Aberystwyth University Aberystwyth University
Computational Biology Group.
Department of Computer Science, Aberystwyth SY23 3DB, Wales, UK.
 

PROF - Secondary Structure Prediction System

Submit a single amino acid sequence for secondary structure prediction:
Please specify your email address
Please check twice, as we get a lot of predictions coming back,
due to spelling mistakes!: 		Select your desired output format:
Please enter your sequence in FASTA format (first line starting with > and the title reference, followed by multiple lines of single letter amino acid sequence (NO ALIGNMENTS OR DNA PLEASE!!)):

In the event that Prof cannot make a prediction for your protein, the DSC program will be used to make a prediction instead. An email will be returned even if no prediction can be made.
The Prof program can now be downloaded at this address: http://www.aber.ac.uk/compsci/Research/bio/dss/prof/. Please read the readme file first!
The CASP output format is a standard format, described at http://predictioncenter.llnl.gov/casp5/doc/casp5-format.html. H=alpha helix, E=beta strand, C=coil. We give a prediction and a confidence value between 0 and 1 for each position in the amino acid sequence.

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