Rule 1403: t11Point5_regression > 0.829 ndt80_delete_early_regression > 4.683 t5_g/r_ratio > 2.76 t11Point5_g/r_ratio <= 2.72 -> class 5/1/0/0 "ribosome biogenesis" Evaluation on training data (1599 items): ytybr031w 40,3,0,0 "RPL4A" "ribosomal protein" 5,1,0,0 "RPL4A" "ribosomal protein" ytybr181c 40,3,0,0 "RPS6B" "ribosomal protein S6.e" 5,1,0,0 "RPS6B" "ribosomal protein S6.e" ytydl082w 40,3,0,0 "RPL13A" "60S large subunit ribosomal protein L13" 5,1,0,0 "RPL13A" "60S large subunit ribosomal protein L13" ytydr064w 40,3,0,0 "RPS13" "ribosomal protein" 5,1,0,0 "RPS13" "ribosomal protein" ytyer056c-a 40,3,0,0 "RPL34A" "ribosomal protein L34" 5,1,0,0 "RPL34A" "ribosomal protein L34" ytyer117w 40,3,0,0 "RPL23B" "ribosomal protein L23.e" 5,1,0,0 "RPL23B" "ribosomal protein L23.e" ytyer131w 40,3,0,0 "RPS26B" "40S small subunit ribosomal protein S26e-c5" 5,1,0,0 "RPS26B" "40S small subunit ribosomal protein S26e-c5" ytygl147c 40,3,0,0 "RPL9A" "ribosomal protein L9.e" 5,1,0,0 "RPL9A" "ribosomal protein L9.e" ytygl189c 40,3,0,0 "RPS26A" "40S small subunit ribosomal protein S26e.c7" 5,1,0,0 "RPS26A" "40S small subunit ribosomal protein S26e.c7" ytygr148c 40,3,0,0 "RPL24B" "60S large subunit ribosomal protein L24.e.B" 5,1,0,0 "RPL24B" "60S large subunit ribosomal protein L24.e.B" ytyhl015w 40,3,0,0 "RPS20" "ribosomal protein" 5,1,0,0 "RPS20" "ribosomal protein" ytyhr010w 40,3,0,0 "RPL27A" "60S large subunit ribosomal protein L27.e" 5,1,0,0 "RPL27A" "60S large subunit ribosomal protein L27.e" ytyhr141c 40,3,0,0 "RPL42B" "ribosomal protein L36a.e" 5,1,0,0 "RPL42B" "ribosomal protein L36a.e" ytyil018w 40,3,0,0 "RPL2B" "60S large subunit ribosomal protein L8.e" 5,1,0,0 "RPL2B" "60S large subunit ribosomal protein L8.e" ytyil052c 40,3,0,0 "RPL34B" "ribosomal protein L34.e" 5,1,0,0 "RPL34B" "ribosomal protein L34.e" ytyil133c 40,3,0,0 "RPL16A" "60S large subunit ribosomal protein" 5,1,0,0 "RPL16A" "60S large subunit ribosomal protein" ytyjl177w 40,3,0,0 "RPL17B" "60s large subunit ribosomal protein L17.e" 5,1,0,0 "RPL17B" "60s large subunit ribosomal protein L17.e" ytyjr123w 40,3,0,0 "RPS5" "ribosomal protein S5.e" 5,1,0,0 "RPS5" "ribosomal protein S5.e" ytykl006w 40,3,0,0 "RPL14A" "ribosomal protein" 5,1,0,0 "RPL14A" "ribosomal protein" ytykl056c 40,3,0,0 "null" "strong similarity to human IgE-dependent histamine-releasing factor" 5,1,0,0 "null" "strong similarity to human IgE-dependent histamine-releasing factor" ytylr048w 40,3,0,0 "RPS0B" "40S ribosomal protein p40 homolog B" 5,1,0,0 "RPS0B" "40S ribosomal protein p40 homolog B" 6,10,0,0 "RPS0B" "40S ribosomal protein p40 homolog B" ytylr061w 5,1,0,0 "RPL22A" "ribosomal protein" ytykr057w 40,3,0,0 "RPS21A" "ribosomal protein S21.e" 5,1,0,0 "RPS21A" "ribosomal protein S21.e" ytylr340w 40,3,0,0 "RPP0" "acidic ribosomal protein L10.e" 5,1,0,0 "RPP0" "acidic ribosomal protein L10.e" ytylr448w 40,3,0,0 "RPL6B" "60S large subunit ribosomal protein" 5,1,0,0 "RPL6B" "60S large subunit ribosomal protein" ytynl067w 40,3,0,0 "RPL9B" "ribosomal protein L9.e.c14" 5,1,0,0 "RPL9B" "ribosomal protein L9.e.c14" ytynl178w 40,3,0,0 "RPS3" "ribosomal protein S3.e" 5,1,0,0 "RPS3" "ribosomal protein S3.e" ytynl301c 40,3,0,0 "RPL18B" "60S large subunit ribosomal protein L18.e" 5,1,0,0 "RPL18B" "60S large subunit ribosomal protein L18.e" ytyol120c 40,3,0,0 "RPL18A" "60S large subunit ribosomal protein S18.e" 5,1,0,0 "RPL18A" "60S large subunit ribosomal protein S18.e" ytyor293w 40,3,0,0 "RPS10A" "ribosomal protein S10.e" 5,1,0,0 "RPS10A" "ribosomal protein S10.e" ytyor369c 40,3,0,0 "RPS12" "40S small subunit acidic ribosomal protein S12" 5,1,0,0 "RPS12" "40S small subunit acidic ribosomal protein S12" ytypl131w 40,3,0,0 "RPL5" "60S large subunit ribosomal protein L5.e" 5,1,0,0 "RPL5" "60S large subunit ribosomal protein L5.e" ytypr132w 40,3,0,0 "RPS23B" "40S small subunit ribosomal protein S23.e" 5,1,0,0 "RPS23B" "40S small subunit ribosomal protein S23.e" Training Accuracy: 33/33 (100.00%) Training Frequency class '5/1/0/0': 83/1599 (5.19%) Evaluation on validation data (838 items): ytydr012w 40,3,0,0 "RPL4B" "ribosomal protein L4.e.B" 5,1,0,0 "RPL4B" "ribosomal protein L4.e.B" ytyel054c 40,3,0,0 "RPL12A" "60S large subunit ribosomal protein L12.e" 5,1,0,0 "RPL12A" "60S large subunit ribosomal protein L12.e" ytyer102w 40,3,0,0 "RPS8B" "ribosomal protein S8.e" 5,1,0,0 "RPS8B" "ribosomal protein S8.e" ytyhr203c 40,3,0,0 "RPS4B" "ribosomal protein S4.e.c8" 5,1,0,0 "RPS4B" "ribosomal protein S4.e.c8" ytyjr145c 40,3,0,0 "RPS4A" "ribosomal protein S4.e.c10" 5,1,0,0 "RPS4A" "ribosomal protein S4.e.c10" ytylr075w 3,3,1,0 "RPL10" "60S large subunit ribosomal protein" 40,3,0,0 "RPL10" "60S large subunit ribosomal protein" 5,1,0,0 "RPL10" "60S large subunit ribosomal protein" 6,10,0,0 "RPL10" "60S large subunit ribosomal protein" ytylr325c 40,3,0,0 "RPL38" "60S large subunit ribosomal protein" 5,1,0,0 "RPL38" "60S large subunit ribosomal protein" ytylr388w 40,3,0,0 "RPS29A" "ribosomal protein S29.e.A" 5,1,0,0 "RPS29A" "ribosomal protein S29.e.A" ytylr441c 14,4,3,3 "RPS1A" "ribosomal protein S3a.e" 40,3,0,0 "RPS1A" "ribosomal protein S3a.e" 5,1,0,0 "RPS1A" "ribosomal protein S3a.e" ytynl096c 40,3,0,0 "RPS7B" "strong similarity to ribosomal protein S7" 5,1,0,0 "RPS7B" "strong similarity to ribosomal protein S7" ytynl162w 40,3,0,0 "RPL42A" "ribosomal protein L36a.e" 5,1,0,0 "RPL42A" "ribosomal protein L36a.e" ytynl302c 40,3,0,0 "RPS19B" "40S small subunit ribosomal protein S19.e" 5,1,0,0 "RPS19B" "40S small subunit ribosomal protein S19.e" ytyol010w - 4,99,0,0 "RCL1" "similarity to human RNA 3'-terminal phosphate cyclase" ytyor096w 40,3,0,0 "RPS7A" "ribosomal protein" 5,1,0,0 "RPS7A" "ribosomal protein" ytyor133w - 40,3,0,0 "EFT1" "translation elongation factor eEF2" 5,4,0,0 "EFT1" "translation elongation factor eEF2" ytyol121c 40,3,0,0 "RPS19A" "40S small subunit ribosomal protein S19.e" 5,1,0,0 "RPS19A" "40S small subunit ribosomal protein S19.e" ytypr102c 40,3,0,0 "RPL11A" "ribosomal protein L11.e" 5,1,0,0 "RPL11A" "ribosomal protein L11.e" Validation Accuracy: 15/17 (88.24%) Validation Frequency class '5/1/0/0': 41/838 (4.89%) Evaluation on propertest data (1267 items): ytybl072c 40,3,0,0 "RPS8A" "ribosomal protein S8.e" 5,1,0,0 "RPS8A" "ribosomal protein S8.e" ytycr031c 40,3,0,0 "RPS14A" "40S Ribosomal protein S14.e" 5,1,0,0 "RPS14A" "40S Ribosomal protein S14.e" ytydl083c 40,3,0,0 "RPS16B" "ribosomal protein S16.e" 5,1,0,0 "RPS16B" "ribosomal protein S16.e" ytydr184c - 13,1,1,0 "ATC1" "binds Aip3p" 30,4,0,0 "ATC1" "binds Aip3p" ytydr382w 40,3,0,0 "RPP2B" "60S large subunit acidic ribosomal protein" 5,1,0,0 "RPP2B" "60S large subunit acidic ribosomal protein" ytydr418w 40,3,0,0 "RPL12B" "60S large subunit ribosomal protein L12.e" 5,1,0,0 "RPL12B" "60S large subunit ribosomal protein L12.e" ytyer006w - 8,16,0,0 "null" "similarity to P.polycephalum myosin-related protein mlpA" ytyer074w 40,3,0,0 "RPS24A" "40s small subunit ribosomal protein S24.e" 5,1,0,0 "RPS24A" "40s small subunit ribosomal protein S24.e" ytygl031c 40,3,0,0 "RPL24A" "60S large subunit ribosomal protein L24.e.A" 5,1,0,0 "RPL24A" "60S large subunit ribosomal protein L24.e.A" ytygl123w 40,3,0,0 "RPS2" "40S small subunit ribosomal protein" 5,1,0,0 "RPS2" "40S small subunit ribosomal protein" ytygl135w 40,3,0,0 "RPL1B" "60S large subunit ribosomal protein" 5,1,0,0 "RPL1B" "60S large subunit ribosomal protein" ytygr085c 40,3,0,0 "RPL11B" "ribosomal protein" 5,1,0,0 "RPL11B" "ribosomal protein" ytygr118w 40,3,0,0 "RPS23A" "40S small subunit ribosomal protein S23.e" 5,1,0,0 "RPS23A" "40S small subunit ribosomal protein S23.e" ytyjl136c 40,3,0,0 "RPS21B" "40S small subunit ribosomal protein S21.e" 5,1,0,0 "RPS21B" "40S small subunit ribosomal protein S21.e" ytylr058c - 1,3,1,0 "SHM2" "serine hydroxymethyltransferase, cytoplasmic" 1,6,1,0 "SHM2" "serine hydroxymethyltransferase, cytoplasmic" 40,3,0,0 "SHM2" "serine hydroxymethyltransferase, cytoplasmic" ytylr367w 40,3,0,0 "RPS22B" "ribosomal protein S15a.e.c12" 5,1,0,0 "RPS22B" "ribosomal protein S15a.e.c12" ytyml063w 40,3,0,0 "RPS1B" "ribosomal protein S3a.e" 5,1,0,0 "RPS1B" "ribosomal protein S3a.e" ytymr242c 40,3,0,0 "RPL20A" "60s large subunit ribosomal protein" 5,1,0,0 "RPL20A" "60s large subunit ribosomal protein" ytynl069c 40,3,0,0 "RPL16B" "60S large subunit ribosomal protein" 5,1,0,0 "RPL16B" "60S large subunit ribosomal protein" ytynl119w 5,1,0,0 "null" "weak similarity to M.jannaschii hypothetical protein MJ1257" ytyor063w 40,3,0,0 "RPL3" "60S large subunit ribosomal protein L3.e" 5,1,0,0 "RPL3" "60S large subunit ribosomal protein L3.e" ytyor095c - 