombe" ytyml031c-a - 99,0,0,0 "null" "questionable ORF" ytymr075c-a - 99,0,0,0 "null" "questionable ORF" ytymr315w - 99,0,0,0 "null" "similarity to hypothetical S. pombe protein" ytyor084w - 99,0,0,0 "null" "hypothetical protein" ytydl001w - 99,0,0,0 "null" "similarity to hypothetical protein YFR048w, YDR282c and S.pombe hypothetical protein SPAC12G12.14" ytypr042c - 98,0,0,0 "PUF2" "similarity to JSN1P" ytyor245c - 99,0,0,0 "DGA1" "similarity to hypothetical C. elegans proteins" ytypr202w - 99,0,0,0 "null" "strong similarity to subtelomeric encoded proteins" ytymr157c - 99,0,0,0 "null" "hypothetical protein" ytydl176w - 99,0,0,0 "null" "hypothetical protein" ytydl177c - 99,0,0,0 "null" "similarity to hypothetical protein YCR059c" ytyhr009c - 99,0,0,0 "null" "similarity to S.pombe hypothetical protein" ytyil058w - 99,0,0,0 "null" "hypothetical protein" ytyor087w - 99,0,0,0 "null" "hypothetical protein" ytyil059c - 99,0,0,0 "null" "hypothetical protein" ytyer059w - 98,0,0,0 "PCL6" "cyclin like protein interacting with PHO85P" ytygr242w - 99,0,0,0 "null" "questionable ORF" ytylr123c - 99,0,0,0 "null" "questionable ORF" ytyol166c - 99,0,0,0 "null" "hypothetical protein" ytylr297w - 99,0,0,0 "null" "weak similarity to Vibrio vulnificus VvpC protein" ytyor183w - 99,0,0,0 "FYV12" "hypothetical protein" ytybl012c - 99,0,0,0 "null" "questionable ORF" ytyor345c - 99,0,0,0 "null" "questionable ORF" ytyjl019w - 99,0,0,0 "null" "weak similarity to hypothetical protein C. elegans" ytyhr202w - 99,0,0,0 "null" "similarity to S.pombe hypothetical protein SPAC17G6" ytyil157c - 99,0,0,0 "null" "weak similarity to PIR:T39578 hypothetical protein SPBC16E9.03c S. pombe" ytydr199w - 99,0,0,0 "null" "questionable ORF" ytycr068w - 99,0,0,0 "CVT17" "similarity to starvation induced pSI-7 protein of C. fluvum" ytyor186w - 99,0,0,0 "null" "hypothetical protein" ytymr098c - 99,0,0,0 "null" "hypothetical protein" ytyfl032w - 99,0,0,0 "null" "questionable ORF" ytyil158w - 99,0,0,0 "null" "similarity to hypothetical protein YKR100c" ytygl165c - 99,0,0,0 "null" "questionable ORF" ytyor282w - 99,0,0,0 "null" "questionable ORF" ytyhr214w-a - 99,0,0,0 "null" "strong similarity to hypothetical protein YAR068w" ytyhr045w - 99,0,0,0 "null" "hypothetical protein" ytypr146c - 99,0,0,0 "null" "questionable ORF" ytyel077c - 99,0,0,0 "null" "strong similarity to subtelomeric encoded proteins" ytypr147c - 99,0,0,0 "null" "weak similarity to CG9186 D. melanogaster" ytygl261c - 99,0,0,0 "null" "strong similarity to members of the SRP1/TIP1 family" ytygr010w - 99,0,0,0 "null" "strong similarity to hypothetical protein YLR328w" ytyfr054c - 99,0,0,0 "null" "hypothetical protein" ytygl262w - 99,0,0,0 "null" "similarity to hypothetical protein YER187w" ytyor380w - 99,0,0,0 "null" "weak similarity to PDR3P" ytyml101c - 99,0,0,0 "null" "weak similarity to YMR264w" ytylr227c - 99,0,0,0 "ADY4" "hypothetical protein" ytydr034w-b - 99,0,0,0 "null" "questionable ORF - identified by SAGE" ytydr221w - 99,0,0,0 "null" "weak similarity to the beta subunit of an ER luminal alpha-glucosidase from mouse" ytyjl150w - 99,0,0,0 "null" "questionable ORF" ytylr162w - 99,0,0,0 "null" "hypothetical protein" ytyjl057c - 99,0,0,0 "IKS1" "weak similarity to human P1/eIF-2a protein kinase" ytydr491c - 99,0,0,0 "null" "questionable ORF" ytyhr080c - 99,0,0,0 "null" "similarity to