
investigation(data_reuse).
has_representation(data_reuse,'investigation into the reuse of the results of Robot Scientist investigation into automation of science').
text_representation('investigation into the reuse of the results of Robot Scientist investigation into automation of science').
domain_of_study('systems biology').
has_proposition(data_reuse, 'systems biology').
representation(keywords_representation).
keywords_representation('systems biology').
has_object(data_reuse,s_cerevisiae).

has_specified_input(data_reuse,reuse_investigation_into_automation_science).
objective(reuse_investigation_into_automation_science).


has_proposition(data_reuse,data_reuse_hset).
hypotheses_set(data_reuse_hset).

has_proposition(data_reuse_hset,data_reuse_hset_hyp_1_1).
research_hypothesis(data_reuse_hset_hyp_1_1).
has_representation(data_reuse_hset_hyp_1_1,'There is a difference in growth between knockouts and wildtype on rich medium').
text_representation('There is a difference in growth between knockouts and wildtype on rich medium').
has_representation(data_reuse_hset_hyp_1_1,'difference_growth(knockout(X),wt')).
logical_representation('difference_growth(knockout(X),wt')).


has_proposition(data_reuse_hset,data_reuse_hset_hyp_1_2).
research_hypothesis(data_reuse_hset_hyp_1_2).
has_representation(data_reuse_hset_hyp_1_2,'There is a difference in growth between knockouts and wildtype on minimal medium').
text_representation('There is a difference in growth between knockouts and wildtype on minimal medium').
has_representation(data_reuse_hset_hyp_1_2,'difference_growth(knockout(X),wt')).
logical_representation('difference_growth(knockout(X),wt')).

has_proposition(data_reuse_hset,data_reuse_hset_hyp_1_3).
research_hypothesis(data_reuse_hset_hyp_1_3).
has_representation(data_reuse_hset_hyp_1_3,'There is a difference in growth between wildtype on minimal medium and wildtype on minimal medium with the addition of metabolites').
text_representation('There is a difference in growth between wildtype on minimal medium and wildtype on minimal medium with the addition of metabolites').



has_proposition(data_reuse_hset,data_reuse_hset_hyp_2_1).
negative_hypothesis(data_reuse_hset_hyp_2_1).
has_representation(data_reuse_hyp_2_1,'There is no difference in growth between knockouts and wildtype on rich medium').
text_representation('There is no difference in growth between knockouts and wildtype on rich medium').
has_representation(data_reuse_hset_hyp_2_1,'no_difference_growth(knockout,wt')).
logical_representation('no_difference_growth(knockout,wt')). 

has_proposition(data_reuse_hset,data_reuse_hset_hyp_2_2).
negative_hypothesis(data_reuse_hset_hyp_2_2).
has_representation(data_reuse_hyp_2_2,'There is no difference in growth between knockouts and wildtype on minimal medium').
text_representation('There is no difference in growth between knockouts and wildtype on minimal medium').
has_representation(study_on_rich_hset_hyp_2_2,'no_difference_growth(Yeast_strain_knockout,wt').
logical_representation('no_difference_growth(Yeast_strain_knockout,wt'). 

has_proposition(data_reuse_hset,data_reuse_hset_hyp_2_3).
negative_hypothesis(data_reuse_hset_hyp_2_3).
has_representation(data_reuse_hset_hyp_2_3,'There is no difference in growth between wildtype on minimal medium and wildtype on minimal medium with the addition of metabolites').
text_representation('There is no difference in growth between wildtype on minimal medium and wildtype on minimal medium with the addition of metabolites').

has_proposition(data_reuse,data_reuse_result).
result(data_reuse_result).
has_part(data_reuse_result,study_on_rich_result).
has_part(data_reuse_result,study_on_minimal_result).


has_proposition(data_reuse,data_reuse_conclusion_1).
conclusion(data_reuse_conclusion_1).
has_representation(data_reuse_conclusion_1,'the hypothesis hyp_1_1 "There is a difference in growth between knockouts and wildtype on rich medium" has been confirmed').
text_representation('the hypothesis hyp_1_1 "There is a difference in growth between knockouts and wildtype on rich medium" has been confirmed').

has_proposition(data_reuse,data_reuse_conclusion_2).
conclusion(data_reuse_conclusion_2).
has_representation(data_reuse_conclusion_2,'the hypothesis hyp_1_2 "There is a difference in growth between knockouts and wildtype on minimal medium" has been confirmed').
text_representation('the hypothesis hyp_1_2 "There is a difference in growth between knockouts and wildtype on minimal medium" has been confirmed').

has_proposition(data_reuse,data_reuse_conclusion_3).
conclusion(data_reuse_conclusion_3).
has_representation(data_reuse_conclusion_3,'the hypothesis hyp_1_3 "There is a difference in growth between wildtype on minimal medium and wildtype on minimal medium with the addition of metabolites" has been confirmed').
text_representation('the hypothesis hyp_1_3 "There is a difference in growth between wildtype on minimal medium and wildtype on minimal medium with the addition of metabolites" has been confirmed').