1,5,1,0 "RKI1" "D-ribose-5-phosphate ketol-isomerase" 2,7,0,0 "RKI1" "D-ribose-5-phosphate ketol-isomerase" 40,3,0,0 "RKI1" "D-ribose-5-phosphate ketol-isomerase" ytyol127w 40,3,0,0 "RPL25" "ribosomal protein L23a.e" 5,1,0,0 "RPL25" "ribosomal protein L23a.e" ytyol039w 40,3,0,0 "RPP2A" "acidic ribosomal protein P2.beta" 5,1,0,0 "RPP2A" "acidic ribosomal protein P2.beta" ytyol040c 40,3,0,0 "RPS15" "40S small subunit ribosomal protein" 5,1,0,0 "RPS15" "40S small subunit ribosomal protein" ytypl079w 40,3,0,0 "RPL21B" "ribosomal protein L21" 5,1,0,0 "RPL21B" "ribosomal protein L21" ytypl081w 40,3,0,0 "RPS9A" "ribosomal protein S9.e.A" 5,1,0,0 "RPS9A" "ribosomal protein S9.e.A" ytypl090c 40,3,0,0 "RPS6A" "ribosomal protein S6.e" 5,1,0,0 "RPS6A" "ribosomal protein S6.e" ytypl143w 40,3,0,0 "RPL33A" "ribosomal protein L35a.e.c16" 5,1,0,0 "RPL33A" "ribosomal protein L35a.e.c16" ytypl220w 40,3,0,0 "RPL1A" "ribosomal protein" 5,1,0,0 "RPL1A" "ribosomal protein" Propertest Accuracy: 26/30 (86.67%) Propertest Frequency class '5/1/0/0': 67/1267 (5.29%) New (unknown) data (838 items): ytybr005w - 99,0,0,0 "null" "strong similarity to hypothetical protein YDR003w" ytydr417c - 99,0,0,0 "null" "questionable ORF" ytyjl107c - 99,0,0,0 "null" "similarity to hypothetical S. pombe protein" ytylr222c - 99,0,0,0 "CST29" "similarity to DIP2P" ytylr062c - 99,0,0,0 "BUD28" "questionable ORF" ytylr076c - 99,0,0,0 "null" "questionable ORF" ytylr339c - 99,0,0,0 "null" "questionable ORF" ytyol150c - 99,0,0,0 "null" "questionable ORF" ytypl142c - 99,0,0,0 "null" "questionable ORF" ------------------ Rule 1326: t0Point5_g/r_ratio > 3.26 t5_g/r_ratio > 2.16 t11Point5_g/r_ratio <= 1.61 ndt80_delete_early_g/r_ratio > 1.16 -> class 5/1/0/0 "ribosome biogenesis" Evaluation on training data (1599 items): ytybr084c-a 40,3,0,0 "RPL19A" "60S large subunit ribosomal protein L19.e" 5,1,0,0 "RPL19A" "60S large subunit ribosomal protein L19.e" ytydl075w 40,3,0,0 "RPL31A" "60S large subunit ribosomal protein L31.e" 5,1,0,0 "RPL31A" "60S large subunit ribosomal protein L31.e" ytydl191w 40,3,0,0 "RPL35A" "60S large subunit ribosomal protein" 5,1,0,0 "RPL35A" "60S large subunit ribosomal protein" ytydr025w 40,3,0,0 "RPS11A" "ribosomal protein S11.e" 5,1,0,0 "RPS11A" "ribosomal protein S11.e" ytydr064w 40,3,0,0 "RPS13" "ribosomal protein" 5,1,0,0 "RPS13" "ribosomal protein" ytydr447c 40,3,0,0 "RPS17B" "ribosomal protein S17.e.B" 5,1,0,0 "RPS17B" "ribosomal protein S17.e.B" ytyer056c-a 40,3,0,0 "RPL34A" "ribosomal protein L34" 5,1,0,0 "RPL34A" "ribosomal protein L34" ytyer117w 40,3,0,0 "RPL23B" "ribosomal protein L23.e" 5,1,0,0 "RPL23B" "ribosomal protein L23.e" ytyer131w 40,3,0,0 "RPS26B" "40S small subunit ribosomal protein S26e-c5" 5,1,0,0 "RPS26B" "40S small subunit ribosomal protein S26e-c5" ytygl030w 40,3,0,0 "RPL30" "60S large subunit ribosomal protein L30.e" 5,1,0,0 "RPL30" "60S large subunit ribosomal protein L30.e" ytygl147c 40,3,0,0 "RPL9A" "ribosomal protein L9.e" 5,1,0,0 "RPL9A" "ribosomal protein L9.e" ytygl189c 40,3,0,0 "RPS26A" "40S small subunit ribosomal protein S26e.c7" 5,1,0,0 "RPS26A" "40S small subunit ribosomal protein S26e.c7" ytygr148c 40,3,0,0 "RPL24B" "60S large subunit ribosomal protein L24.e.B" 5,1,0,0 "RPL24B" "60S large subunit ribosomal protein L24.e.B" ytygr214w 14,4,3,1 "RPS0A" "40S ribosomal protein p40 homolog A" 40,3,0,0 "RPS0A" "40S ribosomal protein p40 homolog A" 5,1,0,0 "RPS0A" "40S ribosomal protein p40 homolog A" 6,10,0,0 "RPS0A" "40S ribosomal protein p40 homolog A" ytyhr010w 40,3,0,0 "RPL27A" "60S large subunit ribosomal protein L27.e" 5,1,0,0 "RPL27A" "60S large subunit ribosomal protein L27.e" ytyhr021c 40,3,0,0 "RPS27B" "ribosomal protein S27.e" 5,1,0,0 "RPS27B" "ribosomal protein S27.e" ytyhr141c 40,3,0,0 "RPL42B" "ribosomal protein L36a.e" 5,1,0,0 "RPL42B" "ribosomal protein L36a.e" ytyil052c 40,3,0,0 "RPL34B" "ribosomal protein L34.e" 5,1,0,0 "RPL34B" "ribosomal protein L34.e" ytyil133c 40,3,0,0 "RPL16A" "60S large subunit ribosomal protein" 5,1,0,0 "RPL16A" "60S large subunit ribosomal protein" ytykl006w 40,3,0,0 "RPL14A" "ribosomal protein" 5,1,0,0 "RPL14A" "ribosomal protein" ytylr048w 40,3,0,0 "RPS0B" "40S ribosomal protein p40 homolog B" 5,1,0,0 "RPS0B" "40S ribosomal protein p40 homolog B" 6,10,0,0 "RPS0B" "40S ribosomal protein p40 homolog B" ytylr061w 5,1,0,0 "RPL22A" "ribosomal protein" ytylr344w 40,3,0,0 "RPL26A" "60S large subunit ribosomal protein" 5,1,0,0 "RPL26A" "60S large subunit ribosomal protein" ytylr448w 40,3,0,0 "RPL6B" "60S large subunit ribosomal protein" 5,1,0,0 "RPL6B" "60S large subunit ribosomal protein" ytynl301c 40,3,0,0 "RPL18B" "60S large subunit ribosomal protein L18.e" 5,1,0,0 "RPL18B" "60S large subunit ribosomal protein L18.e" ytyor182c 40,3,0,0 "RPS30B" "ribosomal protein S30" 5,1,0,0 "RPS30B" "ribosomal protein S30" ytyor234c 5,1,0,0 "RPL33B" "ribosomal protein L35a.e.c15" ytyor293w 40,3,0,0 "RPS10A" "ribosomal protein S10.e" 5,1,0,0 "RPS10A" "ribosomal protein S10.e" ytyor312c 40,3,0,0 "RPL20B" "60S large subunit ribosomal protein" 5,1,0,0 "RPL20B" "60S large subunit ribosomal protein" ytyor369c 40,3,0,0 "RPS12" "40S small subunit acidic ribosomal protein S12" 5,1,0,0 "RPS12" "40S small subunit acidic ribosomal protein S12" Training Accuracy: 30/30 (100.00%) Training Frequency class '5/1/0/0': 83/1599 (5.19%) Evaluation on validation data (838 items): ytyal025c - 3,3,1,0 "MAK16" "nuclear viral propagation protein" 40,10,0,0 "MAK16" "nuclear viral propagation protein" ytybr182c - 4,5,1,4 "SMP1" "MADS-box transcription factor" 40,10,0,0 "SMP1" "MADS-box transcription factor" ytydl130w 40,3,0,0 "RPP1B" "60S large subunit acidic ribosomal protein L44prime" 5,1,0,0 "RPP1B" "60S large subunit acidic ribosomal protein L44prime" ytydl136w 40,3,0,0 "RPL35B" "60S large subunit ribosomal protein" 5,1,0,0 "RPL35B" "60S large subunit ribosomal protein" ytylr197w - 4,1,4,0 "SIK1" "involved in pre-rRNA processing" 40,10,0,0 "SIK1" "involved in pre-rRNA processing" ytylr325c 40,3,0,0 "RPL38" "60S large subunit ribosomal protein" 5,1,0,0 "RPL38" "60S large subunit ribosomal protein" ytylr388w 40,3,0,0 "RPS29A" "ribosomal protein S29.e.A" 5,1,0,0 "RPS29A" "ribosomal protein S29.e.A" ytylr441c 14,4,3,3 "RPS1A" "ribosomal protein S3a.e" 40,3,0,0 "RPS1A" "ribosomal protein S3a.e" 5,1,0,0 "RPS1A" "ribosomal protein S3a.e" ytynl096c 40,3,0,0 "RPS7B" "strong similarity to ribosomal protein S7" 5,1,0,0 "RPS7B" "strong similarity to ribosomal protein S7" ytynl162w 40,3,0,0 "RPL42A" "ribosomal protein L36a.e" 5,1,0,0 "RPL42A" "ribosomal protein L36a.e" ytynl302c 40,3,0,0 "RPS19B" "40S small subunit ribosomal protein S19.e" 5,1,0,0 "RPS19B" "40S small subunit ribosomal protein S19.e" ytyor096w 40,3,0,0 "RPS7A" "ribosomal protein" 5,1,0,0 "RPS7A" "ribosomal protein" ytyol121c 40,3,0,0 "RPS19A" "40S small subunit ribosomal protein S19.e" 5,1,0,0 "RPS19A" "40S small subunit ribosomal protein S19.e" Validation Accuracy: 10/13 (76.92%) Validation Frequency class '5/1/0/0': 41/838 (4.89%) Evaluation on propertest data (1267 items): ytybl027w 40,3,0,0 "RPL19B" "60S large subunit ribosomal protein L19.e" 5,1,0,0 "RPL19B" "60S large subunit ribosomal protein L19.e" ytybl072c 40,3,0,0 "RPS8A" "ribosomal protein S8.e" 5,1,0,0 "RPS8A" "ribosomal protein S8.e" ytycr031c 40,3,0,0 "RPS14A" "40S Ribosomal protein S14.e" 5,1,0,0 "RPS14A" "40S Ribosomal protein S14.e" ytydl083c 40,3,0,0 "RPS16B" "ribosomal protein S16.e" 5,1,0,0 "RPS16B" "ribosomal protein S16.e" ytydr382w 40,3,0,0 "RPP2B" "60S large subunit acidic ribosomal protein" 5,1,0,0 "RPP2B" "60S large subunit acidic ribosomal protein" ytydr471w 40,3,0,0 "RPL27B" "60S large subunit ribosomal protein" 5,1,0,0 "RPL27B" "60S large subunit ribosomal protein" ytyer074w 40,3,0,0 "RPS24A" "40s small subunit ribosomal protein S24.e" 5,1,0,0 "RPS24A" "40s small subunit ribosomal protein S24.e" ytygl031c 40,3,0,0 "RPL24A" "60S large subunit ribosomal protein L24.e.A" 5,1,0,0 "RPL24A" "60S large subunit ribosomal protein L24.e.A" ytygl123w 40,3,0,0 "RPS2" "40S small subunit ribosomal protein" 5,1,0,0 "RPS2" "40S small subunit ribosomal protein" ytygl135w 40,3,0,0 "RPL1B" "60S large subunit ribosomal protein" 5,1,0,0 "RPL1B" "60S large subunit ribosomal protein" ytygr034w 40,3,0,0 "RPL26B" "60S large subunit ribosomal protein" 5,1,0,0 "RPL26B" "60S large subunit ribosomal protein" ytygr118w 40,3,0,0 "RPS23A" "40S small subunit ribosomal protein S23.e" 5,1,0,0 "RPS23A" "40S small subunit ribosomal protein S23.e" ytyil069c 40,3,0,0 "RPS24B" "40S small subunit ribosomal protein S24.e" 5,1,0,0 "RPS24B" "40S small subunit ribosomal protein S24.e" ytyjl136c 