hypothetical protein YDR326c, YFL042c and YLR072w" ytynl235c - 99,0,0,0 "null" "questionable ORF" ytyjl058c - 99,0,0,0 "null" "strong similarity to hypothetical protein YBR270c" ytyor050c - 99,0,0,0 "null" "hypothetical protein" ytybr230c - 99,0,0,0 "null" "hypothetical protein" ytyol035c - 99,0,0,0 "null" "questionable ORF" ytyhr149c - 99,0,0,0 "null" "similarity to hypothetical protein YGR221c" ytypl261c - 99,0,0,0 "null" "questionable ORF" ytyor118w - 99,0,0,0 "null" "similarity to PIR:T39884 hypothetical protein SPBC21.02 S. pombe" ytyor387c - 99,0,0,0 "null" "strong similarity to YGL258w" ytymr298w - 99,0,0,0 "null" "hypothetical protein" ytymr193c-a - 99,0,0,0 "null" "questionable ORF" ytyel007w - 98,0,0,0 "TOS9" "similarity to S.pombe PAC2 protein" ytyor053w - 99,0,0,0 "null" "similarity to protamines" ytydr161w - 99,0,0,0 "TCI1" "weak similarity to S. pombe protein of unknown function SPBC16D10.01c" ytydr496c - 99,0,0,0 "PUF6" "similarity to hypothetical human and C.elegans proteins" ytyjr079w - 99,0,0,0 "null" "questionable ORF" ytylr328w - 99,0,0,0 "null" "strong similarity to YGR010w" ytygr115c - 99,0,0,0 "null" "questionable ORF" ytypr012w - 99,0,0,0 "null" "hypothetical protein" ytyhr180w - 99,0,0,0 "null" "hypothetical protein" ytygr210c - 99,0,0,0 "null" "similarity to M.jannaschii GTP-binding protein and to M.capricolum hypothetical protein SGC3" ytygr050c - 99,0,0,0 "null" "questionable ORF" ytynl176c - 99,0,0,0 "null" "weak similarity to HKR1P" ytydl241w - 99,0,0,0 "null" "hypothetical protein" ytygl034c - 99,0,0,0 "null" "questionable ORF" ytylr425w - 99,0,0,0 "TUS1" "similarity to GDP-GTP exchange factors" ytydr165w - 99,0,0,0 "null" "weak similarity to hypothetical C.elegans protein" ytybr077c - 99,0,0,0 "null" "hypothetical protein" ytyor218c - 99,0,0,0 "null" "questionable ORF" ytydr326c - 99,0,0,0 "null" "strong similarity to YHR080c, similarity to YFL042c and YLR072w" ytyel075w-a - 99,0,0,0 "null" "questionable ORF" ytylr361c - 99,0,0,0 "null" "similarity to YOR3329c" ytq0182 - 99,0,0,0 "null" "questionable ORF" ytynr021w - 99,0,0,0 "null" "weak similarity to hypothetical protein S. pombe" ytyor059c - 99,0,0,0 "null" "weak similarity to YGL144c" ytydr327w - 99,0,0,0 "null" "questionable ORF" ytylr428c - 99,0,0,0 "null" "questionable ORF" ytyor314w - 99,0,0,0 "null" "hypothetical protein" ytydr262w - 99,0,0,0 "null" "hypothetical protein" ytymr160w - 99,0,0,0 "null" "weak similarity to fruit fly ecdysone-inducible protein" ytyol138c - 99,0,0,0 "null" "weak similarity to hypothetical trp-asp repeats containing protein S. pombe" ytyel043w - 99,0,0,0 "null" "weak similarity to MAD1P" ytynl276c - 99,0,0,0 "null" "questionable ORF" ytymr322c - 99,0,0,0 "null" "strong similarity to YPL280w, YOR391c and YDR533c" ytybr270c - 99,0,0,0 "null" "strong similarity to hypothetical protein YJL058c" ytylr365w - 99,0,0,0 "null" "weak similarity to Udf2p" ytybl094c - 99,0,0,0 "null" "questionable ORF" ytydr520c - 99,0,0,0 "null" "weak similarity to transcription factors of the zinc finger class" ytyal028w - 99,0,0,0 "null" "similarity to hypothetical protein YOR324c" ytydl183c - 99,0,0,0 "null" "weak similarity to S.pombe hypothetical protein SPAC23H3" ytyfr020w - 99,0,0,0 "null" "hypothetical protein" ytybr271w - 99,0,0,0 "null" "weak similarity to S.pombe uvi22 protein and hypothetical protein