%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
study(study_on_rich).
has_part(data_reuse,study_on_rich).
has_participant(study_on_rich,rich_medium).
has_participant(study_on_rich,wt).
has_participant(study_on_rich,knockout(X)).


has_specified_input(study_on_rich,data_reuse_hset_hyp_1_1).
has_specified_input(study_on_rich,data_reuse_hset_hyp_2_1).


has_proposition(study_on_rich,study_on_rich_result).
result(study_on_rich_result).
has_part(study_on_rich_result,study_on_rich_growthrate_result).
has_part(study_on_rich_result,study_on_rich_globalmaxod_result).


has_part(study_on_rich,study_on_rich_growthrate).
study(study_on_rich_growthrate).
has_representation(study_on_rich_growthrate,'study of the differences in the growth of knockouts and WT in rich medium').
text_representation('study of differences in the growth rate of knockout and wildtype on rich medium').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_hset).
hypotheses_set(study_on_rich_growthrate_hset).
has_proposition(study_on_rich_growthrate_hset,study_on_rich_growthrate_hset_hyp_1_1).
research_hypothesis(study_on_rich_growthrate_hset_hyp_1_1).
has_representation(study_on_rich_growthrate_hset_hyp_1_1,'There is a difference between knockout growth rate and wildtype growth rate in rich medium').
text_representation('There is a difference between knockout growth rate and wildtype growth rate in rich medium').
negative_hypothesis(study_on_rich_growthrate_hset_hyp_1_2).
has_representation(study_on_rich_growthrate_hset_hyp_1_2,'There is no difference between knockout growth rate and wildtype growth rate in rich medium').
text_representation('There is no difference between knockout growth rate and wildtype growth rate in rich medium').
	

has_part(study_on_rich,study_on_rich_globalmaxod).
study(study_on_rich_globalmaxod).
has_representation(study_on_rich_globalmaxod,'study of differences in the global max od of knockout and wildtype on rich medium').
text_representation('study of differences in the global max od of knockout and wildtype on rich medium').
has_proposition(study_on_rich_globalmaxod,study_on_rich_globalmaxod_hset).
hypotheses_set(study_on_rich_globalmaxod_hset).
has_proposition(study_on_rich_globalmaxod_hset,study_on_rich_globalmaxod_hset_hyp_1_1).
research_hypothesis(study_on_rich_globalmaxod_hset_hyp_1_1).
has_representation(study_on_rich_globalmaxod_hset_hyp_1_1,'There is a difference between knockout global max od and wildtype global max od in rich medium').
text_representation('There is a difference between knockout global max od and wildtype global max od in rich medium').
negative_hypothesis(study_on_rich_globalmaxod_hset_hyp_1_2).
has_representation(study_on_rich_globalmaxod_hset_hyp_1_2,'There is no difference between knockout global max od and wildtype global max od in rich medium').
text_representation('There is no difference between knockout global max od and wildtype global max od in rich medium').

has_part(study_on_rich_growthrate,trial_on_rich_growthrate_yhr163w).
trial(trial_on_rich_growthrate_yhr163w).
has_agent(trial_on_rich_growthrate_yhr163w,yhr163w).
strain(yhr163w).
has_proposition(trial_on_rich_growthrate_yhr163w_1,trial_on_rich_growthrate_yhr163w_1_design).
design(trial_on_rich_growthrate_yhr163w_1_design).
has_proposition(trial_on_rich_growthrate_yhr163w_1_design,trial_on_rich_growthrate_yhr163w_1_factor).
factor(trial_on_rich_growthrate_yhr163w_1_factor).
has_representation(trial_on_rich_growthrate_yhr163w_1_factor,'presence or absence of yhr163w').
has_input(trial_on_rich_growthrate_yhr163w_1,trial_on_rich_growthrate_yhr163w_1_data).
data(trial_on_rich_growthrate_yhr163w_1_data).
has_part(trial_on_rich_growthrate_yhr163w_1_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_yhr163w_1_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_yhr163w_1_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_yhr163w_1,'jan07-trial1_expt001-plate009').
plate('jan07-trial1_expt001-plate009').
has_proposition(trial_on_rich_growthrate_yhr163w_1,trial_on_rich_growthrate_yhr163w_1_result).
result(trial_on_rich_growthrate_yhr163w_1_result).
has_part(trial_on_rich_growthrate_yhr163w_1_result,trial_on_rich_growthrate_yhr163w_1_result_1).
has_representation(trial_on_rich_growthrate_yhr163w_1_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_yhr163w_1_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_yhr163w_1_result_1,trial_on_rich_growthrate_yhr163w_1_result_1_proc).
procedure(trial_on_rich_growthrate_yhr163w_1_result_1_proc).
has_representation(trial_on_rich_growthrate_yhr163w_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_part(trial_on_rich_growthrate_yhr163w_1_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_yhr163w_1_result,trial_on_rich_growthrate_yhr163w_1_result_2).
has_representation(trial_on_rich_growthrate_yhr163w_1_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_yhr163w_1_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').

has_part(trial_on_rich_growthrate_yhr163w_1_result_2,trial_on_rich_growthrate_yhr163w_1_result_2_proc).
procedure(trial_on_rich_growthrate_yhr163w_1_result_2_proc).
has_representation(trial_on_rich_growthrate_yhr163w_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_part(trial_on_rich_growthrate_yhr163w_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_part(trial_on_rich_growthrate_yhr163w_2,trial_on_rich_growthrate_yhr163w_2_design).
design(trial_on_rich_growthrate_yhr163w_2_design).
has_part(trial_on_rich_growthrate_yhr163w_2_design,trial_on_rich_growthrate_yhr163w_2_factor).
factor(trial_on_rich_growthrate_yhr163w_2_factor).
has_representation(trial_on_rich_growthrate_yhr163w_2_factor,'presence or absence of yhr163w').
has_input(trial_on_rich_growthrate_yhr163w_2,trial_on_rich_growthrate_yhr163w_2_data).
data(trial_on_rich_growthrate_yhr163w_2_data).
has_part(trial_on_rich_growthrate_yhr163w_2_data,'48 values for growth rate of knockout on rich medium').
has_proposition(trial_on_rich_growthrate_yhr163w_2_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_yhr163w_2_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_yhr163w_2,'jan07-trial2_expt001-plate001').
plate('jan07-trial2_expt001-plate001').
has_part(trial_on_rich_growthrate_yhr163w_2,trial_on_rich_growthrate_yhr163w_2_result).
result(trial_on_rich_growthrate_yhr163w_2_result).
has_part(trial_on_rich_growthrate_yhr163w_2_result,trial_on_rich_growthrate_yhr163w_2_result_1).
has_representation(trial_on_rich_growthrate_yhr163w_2_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_yhr163w_2_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').