40,3,0,0 "RPS21B" "40S small subunit ribosomal protein S21.e" 5,1,0,0 "RPS21B" "40S small subunit ribosomal protein S21.e" ytylr185w 40,3,0,0 "RPL37A" "ribosomal protein L37.e" 5,1,0,0 "RPL37A" "ribosomal protein L37.e" ytyll045c 40,3,0,0 "RPL8B" "60s large subunit ribosomal protein L7a.e.B" 5,1,0,0 "RPL8B" "60s large subunit ribosomal protein L7a.e.B" ytyml063w 40,3,0,0 "RPS1B" "ribosomal protein S3a.e" 5,1,0,0 "RPS1B" "ribosomal protein S3a.e" ytymr242c 40,3,0,0 "RPL20A" "60s large subunit ribosomal protein" 5,1,0,0 "RPL20A" "60s large subunit ribosomal protein" ytynl061w - 4,1,4,0 "NOP2" "nucleolar protein" 40,10,0,0 "NOP2" "nucleolar protein" ytynl069c 40,3,0,0 "RPL16B" "60S large subunit ribosomal protein" 5,1,0,0 "RPL16B" "60S large subunit ribosomal protein" ytynl119w 5,1,0,0 "null" "weak similarity to M.jannaschii hypothetical protein MJ1257" ytyor063w 40,3,0,0 "RPL3" "60S large subunit ribosomal protein L3.e" 5,1,0,0 "RPL3" "60S large subunit ribosomal protein L3.e" ytyol127w 40,3,0,0 "RPL25" "ribosomal protein L23a.e" 5,1,0,0 "RPL25" "ribosomal protein L23a.e" ytyol040c 40,3,0,0 "RPS15" "40S small subunit ribosomal protein" 5,1,0,0 "RPS15" "40S small subunit ribosomal protein" ytyor206w - 30,99,0,0 "NOC2" "crucial for intranuclear movement of ribosomal precursor particles" 8,1,0,0 "NOC2" "crucial for intranuclear movement of ribosomal precursor particles" ytypl079w 40,3,0,0 "RPL21B" "ribosomal protein L21" 5,1,0,0 "RPL21B" "ribosomal protein L21" ytypl081w 40,3,0,0 "RPS9A" "ribosomal protein S9.e.A" 5,1,0,0 "RPS9A" "ribosomal protein S9.e.A" ytypl143w 40,3,0,0 "RPL33A" "ribosomal protein L35a.e.c16" 5,1,0,0 "RPL33A" "ribosomal protein L35a.e.c16" Propertest Accuracy: 26/28 (92.86%) Propertest Frequency class '5/1/0/0': 67/1267 (5.29%) New (unknown) data (838 items): ytydl152w - 99,0,0,0 "null" "questionable ORF" ytydr417c - 99,0,0,0 "null" "questionable ORF" ytyil064w - 99,0,0,0 "null" "weak similarity to fowlpox virus major core protein" ytyjl188c - 99,0,0,0 "BUD19" "questionable ORF" ytylr062c - 99,0,0,0 "BUD28" "questionable ORF" ytylr339c - 99,0,0,0 "null" "questionable ORF" ytypl142c - 99,0,0,0 "null" "questionable ORF" ytypr044c - 99,0,0,0 "null" "questionable ORF" ------------------ Rule 182: t5_red > 3371 t9_red_bkg > 966 t9_regression <= 0.125 -> class 3/3/0/0 "cell cycle" Evaluation on training data (1599 items): ytybl084c 3,3,1,0 "CDC27" "subunit of anaphase-promoting complex (cyclosome)" 40,10,0,0 "CDC27" "subunit of anaphase-promoting complex (cyclosome)" 6,13,1,0 "CDC27" "subunit of anaphase-promoting complex (cyclosome)" 6,7,0,0 "CDC27" "subunit of anaphase-promoting complex (cyclosome)" ytycl048w 14,4,3,5 "null" "strong similarity to sporulation-specific protein SPS2P" 3,3,2,0 "null" "strong similarity to sporulation-specific protein SPS2P" ytycr002c 1,5,4,0 "CDC10" "cell division control protein" 14,4,3,3 "CDC10" "cell division control protein" 3,3,1,0 "CDC10" "cell division control protein" 3,3,3,0 "CDC10" "cell division control protein" 40,4,0,0 "CDC10" "cell division control protein" ytydl154w 3,3,2,0 "MSH5" "meiosis-specific protein" 40,10,0,0 "MSH5" "meiosis-specific protein" ytydr104c - 14,4,3,5 "SPO71" "protein involved in spore wall formation" ytydr263c - 11,1,0,0 "DIN7" "DNA-damage inducible protein" ytydr285w 3,3,1,0 "ZIP1" "synaptonemal complex protein" 3,3,2,0 "ZIP1" "synaptonemal complex protein" 40,10,3,0 "ZIP1" "synaptonemal complex protein" ytydr446w - 30,1,0,0 "ECM11" "involved in cell wall biogenesis and architecture" ytyer115c - 14,4,3,5 "SPR6" "sporulation-specific protein" ytyer180c 3,3,2,0 "ISC10" "meiosis-specific protein" ytygl180w - 14,4,3,5 "APG1" "essential for autophagocytosis" 40,3,0,0 "APG1" "essential for autophagocytosis" 6,13,4,0 "APG1" "essential for autophagocytosis" 8,13,0,0 "APG1" "essential for autophagocytosis" ytygl251c - 4,99,0,0 "HFM1" "DNA/RNA helicase" 40,10,0,0 "HFM1" "DNA/RNA helicase" ytygr059w - 14,4,3,5 "SPR3" "sporulation-specific septin" 40,4,0,0 "SPR3" "sporulation-specific septin" ytyhl022c 3,1,5,0 "SPO11" "catalytic subunit of the meiotic double strand break transesterase" 3,3,2,0 "SPO11" "catalytic subunit of the meiotic double strand break transesterase" 40,10,0,0 "SPO11" "catalytic subunit of the meiotic double strand break transesterase" ytyhr014w 3,3,2,0 "SPO13" "meiosis-specific protein" ytyhr015w - 4,5,5,0 "MIP6" "similarity to PES4 a PAB-like protein" 5,4,0,0 "MIP6" "similarity to PES4 a PAB-like protein" ytyhr124w 3,3,2,0 "NDT80" "meiosis-specific protein" ytyhr184w 14,4,3,5 "SSP1" "essential for meiosis and spore formation" 3,3,2,0 "SSP1" "essential for meiosis and spore formation" 40,10,0,0 "SSP1" "essential for meiosis and spore formation" ytyjl160c - 11,1,0,0 "null" "strong similarity to PIR1P/HSP150P/PIR3P family" 14,4,3,1 "null" "strong similarity to PIR1P/HSP150P/PIR3P family" ytyjr036c - 4,5,5,0 "HUL4" "hect domain E3 ubiquitin-protein ligase" ytykl042w 3,3,1,0 "SPC42" "spindle pole body component" 40,5,0,0 "SPC42" "spindle pole body component" ytykl189w - 14,4,3,1 "HYM1" "similarity to mouse hypothetical calcium-binding protein and D.melanogaster Mo25 gene" ytylr210w 3,3,1,0 "CLB4" "cyclin, G2/M-specific" ytylr307w - 1,5,1,0 "CDA1" "sporulation-specific chitin deacetylase" 14,4,3,5 "CDA1" "sporulation-specific chitin deacetylase" ytylr308w - 1,5,1,0 "CDA2" "sporulation-specific chitin deacetylase" 14,4,3,5 "CDA2" "sporulation-specific chitin deacetylase" ytylr314c 14,4,3,1 "CDC3" "cell division control protein" 14,4,3,3 "CDC3" "cell division control protein" 3,3,1,0 "CDC3" "cell division control protein" 3,3,3,0 "CDC3" "cell division control protein" 40,4,0,0 "CDC3" "cell division control protein" ytymr017w - 14,4,3,5 "SPO20" "DBF2P interacting protein" 8,7,0,0 "SPO20" "DBF2P interacting protein" ytyol091w 3,3,2,0 "SPO21" "component of the meiotic plaque, required for formation of the prospore membrane" ytyol104c 3,3,2,0 "NDJ1" "meiotic telomere protein" 40,10,3,0 "NDJ1" "meiotic telomere protein" ytyor298w 14,4,3,5 "MUM3" "required for meiosis" 3,3,2,0 "MUM3" "required for meiosis" ytyor339c - 6,13,1,0 "UBC11" "strong similarity to E2 ubiquitin-conjugating enzymes" 6,7,0,0 "UBC11" "strong similarity to E2 ubiquitin-conjugating enzymes" Training Accuracy: 16/31 (51.61%) Training Frequency class '3/3/0/0': 189/1599 (11.82%) Evaluation on validation data (838 items): ytybr045c 14,4,3,5 "GIP1" "GLC7-interacting protein" 3,3,2,0 "GIP1" "GLC7-interacting protein" 4,5,1,4 "GIP1" "GLC7-interacting protein" ytydl114w 3,3,2,0 "null" "weak similarity to Rhizobium nodulation protein nodG" ytydr113c 3,3,1,3 "PDS1" "cell cycle regulator" 40,10,0,0 "PDS1" "cell cycle regulator" ytydr218c 14,4,3,5 "SPR28" "septin-related sporulation protein" 3,3,2,0 "SPR28" "septin-related sporulation protein" 40,4,0,0 "SPR28" "septin-related sporulation protein" ytygl033w 3,3,2,0 "HOP2" "required for pairing of homologous chromosomes" 40,10,3,0 "HOP2" "required for pairing of homologous chromosomes" ytyhr153c 14,4,3,5 "SPO16" "sporulation protein" 3,3,2,0 "SPO16" "sporulation protein" ytyil072w 3,1,5,0 "HOP1" "meiosis-specific protein" 3,3,2,0 "HOP1" "meiosis-specific protein" 30,10,3,0 "HOP1" "meiosis-specific protein" 40,10,0,0 "HOP1" "meiosis-specific protein" ytyil144w - 40,5,0,0 "TID3" "DMC1P interacting protein" ytykl104c - 1,5,1,0 "GFA1" "glucosamine--fructose-6-phosphate transaminase" 14,4,3,3 "GFA1" "glucosamine--fructose-6-phosphate transaminase" 40,3,0,0 "GFA1" "glucosamine--fructose-6-phosphate transaminase" ytylr220w - 13,1,1,99 "CCC1" "involved in calcium regulation" 40,8,0,0 "CCC1" "involved in calcium regulation" ytyll012w - 1,6,4,0 "null" "similarity to triacylglycerol lipases" ytylr343w - 30,1,0,0 "null" "strong similarity to GAS1P and C.albicans pH responsive protein" ytymr001c 3,1,3,0 "CDC5" "involved in regulation of DNA replication" 3,3,1,0 "CDC5" "involved in regulation of DNA replication" 40,10,0,0 "CDC5" "involved in regulation of DNA replication" ytymr125w - 4,5,5,1 "STO1" "large subunit of the nuclear cap-binding protein complex CBC" 40,10,0,0 "STO1" "large subunit of the nuclear cap-binding protein complex CBC" ytymr188c - 5,1,0,0 "null" "weak similarity to bacterial ribosomal protein S17" ytynl225c 14,4,3,5 "CNM67" "involved in cytokinesis" 3,3,1,0 "CNM67" "involved in cytokinesis" 3,3,3,0 "CNM67" "involved in cytokinesis" 40,5,0,0 "CNM67" "involved in cytokinesis" ytynl318c - 1,5,7,0 "HXT14" "hexose transport protein" 40,2,0,0 "HXT14" "hexose transport protein" 67,7,0,0 "HXT14" "hexose transport protein" 8,19,0,0 "HXT14" "hexose transport protein" ytyor177c 3,3,2,0 "MPC54" "meiosis-specific component of the SPB" 40,5,0,0 "MPC54" "meiosis-specific component of the SPB" ytypr007c 14,4,3,5 "SPO69" "protein required for meiosis and sporulation" 3,3,2,0 "SPO69" "protein required for meiosis and sporulation" Validation Accuracy: 11/19 (57.89%) Validation Frequency class '3/3/0/0': 105/838 (12.53%) Evaluation on propertest data (1267 items): ytyar003w 3,3,1,0 "SWD1" "similarity to human RB protein binding protein" 4,5,1,4 "SWD1" "similarity to human RB protein binding protein" ytybr148w - 14,4,3,5 "YSW1" "spore-specific protein" ytydl103c - 30,1,0,0 "QRI1" "UDP-N-acetylglucosamine pyrophosphorylase" ytydl155w 3,3,1,0 "CLB3" "cyclin, G2/M-specific" ytydr371w - 1,5,1,0 "null" "similarity to chitinases" ytydr522c 14,4,3,5 "SPS2" "sporulation-specific protein" 3,3,2,0 "SPS2" "sporulation-specific protein" ytydr523c 14,4,3,5 "SPS1" "ser/thr protein kinase" 3,3,2,0 "SPS1" "ser/thr protein kinase" ytyer179w 3,1,5,0 "DMC1" "meiosis-specific protein" 3,3,1,0 "DMC1" "meiosis-specific protein" 3,3,2,0 "DMC1" "meiosis-specific protein" 40,10,0,0 "DMC1" "meiosis-specific protein" ytyfl003c 3,1,5,0 "MSH4" "meiosis-specific protein" 3,3,2,0 "MSH4" "meiosis-specific protein" 40,10,0,0 "MSH4" "meiosis-specific protein" ytyfr023w - 3,1,5,1 "PES4" "DNA-directed DNA polymerase epsilon suppressor" 40,10,0,0 "PES4" "DNA-directed DNA polymerase epsilon suppressor" ytygl009c - 1,1,1,0 "LEU1" "3-isopropylmalate dehydratase" 40,3,0,0 "LEU1" "3-isopropylmalate dehydratase" ytygl116w 3,3,1,0 "CDC20" "cell division control protein" 40,10,0,0 "CDC20" "cell division control protein" 6,13,0,0 "CDC20" "cell division control protein" ytygr108w 3,3,1,0 "CLB1" "cyclin, G2/M-specific" ytygr225w - 14,4,3,5 "AMA1" "required for sporulation" ytyhr185c - 14,4,3,5 "PFS1" "similarity to S. pombe TEA1P" ytyil099w - 1,5,1,0 "SGA1" "sporulation specific glucan 1,4-alpha-glucosidase" 14,4,3,5 "SGA1" "sporulation specific glucan 1,4-alpha-glucosidase" 40,25,0,0 "SGA1" "sporulation specific glucan 1,4-alpha-glucosidase" ytyil159w - 14,4,3,1 "BNR1" "regulator of budding" 40,4,0,0 "BNR1" "regulator of budding" ytyjl106w 14,4,3,5 "IME2" "ser/thr protein kinase" 3,3,1,0 "IME2" "ser/thr protein kinase" 3,3,2,0 "IME2" "ser/thr protein kinase" ytylr045c - 40,5,0,0 "STU2" "suppressor of a cs tubulin mutation" ytylr263w 3,1,5,0 "RED1" "meiosis-specific protein" 3,3,2,0 "RED1" "meiosis-specific protein" 30,10,3,0 "RED1" "meiosis-specific protein" 40,10,0,0 "RED1" "meiosis-specific protein" ytymr133w 3,3,2,0 "REC114" "meiotic recombination protein" 40,10,0,0 "REC114" "meiotic recombination protein" ytymr272c - 1,6,1,0 "SCS7" "required for hydroxylation of ceramide" 40,8,0,0 "SCS7" "required for hydroxylation of ceramide" ytynl128w - 10,1,99,0 "TEP1" "weak similarity to tensin and to the mammalian tumor suppressor gene product MMAC1/PTEN/TEP1" ytynl196c 14,4,3,5 "SLZ1" "sporulation-specific protein" 3,3,2,0 "SLZ1" "sporulation-specific protein" ytynl204c 14,4,3,5 "SPS18" "sporulation-specific zinc-finger protein" 3,3,2,0 "SPS18" "sporulation-specific zinc-finger protein" 4,5,1,4 "SPS18" "sporulation-specific zinc-finger protein" 40,10,0,0 "SPS18" "sporulation-specific zinc-finger protein" ytyor033c - 1,3,16,0 "EXO1" "exonuclease which interacts with MSH2P" 3,1,5,0 "EXO1" "exonuclease which interacts with MSH2P" ytyor190w - 1,5,1,0 "SPR1" "exo-1,3-beta-glucanase precursor" 14,4,3,5 "SPR1" "exo-1,3-beta-glucanase precursor" 40,1,0,0 "SPR1" "exo-1,3-beta-glucanase precursor" ytyor313c - 14,4,3,5 "SPS4" "sporulation-specific protein" ytyor351c 3,1,5,0 "MEK1" "ser/thr protein kinase" 3,3,2,0 "MEK1" "ser/thr protein kinase" 40,10,0,0 "MEK1" "ser/thr protein kinase" ytypl021w - 30,1,0,0 "ECM23" "similarity to SRD1P" ytypl121c 3,1,5,0 "MEI5" "meiotic protein" 3,3,2,0 "MEI5" "meiotic protein" ytypr120c 3,1,3,0 "CLB5" "cyclin, B-type" 3,3,1,0 "CLB5" "cyclin, B-type" 3,3,2,0 "CLB5" "cyclin, B-type" Propertest Accuracy: 16/32 (50.00%) Propertest Frequency class '3/3/0/0': 151/1267 (11.92%) New (unknown) data (838 items): ytyal018c - 99,0,0,0 "null" "weak similarity to hypothetical proteins YOL047c and YOL048c" ytybr063c - 99,0,0,0 "null" "hypothetical protein" ytybr184w - 99,0,0,0 "null" "hypothetical protein" ytydl186w - 99,0,0,0 "null" "hypothetical protein" ytydl187c - 99,0,0,0 "null" "questionable ORF" ytydl239c - 99,0,0,0 "ADY3" "hypothetical protein" ytydr015c - 99,0,0,0 "null" "hypothetical protein" ytydr042c - 99,0,0,0 "null" "hypothetical protein" ytydr065w - 99,0,0,0 "null" "hypothetical protein" ytydr273w - 99,0,0,0 "null" "weak similarity to YOR042w" ytydr273w - 99,0,0,0 "null" "weak similarity to YOR042w" ytydr326c - 99,0,0,0 "null" "strong similarity to YHR080c, similarity to YFL042c and YLR072w" ytydr374c - 99,0,0,0 "null" "similarity to hypothetical A. thaliana protein BAC F21M12" ytyer085c - 99,0,0,0 "null" "weak similarity to myosins" ytyer106w - 99,0,0,0 "MAM1" "weak similarity to At2g20470 A. thaliana" ytyfr032c - 99,0,0,0 "null" "weak similarity to S.pombe polyadenylate-binding protein, YPR112c and SBP1P" ytygl015c - 99,0,0,0 "null" "hypothetical protein" ytygl138c - 99,0,0,0 "null" "hypothetical protein" ytygl170c - 99,0,0,0 "SPO74" "hypothetical protein" ytygl183c - 99,0,0,0 "MND1" "weak similarity to hypothetical coiled-coil protein S. pombe" ytygr035c - 99,0,0,0 "null" "hypothetical protein" ytygr226c - 99,0,0,0 "null" "hypothetical protein" ytygr273c - 99,0,0,0 "null" "similarity to hypothetical protein YMR295c" ytyjl037w - 99,0,0,0 "null" "strong similarity to hypothetical protein YJL038c" ytyjl038c - 99,0,0,0 "null" "strong similarity to hypothetical protein YJL037w" ytykr005c - 99,0,0,0 "null" "hypothetical protein" ytylr213c - 99,0,0,0 "CRR1" "similarity to CRH1P cell wall protein" ytylr227c - 99,0,0,0 "ADY4" "hypothetical protein" ytyll046c - 98,0,0,0 "RNP1" "ribonucleoprotein" ytylr049c - 99,0,0,0 "null" "hypothetical protein" ytylr445w - 99,0,0,0 "null" "hypothetical protein" ytyml119w - 99,0,0,0 "null" "hypothetical protein" ytynl019c - 99,0,0,0 "null" "strong similarity to YNL033w" ytynl033w - 99,0,0,0 "null" "strong similarity to YNL019c" ytynl155w - 99,0,0,0 "null" "similarity to unnamed ORF; Homo sapiens cDNA" ytynl205c - 99,0,0,0 "null" "questionable ORF" ytyor073w - 99,0,0,0 "null" "hypothetical protein" ytyol132w - 98,0,0,0 "null" "similarity to glycophospholipid-anchored surface glycoprotein GAS1P" ytyol047c - 99,0,0,0 "null" "weak similarity to hypothetical proteins YAL018c and YOL048c" ytyor214c - 99,0,0,0 "null" "hypothetical protein" ytyor255w - 99,0,0,0 "null" "hypothetical protein" ytypl027w - 99,0,0,0 "SMA1" "hypothetical protein" ytypl033c - 99,0,0,0 "null" "weak similarity to YLR426w" ytypl130w - 99,0,0,0 "SPO19" "hypothetical protein - putative glycophosphatidylinositol (GPI)-anchored spore wall protein" ytypr027c - 99,0,0,0 "null" "similarity to YNL019c and YNL033w" ytypr077c - 99,0,0,0 "null" "questionable ORF" ytypr078c - 99,0,0,0 "null" "hypothetical protein" ytypr140w - 98,0,0,0 "null" "similarity to human BTHS gene involved in Barth syndrome" ------------------ Rule 1235: t0Point5_green > 7639 t0_correlation > 0.872 t0Point5_regression > 1.593 t0Point5_g/r_ratio > 1.69 t2_g/r_ratio > 1.19 t7_g/r_ratio > 1.36 t11Point5_g/r_ratio <= 2.36 -> class 40/3/0/0 "cytoplasm" Evaluation on training data (1599 items): ytyal003w 40,3,0,0 "EFB1" "translation elongation factor eEF1beta" 5,4,2,0 "EFB1" "translation elongation factor eEF1beta" ytyal035w 40,3,0,0 "FUN12" "general translation factor eIF2 homolog" 5,4,1,0 "FUN12" "general translation factor eIF2 homolog" ytybl092w 40,3,0,0 "RPL32" "60S large subunit ribosomal protein L32.e" 5,1,0,0 "RPL32" "60S large subunit ribosomal protein L32.e" ytybr084c-a 40,3,0,0 "RPL19A" "60S large subunit ribosomal protein L19.e" 5,1,0,0 "RPL19A" "60S large subunit ribosomal protein L19.e" ytybr181c 40,3,0,0 "RPS6B" "ribosomal protein S6.e" 5,1,0,0 "RPS6B" "ribosomal protein S6.e" ytydl082w 40,3,0,0 "RPL13A" "60S large subunit ribosomal protein L13" 5,1,0,0 "RPL13A" "60S large subunit ribosomal protein L13" ytydl191w 40,3,0,0 "RPL35A" "60S large subunit ribosomal protein" 5,1,0,0 "RPL35A" "60S large subunit ribosomal protein" ytydr023w 40,3,0,0 "SES1" "seryl-tRNA synthetase, cytosolic" 5,10,0,0 "SES1" "seryl-tRNA synthetase, cytosolic" ytydr385w 40,3,0,0 "EFT2" "translation elongation factor eEF2" 5,4,0,0 "EFT2" "translation elongation factor eEF2" ytydr447c 40,3,0,0 "RPS17B" "ribosomal protein S17.e.B" 5,1,0,0 "RPS17B" "ribosomal protein S17.e.B" ytyer036c - 67,50,25,0 "KRE30" "strong similarity to members of the ABC transporter family" ytyer056c-a 