YNL024c" ytydr360w - 99,0,0,0 "null" "questionable ORF" ytypr050c - 99,0,0,0 "null" "questionable ORF" ytyfr021w - 99,0,0,0 "AUT10" "similarity to hypothetical protein YPL100w" ytybl095w - 99,0,0,0 "null" "similarity to C.albicans hypothetical protein" ytybr178w - 99,0,0,0 "null" "questionable ORF" ytybl096c - 99,0,0,0 "null" "questionable ORF" ytyjl022w - 99,0,0,0 "null" "questionable ORF" ytygl231c - 99,0,0,0 "null" "similarity to hypothetical protein SPCC1281.03c - S. pombe" ytyol077c - 99,0,0,0 "BRX1" "strong similarity to C.elegans K12H4.3 protein" ytybr005w - 99,0,0,0 "null" "strong similarity to hypothetical protein YDR003w" ytymr326c - 99,0,0,0 "null" "strong similarity to subtelomeric encoded proteins" ytydl012c - 99,0,0,0 "null" "strong similarity to hypothetical protein YBR016w and YDR210w" ytypr118w - 99,0,0,0 "null" "similarity to M.jannaschii translation initiation factor, eIF-2B" ytyor256c - 98,0,0,0 "null" "strong similarity to secretory protein SSP134P" ytyll019c - 98,0,0,0 "KNS1" "ser/thr protein kinase" ytydl187c - 99,0,0,0 "null" "questionable ORF" ytygr090w - 99,0,0,0 "null" "similarity to PIR:T40678 hypothetical protein SPBC776.08c S. pombe" ytyfr026c - 99,0,0,0 "null" "hypothetical protein" ytyjl120w - 99,0,0,0 "null" "questionable ORF" ytyor352w - 99,0,0,0 "null" "hypothetical protein" ytynl300w - 99,0,0,0 "TOS6" "similarity to MID2P" ytynl046w - 99,0,0,0 "null" "hypothetical protein" ytyml047w-a - 99,0,0,0 "null" "questionable ORF" ytyjr141w - 99,0,0,0 "null" "weak similarity to hypothetical protein SPBC1734.10c S. pombe" ytylr230w - 99,0,0,0 "null" "questionable ORF" ytyhr049c-a - 99,0,0,0 "null" "questionable ORF" ytygl239c - 99,0,0,0 "null" "questionable ORF" ytypl136w - 99,0,0,0 "null" "questionable ORF" ytypl137c - 99,0,0,0 "null" "similarity to microtubule-interacting protein MHP1P and to hypothetical protein YOR227w" ytyhr054c - 99,0,0,0 "null" "weak similarity to YOR262w" ytydr131c - 99,0,0,0 "null" "similarity to hypothetical protein YJL149w" ytyhl037c - 99,0,0,0 "null" "hypothetical protein" ytynr066c - 99,0,0,0 "null" "strong similarity to PEP1P" ytylr137w - 99,0,0,0 "null" "weak similarity to hypothetical S.pombe protein SPCC4G3" ytylr232w - 99,0,0,0 "null" "questionable ORF" ytylr072w - 99,0,0,0 "null" "similarity to YFL042c, YDR326c and YHR080c" ytyfl044c - 99,0,0,0 "null" "weak similarity to human dystrophin" ytypl073c - 99,0,0,0 "null" "questionable ORF" ytyor024w - 99,0,0,0 "null" "hypothetical protein" ytydl050c - 99,0,0,0 "null" "questionable ORF" ytycr001w - 99,0,0,0 "null" "weak similarity to chloride channel proteins" ytydr133c - 99,0,0,0 "null" "questionable ORF" ytyml101c-a - 99,0,0,0 "null" "questionable ORF" ytypr091c - 99,0,0,0 "null" "weak similarity to C.elegans LIM homeobox protein" ytypr157w - 99,0,0,0 "null" "strong similarity to YGR141w" ytybr300c - 99,0,0,0 "null" "strong similarity to hypothetical protein YGR293c" ytylr235c - 99,0,0,0 "null" "questionable ORF" ytybr046c - 98,0,0,0 "ZTA1" "similarity to zeta-crystallin" ytypr092w - 99,0,0,0 "null" "questionable ORF" ytybr206w - 99,0,0,0 "null" "questionable ORF" ytylr236c - 99,0,0,0 "null" "hypothetical protein" ytydl118w - 99,0,0,0 "null" "questionable ORF" ytygr022c - 99,0,0,0 "null" "questionable ORF" ytyel010w - 99,0,0,0 "null" "hypothetical protein" ytygl179c - 98,0,0,0 "TOS3" "strong similarity