has_part(trial_on_rich_growthrate_yhr163w_2_result_1,trial_on_rich_growthrate_yhr163w_2_result_1_proc).
procedure(trial_on_rich_growthrate_yhr163w_2_result_1_proc).
has_representation(trial_on_rich_growthrate_yhr163w_2_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_yhr163w_2_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_yhr163w_2_result,trial_on_rich_growthrate_yhr163w_2_result_2).
has_representation(trial_on_rich_growthrate_yhr163w_2_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_yhr163w_2_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_yhr163w_2_result_2,trial_on_rich_growthrate_yhr163w_2_result_2_proc).
procedure(trial_on_rich_growthrate_yhr163w_2_result_2_proc).
has_representation(trial_on_rich_growthrate_yhr163w_2_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_yhr163w_2_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_yhr163w_3,trial_on_rich_growthrate_yhr163w_3_design).
design(trial_on_rich_growthrate_yhr163w_3_design).
has_part(trial_on_rich_growthrate_yhr163w_3_design,trial_on_rich_growthrate_yhr163w_3_factor).
factor(trial_on_rich_growthrate_yhr163w_3_factor).
has_representation(trial_on_rich_growthrate_yhr163w_3_factor,'presence or absence of yhr163w').
has_input(trial_on_rich_growthrate_yhr163w_3,trial_on_rich_growthrate_yhr163w_3_data).
data(trial_on_rich_growthrate_yhr163w_3_data).
has_proposition(trial_on_rich_growthrate_yhr163w_3_data,'48 values for growth rate of knockout on rich medium').
has_proposition(trial_on_rich_growthrate_yhr163w_3_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_yhr163w_3_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_yhr163w_3,'mar07-trial2_expt001-plate001').
plate('mar07-trial2_expt001-plate001').
has_part(trial_on_rich_growthrate_yhr163w_3,trial_on_rich_growthrate_yhr163w_3_result).
result(trial_on_rich_growthrate_yhr163w_3_result).
has_part(trial_on_rich_growthrate_yhr163w_3_result,trial_on_rich_growthrate_yhr163w_3_result_1).
has_representation(trial_on_rich_growthrate_yhr163w_3_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_yhr163w_3_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_part(trial_on_rich_growthrate_yhr163w_3_result_1,trial_on_rich_growthrate_yhr163w_3_result_1_proc).
procedure(trial_on_rich_growthrate_yhr163w_3_result_1_proc).
has_representation(trial_on_rich_growthrate_yhr163w_3_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_yhr163w_3_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_yhr163w_3_result,trial_on_rich_growthrate_yhr163w_3_result_2).
has_representation(trial_on_rich_growthrate_yhr163w_3_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_yhr163w_3_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_part(trial_on_rich_growthrate_yhr163w_3_result_2,trial_on_rich_growthrate_yhr163w_3_result_2_proc).
procedure(trial_on_rich_growthrate_yhr163w_3_result_2_proc).
has_representation(trial_on_rich_growthrate_yhr163w_3_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_yhr163w_3_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_part(trial_on_rich_growthrate_yhr163w_4,trial_on_rich_growthrate_yhr163w_4_design).
design(trial_on_rich_growthrate_yhr163w_4_design).
has_part(trial_on_rich_growthrate_yhr163w_4_design,trial_on_rich_growthrate_yhr163w_4_factor).
factor(trial_on_rich_growthrate_yhr163w_4_factor).
has_representation(trial_on_rich_growthrate_yhr163w_4_factor,'presence or absence of yhr163w').
has_input(trial_on_rich_growthrate_yhr163w_4,trial_on_rich_growthrate_yhr163w_4_data).
data(trial_on_rich_growthrate_yhr163w_4_data).
has_part(trial_on_rich_growthrate_yhr163w_4_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_yhr163w_4_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_yhr163w_4_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_yhr163w_4,'mar07-trial2_expt001-plate002').
plate('mar07-trial2_expt001-plate002').
has_part(trial_on_rich_growthrate_yhr163w_4,trial_on_rich_growthrate_yhr163w_4_result).
result(trial_on_rich_growthrate_yhr163w_4_result).
has_part(trial_on_rich_growthrate_yhr163w_4_result,trial_on_rich_growthrate_yhr163w_4_result_1).
has_representation(trial_on_rich_growthrate_yhr163w_4_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_yhr163w_4_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_part(trial_on_rich_growthrate_yhr163w_4_result_1,trial_on_rich_growthrate_yhr163w_4_result_1_proc).
procedure(trial_on_rich_growthrate_yhr163w_4_result_1_proc).
has_representation(trial_on_rich_growthrate_yhr163w_4_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_yhr163w_4_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_yhr163w_4_result,trial_on_rich_growthrate_yhr163w_4_result_2).
has_representation(trial_on_rich_growthrate_yhr163w_4_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_yhr163w_4_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_part(trial_on_rich_growthrate_yhr163w_4_result_2,trial_on_rich_growthrate_yhr163w_4_result_2_proc).
procedure(trial_on_rich_growthrate_yhr163w_4_result_2_proc).
has_representation(trial_on_rich_growthrate_yhr163w_4_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_yhr163w_4_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_part(trial_on_rich_growthrate_yhr163w_5,trial_on_rich_growthrate_yhr163w_5_design).
design(trial_on_rich_growthrate_yhr163w_5_design).
has_part(trial_on_rich_growthrate_yhr163w_5_design,trial_on_rich_growthrate_yhr163w_5_factor).
factor(trial_on_rich_growthrate_yhr163w_5_factor).
has_representation(trial_on_rich_growthrate_yhr163w_5_factor,'presence or absence of yhr163w').
has_input(trial_on_rich_growthrate_yhr163w_5,trial_on_rich_growthrate_yhr163w_5_data).
data(trial_on_rich_growthrate_yhr163w_5_data).
has_part(trial_on_rich_growthrate_yhr163w_5_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_yhr163w_5_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_yhr163w_5_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_yhr163w_5,'mar07-trial2_expt001-plate003').