40,3,0,0 "RPL34A" "ribosomal protein L34" 5,1,0,0 "RPL34A" "ribosomal protein L34" ytygl189c 40,3,0,0 "RPS26A" "40S small subunit ribosomal protein S26e.c7" 5,1,0,0 "RPS26A" "40S small subunit ribosomal protein S26e.c7" ytygr083c 40,3,0,0 "GCD2" "translation initiation factor eIF2B, 71 kDa (delta) subunit" 5,4,0,0 "GCD2" "translation initiation factor eIF2B, 71 kDa (delta) subunit" ytygr087c 1,5,1,0 "PDC6" "pyruvate decarboxylase 3" 2,16,0,0 "PDC6" "pyruvate decarboxylase 3" 40,3,0,0 "PDC6" "pyruvate decarboxylase 3" ytygr094w 40,16,0,0 "VAS1" "valyl-tRNA synthetase" 40,3,0,0 "VAS1" "valyl-tRNA synthetase" 5,10,0,0 "VAS1" "valyl-tRNA synthetase" ytygr148c 40,3,0,0 "RPL24B" "60S large subunit ribosomal protein L24.e.B" 5,1,0,0 "RPL24B" "60S large subunit ribosomal protein L24.e.B" ytygr214w 14,4,3,1 "RPS0A" "40S ribosomal protein p40 homolog A" 40,3,0,0 "RPS0A" "40S ribosomal protein p40 homolog A" 5,1,0,0 "RPS0A" "40S ribosomal protein p40 homolog A" 6,10,0,0 "RPS0A" "40S ribosomal protein p40 homolog A" ytyhl015w 40,3,0,0 "RPS20" "ribosomal protein" 5,1,0,0 "RPS20" "ribosomal protein" ytyil018w 40,3,0,0 "RPL2B" "60S large subunit ribosomal protein L8.e" 5,1,0,0 "RPL2B" "60S large subunit ribosomal protein L8.e" ytyjl177w 40,3,0,0 "RPL17B" "60s large subunit ribosomal protein L17.e" 5,1,0,0 "RPL17B" "60s large subunit ribosomal protein L17.e" ytyjr123w 40,3,0,0 "RPS5" "ribosomal protein S5.e" 5,1,0,0 "RPS5" "ribosomal protein S5.e" ytykl006w 40,3,0,0 "RPL14A" "ribosomal protein" 5,1,0,0 "RPL14A" "ribosomal protein" ytykl081w 40,3,0,0 "TEF4" "translation elongation factor eEF1, gamma chain" 5,4,0,0 "TEF4" "translation elongation factor eEF1, gamma chain" ytykl172w - 4,1,4,0 "EBP2" "required for pre-rRNA processing and ribosomal subunit assembly" ytylr175w - 14,1,0,0 "CBF5" "putative rRNA pseuduridine synthase" 3,3,1,0 "CBF5" "putative rRNA pseuduridine synthase" 30,4,0,0 "CBF5" "putative rRNA pseuduridine synthase" 4,1,4,0 "CBF5" "putative rRNA pseuduridine synthase" 40,10,0,0 "CBF5" "putative rRNA pseuduridine synthase" ytylr249w 30,1,0,0 "YEF3" "translation elongation factor eEF3" 40,3,0,0 "YEF3" "translation elongation factor eEF3" 5,4,0,0 "YEF3" "translation elongation factor eEF3" ytylr259c - 11,1,0,0 "HSP60" "heat shock protein - chaperone, mitochondrial" 40,16,0,0 "HSP60" "heat shock protein - chaperone, mitochondrial" 6,1,0,0 "HSP60" "heat shock protein - chaperone, mitochondrial" ytylr029c 40,3,0,0 "RPL15A" "60s large subunit ribosomal protein L15.e.c12" 5,1,0,0 "RPL15A" "60s large subunit ribosomal protein L15.e.c12" ytylr048w 40,3,0,0 "RPS0B" "40S ribosomal protein p40 homolog B" 5,1,0,0 "RPS0B" "40S ribosomal protein p40 homolog B" 6,10,0,0 "RPS0B" "40S ribosomal protein p40 homolog B" ytykr097w 1,5,1,0 "PCK1" "phosphoenolpyruvate carboxykinase" 2,1,0,0 "PCK1" "phosphoenolpyruvate carboxykinase" 40,3,0,0 "PCK1" "phosphoenolpyruvate carboxykinase" ytylr340w 40,3,0,0 "RPP0" "acidic ribosomal protein L10.e" 5,1,0,0 "RPP0" "acidic ribosomal protein L10.e" ytylr448w 40,3,0,0 "RPL6B" "60S large subunit ribosomal protein" 5,1,0,0 "RPL6B" "60S large subunit ribosomal protein" ytyml078w - 40,16,0,0 "CPR3" "cyclophilin (peptidylprolyl isomerase), mitochondrial" 6,1,0,0 "CPR3" "cyclophilin (peptidylprolyl isomerase), mitochondrial" ytymr309c 40,3,0,0 "NIP1" "associated with 40s ribosomal subunit" 5,4,0,0 "NIP1" "associated with 40s ribosomal subunit" ytynl067w 40,3,0,0 "RPL9B" "ribosomal protein L9.e.c14" 5,1,0,0 "RPL9B" "ribosomal protein L9.e.c14" ytynl178w 40,3,0,0 "RPS3" "ribosomal protein S3.e" 5,1,0,0 "RPS3" "ribosomal protein S3.e" ytyor168w 40,3,0,0 "GLN4" "glutaminyl-tRNA synthetase" 5,10,0,0 "GLN4" "glutaminyl-tRNA synthetase" ytypr080w 40,3,0,0 "TEF1" "translation elongation factor eEF1 alpha-A chain, cytosolic" 5,4,0,0 "TEF1" "translation elongation factor eEF1 alpha-A chain, cytosolic" Training Accuracy: 34/39 (87.18%) Training Frequency class '40/3/0/0': 236/1599 (14.76%) Evaluation on validation data (838 items): ytybr143c 40,3,0,0 "SUP45" "translational release factor" 5,4,0,0 "SUP45" "translational release factor" ytyer102w 40,3,0,0 "RPS8B" "ribosomal protein S8.e" 5,1,0,0 "RPS8B" "ribosomal protein S8.e" ytygl103w 40,3,0,0 "RPL28" "60S large subunit ribosomal protein L27a.e" 5,1,0,0 "RPL28" "60S large subunit ribosomal protein L27a.e" ytyhr203c 40,3,0,0 "RPS4B" "ribosomal protein S4.e.c8" 5,1,0,0 "RPS4B" "ribosomal protein S4.e.c8" ytyjr145c 40,3,0,0 "RPS4A" "ribosomal protein S4.e.c10" 5,1,0,0 "RPS4A" "ribosomal protein S4.e.c10" ytylr197w - 4,1,4,0 "SIK1" "involved in pre-rRNA processing" 40,10,0,0 "SIK1" "involved in pre-rRNA processing" ytylr075w 3,3,1,0 "RPL10" "60S large subunit ribosomal protein" 40,3,0,0 "RPL10" "60S large subunit ribosomal protein" 5,1,0,0 "RPL10" "60S large subunit ribosomal protein" 6,10,0,0 "RPL10" "60S large subunit ribosomal protein" ytylr333c 40,3,0,0 "RPS25B" "ribosomal protein S25.e.c12" 5,1,0,0 "RPS25B" "ribosomal protein S25.e.c12" ytylr432w - 1,3,1,0 "IMD3" "strong similarity to IMP dehydrogenases, Pur5p and YML056c" ytylr441c 14,4,3,3 "RPS1A" "ribosomal protein S3a.e" 40,3,0,0 "RPS1A" "ribosomal protein S3a.e" 5,1,0,0 "RPS1A" "ribosomal protein S3a.e" ytyml074c - 40,10,0,0 "NPI46" "proline cis-trans isomerase" 6,1,0,0 "NPI46" "proline cis-trans isomerase" ytynl134c 40,3,0,0 "null" "similarity to C.carbonum toxD gene" ytyor370c 1,6,7,0 "MRS6" "geranylgeranyltransferase regulatory subunit" 40,3,0,0 "MRS6" "geranylgeranyltransferase regulatory subunit" 40,7,0,0 "MRS6" "geranylgeranyltransferase regulatory subunit" 40,8,0,0 "MRS6" "geranylgeranyltransferase regulatory subunit" 6,7,0,0 "MRS6" "geranylgeranyltransferase regulatory subunit" ytypl226w - 5,4,0,0 "NEW1" "similarity to translation elongation factor eEF3" 67,50,25,0 "NEW1" "similarity to translation elongation factor eEF3" ytypr102c 40,3,0,0 "RPL11A" "ribosomal protein L11.e" 5,1,0,0 "RPL11A" "ribosomal protein L11.e" Validation Accuracy: 11/15 (73.33%) Validation Frequency class '40/3/0/0': 113/838 (13.48%) Evaluation on propertest data (1267 items): ytybl027w 40,3,0,0 "RPL19B" "60S large subunit ribosomal protein L19.e" 5,1,0,0 "RPL19B" "60S large subunit ribosomal protein L19.e" ytybl072c 40,3,0,0 "RPS8A" "ribosomal protein S8.e" 5,1,0,0 "RPS8A" "ribosomal protein S8.e" ytybr079c 3,3,1,0 "RPG1" "translation initiation factor eIF3 (p110 subunit)" 40,3,0,0 "RPG1" "translation initiation factor eIF3 (p110 subunit)" 40,8,0,0 "RPG1" "translation initiation factor eIF3 (p110 subunit)" 40,9,0,0 "RPG1" "translation initiation factor eIF3 (p110 subunit)" 5,4,0,0 "RPG1" "translation initiation factor eIF3 (p110 subunit)" ytybr121c 40,3,0,0 "GRS1" "glycine--tRNA ligase" 5,10,0,0 "GRS1" "glycine--tRNA ligase" ytydr174w - 40,10,3,0 "HMO1" "Non-histone protein" ytydr382w 40,3,0,0 "RPP2B" "60S large subunit acidic ribosomal protein" 5,1,0,0 "RPP2B" "60S large subunit acidic ribosomal protein" ytydr471w 40,3,0,0 "RPL27B" "60S large subunit ribosomal protein" 5,1,0,0 "RPL27B" "60S large subunit ribosomal protein" ytyer020w - 10,1,5,5 "GPA2" "guanine nucleotide-binding regulatory protein" 13,11,3,1 "GPA2" "guanine nucleotide-binding regulatory protein" 13,11,3,7 "GPA2" "guanine nucleotide-binding regulatory protein" 14,1,0,0 "GPA2" "guanine nucleotide-binding regulatory protein" 14,4,3,1 "GPA2" "guanine nucleotide-binding regulatory protein" 14,4,3,3 "GPA2" "guanine nucleotide-binding regulatory protein" ytygl123w 40,3,0,0 "RPS2" "40S small subunit ribosomal protein" 5,1,0,0 "RPS2" "40S small subunit ribosomal protein" ytygr085c 40,3,0,0 "RPL11B" "ribosomal protein" 5,1,0,0 "RPL11B" "ribosomal protein" ytygr162w 40,3,0,0 "TIF4631" "mRNA cap-binding protein (eIF4F), 150K subunit" 5,4,0,0 "TIF4631" "mRNA cap-binding protein (eIF4F), 150K subunit" ytyhr094c - 1,5,7,0 "HXT1" "low-affinity hexose transporter" 40,2,0,0 "HXT1" "low-affinity hexose transporter" 67,7,0,0 "HXT1" "low-affinity hexose transporter" 8,19,0,0 "HXT1" "low-affinity hexose transporter" ytykl173w - 5,4,0,0 "SNU114" "U5 snRNP-specific protein" ytyll045c 40,3,0,0 "RPL8B" "60s large subunit ribosomal protein L7a.e.B" 5,1,0,0 "RPL8B" "60s large subunit ribosomal protein L7a.e.B" ytylr058c 1,3,1,0 "SHM2" "serine hydroxymethyltransferase, cytoplasmic" 1,6,1,0 "SHM2" "serine hydroxymethyltransferase, cytoplasmic" 40,3,0,0 "SHM2" "serine hydroxymethyltransferase, cytoplasmic" ytylr120c - 40,2,0,0 "YPS1" "aspergillopepsin" 6,7,0,0 "YPS1" "aspergillopepsin" ytykr092c - 4,99,0,0 "SRP40" "suppressor of mutant AC40 of RNA polymerase I and III" 40,10,0,0 "SRP40" "suppressor of mutant AC40 of RNA polymerase I and III" ytylr309c - 30,22,0,0 "IMH1" "involved in vesicular transport" 40,22,0,0 "IMH1" "involved in vesicular transport" 40,25,0,0 "IMH1" "involved in vesicular transport" 6,4,0,0 "IMH1" "involved in vesicular transport" 8,13,0,0 "IMH1" "involved in vesicular transport" 8,7,0,0 "IMH1" "involved in vesicular transport" ytyml063w 40,3,0,0 "RPS1B" "ribosomal protein S3a.e" 5,1,0,0 "RPS1B" "ribosomal protein S3a.e" ytymr083w - 1,5,1,0 "ADH3" "alcohol dehydrogenase III" 40,16,0,0 "ADH3" "alcohol dehydrogenase III" ytynl061w - 4,1,4,0 "NOP2" "nucleolar protein" 40,10,0,0 "NOP2" "nucleolar protein" ytynl069c 40,3,0,0 "RPL16B" "60S large subunit ribosomal protein" 5,1,0,0 "RPL16B" "60S large subunit ribosomal protein" ytynl119w - 5,1,0,0 "null" "weak similarity to M.jannaschii hypothetical protein MJ1257" ytynl192w - 1,5,1,0 "CHS1" "chitin synthase I" 14,4,3,3 "CHS1" "chitin synthase I" 14,4,3,5 "CHS1" "chitin synthase I" 3,3,3,0 "CHS1" "chitin synthase I" 40,2,0,0 "CHS1" "chitin synthase I" ytyor063w 40,3,0,0 "RPL3" "60S large subunit ribosomal protein L3.e" 5,1,0,0 "RPL3" "60S large subunit ribosomal protein L3.e" ytyol040c 40,3,0,0 "RPS15" "40S small subunit ribosomal protein" 5,1,0,0 "RPS15" "40S small subunit ribosomal protein" ytyor206w - 30,99,0,0 "NOC2" "crucial for intranuclear movement of ribosomal precursor particles" 8,1,0,0 "NOC2" "crucial for intranuclear movement of ribosomal precursor particles" ytypl089c - 14,1,3,99 "RLM1" "transcription factor of the MADS box family" 4,5,1,4 "RLM1" "transcription factor of the MADS box family" 40,10,0,0 "RLM1" "transcription factor of the MADS box family" ytypl090c 40,3,0,0 "RPS6A" "ribosomal protein S6.e" 5,1,0,0 "RPS6A" "ribosomal protein S6.e" ytypl220w 40,3,0,0 "RPL1A" "ribosomal protein" 5,1,0,0 "RPL1A" "ribosomal protein" Propertest Accuracy: 17/30 (56.67%) Propertest Frequency class '40/3/0/0': 189/1267 (14.92%) New (unknown) data (838 items): ytydr056c - 99,0,0,0 "null" "hypothetical protein" ytydr154c - 99,0,0,0 "null" "questionable ORF" ytydr417c - 99,0,0,0 "null" "questionable ORF" ytydr511w - 99,0,0,0 "ACN9" "weak similarity to C. elegans protein F25H9.7 and to the human complement 3 precursor" ytyjr014w - 99,0,0,0 "null" "strong similarity to S.pombe hypothetical protein SPBC16C6.05" ytykl082c - 99,0,0,0 "null" "weak similarity to C.elegans hypothetical protein" ytylr198c - 99,0,0,0 "null" "questionable ORF" ytylr076c - 99,0,0,0 "null" "questionable ORF" ytylr339c - 99,0,0,0 "null" "questionable ORF" ytylr350w - 99,0,0,0 "null" "strong similarity to YGR038w" ytymr014w - 99,0,0,0 "BUD22" "weak similarity to S.pombe hypothetical protein SPAC4F10" ytynl308c - 99,0,0,0 "KRI1" "similarity to S.pombe and C.elegans hypothetical proteins" ytyol071w - 99,0,0,0 "null" "similarity to hypothetical S. pombe protein" ytyor239w - 99,0,0,0 "(ABP140)" "questionable ORF" ytyor309c - 99,0,0,0 "null" "questionable ORF" ytypl142c - 99,0,0,0 "null" "questionable ORF" ytypr112c - 98,0,0,0 "MRD1" "similarity to RNA-binding proteins" ------------------ Rule 1324: t0Point5_g/r_ratio > 3.26 t5_g/r_ratio > 2.16 -> class 40/3/0/0 "cytoplasm" Evaluation on training data (1599 items): ytyal003w 40,3,0,0 "EFB1" "translation elongation factor eEF1beta" 5,4,2,0 "EFB1" "translation elongation factor eEF1beta" ytybr031w 40,3,0,0 "RPL4A" "ribosomal protein" 5,1,0,0 "RPL4A" "ribosomal protein" ytybr084c-a 40,3,0,0 "RPL19A" "60S large subunit ribosomal protein L19.e" 5,1,0,0 "RPL19A" "60S large subunit ribosomal protein L19.e" ytybr181c 40,3,0,0 "RPS6B" "ribosomal protein S6.e" 5,1,0,0 "RPS6B" "ribosomal protein S6.e" ytycl064c - 1,1,10,0 "CHA1" "L-serine/L-threonine deaminase" ytycr012w 1,5,1,0 "PGK1" "phosphoglycerate kinase" 2,1,0,0 "PGK1" "phosphoglycerate kinase" 40,3,0,0 "PGK1" "phosphoglycerate kinase" ytydl075w 40,3,0,0 "RPL31A" "60S large subunit ribosomal protein L31.e" 5,1,0,0 "RPL31A" "60S large subunit ribosomal protein L31.e" ytydl082w 40,3,0,0 "RPL13A" "60S large subunit ribosomal protein L13" 5,1,0,0 "RPL13A" "60S large subunit ribosomal protein L13" ytydl191w 40,3,0,0 "RPL35A" "60S large subunit ribosomal protein" 5,1,0,0 "RPL35A" "60S large subunit ribosomal protein" ytydr011w - 1,6,13,0 "SNQ2" "multidrug resistance protein" 11,7,0,0 "SNQ2" "multidrug resistance protein" 13,1,1,1 "SNQ2" "multidrug resistance protein" 40,2,0,0 "SNQ2" "multidrug resistance protein" 67,4,1,2 "SNQ2" "multidrug resistance protein" 67,50,25,0 "SNQ2" "multidrug resistance protein" ytydr025w 40,3,0,0 "RPS11A" "ribosomal protein S11.e" 5,1,0,0 "RPS11A" "ribosomal protein S11.e" ytydr064w 40,3,0,0 "RPS13" "ribosomal protein" 5,1,0,0 "RPS13" "ribosomal protein" ytydr447c 40,3,0,0 "RPS17B" "ribosomal protein S17.e.B" 5,1,0,0 "RPS17B" "ribosomal protein S17.e.B" ytyer056c-a 40,3,0,0 "RPL34A" "ribosomal protein L34" 5,1,0,0 "RPL34A" "ribosomal protein L34" ytyer117w 40,3,0,0 "RPL23B" "ribosomal protein L23.e" 5,1,0,0 "RPL23B" "ribosomal protein L23.e" ytyer131w 40,3,0,0 "RPS26B" "40S small subunit ribosomal protein S26e-c5" 5,1,0,0 "RPS26B" "40S small subunit ribosomal protein S26e-c5" ytyfr053c 1,5,1,0 "HXK1" "hexokinase I" 2,1,0,0 "HXK1" "hexokinase I" 40,3,0,0 "HXK1" "hexokinase I" ytygl030w 40,3,0,0 "RPL30" "60S large subunit ribosomal protein L30.e" 5,1,0,0 "RPL30" "60S large subunit ribosomal protein L30.e" ytygl076c 40,3,0,0 "RPL7A" "60S large subunit ribosomal protein L7.e.A" 5,1,0,0 "RPL7A" "60S large subunit ribosomal protein L7.e.A" ytygl147c 40,3,0,0 "RPL9A" "ribosomal protein L9.e" 5,1,0,0 "RPL9A" "ribosomal protein L9.e" ytygl189c 40,3,0,0 "RPS26A" "40S small subunit ribosomal protein S26e.c7" 5,1,0,0 "RPS26A" "40S small subunit ribosomal protein S26e.c7" ytygr142w - 13,1,0,0 "BTN2" "Gene/protein whose expression is elevated in a btn1 minus/Btn1p lacking yeast strain" ytygr148c 40,3,0,0 "RPL24B" "60S large subunit ribosomal protein L24.e.B" 5,1,0,0 "RPL24B" "60S large subunit ribosomal protein L24.e.B" ytygr214w 14,4,3,1 "RPS0A" "40S ribosomal protein p40 homolog A" 40,3,0,0 "RPS0A" "40S ribosomal protein p40 homolog A" 5,1,0,0 "RPS0A" "40S ribosomal protein p40 homolog A" 6,10,0,0 "RPS0A" "40S ribosomal protein p40 homolog A" ytyhr010w 40,3,0,0 "RPL27A" "60S large subunit ribosomal protein L27.e" 5,1,0,0 "RPL27A" "60S large subunit ribosomal protein L27.e" ytyhr021c 40,3,0,0 "RPS27B" "ribosomal protein S27.e" 5,1,0,0 "RPS27B" "ribosomal protein S27.e" ytyhr139c - 14,4,3,5 "SPS100" "sporulation-specific wall maturation protein" 40,1,0,0 "SPS100" "sporulation-specific wall maturation protein" ytyhr141c 40,3,0,0 "RPL42B" "ribosomal protein L36a.e" 5,1,0,0 "RPL42B" "ribosomal protein L36a.e" ytyhr174w 1,5,1,0 "ENO2" "enolase II (2-phosphoglycerate dehydratase)" 2,1,0,0 "ENO2" "enolase II (2-phosphoglycerate dehydratase)" 40,3,0,0 "ENO2" "enolase II (2-phosphoglycerate dehydratase)" ytyil018w 40,3,0,0 "RPL2B" "60S large subunit ribosomal protein L8.e" 5,1,0,0 "RPL2B" "60S large subunit ribosomal protein L8.e" ytyil052c 40,3,0,0 "RPL34B" "ribosomal protein L34.e" 5,1,0,0 "RPL34B" "ribosomal protein L34.e" ytyil133c 40,3,0,0 "RPL16A" "60S large subunit ribosomal protein" 5,1,0,0 "RPL16A" "60S large subunit ribosomal protein" ytyjl177w 40,3,0,0 "RPL17B" "60s large subunit ribosomal protein L17.e" 5,1,0,0 "RPL17B" "60s large subunit ribosomal protein L17.e" ytyjr123w 40,3,0,0 "RPS5" "ribosomal protein S5.e" 5,1,0,0 "RPS5" "ribosomal protein S5.e" ytykl006w 40,3,0,0 "RPL14A" "ribosomal protein" 5,1,0,0 "RPL14A" "ribosomal protein" ytykl009w - 1,3,16,0 "MRT4" "mRNA turnover 4" 4,5,5,0 "MRT4" "mRNA turnover 4" 5,1,0,0 "MRT4" "mRNA turnover 4" ytykl152c 1,5,1,0 "GPM1" "phosphoglycerate mutase" 2,1,0,0 "GPM1" "phosphoglycerate mutase" 40,3,0,0 "GPM1" "phosphoglycerate mutase" ytylr009w - 5,1,0,0 "null" "similarity to ribosomal protein L24.e.B" ytylr048w 40,3,0,0 "RPS0B" "40S ribosomal protein p40 homolog B" 5,1,0,0 "RPS0B" "40S ribosomal protein p40 homolog B" 6,10,0,0 "RPS0B" "40S ribosomal protein p40 homolog B" ytylr061w - 5,1,0,0 "RPL22A" "ribosomal protein" ytylr134w 1,5,1,0 "PDC5" "pyruvate decarboxylase, isozyme 2" 2,16,0,0 "PDC5" "pyruvate decarboxylase, isozyme 2" 40,3,0,0 "PDC5" "pyruvate decarboxylase, isozyme 2" ytykr080w 1,3,1,0 "MTD1" "methylenetetrahydrofolate dehydrogenase (NAD+)" 40,3,0,0 "MTD1" "methylenetetrahydrofolate dehydrogenase (NAD+)" ytyll026w 11,1,0,0 "HSP104" "heat shock protein" 40,3,0,0 "HSP104" "heat shock protein" 6,99,0,0 "HSP104" "heat shock protein" ytylr344w 40,3,0,0 "RPL26A" "60S large subunit ribosomal protein" 5,1,0,0 "RPL26A" "60S large subunit ribosomal protein" ytylr359w - 1,3,1,0 "ADE13" "adenylosuccinate lyase" ytylr448w 40,3,0,0 "RPL6B" "60S