to PAK1P, ELM1P and KIN82P" ytyor391c - 99,0,0,0 "null" "strong similarity to YMR322c and YDR533c, identical to YPL280w" ytynl149c - 99,0,0,0 "null" "weak similarity to S.pombe hypothetical protein" ytylr077w - 99,0,0,0 "null" "weak similarity to Xenopus RCC1 protein" ytypl238c - 99,0,0,0 "null" "questionable ORF" ytyfl049w - 99,0,0,0 "null" "weak similarity to NPL6P" ytybr209w - 99,0,0,0 "null" "hypothetical protein" ytylr238w - 99,0,0,0 "null" "similarity to YDR200c" ytybr144c - 99,0,0,0 "null" "hypothetical protein" ytyjl161w - 99,0,0,0 "null" "hypothetical protein" ytygl007w - 99,0,0,0 "null" "questionable ORF" ytyjl067w - 99,0,0,0 "null" "questionable ORF" ytygr293c - 99,0,0,0 "null" "strong similarity to hypothetical protein YBR300c" ytylr173w - 99,0,0,0 "null" "hypothetical protein" ytydl151c - 99,0,0,0 "FYV3" "questionable ORF" ytyil032c - 99,0,0,0 "null" "hypothetical protein" ytynl181w - 99,0,0,0 "null" "similarity to hypothetical S. pombe protein" ytyel016c - 99,0,0,0 "null" "similarity to human nucleotide pyrophosphatase" ytydr236c - 98,0,0,0 "FMN1" "Riboflavin kinase" ytygr122w - 99,0,0,0 "null" "hypothetical protein" ytyol046c - 99,0,0,0 "null" "questionable ORF" ytymr134w - 99,0,0,0 "null" "hypothetical protein" ytybl065w - 99,0,0,0 "null" "questionable ORF" ytypl272c - 99,0,0,0 "null" "hypothetical protein" ytylr177w - 99,0,0,0 "null" "similarity to suppressor protein Psp5p" ytycr018c-a - 99,0,0,0 "null" "questionable ORF - identified by SAGE" ytydr078c - 99,0,0,0 "null" "hypothetical protein" ytynl010w - 99,0,0,0 "null" "weak similarity to B.subtilis hypothetical protein ykrX" ytydr333c - 99,0,0,0 "null" "similarity to hypothetical S. pombe protein" ytynl011c - 99,0,0,0 "null" "similarity to hypothetical A. thaliana protein T14G11.21" ytyor320c - 99,0,0,0 "null" "similarity to GNT1 alphaN-acetylglucosamine transferase K. lactis" ytydl091c - 99,0,0,0 "null" "weak similarity to mouse FAF1 protein" ytyjr012c - 99,0,0,0 "null" "weak similarity to hypothetical protein B17C10.80 N. crassa" ytycr043c - 99,0,0,0 "null" "hypothetical protein" ytylr101c - 99,0,0,0 "null" "questionable ORF" ytygr221c - 99,0,0,0 "TOS2" "similarity to hypothetical protein YHR149c" ytyor322c - 99,0,0,0 "null" "similarity to hypothetical S.pombe protein SPAC1F12.05" ytyor068c - 99,0,0,0 "null" "hypothetical protein" ytygr128c - 99,0,0,0 "null" "hypothetical protein" ytyil039w - 99,0,0,0 "null" "weak similarity to hypothetical protein SPAC23A1.02c S. pombe" ytypl103c - 99,0,0,0 "null" "similarity to hypothetical M. tuberculosis protein" ytykl063c - 99,0,0,0 "null" "weak similarity to mammalian microtubule-associated protein MAP 1B" ytydl094c - 99,0,0,0 "null" "questionable ORF" ytydr431w - 99,0,0,0 "null" "questionable ORF" ytyol146w - 99,0,0,0 "null" "weak similarity to hypothetical protein S. pombe" ytydr003w - 99,0,0,0 "null" "strong similarity to hypothetical protein YBR005w" ytyor324c - 99,0,0,0 "null" "similarity to YAL028w" ytypr121w - 99,0,0,0 "THI22" "similarity to B.subtilis transcriptional activator tenA" ytylr104w - 99,0,0,0 "null" "hypothetical protein" ytyfl010c - 99,0,0,0 "null" "questionable ORF" ytybr089w - 99,0,0,0 "null" "questionable ORF" ytyal036c - 99,0,0,0 "FUN11" "strong similarity to GTP-binding proteins" ytydl096c - 99,0,0,0 "null" "questionable ORF" ytylr279w - 99,0,0,0 "null" "questionable