Amanda Clare BA (Oxon), MSc( Edinburgh), PhD

Senior Lecturer

Contact Details

Room Number..........:  E37
Building....................:  Llandinam
Phone.......................:   +44 (0)1970 622429
E-Mail........................:   afc
Home Page...............:   Personal

Research Groups

Teaching Areas

Modules Taught

  • CC39440: Prosiect Hir
  • CS12510: Functional Programming
  • CS24400: Scientific Python
  • CS24420: Scientific Python
  • CS39440: Major Project
  • CSM0120: Programming for Scientists
  • MA25200: Introduction to Numerical Analysis and its applications
  • MA25220: Introduction to Numerical Analysis and its applications
  • MT25200: Cyflwyniad i Ddadansoddiad Rhifiadol a'i gymhwysiadau
  • MT25220: Cyflwyniad i Ddadansoddiad Rhifiadol a'i gymhwysiadau

Publications

Replicating complex agent based models, a formidable taskDonkin, E., Dennis, P., Ustalakov, A., Warren, J. & Clare, A. 2017 In : Environmental Modelling and Software.92, p. 142-151
Measuring scientific impact beyond academia: An assessment of existing impact metrics and proposed improvementsRavenscroft, J. E., Liakata, M., Clare, A. & Duma, D. 2017 In : PLoS One. e0173152
Meta-data analysis of plant trait databases: how are such databases used and how can they be improved?Donkin, E., Warren, J., Dennis, P. & Clare, A. 2016 1 p.
MitiGate; an online meta-analysis database for quantification of mitigation strategies for enteric methane emissionsVeneman, J. B., Saetnan, E., Clare, A. & Newbold, C. 2016 In : Science of the Total Environment.572, p. 1166-1174
Rhetorical Classification of Anchor Text for Citation RecommendationDuma, D., Liakata, M., Clare, A., Ravenscroft, J. & Klein, E. 2016 In : D-Lib Magazine.22, 9/10
Goldilocks: A tool for identifying genomic regions that are ‘just right’Nicholls, S. M., Clare, A. & Randall, J. 2016 In : Bioinformatics.32, 13, p. 2047-20493 p.
A Tool for Multiple Targeted Genome Deletions that Is Precise, Scar-Free, and Suitable for Automation.Aubrey, W., Riley, M., Young, M., King, R. D., Oliver, S. G. & Clare, A. 2015 In : PLoS One.10, 12, 0142494
Automatically Geotagging Articles in the Welsh Newspapers Online CollectionSapstead, S., Daniel, I. & Clare, A. 2015 Research and Development in Intelligent Systems XXXII: Incorporating Applications and Innovations in Intelligent Systems XXIII. Bramer, M. & Petridis, M. (eds.). Springer Nature, p. 367-373 Chapter 28
Laboratory Automation in a Functional Programming LanguageRunciman, C., Clare, A. & Harkness, R. 2014 In : SLAS Technology.19, 6, p. 569-576
Partridge: An effective system for the automatic classification of the types of academic papersRavenscroft, J., Liakata, M. & Clare, A. J. 2013 Research and Development in Intelligent Systems XXX: Incorporating Applications and Innovations in Intelligent Systems XXI Proceedings of AI-2013, The Thirty-third SGAI International Conference on Innovative Techniques and Applications of Artificial Intelligence. Bramer, M. & Petridis, M. (eds.). Springer Nature, p. 351-358
PD5: a general purpose library for primer design softwareRiley, M. C., Aubrey, W., Young, M. & Clare, A. 2013 In : PLoS One.8, 11, p. n/a e80156
AutoLabDB: a substantial open source database schema to support a high-throughput automated laboratorySparkes, A. C. & Clare, A. J. 2012 In : Bioinformatics.28, 10, p. 1390-13978 p.
Exploring the Generation and Integration of Publishable Scientic Facts Using the Concept of Nano-publications.Clare, A., Croset, S., Grabmueller, C., Kafkas, S., Liakata, M., Oellrich, A. & Rebholz-Schuhmann, D. 2011
Constraint-based optimisation tools for semi-automated refinement of genome-scale yeast metabolic modelsPir, P., Dobson, P. D., Smallbone, K., Mendes, P., King, R. D., Lu, C., Oliver, S. G. & Clare, A. 2010