plate('mar07-trial2_expt001-plate003').
has_part(trial_on_rich_growthrate_yhr163w_5,trial_on_rich_growthrate_yhr163w_5_result).
result(trial_on_rich_growthrate_yhr163w_5_result).
has_part(trial_on_rich_growthrate_yhr163w_5_result,trial_on_rich_growthrate_yhr163w_5_result_1).
has_representation(trial_on_rich_growthrate_yhr163w_5_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_yhr163w_5_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_part(trial_on_rich_growthrate_yhr163w_5_result_1,trial_on_rich_growthrate_yhr163w_5_result_1_proc).
procedure(trial_on_rich_growthrate_yhr163w_5_result_1_proc).
has_representation(trial_on_rich_growthrate_yhr163w_5_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_yhr163w_5_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_yhr163w_5_result,trial_on_rich_growthrate_yhr163w_5_result_2).
has_representation(trial_on_rich_growthrate_yhr163w_5_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_yhr163w_5_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_part(trial_on_rich_growthrate_yhr163w_5_result_2,trial_on_rich_growthrate_yhr163w_5_result_2_proc).
procedure(trial_on_rich_growthrate_yhr163w_5_result_2_proc).
has_representation(trial_on_rich_growthrate_yhr163w_5_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_yhr163w_5_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_part(trial_on_rich_growthrate_yhr163w_6,trial_on_rich_growthrate_yhr163w_6_design).
design(trial_on_rich_growthrate_yhr163w_6_design).
has_part(trial_on_rich_growthrate_yhr163w_6_design,trial_on_rich_growthrate_yhr163w_6_factor).
factor(trial_on_rich_growthrate_yhr163w_6_factor).
has_representation(trial_on_rich_growthrate_yhr163w_6_factor,'presence or absence of yhr163w').
has_input(trial_on_rich_growthrate_yhr163w_6,trial_on_rich_growthrate_yhr163w_6_data).
data(trial_on_rich_growthrate_yhr163w_6_data).
has_part(trial_on_rich_growthrate_yhr163w_6_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_yhr163w_6_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_yhr163w_6_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_yhr163w_6,'mar07-trial2_expt001-plate004').
plate('mar07-trial2_expt001-plate004').
has_part(trial_on_rich_growthrate_yhr163w_6,trial_on_rich_growthrate_yhr163w_6_result).
result(trial_on_rich_growthrate_yhr163w_6_result).
has_part(trial_on_rich_growthrate_yhr163w_6_result,trial_on_rich_growthrate_yhr163w_6_result_1).
has_representation(trial_on_rich_growthrate_yhr163w_6_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_yhr163w_6_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_part(trial_on_rich_growthrate_yhr163w_6_result_1,trial_on_rich_growthrate_yhr163w_6_result_1_proc).
procedure(trial_on_rich_growthrate_yhr163w_6_result_1_proc).
has_representation(trial_on_rich_growthrate_yhr163w_6_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_yhr163w_6_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_yhr163w_6_result,trial_on_rich_growthrate_yhr163w_6_result_2).
has_representation(trial_on_rich_growthrate_yhr163w_6_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_yhr163w_6_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_part(trial_on_rich_growthrate_yhr163w_6_result_2,trial_on_rich_growthrate_yhr163w_6_result_2_proc).
procedure(trial_on_rich_growthrate_yhr163w_6_result_2_proc).
has_representation(trial_on_rich_growthrate_yhr163w_6_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_yhr163w_6_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_part(trial_on_rich_growthrate_yhr163w_7,trial_on_rich_growthrate_yhr163w_7_design).
design(trial_on_rich_growthrate_yhr163w_7_design).
has_part(trial_on_rich_growthrate_yhr163w_7_design,trial_on_rich_growthrate_yhr163w_7_factor).
factor(trial_on_rich_growthrate_yhr163w_7_factor).
has_representation(trial_on_rich_growthrate_yhr163w_7_factor,'presence or absence of yhr163w').
has_input(trial_on_rich_growthrate_yhr163w_7,trial_on_rich_growthrate_yhr163w_7_data).
data(trial_on_rich_growthrate_yhr163w_7_data).
has_part(trial_on_rich_growthrate_yhr163w_7_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_yhr163w_7_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_yhr163w_7_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_yhr163w_7,'mar07-trial2_expt001-plate005').
plate('mar07-trial2_expt001-plate005').
has_part(trial_on_rich_growthrate_yhr163w_7,trial_on_rich_growthrate_yhr163w_7_result).
result(trial_on_rich_growthrate_yhr163w_7_result).
has_part(trial_on_rich_growthrate_yhr163w_7_result,trial_on_rich_growthrate_yhr163w_7_result_1).
has_representation(trial_on_rich_growthrate_yhr163w_7_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_yhr163w_7_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_part(trial_on_rich_growthrate_yhr163w_7_result_1,trial_on_rich_growthrate_yhr163w_7_result_1_proc).
procedure(trial_on_rich_growthrate_yhr163w_7_result_1_proc).
has_representation(trial_on_rich_growthrate_yhr163w_7_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_yhr163w_7_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_yhr163w_7_result,trial_on_rich_growthrate_yhr163w_7_result_2).
has_representation(trial_on_rich_growthrate_yhr163w_7_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_yhr163w_7_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_yhr163w_7_result_2,trial_on_rich_growthrate_yhr163w_7_result_2_proc).
procedure(trial_on_rich_growthrate_yhr163w_7_result_2_proc).
has_representation(trial_on_rich_growthrate_yhr163w_7_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_yhr163w_7_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_yhr163w_8,trial_on_rich_growthrate_yhr163w_8_design).
design(trial_on_rich_growthrate_yhr163w_8_design).
has_proposition(trial_on_rich_growthrate_yhr163w_8_design,trial_on_rich_growthrate_yhr163w_8_factor).
factor(trial_on_rich_growthrate_yhr163w_8_factor).
has_representation(trial_on_rich_growthrate_yhr163w_8_factor,'presence or absence of yhr163w').