ORF" ytykl225w - 99,0,0,0 "null" "strong similarity to GIN11P, YKL225w and other subtelomeric encoded proteins" ytylr374c - 99,0,0,0 "null" "questionable ORF" ytyor166c - 99,0,0,0 "null" "similarity to PIR:T50422 hypothetical protein S. pombe" ytygr226c - 99,0,0,0 "null" "hypothetical protein" ytybr280c - 99,0,0,0 "null" "similarity to hypothetical protein S. pombe" ytyor008c-a - 98,0,0,0 "KIM1" "reduced growth in diepoxybutane and/or mitomycin C" ytycr049c - 99,0,0,0 "null" "questionable ORF" ytypl041c - 99,0,0,0 "null" "hypothetical protein" ytygr160w - 99,0,0,0 "FYV13" "weak similarity to C. elegans Y113G7B.12 protein of unknown function" ytydr101c - 99,0,0,0 "null" "weak similarity to proliferation-associated protein" ytyfl013c - 99,0,0,0 "IES1" "weak similarity to Dictyostelium protein kinase" ytybr013c - 99,0,0,0 "null" "hypothetical protein" ytylr376c - 99,0,0,0 "null" "hypothetical protein" ytylr042c - 99,0,0,0 "null" "hypothetical protein" ytylr108c - 99,0,0,0 "null" "strong similarity to YDR132c" ytydr102c - 99,0,0,0 "null" "hypothetical protein" ytydr008c - 99,0,0,0 "null" "questionable ORF" ytyer038w-a - 99,0,0,0 "null" "questionable ORF" ytyor262w - 99,0,0,0 "null" "similarity to YLR243w" ytydl193w - 99,0,0,0 "null" "similarity to N.crassa hypothetical 32 kDa protein" ytyjr114w - 99,0,0,0 "null" "questionable ORF" ytypr061c - 99,0,0,0 "null" "weak similarity to Synechococcus sp. DnaJ protein" ytygr069w - 99,0,0,0 "null" "questionable ORF" ytydr278c - 99,0,0,0 "null" "hypothetical protein" ytypl205c - 99,0,0,0 "null" "questionable ORF" ytygl081w - 99,0,0,0 "null" "hypothetical protein" ytylr379w - 99,0,0,0 "null" "questionable ORF" ytybr016w - 99,0,0,0 "null" "strong similarity to hypothetical proteins YDL012c and YDR210w" ytypr063c - 99,0,0,0 "null" "hypothetical protein" ytydl196w - 99,0,0,0 "null" "hypothetical protein" ytygl082w - 99,0,0,0 "null" "strong similarity to hypothetical protein YPL191c" ytydr200c - 99,0,0,0 "null" "similarity to hypothetical protein YLR238w" ytydl023c - 99,0,0,0 "null" "questionable ORF" ytyil066w-a - 99,0,0,0 "null" "questionable ORF" ytypl141c - 99,0,0,0 "null" "strong similarity to protein kinase KIN4P" ytyor267c - 99,0,0,0 "null" "similarity to ser/thr protein kinases" ytylr302c - 99,0,0,0 "null" "questionable ORF" ytydr470c - 99,0,0,0 "UGO1" "similarity to chromosome segregation protein CSE1P" ytyor268c - 99,0,0,0 "null" "hypothetical protein" ytygr262c - 98,0,0,0 "BUD32" "weak similarity to protein kinases and M.jannaschii O-sialoglycoprotein endopeptidase homolog" ytykl168c - 98,0,0,0 "KKQ8" "ser/thr protein kinase" ytygl085w - 99,0,0,0 "null" "weak similarity to Staphylococcus aureus nuclease (SNase)" ytyhr126c - 99,0,0,0 "null" "hypothetical protein" ytygr263c - 99,0,0,0 "null" "weak similarity to E.coli lipase like enzyme" ytykl169c - 99,0,0,0 "null" "questionable ORF" ytydr203w - 99,0,0,0 "null" "questionable ORF" ytydl121c - 99,0,0,0 "null" "hypothetical protein" ytymr007w - 99,0,0,0 "null" "hypothetical protein" ytykr013w - 99,0,0,0 "PRY2" "similarity to the plant PR-1 class of pathogen related proteins" ytynl311c - 99,0,0,0 "null" "hypothetical protein" ytyer145c-a - 99,0,0,0 "null" "questionable ORF" ytynr074c - 99,0,0,0 "null" "weak similarity to B.subtilis nitrite reductase (nirB)" ytymr103c - 99,0,0,0 "null" "hypothetical protein" ytyir020c - 