large subunit ribosomal protein" 5,1,0,0 "RPL6B" "60S large subunit ribosomal protein" ytynl178w 40,3,0,0 "RPS3" "ribosomal protein S3.e" 5,1,0,0 "RPS3" "ribosomal protein S3.e" ytynl247w - 5,10,0,0 "null" "cysteinyl-tRNA synthetase" ytynl301c 40,3,0,0 "RPL18B" "60S large subunit ribosomal protein L18.e" 5,1,0,0 "RPL18B" "60S large subunit ribosomal protein L18.e" ytynr038w - 4,1,4,0 "DBP6" "RNA helicase required for 60S ribosomal subunit assembly" 40,10,0,0 "DBP6" "RNA helicase required for 60S ribosomal subunit assembly" 6,10,0,0 "DBP6" "RNA helicase required for 60S ribosomal subunit assembly" ytyol120c 40,3,0,0 "RPL18A" "60S large subunit ribosomal protein S18.e" 5,1,0,0 "RPL18A" "60S large subunit ribosomal protein S18.e" ytyor178c 1,5,4,0 "GAC1" "ser/thr phosphoprotein phosphatase 1, regulatory chain" 2,19,0,0 "GAC1" "ser/thr phosphoprotein phosphatase 1, regulatory chain" 40,3,0,0 "GAC1" "ser/thr phosphoprotein phosphatase 1, regulatory chain" ytyor182c 40,3,0,0 "RPS30B" "ribosomal protein S30" 5,1,0,0 "RPS30B" "ribosomal protein S30" ytyor208w 11,1,0,0 "PTP2" "protein-tyrosine-phosphatase" 13,11,3,13 "PTP2" "protein-tyrosine-phosphatase" 13,11,3,1 "PTP2" "protein-tyrosine-phosphatase" 14,4,3,5 "PTP2" "protein-tyrosine-phosphatase" 3,3,2,0 "PTP2" "protein-tyrosine-phosphatase" 40,3,0,0 "PTP2" "protein-tyrosine-phosphatase" ytyor234c - 5,1,0,0 "RPL33B" "ribosomal protein L35a.e.c15" ytyor293w 40,3,0,0 "RPS10A" "ribosomal protein S10.e" 5,1,0,0 "RPS10A" "ribosomal protein S10.e" ytyor306c - 67,99,0,0 "null" "similarity to human X-linked PEST-containing transporter" ytyor312c 40,3,0,0 "RPL20B" "60S large subunit ribosomal protein" 5,1,0,0 "RPL20B" "60S large subunit ribosomal protein" ytyor344c - 1,5,4,0 "TYE7" "basic helix-loop-helix transcription factor" 4,5,1,4 "TYE7" "basic helix-loop-helix transcription factor" 40,10,0,0 "TYE7" "basic helix-loop-helix transcription factor" ytyor369c 40,3,0,0 "RPS12" "40S small subunit acidic ribosomal protein S12" 5,1,0,0 "RPS12" "40S small subunit acidic ribosomal protein S12" ytypl131w 40,3,0,0 "RPL5" "60S large subunit ribosomal protein L5.e" 5,1,0,0 "RPL5" "60S large subunit ribosomal protein L5.e" Training Accuracy: 48/61 (78.69%) Training Frequency class '40/3/0/0': 236/1599 (14.76%) Evaluation on validation data (838 items): ytyal025c - 3,3,1,0 "MAK16" "nuclear viral propagation protein" 40,10,0,0 "MAK16" "nuclear viral propagation protein" ytyal038w 1,5,1,0 "CDC19" "pyruvate kinase" 2,1,0,0 "CDC19" "pyruvate kinase" 40,3,0,0 "CDC19" "pyruvate kinase" ytyal040c 11,1,0,0 "CLN3" "cyclin, G1/S-specific" 14,1,0,0 "CLN3" "cyclin, G1/S-specific" 14,4,3,1 "CLN3" "cyclin, G1/S-specific" 3,1,3,0 "CLN3" "cyclin, G1/S-specific" 3,3,1,0 "CLN3" "cyclin, G1/S-specific" 40,3,0,0 "CLN3" "cyclin, G1/S-specific" ytybr182c - 4,5,1,4 "SMP1" "MADS-box transcription factor" 40,10,0,0 "SMP1" "MADS-box transcription factor" ytycr057c 14,4,3,1 "PWP2" "periodic tryptophan protein" 3,3,3,0 "PWP2" "periodic tryptophan protein" 40,3,0,0 "PWP2" "periodic tryptophan protein" ytydl021w - 1,5,1,0 "GPM2" "phosphoglycerate mutase" 2,1,0,0 "GPM2" "phosphoglycerate mutase" ytydl130w 40,3,0,0 "RPP1B" "60S large subunit acidic ribosomal protein L44prime" 5,1,0,0 "RPP1B" "60S large subunit acidic ribosomal protein L44prime" ytydl136w 40,3,0,0 "RPL35B" "60S large subunit ribosomal protein" 5,1,0,0 "RPL35B" "60S large subunit ribosomal protein" ytydr012w 40,3,0,0 "RPL4B" "ribosomal protein L4.e.B" 5,1,0,0 "RPL4B" "ribosomal protein L4.e.B" ytyel054c 40,3,0,0 "RPL12A" "60S large subunit ribosomal protein L12.e" 5,1,0,0 "RPL12A" "60S large subunit ribosomal protein L12.e" ytyfr055w - 1,1,1,0 "null" "strong similarity to beta-cystathionases" ytygl055w - 1,6,1,0 "OLE1" "stearoyl-CoA desaturase" 40,7,0,0 "OLE1" "stearoyl-CoA desaturase" ytygr192c 1,5,1,0 "TDH3" "glyceraldehyde-3-phosphate dehydrogenase 3" 2,1,0,0 "TDH3" "glyceraldehyde-3-phosphate dehydrogenase 3" 40,3,0,0 "TDH3" "glyceraldehyde-3-phosphate dehydrogenase 3" ytyhr203c 40,3,0,0 "RPS4B" "ribosomal protein S4.e.c8" 5,1,0,0 "RPS4B" "ribosomal protein S4.e.c8" ytyjl189w 40,3,0,0 "RPL39" "60S large subunit ribosomal protein L39.e" 5,1,0,0 "RPL39" "60S large subunit ribosomal protein L39.e" ytyjr145c 40,3,0,0 "RPS4A" "ribosomal protein S4.e.c10" 5,1,0,0 "RPS4A" "ribosomal protein S4.e.c10" ytykl198c - 13,11,3,1 "PTK1" "polyamine transport enhancing protein" 8,99,0,0 "PTK1" "polyamine transport enhancing protein" ytylr197w - 4,1,4,0 "SIK1" "involved in pre-rRNA processing" 40,10,0,0 "SIK1" "involved in pre-rRNA processing" ytylr044c 1,5,1,0 "PDC1" "pyruvate decarboxylase, isozyme 1" 2,13,0,0 "PDC1" "pyruvate decarboxylase, isozyme 1" 2,16,0,0 "PDC1" "pyruvate decarboxylase, isozyme 1" 40,3,0,0 "PDC1" "pyruvate decarboxylase, isozyme 1" ytylr075w 3,3,1,0 "RPL10" "60S large subunit ribosomal protein" 40,3,0,0 "RPL10" "60S large subunit ribosomal protein" 5,1,0,0 "RPL10" "60S large subunit ribosomal protein" 6,10,0,0 "RPL10" "60S large subunit ribosomal protein" ytylr136c - 4,3,6,0 "TIS11" "tRNA-specific adenosine deaminase 3" ytyll011w - 4,1,4,0 "SOF1" "involved in 18S pre-rRNA production" 40,10,0,0 "SOF1" "involved in 18S pre-rRNA production" ytylr325c 40,3,0,0 "RPL38" "60S large subunit ribosomal protein" 5,1,0,0 "RPL38" "60S large subunit ribosomal protein" ytylr388w 40,3,0,0 "RPS29A" "ribosomal protein S29.e.A" 5,1,0,0 "RPS29A" "ribosomal protein S29.e.A" ytylr441c 14,4,3,3 "RPS1A" "ribosomal protein S3a.e" 40,3,0,0 "RPS1A" "ribosomal protein S3a.e" 5,1,0,0 "RPS1A" "ribosomal protein S3a.e" ytynl096c 40,3,0,0 "RPS7B" "strong similarity to ribosomal protein S7" 5,1,0,0 "RPS7B" "strong similarity to ribosomal protein S7" ytynl160w - 11,1,0,0 "YGP1" "secreted glycoprotein" 40,27,0,0 "YGP1" "secreted glycoprotein" ytynl162w 40,3,0,0 "RPL42A" "ribosomal protein L36a.e" 5,1,0,0 "RPL42A" "ribosomal protein L36a.e" ytynl302c 40,3,0,0 "RPS19B" "40S small subunit ribosomal protein S19.e" 5,1,0,0 "RPS19B" "40S small subunit ribosomal protein S19.e" ytyol010w - 4,99,0,0 "RCL1" "similarity to human RNA 3'-terminal phosphate cyclase" ytyol016c 10,1,99,0 "CMK2" "Ca2+/calmodulin-dependent ser/thr protein kinase, type II" 40,3,0,0 "CMK2" "Ca2+/calmodulin-dependent ser/thr protein kinase, type II" ytyor096w 40,3,0,0 "RPS7A" "ribosomal protein" 5,1,0,0 "RPS7A" "ribosomal protein" ytyol121c 40,3,0,0 "RPS19A" "40S small subunit ribosomal protein S19.e" 5,1,0,0 "RPS19A" "40S small subunit ribosomal protein S19.e" ytyor153w - 1,6,13,0 "PDR5" "pleiotropic drug resistance protein" 11,7,0,0 "PDR5" "pleiotropic drug resistance protein" 13,1,1,1 "PDR5" "pleiotropic drug resistance protein" 40,2,0,0 "PDR5" "pleiotropic drug resistance protein" 67,4,1,2 "PDR5" "pleiotropic drug resistance protein" 67,50,25,0 "PDR5" "pleiotropic drug resistance protein" ytyor209c - 1,7,1,0 "NPT1" "nicotinate phosphoribosyltransferase" Validation Accuracy: 22/35 (62.86%) Validation Frequency class '40/3/0/0': 113/838 (13.48%) Evaluation on propertest data (1267 items): ytybl027w 40,3,0,0 "RPL19B" "60S large subunit ribosomal protein L19.e" 5,1,0,0 "RPL19B" "60S large subunit ribosomal protein L19.e" ytybl054w - 4,5,1,4 "null" "weak similarity to transforming protein (B-myb)" 40,10,0,0 "null" "weak similarity to transforming protein (B-myb)" ytybl072c 40,3,0,0 "RPS8A" "ribosomal protein S8.e" 5,1,0,0 "RPS8A" "ribosomal protein S8.e" ytybr072w 11,1,0,0 "HSP26" "heat shock protein" 40,10,0,0 "HSP26" "heat shock protein" 40,3,0,0 "HSP26" "heat shock protein" ytybr079c 3,3,1,0 "RPG1" "translation initiation factor eIF3 (p110 subunit)" 40,3,0,0 "RPG1" "translation initiation factor eIF3 (p110 subunit)" 40,8,0,0 "RPG1" "translation initiation factor eIF3 (p110 subunit)" 40,9,0,0 "RPG1" "translation initiation factor eIF3 (p110 subunit)" 5,4,0,0 "RPG1" "translation initiation factor eIF3 (p110 subunit)" ytycr031c 40,3,0,0 "RPS14A" "40S Ribosomal protein S14.e" 5,1,0,0 "RPS14A" "40S Ribosomal protein S14.e" ytydl083c 40,3,0,0 "RPS16B" "ribosomal protein S16.e" 5,1,0,0 "RPS16B" "ribosomal protein S16.e" ytydr043c - 1,5,4,0 "NRG1" "transcriptional repressor for glucose repression of STA1 gene expression" 4,5,1,4 "NRG1" "transcriptional repressor for glucose repression of STA1 gene expression" ytydr050c 1,5,1,0 "TPI1" "triose-phosphate isomerase" 2,1,0,0 "TPI1" "triose-phosphate isomerase" 40,3,0,0 "TPI1" "triose-phosphate isomerase" ytydr184c - 13,1,1,0 "ATC1" "binds Aip3p" 30,4,0,0 "ATC1" "binds Aip3p" ytydr382w 40,3,0,0 "RPP2B" "60S large subunit acidic ribosomal protein" 5,1,0,0 "RPP2B" "60S large subunit acidic ribosomal protein" ytydr418w 40,3,0,0 "RPL12B" "60S large