has_input(trial_on_rich_growthrate_yhr163w_8,trial_on_rich_growthrate_yhr163w_8_data).
data(trial_on_rich_growthrate_yhr163w_8_data).
has_part(trial_on_rich_growthrate_yhr163w_8_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_yhr163w_8_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_yhr163w_8_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_yhr163w_8,'mar07-trial2_expt001-plate006').
plate('mar07-trial2_expt001-plate006').
has_proposition(trial_on_rich_growthrate_yhr163w_8,trial_on_rich_growthrate_yhr163w_8_result).
result(trial_on_rich_growthrate_yhr163w_8_result).
has_part(trial_on_rich_growthrate_yhr163w_8_result,trial_on_rich_growthrate_yhr163w_8_result_1).
has_representation(trial_on_rich_growthrate_yhr163w_8_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_yhr163w_8_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_yhr163w_8_result_1,trial_on_rich_growthrate_yhr163w_8_result_1_proc).
procedure(trial_on_rich_growthrate_yhr163w_8_result_1_proc).
has_representation(trial_on_rich_growthrate_yhr163w_8_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_yhr163w_8_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_yhr163w_8_result,trial_on_rich_growthrate_yhr163w_8_result_2).
has_representation(trial_on_rich_growthrate_yhr163w_8_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_yhr163w_8_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_yhr163w_8_result_2,trial_on_rich_growthrate_yhr163w_8_result_2_proc).
procedure(trial_on_rich_growthrate_yhr163w_8_result_2_proc).
has_representation(trial_on_rich_growthrate_yhr163w_8_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_yhr163w_8_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_yhr163w,trial_on_rich_growthrate_yhr163w_results).
result(trial_on_rich_growthrate_yhr163w_results).
has_part(trial_on_rich_growthrate_yhr163w_results,trial_on_rich_growthrate_yhr163w_results_1).
has_representation(trial_on_rich_growthrate_yhr163w_results_1,'median of knockout medians missing yhr163w').
text_representation('median of knockout medians missing yhr163w').
has_proposition(trial_on_rich_growthrate_yhr163w_results_1,trial_on_rich_growthrate_yhr163w_results_1_proc).
procedure(trial_on_rich_growthrate_yhr163w_results_1_proc).
has_proposition(trial_on_rich_growthrate_yhr163w_results_1_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_rich_growthrate_yhr163w_results,trial_on_rich_growthrate_yhr163w_results_2).
has_representation(trial_on_rich_growthrate_yhr163w_results_2,'median of wild type medians').
text_representation('median of wild type medians').
has_proposition(trial_on_rich_growthrate_yhr163w_results_2,trial_on_rich_growthrate_yhr163w_results_2_proc).
procedure(trial_on_rich_growthrate_yhr163w_results_2_proc).
has_proposition(trial_on_rich_growthrate_yhr163w_results_2_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_rich_growthrate_yhr163w_results,trial_on_rich_growthrate_yhr163w_results_3).
has_representation(trial_on_rich_growthrate_yhr163w_results_3,'difference between trial_on_rich_growthrate_yhr163w_results_1 and trial_on_rich_growthrate_yhr163w_results_2').
text_representation('difference between trial_on_rich_growthrate_yhr163w_results_1 and trial_on_rich_growthrate_yhr163w_results_2').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_result).
result(study_on_rich_growthrate_result).
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_1).
has_representation(study_on_rich_growthrate_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_rich_growthrate_result_1,'results/wr_kr_growth_rate.csv').
link('results/wr_kr_growth_rate.csv').
has_proposition(study_on_rich_growthrate_result_1,study_on_rich_growthrate_result_1_proc).
procedure(study_on_rich_growthrate_result_1_proc).
has_proposition(study_on_rich_growthrate_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_2).
has_representation(study_on_rich_growthrate_result_2,'bar graph (histogram) plotting study_on_rich_growthrate_result_1').
text_representation('bar graph (histogram) plotting study_on_rich_growthrate_result_1').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate1.tiff').
link('results/kr_wr_growth_rate1.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate2.tiff').
link('results/kr_wr_growth_rate2.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/overlayed_growth_rate.tiff').
link('results/overlayed_growth_rate.tiff').
has_proposition(study_on_rich_growthrate_result_2,study_on_rich_growthrate_result_2_proc).
procedure(study_on_rich_growthrate_result_2_proc).
has_proposition(study_on_rich_growthrate_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_conclusion).
conclusion(study_on_rich_growthrate_conclusion).
has_representation(study_on_rich_growthrate_conclusion,'The knockouts have higher growth rate in rich than the wild type').
text_representation('The knockouts have higher growth rate in rich than the wild type').
has_proposition(study_on_rich_growthrate_conclusion,'obtain statistical mode of study_on_rich_growthrate_result_1').
procedure('obtain statistical mode of study_on_rich_growthrate_result_1').
text_representation('obtain statistical mode of study_on_rich_growthrate_result_1').
has_part(study_on_rich_growthrate,trial_on_rich_growthrate_ydr035w).
trial(trial_on_rich_growthrate_ydr035w).
has_agent(trial_on_rich_growthrate_ydr035w,ydr035w).
strain(ydr035w).
has_proposition(trial_on_rich_growthrate_ydr035w_1,trial_on_rich_growthrate_ydr035w_1_design).
design(trial_on_rich_growthrate_ydr035w_1_design).
has_proposition(trial_on_rich_growthrate_ydr035w_1_design,trial_on_rich_growthrate_ydr035w_1_factor).
factor(trial_on_rich_growthrate_ydr035w_1_factor).
has_representation(trial_on_rich_growthrate_ydr035w_1_factor,'presence or absence of ydr035w').
has_input(trial_on_rich_growthrate_ydr035w_1,trial_on_rich_growthrate_ydr035w_1_data).
data(trial_on_rich_growthrate_ydr035w_1_data).