99,0,0,0 "null" "hypothetical protein" ytydr539w - 99,0,0,0 "null" "similarity to E.coli hypothetical 55.3 kDa protein in rfah-rfe intergenic region" ytyol014w - 99,0,0,0 "null" "hypothetical protein" ytyhl045w - 99,0,0,0 "null" "strong similarity to subtelomeric encoded proteins" ytyll063c - 99,0,0,0 "AYT1" "strong similarity to Gibberella zeae trichothecene 3-O-acetyltransferase" ytylr400w - 99,0,0,0 "null" "hypothetical protein" ytyil003w - 99,0,0,0 "DRE3" "strong similarity to NBP35P and human nucleotide-binding protein" ytylr080w - 98,0,0,0 "null" "strong similarity to EMP47P" ytynl058c - 99,0,0,0 "null" "similarity to YIL117c" ytyol015w - 99,0,0,0 "null" "weak similarity to YKR015c" ytymr086c-a - 99,0,0,0 "null" "questionable ORF" ytygr266w - 99,0,0,0 "null" "hypothetical protein" ytydr048c - 99,0,0,0 "null" "questionable ORF" ytyll066c - 99,0,0,0 "null" "strong similarity to subtelomeric encoded proteins" ytyil100w - 99,0,0,0 "null" "similarity to mouse Gcap1 protein and fruit fly Bkm-like sex-determining region hypothetical protein CS314" ytylr243w - 99,0,0,0 "null" "strong similarity to YOR262w" ytyjl072c - 99,0,0,0 "null" "similarity to PIR:T40665 hypothetical protein SPBC725.13c S. pombe" ytyll067c - 99,0,0,0 "null" "strong similarity to subtelomeric encoded proteins" ytydr049w - 99,0,0,0 "null" "similarity to C.elegans K06H7.3 protein" ytyhr070c-a - 99,0,0,0 "null" "questionable ORF" ytycr013c - 99,0,0,0 "null" "similarity to M.leprae B1496_F1_41 protein" ytyer138w-a - 99,0,0,0 "null" "questionable ORF - identified by SAGE" ytyfr036w-a - 99,0,0,0 "null" "questionable ORF" ytygr031w - 99,0,0,0 "null" "similarity to hypothetical protein YGR015c and weak similarity H.influenzae dihydrolipoamide acetyltransferase" ytyjr157w - 99,0,0,0 "null" "hypothetical protein" ytyjl075c - 99,0,0,0 "null" "questionable ORF" ytygl110c - 99,0,0,0 "null" "similarity to hypothetical protein SPCC1906.02c S. pombe" ytygr033c - 99,0,0,0 "null" "weak similarity to TRCDSEMBLNEW:AP002861_10 Oryza sativa" ytyjl077c - 99,0,0,0 "ICS3" "hypothetical protein" ytypl183c - 99,0,0,0 "null" "similarity to TAF90P" ytybl071c - 99,0,0,0 "null" "hypothetical protein" ytypl249c - 99,0,0,0 "GYP5" "similarity to mouse Tbc1 protein" ytyor135c - 99,0,0,0 "null" "questionable ORF" ytydr149c - 99,0,0,0 "null" "questionable ORF" ytypl184c - 99,0,0,0 "null" "weak similarity to PUB1P" ytyhr063w-a - 99,0,0,0 "null" "questionable ORF" ytyol053w - 99,0,0,0 "null" "hypothetical protein" ytybr090c - 99,0,0,0 "null" "questionable ORF" ytypl185w - 99,0,0,0 "null" "questionable ORF" ytybl073w - 99,0,0,0 "null" "questionable ORF" ytyil108w - 99,0,0,0 "null" "similarity to hypothetical S. pombe protein" ytymr209c - 99,0,0,0 "null" "similarity to conserved hypothetical protein S. pombe" ytymr049c - 99,0,0,0 "ERB1" "weak similarity to A.thaliana PRL1 protein" ytypl280w - 99,0,0,0 "null" "strong similarity to YMR322c and YDR533c" ytyor138c - 99,0,0,0 "null" "weak similarity to TRCDSEMBL:AF175293_2 gene: vanSD sensor protein kinase Enterococcus faecium strain vanD glycopeptide resistance gene cluster" ytybl107w-a - 99,0,0,0 "null" "questionable ORF - identified by SAGE" ytydr340w - 99,0,0,0 "null" "questionable ORF" ytydl163w - 99,0,0,0 "null" "questionable ORF" ytyor139c - 99,0,0,0 "null" "questionable ORF" ytymr305c - 98,0,0,0 "SCW10" "similarity to B.japonicum