CLUSTAL 2.0.11 multiple sequence alignment HTL_5684-seq-1_140211_75-5_2F_ -----------------------------------TTTTTATAGGTGTAC HTL_5684-seq-1_140211_77-5_1F_ -----GGTTCCATCCTGATAATTTTTTTTATCTCTCTTATATAGGTGTAC expected AACAATATTCCAAACACTCAGTCCTTTTCCTTCTTATATTATAGGTGTAC * *********** HTL_5684-seq-1_140211_75-5_2F_ GTATTATAGAAAAATTTCAATGATTACTTTTTCTTTCTTTTTCCTTGTAC HTL_5684-seq-1_140211_77-5_1F_ GTATTATAGAAAAATTTCAATGATTACTTTTTCTTTCTTTTTCCTTGTAC expected GTATTATAGAAAAATTTCAATGATTACTTTTTCTTTCTTTTTCCTTGTAC ************************************************** HTL_5684-seq-1_140211_75-5_2F_ CAGCACATGGCCGAGCTTGAATGTTAAACCCTTCGAGAGAATCACACCAT HTL_5684-seq-1_140211_77-5_1F_ CAGCACATGGCCGAGCTTGAATGTTAAACCCTTCGAGAGAATCACACCAT expected CAGCACATGGCCGAGCTTGAATGTTAAACCCTTCGAGAGAATCACACCAT ************************************************** HTL_5684-seq-1_140211_75-5_2F_ TCAAGTATAAAGCCAATAAAGAATATAACTCCTAAAAGGCTAATTGAAAC HTL_5684-seq-1_140211_77-5_1F_ TCAAGTATAAAGCCAATAAAGAATATAACTCCTAAAAGGCTAATTGAAAC expected TCAAGTATAAAGCCAATAAAGAATATAACTCCTAAAAGGCTAATTGAAAC ************************************************** HTL_5684-seq-1_140211_75-5_2F_ CCTGTGATTTTTGATAAGCGATAGAAAACTGAGAAGGGAAAGTTAACACG HTL_5684-seq-1_140211_77-5_1F_ CCTGTGATTTTTGATAAGCGATAGAAAACTGAGAAGGGAAAGTTAACACG expected CCTGTGATTTTTGATAAGCGATAGAAAACTGAGAAGGGAAAGTTAACACG ************************************************** HTL_5684-seq-1_140211_75-5_2F_ AAAGCTAGCAAGTAATGATGGTGCGGTCTACATCGAGTAAAAAGATAATA HTL_5684-seq-1_140211_77-5_1F_ AAAGCTAGCAAGTAATGATGGTGCGGTCTACATCGAGTAAAAAGATAATA expected AAA-CTAGCAAGTAATGATGGTGCGGTCTACATCGAGTAAAAAGATAATA *** ********************************************** HTL_5684-seq-1_140211_75-5_2F_ TGTGAAGGTGAAGTTAAAGAGTACAAATTGGAGATTTTGAATACTACATT HTL_5684-seq-1_140211_77-5_1F_ TGTGAAGGTGAAGTTAAAGAGTACAAATTGGAGATTTTGAATACTACATT expected TGTGAAGGTGAAGTTAAAGAGTACAAATTGGAGATTTTGAATACTACATT ************************************************** HTL_5684-seq-1_140211_75-5_2F_ TACCTAGTAAATCACGATGAGAATTATATAAGTAAAAGGAAACTGTTTAC HTL_5684-seq-1_140211_77-5_1F_ TACCTAGTAAATCACGATGAGAATTATATAAGTAAAAGGAAACTGTTTAC expected TACCTAGTAAATCACGATGAGAATTATATAAGTAAAAGGAAACTGTTTAC ************************************************** HTL_5684-seq-1_140211_75-5_2F_ AGTTTTTCGAAATCTTCTTCATTATATACGAAGTCGTTACCGCAACGTCT HTL_5684-seq-1_140211_77-5_1F_ AGTTTTTCGAAATCTTCTTCATTATATACGAAGTCGTTACCGCAACGTCT expected AGTTTTTCGAAATCTTCTTCATTATATACGAAGTCGTTACCGCAACGTCT ************************************************** HTL_5684-seq-1_140211_75-5_2F_ CGCTAACCAACTTTTTTTATAATCAAAGTATCTCCATGATTCCTCCTCAG HTL_5684-seq-1_140211_77-5_1F_ CGCTAACCAACTTTTTTTATAATCAAAGTATCTCCATGATTCCTCCTCAG expected CGCTAACCAACTTTTTTTATAATCAAAGTATCTCCATGATTCCTCCTCAG ************************************************** HTL_5684-seq-1_140211_75-5_2F_ ATTTGCCCATTCCTGGTGGTAACTTTTCGATTTCTTTATAATACCAGCAG HTL_5684-seq-1_140211_77-5_1F_ ATTTGCCCATTCCTGGTGGTAACTTTTCGATTTCTTTATAATACCAGCAG expected ATTTGCCCATTCCTGGTGGTAACTTTTCGATTTCTTTATAATACCAGCAG ************************************************** HTL_5684-seq-1_140211_75-5_2F_ CGATCA HTL_5684-seq-1_140211_77-5_1F_ CGATCA expected CGATC- *****