has_part(trial_on_rich_growthrate_ydr035w_1_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_ydr035w_1_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_ydr035w_1_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_ydr035w_1,'nature-loop3_expt001-plate006').
plate('nature-loop3_expt001-plate006').
has_proposition(trial_on_rich_growthrate_ydr035w_1,trial_on_rich_growthrate_ydr035w_1_result).
result(trial_on_rich_growthrate_ydr035w_1_result).
has_part(trial_on_rich_growthrate_ydr035w_1_result,trial_on_rich_growthrate_ydr035w_1_result_1).
has_representation(trial_on_rich_growthrate_ydr035w_1_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_ydr035w_1_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_ydr035w_1_result_1,trial_on_rich_growthrate_ydr035w_1_result_1_proc).
procedure(trial_on_rich_growthrate_ydr035w_1_result_1_proc).
has_representation(trial_on_rich_growthrate_ydr035w_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ydr035w_1_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_ydr035w_1_result,trial_on_rich_growthrate_ydr035w_1_result_2).
has_representation(trial_on_rich_growthrate_ydr035w_1_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_ydr035w_1_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_ydr035w_1_result_2,trial_on_rich_growthrate_ydr035w_1_result_2_proc).
procedure(trial_on_rich_growthrate_ydr035w_1_result_2_proc).
has_representation(trial_on_rich_growthrate_ydr035w_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ydr035w_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_ydr035w_2,trial_on_rich_growthrate_ydr035w_2_design).
design(trial_on_rich_growthrate_ydr035w_2_design).
has_proposition(trial_on_rich_growthrate_ydr035w_2_design,trial_on_rich_growthrate_ydr035w_2_factor).
factor(trial_on_rich_growthrate_ydr035w_2_factor).
has_representation(trial_on_rich_growthrate_ydr035w_2_factor,'presence or absence of ydr035w').
has_input(trial_on_rich_growthrate_ydr035w_2,trial_on_rich_growthrate_ydr035w_2_data).
data(trial_on_rich_growthrate_ydr035w_2_data).
has_part(trial_on_rich_growthrate_ydr035w_2_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_ydr035w_2_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_ydr035w_2_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_ydr035w_2,'nature-loop3_expt002-plate003').
plate('nature-loop3_expt002-plate003').
has_proposition(trial_on_rich_growthrate_ydr035w_2,trial_on_rich_growthrate_ydr035w_2_result).
result(trial_on_rich_growthrate_ydr035w_2_result).
has_part(trial_on_rich_growthrate_ydr035w_2_result,trial_on_rich_growthrate_ydr035w_2_result_1).
has_representation(trial_on_rich_growthrate_ydr035w_2_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_ydr035w_2_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_ydr035w_2_result_1,trial_on_rich_growthrate_ydr035w_2_result_1_proc).
procedure(trial_on_rich_growthrate_ydr035w_2_result_1_proc).
has_representation(trial_on_rich_growthrate_ydr035w_2_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ydr035w_2_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_ydr035w_2_result,trial_on_rich_growthrate_ydr035w_2_result_2).
has_representation(trial_on_rich_growthrate_ydr035w_2_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_ydr035w_2_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_ydr035w_2_result_2,trial_on_rich_growthrate_ydr035w_2_result_2_proc).
procedure(trial_on_rich_growthrate_ydr035w_2_result_2_proc).
has_representation(trial_on_rich_growthrate_ydr035w_2_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ydr035w_2_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_ydr035w_3,trial_on_rich_growthrate_ydr035w_3_design).
design(trial_on_rich_growthrate_ydr035w_3_design).
has_proposition(trial_on_rich_growthrate_ydr035w_3_design,trial_on_rich_growthrate_ydr035w_3_factor).
factor(trial_on_rich_growthrate_ydr035w_3_factor).
has_representation(trial_on_rich_growthrate_ydr035w_3_factor,'presence or absence of ydr035w').
has_input(trial_on_rich_growthrate_ydr035w_3,trial_on_rich_growthrate_ydr035w_3_data).
data(trial_on_rich_growthrate_ydr035w_3_data).
has_part(trial_on_rich_growthrate_ydr035w_3_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_ydr035w_3_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_ydr035w_3_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_ydr035w_3,'nature-loop3_expt003-plate006').
plate('nature-loop3_expt003-plate006').
has_proposition(trial_on_rich_growthrate_ydr035w_3,trial_on_rich_growthrate_ydr035w_3_result).
result(trial_on_rich_growthrate_ydr035w_3_result).
has_part(trial_on_rich_growthrate_ydr035w_3_result,trial_on_rich_growthrate_ydr035w_3_result_1).
has_representation(trial_on_rich_growthrate_ydr035w_3_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_ydr035w_3_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_ydr035w_3_result_1,trial_on_rich_growthrate_ydr035w_3_result_1_proc).
procedure(trial_on_rich_growthrate_ydr035w_3_result_1_proc).
has_representation(trial_on_rich_growthrate_ydr035w_3_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ydr035w_3_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_ydr035w_3_result,trial_on_rich_growthrate_ydr035w_3_result_2).
has_representation(trial_on_rich_growthrate_ydr035w_3_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_ydr035w_3_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_ydr035w_3_result_2,trial_on_rich_growthrate_ydr035w_3_result_2_proc).
procedure(trial_on_rich_growthrate_ydr035w_3_result_2_proc).
has_representation(trial_on_rich_growthrate_ydr035w_3_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ydr035w_3_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_ydr035w_4,trial_on_rich_growthrate_ydr035w_4_design).
design(trial_on_rich_growthrate_ydr035w_4_design).
has_proposition(trial_on_rich_growthrate_ydr035w_4_design,trial_on_rich_growthrate_ydr035w_4_factor).
factor(trial_on_rich_growthrate_ydr035w_4_factor).
has_representation(trial_on_rich_growthrate_ydr035w_4_factor,'presence or absence of ydr035w').