subunit ribosomal protein L12.e" 5,1,0,0 "RPL12B" "60S large subunit ribosomal protein L12.e" ytydr471w 40,3,0,0 "RPL27B" "60S large subunit ribosomal protein" 5,1,0,0 "RPL27B" "60S large subunit ribosomal protein" ytyer006w - 8,16,0,0 "null" "similarity to P.polycephalum myosin-related protein mlpA" ytyer074w 40,3,0,0 "RPS24A" "40s small subunit ribosomal protein S24.e" 5,1,0,0 "RPS24A" "40s small subunit ribosomal protein S24.e" ytygl031c 40,3,0,0 "RPL24A" "60S large subunit ribosomal protein L24.e.A" 5,1,0,0 "RPL24A" "60S large subunit ribosomal protein L24.e.A" ytygl123w 40,3,0,0 "RPS2" "40S small subunit ribosomal protein" 5,1,0,0 "RPS2" "40S small subunit ribosomal protein" ytygl135w 40,3,0,0 "RPL1B" "60S large subunit ribosomal protein" 5,1,0,0 "RPL1B" "60S large subunit ribosomal protein" ytygl253w 1,5,1,0 "HXK2" "hexokinase II" 1,5,4,0 "HXK2" "hexokinase II" 2,1,0,0 "HXK2" "hexokinase II" 40,10,0,0 "HXK2" "hexokinase II" 40,3,0,0 "HXK2" "hexokinase II" ytygr034w 40,3,0,0 "RPL26B" "60S large subunit ribosomal protein" 5,1,0,0 "RPL26B" "60S large subunit ribosomal protein" ytygr118w 40,3,0,0 "RPS23A" "40S small subunit ribosomal protein S23.e" 5,1,0,0 "RPS23A" "40S small subunit ribosomal protein S23.e" ytyhl047c - 11,7,0,0 "TAF1" "siderophore transporter for triacetylfusarinine C" 67,28,0,0 "TAF1" "siderophore transporter for triacetylfusarinine C" ytyil056w - 67,99,0,0 "null" "similarity to YER064c" ytyil069c 40,3,0,0 "RPS24B" "40S small subunit ribosomal protein S24.e" 5,1,0,0 "RPS24B" "40S small subunit ribosomal protein S24.e" ytyjl052w 1,5,1,0 "TDH1" "glyceraldehyde-3-phosphate dehydrogenase 1" 2,1,0,0 "TDH1" "glyceraldehyde-3-phosphate dehydrogenase 1" 40,3,0,0 "TDH1" "glyceraldehyde-3-phosphate dehydrogenase 1" ytyjl136c 40,3,0,0 "RPS21B" "40S small subunit ribosomal protein S21.e" 5,1,0,0 "RPS21B" "40S small subunit ribosomal protein S21.e" ytyjl165c - 11,1,0,0 "HAL5" "ser/thr protein kinase" 30,1,0,0 "HAL5" "ser/thr protein kinase" ytyjr009c 1,5,1,0 "TDH2" "glyceraldehyde-3-phosphate dehydrogenase 2" 2,1,0,0 "TDH2" "glyceraldehyde-3-phosphate dehydrogenase 2" 40,3,0,0 "TDH2" "glyceraldehyde-3-phosphate dehydrogenase 2" ytykl060c 1,5,1,0 "FBA1" "fructose-bisphosphate aldolase" 2,1,0,0 "FBA1" "fructose-bisphosphate aldolase" 40,3,0,0 "FBA1" "fructose-bisphosphate aldolase" ytykr016w - 2,13,0,0 "null" "weak similarity to mysoin heavy chain proteins" ytylr185w 40,3,0,0 "RPL37A" "ribosomal protein L37.e" 5,1,0,0 "RPL37A" "ribosomal protein L37.e" ytyll045c 40,3,0,0 "RPL8B" "60s large subunit ribosomal protein L7a.e.B" 5,1,0,0 "RPL8B" "60s large subunit ribosomal protein L7a.e.B" ytylr129w - 3,3,1,0 "DIP2" "DOM34P-interacting protein" 3,3,2,0 "DIP2" "DOM34P-interacting protein" ytyml063w 40,3,0,0 "RPS1B" "ribosomal protein S3a.e" 5,1,0,0 "RPS1B" "ribosomal protein S3a.e" ytymr052w - 13,11,3,7 "FAR3" "involved in pheromone-mediated cell cycle arrest" 14,4,3,3 "FAR3" "involved in pheromone-mediated cell cycle arrest" 3,3,1,0 "FAR3" "involved in pheromone-mediated cell cycle arrest" ytymr217w - 1,3,1,0 "GUA1" "GMP synthase (glutamine-hydrolyzing)" ytymr242c 40,3,0,0 "RPL20A" "60s large subunit ribosomal protein" 5,1,0,0 "RPL20A" "60s large subunit ribosomal protein" ytynl061w - 4,1,4,0 "NOP2" "nucleolar protein" 40,10,0,0 "NOP2" "nucleolar protein" ytynl069c 40,3,0,0 "RPL16B" "60S large subunit ribosomal protein" 5,1,0,0 "RPL16B" "60S large subunit ribosomal protein" ytynl119w - 5,1,0,0 "null" "weak similarity to M.jannaschii hypothetical protein MJ1257" ytynl192w - 1,5,1,0 "CHS1" "chitin synthase I" 14,4,3,3 "CHS1" "chitin synthase I" 14,4,3,5 "CHS1" "chitin synthase I" 3,3,3,0 "CHS1" "chitin synthase I" 40,2,0,0 "CHS1" "chitin synthase I" ytyor063w 40,3,0,0 "RPL3" "60S large subunit ribosomal protein L3.e" 5,1,0,0 "RPL3" "60S large subunit ribosomal protein L3.e" ytyol127w 40,3,0,0 "RPL25" "ribosomal protein L23a.e" 5,1,0,0 "RPL25" "ribosomal protein L23a.e" ytyol151w - 1,7,1,0 "GRE2" "similarity to plant dihydroflavonol-4-reductases" ytyol158c - 11,7,0,0 "ENB1" "a gene of the major facilitator superfamily encodes a transporter for enterobactin" 67,28,0,0 "ENB1" "a gene of the major facilitator superfamily encodes a transporter for enterobactin" ytyol040c 40,3,0,0 "RPS15" "40S small subunit ribosomal protein" 5,1,0,0 "RPS15" "40S small subunit ribosomal protein" ytyol059w - 1,5,1,0 "GPD2" "glycerol-3-phosphate dehydrogenase (NAD+), mitochondrial" 40,16,0,0 "GPD2" "glycerol-3-phosphate dehydrogenase (NAD+), mitochondrial" ytyor206w - 30,99,0,0 "NOC2" "crucial for intranuclear movement of ribosomal precursor particles" 8,1,0,0 "NOC2" "crucial for intranuclear movement of ribosomal precursor particles" ytyor207c - 4,1,1,0 "RET1" "DNA-directed RNA polymerase III, 130 KD subunit" 4,3,1,0 "RET1" "DNA-directed RNA polymerase III, 130 KD subunit" 40,10,0,0 "RET1" "DNA-directed RNA polymerase III, 130 KD subunit" ytyor272w - 3,3,1,0 "YTM1" "microtubule-interacting protein" 40,4,0,0 "YTM1" "microtubule-interacting protein" ytyor299w - 1,5,1,0 "BUD7" "involved in bud-site selection" ytypl079w 40,3,0,0 "RPL21B" "ribosomal protein L21" 5,1,0,0 "RPL21B" "ribosomal protein L21" ytypl081w 40,3,0,0 "RPS9A" "ribosomal protein S9.e.A" 5,1,0,0 "RPS9A" "ribosomal protein S9.e.A" ytypl090c 40,3,0,0 "RPS6A" "ribosomal protein S6.e" 5,1,0,0 "RPS6A" "ribosomal protein S6.e" ytypl143w 40,3,0,0 "RPL33A" "ribosomal protein L35a.e.c16" 5,1,0,0 "RPL33A" "ribosomal protein L35a.e.c16" ytypr074c 1,1,1,0 "TKL1" "transketolase 1" 1,5,1,0 "TKL1" "transketolase 1" 2,7,0,0 "TKL1" "transketolase 1" 40,3,0,0 "TKL1" "transketolase 1" Propertest Accuracy: 35/56 (62.50%) Propertest Frequency class '40/3/0/0': 189/1267 (14.92%) New (unknown) data (838 items): ytyal036c - 99,0,0,0 "FUN11" "strong similarity to GTP-binding proteins" ytybr005w - 99,0,0,0 "null" "strong similarity to hypothetical protein YDR003w" ytycr007c - 99,0,0,0 "null" "strong similarity to subtelomeric encoded proteins" ytycr013c - 99,0,0,0 "null" "similarity to M.leprae B1496_F1_41 protein" ytydl152w - 99,0,0,0 "null" "questionable ORF" ytydr157w - 99,0,0,0 "null" "questionable ORF" ytydr398w - 99,0,0,0 "null" "similarity to human KIAA0007 gene" ytydr417c - 99,0,0,0 "null" "questionable ORF" ytyer064c - 99,0,0,0 "null" "similarity to hypothetical protein YIL056w" ytyer067w - 99,0,0,0 "null" "strong similarity to hypothetical protein YIL057c" ytyer126c - 99,0,0,0 "KRE32" "weak similarity to E.coli colicin N" ytyfr056c - 99,0,0,0 "null" "questionable ORF" ytygr052w - 99,0,0,0 "null" "similarity to ser/thr protein kinases" ytygr128c - 99,0,0,0 "null" "hypothetical protein" ytygr187c - 99,0,0,0 "HGH1" "weak similarity to human HMG1P and HMG2P" ytygr211w - 99,0,0,0 "ZPR1" "similarity to M.musculus zinc finger protein ZPR1" ytyhr049w - 99,0,0,0 "null" "similarity to S.pombe dihydrofolate reductase and YOR280c" ytyil064w - 99,0,0,0 "null" "weak similarity to fowlpox virus major core protein" ytyil122w - 99,0,0,0 "null" "weak similarity to transcription adaptor protein p300 - human" ytyjl108c - 99,0,0,0 "PRM10" "strong similarity to hypothetical S. pombe protein" ytyjl188c - 99,0,0,0 "BUD19" "questionable ORF" ytykl153w - 99,0,0,0 "null" "questionable ORF" ytylr186w - 99,0,0,0 "EMG1" "strong similarity to S.pombe hypothetical protein C18G6.07C" ytylr194c - 99,0,0,0 "null" "hypothetical protein" ytylr196w - 99,0,0,0 "PWP1" "similarity to human IEF SSP 9502 protein" ytylr222c - 99,0,0,0 "CST29" "similarity to DIP2P" ytylr062c - 99,0,0,0 "BUD28" "questionable ORF" ytylr076c - 99,0,0,0 "null" "questionable ORF" ytylr339c - 99,0,0,0 "null" "questionable ORF" ytyml038c - 99,0,0,0 "YMD8" "similarity to vanadate resistance protein GOG5P, member of the triose phosphate translocater family of membrane transporters" ytymr093w - 99,0,0,0 "null" "weak similarity to PWP2P" ytymr316w - 99,0,0,0 "DIA1" "similarity to YOR385w and YNL165w" ytyor049c - 99,0,0,0 "null" "similarity to YER185w, RTA1P" ytyol150c - 99,0,0,0 "null" "questionable ORF" ytyor343c - 99,0,0,0 "null" "hypothetical protein" ytyor385w - 99,0,0,0 "null" "strong similarity to hypothetical protein YMR316w" ytyor389w - 99,0,0,0 "null" "strong similarity to putative pseudogenes YPL277c and YPL278c" ytypl142c - 99,0,0,0 "null" "questionable ORF" ytypl277c - 99,0,0,0 "null" "strong similarity to hypothetical protein YOR389w/putative pseudogene" ytypl278c - 99,0,0,0 "null" "strong similarity to hypothetical protein YOR389w/putative pseudogene" ytypr030w - 99,0,0,0 "CSR2" "similarity to YBL101c" ytypr044c - 99,0,0,0 "null" "questionable ORF" ytypr136c - 99,0,0,0 "FYV15" "questionable ORF" ------------------