putative beta-(-6)glucan transferase" ytyml128c - 99,0,0,0 "MSC1" "weak similarity to S. pombe SPBC365.12c protein of unknown function" ytydr247w - 99,0,0,0 "null" "strong similarity to SKS1P" ytygr039w - 99,0,0,0 "null" "questionable ORF" ytypl188w - 99,0,0,0 "POS5" "similarity to UTR1P and YEL041w" ytyel028w - 99,0,0,0 "null" "hypothetical protein" ytyjr020w - 99,0,0,0 "null" "questionable ORF" ytyjl003w - 99,0,0,0 "null" "weak similarity to hypothetical protein SPAC1486.08 S. pombe" ytylr283w - 99,0,0,0 "null" "weak similarity to SMC2P" ytyal056c-a - 99,0,0,0 "KRE20" "questionable ORF" ytylr349w - 99,0,0,0 "null" "questionable ORF" ytyjl178c - 99,0,0,0 "null" "hypothetical protein" ytyor235w - 99,0,0,0 "null" "questionable ORF" ytyhl010c - 99,0,0,0 "null" "similarity to C.elegans hypothetical protein, homolog to human breast cancer-associated protein BRAP2" ytyil141w - 99,0,0,0 "null" "questionable ORF" ytydr505c - 98,0,0,0 "PSP1" "high copy suppressor of ts mutations in DNA polymerase alpha" ytylr111w - 99,0,0,0 "null" "hypothetical protein" ytylr285w - 99,0,0,0 "null" "weak similarity to A.thaliana hypothetical protein" ytycr054c - 99,0,0,0 "CTR86" "weak similarity to THR4P" ytyol154w - 99,0,0,0 "null" "similarity to S.fumigata Asp FII" ytygr137w - 99,0,0,0 "null" "questionable ORF" ytydr186c - 99,0,0,0 "null" "hypothetical protein" ytynl024c - 99,0,0,0 "null" "weak similarity to YBR271w and YJR129c" ytylr446w - 99,0,0,0 "null" "weak similarity to hexokinases" ytylr112w - 99,0,0,0 "null" "hypothetical protein" ytyjl007c - 99,0,0,0 "null" "hypothetical protein" ytynl293w - 99,0,0,0 "MSB3" "similarity to Mic1p and human transforming protein tre-2, and strong similarity to YOL112w" ytybr099c - 99,0,0,0 "null" "weak similarity to T.brucei mitochondrion hypothetical protein 6" ytynr042w - 99,0,0,0 "null" "hypothetical protein" ytydr282c - 99,0,0,0 "null" "similarity to hypothetical protein YDL001w, YFR048w and S.pombe hypothetical protein SPAC12G12.14" ytyal045c - 99,0,0,0 "null" "hypothetical protein" ytynl120c - 99,0,0,0 "null" "questionable ORF" ytygl217c - 99,0,0,0 "null" "questionable ORF" ytymr085w - 99,0,0,0 "null" "strong similarity to GFA1P - putative pseudogene" ytydr442w - 99,0,0,0 "null" "questionable ORF" ytygr235c - 99,0,0,0 "null" "hypothetical protein" ytydr015c - 99,0,0,0 "null" "hypothetical protein" ytydr509w - 99,0,0,0 "null" "questionable ORF" ytylr384c - 98,0,0,0 "IKI3" "confers sensitivity to killer toxin" ytyer068c-a - 99,0,0,0 "null" "questionable ORF" ytycr059c - 99,0,0,0 "YIH1" "weak similarity to hypothetical protein YDL177c" ytyjl105w - 99,0,0,0 "null" "similarity to hypothetical protein YKR029c" ytynl028w - 99,0,0,0 "null" "questionable ORF" ytynl123w - 99,0,0,0 "null" "weak similarity to C.jejuni serine protease" ytykl077w - 99,0,0,0 "null" "hypothetical protein" ytylr118c - 98,0,0,0 "null" "similarity to several esterases" ytylr213c - 99,0,0,0 "CRR1" "similarity to CRH1P cell wall protein" ytyhr130c - 99,0,0,0 "null" "weak similarity to T.brucei H+-transporting ATP synthase" ytyjl202c - 99,0,0,0 "null" "questionable ORF" ytyel068c - 99,0,0,0 "null" "hypothetical protein" ytygr079w - 99,0,0,0 "null" "hypothetical protein" ytyar068w - 99,0,0,0 "null" "strong similarity to hypothetical protein YHR214w-a" ytydr288w - 99,0,0,0 "null" "hypothetical protein" ytymr187c - 99,0,0,0 "null" "hypothetical protein" ytyfl027c - 99,0,0,0 "GYP8" "weak similarity to P.falciparum Pfmdr2 protein" ytydr544c - 99,0,0,0 "null" "strong similarity to subtelomeric encoded proteins" ytyhl050c - 99,0,0,0 "null" "strong similarity to subtelomeric encoded proteins" ytynl127w - 99,0,0,0 "null" "similarity to C.elegans hypothetical protein" ytyjr061w - 99,0,0,0 "null" "similarity to MNN4P" ytydl033c - 99,0,0,0 "null" "similarity to H.influenzae hypothetical protein HI0174" ytylr311c - 99,0,0,0 "null" "weak similarity to S.tarentolae cryptogene protein G4" ytyjr129c - 99,0,0,0 "null" "weak similarity to hypothetical protein YNL024c" ytylr057w - 99,0,0,0 "null" "weak similarity to mouse alpha-mannosidase" ytylr312c - 99,0,0,0 "null" "hypothetical protein" ytydl034w - 99,0,0,0 "null" "questionable ORF" ytymr153c-a - 99,0,0,0 "null" "questionable ORF" ytypr170c - 99,0,0,0 "null" "hypothetical protein" ytyor104w - 99,0,0,0 "PIN2" "hypothetical protein" ytyor105w - 99,0,0,0 "null" "questionable ORF" ytyhl006w-a - 99,0,0,0 "null" "questionable ORF" ytypr077c - 99,0,0,0 "null" "questionable ORF" ytyor200w - 99,0,0,0 "null" "questionable ORF" ytyhr138c - 99,0,0,0 "null" "hypothetical protein" ytygl258w - 99,0,0,0 "null" "strong similarity to hypothetical protein YOR387c" ytygl098w - 99,0,0,0 "null" "hypothetical protein" ytydr056c - 99,0,0,0 "null" "hypothetical protein" ytydl039c - 99,0,0,0 "PRM7" "hypothetical protein" ytygl259w - 99,0,0,0 "YPS5" "similarity to hypothetical aspartyl proteinase YIR039C" ytyol026c - 99,0,0,0 "null" "hypothetical protein" ytypl251w - 99,0,0,0 "null" "questionable ORF" ytyor203w - 99,0,0,0 "null" "questionable ORF" ytyer087c-a - 99,0,0,0 "null" "questionable ORF" ytybr063c - 99,0,0,0 "null" "hypothetical protein" ytyol027c - 99,0,0,0 "null" "similarity to YPR125w" ytyfl063w - 99,0,0,0 "null" "strong similarity to subtelomeric encoded proteins" ytymr115w - 99,0,0,0 "null" "similarity to YKL133c" ytybl047c - 99,0,0,0 "EDE1" "similarity to mouse eps15R protein" ytyor205c - 99,0,0,0 "null" "hypothetical protein" ytydr153c - 99,0,0,0 "null" "weak similarity to lqf protein D. melanogaster" ytypr002w - 99,0,0,0 "PDH1" "similarity to B.subtilis mmgE protein" ytyil016w - 98,0,0,0 "SNL1" "high copy suppressor of NUP116, GLE2 and NIC96 alleles" ytypr177c - 99,0,0,0 "null" "questionable ORF" ytyfl066c - 99,0,0,0 "null" "strong similarity to subtelomeric encoded proteins" ytyil112w - 99,0,0,0 "null" "similarity to ankyrin and coiled-coil proteins" ytyar030c - 99,0,0,0 "null" "hypothetical protein" ytyml036w - 99,0,0,0 "null" "weak similarity to C.elegans hypothetical protein CELW03F8" ytybr162c - 99,0,0,0 "TOS1" "similarity to hypothetical protein YJL171c" ytydl233w - 99,0,0,0 "null" "hypothetical protein" ytydr316w - 99,0,0,0 "null" "similarity to hypothetical ubiquitin system protein S. pombe" ytypl192c - 99,0,0,0 "PRM3" "hypothetical protein" ytypl098c - 99,0,0,0 "null" "similarity to S.pombe hypothetical protein" ytymr215w - 99,0,0,0 "null" "similarity to GAS1 protein" ytymr216c - 99,0,0,0 "SKY1" "similarity to S.pombe dsk1, human SRPK1 and other protein kinases" ytypl099c - 99,0,0,0 "null" "weak similarity to Sulfolobus hypothetical protein" ytyil050w - 98,0,0,0 "PCL7" "cyclin like protein interacting with PHO85P" ytylr419w - 98,0,0,0 "null" "similarity to helicases" ------------------