has_input(trial_on_rich_growthrate_ydr035w_4,trial_on_rich_growthrate_ydr035w_4_data).
data(trial_on_rich_growthrate_ydr035w_4_data).
has_part(trial_on_rich_growthrate_ydr035w_4_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_ydr035w_4_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_ydr035w_4_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_ydr035w_4,'nature-loop3_expt004-plate003').
plate('nature-loop3_expt004-plate003').
has_proposition(trial_on_rich_growthrate_ydr035w_4,trial_on_rich_growthrate_ydr035w_4_result).
result(trial_on_rich_growthrate_ydr035w_4_result).
has_part(trial_on_rich_growthrate_ydr035w_4_result,trial_on_rich_growthrate_ydr035w_4_result_1).
has_representation(trial_on_rich_growthrate_ydr035w_4_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_ydr035w_4_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_ydr035w_4_result_1,trial_on_rich_growthrate_ydr035w_4_result_1_proc).
procedure(trial_on_rich_growthrate_ydr035w_4_result_1_proc).
has_representation(trial_on_rich_growthrate_ydr035w_4_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ydr035w_4_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_ydr035w_4_result,trial_on_rich_growthrate_ydr035w_4_result_2).
has_representation(trial_on_rich_growthrate_ydr035w_4_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_ydr035w_4_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_ydr035w_4_result_2,trial_on_rich_growthrate_ydr035w_4_result_2_proc).
procedure(trial_on_rich_growthrate_ydr035w_4_result_2_proc).
has_representation(trial_on_rich_growthrate_ydr035w_4_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ydr035w_4_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_ydr035w_5,trial_on_rich_growthrate_ydr035w_5_design).
design(trial_on_rich_growthrate_ydr035w_5_design).
has_proposition(trial_on_rich_growthrate_ydr035w_5_design,trial_on_rich_growthrate_ydr035w_5_factor).
factor(trial_on_rich_growthrate_ydr035w_5_factor).
has_representation(trial_on_rich_growthrate_ydr035w_5_factor,'presence or absence of ydr035w').
has_input(trial_on_rich_growthrate_ydr035w_5,trial_on_rich_growthrate_ydr035w_5_data).
data(trial_on_rich_growthrate_ydr035w_5_data).
has_part(trial_on_rich_growthrate_ydr035w_5_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_ydr035w_5_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_ydr035w_5_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_ydr035w_5,'nature-loop3_expt005-plate003').
plate('nature-loop3_expt005-plate003').
has_proposition(trial_on_rich_growthrate_ydr035w_5,trial_on_rich_growthrate_ydr035w_5_result).
result(trial_on_rich_growthrate_ydr035w_5_result).
has_part(trial_on_rich_growthrate_ydr035w_5_result,trial_on_rich_growthrate_ydr035w_5_result_1).
has_representation(trial_on_rich_growthrate_ydr035w_5_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_ydr035w_5_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_ydr035w_5_result_1,trial_on_rich_growthrate_ydr035w_5_result_1_proc).
procedure(trial_on_rich_growthrate_ydr035w_5_result_1_proc).
has_representation(trial_on_rich_growthrate_ydr035w_5_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ydr035w_5_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_ydr035w_5_result,trial_on_rich_growthrate_ydr035w_5_result_2).
has_representation(trial_on_rich_growthrate_ydr035w_5_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_ydr035w_5_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_ydr035w_5_result_2,trial_on_rich_growthrate_ydr035w_5_result_2_proc).
procedure(trial_on_rich_growthrate_ydr035w_5_result_2_proc).
has_representation(trial_on_rich_growthrate_ydr035w_5_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ydr035w_5_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_ydr035w_6,trial_on_rich_growthrate_ydr035w_6_design).
design(trial_on_rich_growthrate_ydr035w_6_design).
has_proposition(trial_on_rich_growthrate_ydr035w_6_design,trial_on_rich_growthrate_ydr035w_6_factor).
factor(trial_on_rich_growthrate_ydr035w_6_factor).
has_representation(trial_on_rich_growthrate_ydr035w_6_factor,'presence or absence of ydr035w').
has_input(trial_on_rich_growthrate_ydr035w_6,trial_on_rich_growthrate_ydr035w_6_data).
data(trial_on_rich_growthrate_ydr035w_6_data).
has_part(trial_on_rich_growthrate_ydr035w_6_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_ydr035w_6_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_ydr035w_6_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_ydr035w_6,'nature-loop1_expt001-plate006').
plate('nature-loop1_expt001-plate006').
has_proposition(trial_on_rich_growthrate_ydr035w_6,trial_on_rich_growthrate_ydr035w_6_result).
result(trial_on_rich_growthrate_ydr035w_6_result).
has_part(trial_on_rich_growthrate_ydr035w_6_result,trial_on_rich_growthrate_ydr035w_6_result_1).
has_representation(trial_on_rich_growthrate_ydr035w_6_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_ydr035w_6_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_ydr035w_6_result_1,trial_on_rich_growthrate_ydr035w_6_result_1_proc).
procedure(trial_on_rich_growthrate_ydr035w_6_result_1_proc).
has_representation(trial_on_rich_growthrate_ydr035w_6_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ydr035w_6_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_ydr035w_6_result,trial_on_rich_growthrate_ydr035w_6_result_2).
has_representation(trial_on_rich_growthrate_ydr035w_6_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_ydr035w_6_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_ydr035w_6_result_2,trial_on_rich_growthrate_ydr035w_6_result_2_proc).
procedure(trial_on_rich_growthrate_ydr035w_6_result_2_proc).
has_representation(trial_on_rich_growthrate_ydr035w_6_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ydr035w_6_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_ydr035w_7,trial_on_rich_growthrate_ydr035w_7_design).
design(trial_on_rich_growthrate_ydr035w_7_design).