Wiki based management of chemometric research projectsAlsberg, B. & Clare, A. J. 2010 In : Journal of Chemometrics.24, 7-8, p. 408-41710 p.
An Integrated Laboratory Robotic System for Autonomous Discovery of Gene FunctionSparkes, A. C., King, R. D., Aubrey, W., Benway, M., Byrne, E. L., Clare, A. J., Liakata, M., Markham, M., Whelan, K. E., Young, M. & Rowland, J. 2010 In : Journal of The Association for Laboratory Automation.15, 1, p. 33-408 p.
Towards Robot Scientists for autonomous scientific discoverySparkes, A. C., Aubrey, W., Byrne, E. L., Clare, A. J., Khan, M., Liakata, M., Markham, M., Rowland, J., Soldatova, L. N., Whelan, K. E., Young, M. & King, R. D. 2010 In : Automated Experimentation.2, 1, p. 1759-44992741 p.
Letters - Make way for robot scientistsByrne, E. L., Liakata, M., Whelan, K. E., Oliver, S. G., Rowland, J. J., Aubrey, W., Soldatova, L. N., Sparkes, A. C., Young, M., Markham, M., Clare, A. J., Pir, P. & King, R. D. 2009 In : Science.325, 5943, p. p945
The Robot Scientist AdamKing, R. D., Rowland, J. J., Aubrey, W., Liakata, M., Markham, M., Soldatova, L. N., Whelan, K. E., Clare, A. J., Young, M., Sparkes, A. C., Oliver, S. & Pir, P. 2009 In : Computer.42, 8, p. 46-549 p.
The Automation of ScienceKing, R. D., Rowland, J. J., Oliver, S. G., Young, M., Aubrey, W., Byrne, E. L., Liakata, M., Markham, M., Pir, P., Soldatova, L. N., Sparkes, A. C., Whelan, K. E. & Clare, A. J. 2009 In : Science.324, 5923, p. 85-895 p.
The EXACT description of biomedical protocolsSoldatova, L. N., Aubrey, W., King, R. D. & Clare, A. J. 2008 In : Bioinformatics.24, 13, p. i295-i3039 p.
Locational distribution of gene functional classes in Arabidopsis thalianaRiley, M. C., Clare, A. & King, R. D. 2007 In : BMC Bioinformatics.8, 112
Functional bioinformatics for Arabidopsis thalianaClare, A. J., Karwath, A., Ougham, H. J. & King, R. D. 2006 In : Bioinformatics.22, 9, p. 1130-11367 p.
An ontology for a Robot ScientistSoldatova, L., Clare, A., Sparkes, A. & King, R. D. 2006 In : Bioinformatics.22, 14, p. 464-4718 p.
Decision Trees for Hierarchical Multilabel Classification: A Case Study in Functional GenomicsDžeroski, S., Blockeel, H., Clare, A., Leander, S. & Struyf, J. 2006 Knowledge Discovery in Databases: PKDD 2006.Springer Nature, p. 18-2912 p.
Integration of genomic and phenotypic dataClare, A. 2005 Data Analysis and Visualization in Genomics and Proteomics.Wiley, p. 0-470471 p.
Hierarchical Multi-classification with Predictive Clustering Trees in Functional GenomicsClare, A., Džeroski, S., Struyf, J. & Blockeel, H. 2005
The Robot Scientist 'Adam'King, R. D., Whelan, K., Clare, A. & Rowland, J. J. 2005 4 p.Prifysgol Aberystwyth | Aberystwyth University
Scalable Multi-Relational Association MiningClare, A., Williams, H. E. & Lester, N. 2004
Confirmation of Data Mining Based Predictions of Protein FunctionKing, R. D., Wise, P. H. & Clare, A. 2004 In : Bioinformatics.20, 7, p. 1110-11189 p.
Predicting gene function in Saccharomyces cerevisiaeKing, R. D. & Clare, A. 2003 In : Bioinformatics.19, S2, p. 42-49
Data mining the yeast genome in a lazy functional languageClare, A. & King, R. D. 2003
How well do we understand the clusters found in microarray data?Clare, A. & King, R. D. 2002 In : In Silico Biology.2, 4, p. 511-522
Machine learning of functional class from phenotype dataClare, A. & King, R. D. 2002 In : Bioinformatics.18, 1, p. 160-1667 p.
Accurate prediction of protein functional class from sequence in the Mycobacterium tuberculosis and Escherichia coli genomes using data miningKing, R., Karwath, A., Clare, A. & Dehaspe, L. 2000 In : Yeast.17, 4, p. 283-29311 p.