has_proposition(trial_on_rich_growthrate_ydr035w_7_design,trial_on_rich_growthrate_ydr035w_7_factor).
factor(trial_on_rich_growthrate_ydr035w_7_factor).
has_representation(trial_on_rich_growthrate_ydr035w_7_factor,'presence or absence of ydr035w').
has_input(trial_on_rich_growthrate_ydr035w_7,trial_on_rich_growthrate_ydr035w_7_data).
data(trial_on_rich_growthrate_ydr035w_7_data).
has_part(trial_on_rich_growthrate_ydr035w_7_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_ydr035w_7_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_ydr035w_7_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_ydr035w_7,'nature-loop2_expt001-plate002').
plate('nature-loop2_expt001-plate002').
has_proposition(trial_on_rich_growthrate_ydr035w_7,trial_on_rich_growthrate_ydr035w_7_result).
result(trial_on_rich_growthrate_ydr035w_7_result).
has_part(trial_on_rich_growthrate_ydr035w_7_result,trial_on_rich_growthrate_ydr035w_7_result_1).
has_representation(trial_on_rich_growthrate_ydr035w_7_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_ydr035w_7_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_ydr035w_7_result_1,trial_on_rich_growthrate_ydr035w_7_result_1_proc).
procedure(trial_on_rich_growthrate_ydr035w_7_result_1_proc).
has_representation(trial_on_rich_growthrate_ydr035w_7_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ydr035w_7_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_ydr035w_7_result,trial_on_rich_growthrate_ydr035w_7_result_2).
has_representation(trial_on_rich_growthrate_ydr035w_7_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_ydr035w_7_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_ydr035w_7_result_2,trial_on_rich_growthrate_ydr035w_7_result_2_proc).
procedure(trial_on_rich_growthrate_ydr035w_7_result_2_proc).
has_representation(trial_on_rich_growthrate_ydr035w_7_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ydr035w_7_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_ydr035w_8,trial_on_rich_growthrate_ydr035w_8_design).
design(trial_on_rich_growthrate_ydr035w_8_design).
has_proposition(trial_on_rich_growthrate_ydr035w_8_design,trial_on_rich_growthrate_ydr035w_8_factor).
factor(trial_on_rich_growthrate_ydr035w_8_factor).
has_representation(trial_on_rich_growthrate_ydr035w_8_factor,'presence or absence of ydr035w').
has_input(trial_on_rich_growthrate_ydr035w_8,trial_on_rich_growthrate_ydr035w_8_data).
data(trial_on_rich_growthrate_ydr035w_8_data).
has_part(trial_on_rich_growthrate_ydr035w_8_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_ydr035w_8_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_ydr035w_8_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_ydr035w_8,'nature-loop2_expt001-plate009').
plate('nature-loop2_expt001-plate009').
has_proposition(trial_on_rich_growthrate_ydr035w_8,trial_on_rich_growthrate_ydr035w_8_result).
result(trial_on_rich_growthrate_ydr035w_8_result).
has_part(trial_on_rich_growthrate_ydr035w_8_result,trial_on_rich_growthrate_ydr035w_8_result_1).
has_representation(trial_on_rich_growthrate_ydr035w_8_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_ydr035w_8_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_ydr035w_8_result_1,trial_on_rich_growthrate_ydr035w_8_result_1_proc).
procedure(trial_on_rich_growthrate_ydr035w_8_result_1_proc).
has_representation(trial_on_rich_growthrate_ydr035w_8_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ydr035w_8_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_ydr035w_8_result,trial_on_rich_growthrate_ydr035w_8_result_2).
has_representation(trial_on_rich_growthrate_ydr035w_8_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_ydr035w_8_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_ydr035w_8_result_2,trial_on_rich_growthrate_ydr035w_8_result_2_proc).
procedure(trial_on_rich_growthrate_ydr035w_8_result_2_proc).
has_representation(trial_on_rich_growthrate_ydr035w_8_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ydr035w_8_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_ydr035w_9,trial_on_rich_growthrate_ydr035w_9_design).
design(trial_on_rich_growthrate_ydr035w_9_design).
has_proposition(trial_on_rich_growthrate_ydr035w_9_design,trial_on_rich_growthrate_ydr035w_9_factor).
factor(trial_on_rich_growthrate_ydr035w_9_factor).
has_representation(trial_on_rich_growthrate_ydr035w_9_factor,'presence or absence of ydr035w').
has_input(trial_on_rich_growthrate_ydr035w_9,trial_on_rich_growthrate_ydr035w_9_data).
data(trial_on_rich_growthrate_ydr035w_9_data).
has_part(trial_on_rich_growthrate_ydr035w_9_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_ydr035w_9_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_ydr035w_9_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_ydr035w_9,'nature-loop3_expt006-plate002').
plate('nature-loop3_expt006-plate002').
has_proposition(trial_on_rich_growthrate_ydr035w_9,trial_on_rich_growthrate_ydr035w_9_result).
result(trial_on_rich_growthrate_ydr035w_9_result).
has_part(trial_on_rich_growthrate_ydr035w_9_result,trial_on_rich_growthrate_ydr035w_9_result_1).
has_representation(trial_on_rich_growthrate_ydr035w_9_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_ydr035w_9_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_ydr035w_9_result_1,trial_on_rich_growthrate_ydr035w_9_result_1_proc).
procedure(trial_on_rich_growthrate_ydr035w_9_result_1_proc).
has_representation(trial_on_rich_growthrate_ydr035w_9_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ydr035w_9_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_ydr035w_9_result,trial_on_rich_growthrate_ydr035w_9_result_2).
has_representation(trial_on_rich_growthrate_ydr035w_9_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_ydr035w_9_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_ydr035w_9_result_2,trial_on_rich_growthrate_ydr035w_9_result_2_proc).
procedure(trial_on_rich_growthrate_ydr035w_9_result_2_proc).
has_representation(trial_on_rich_growthrate_ydr035w_9_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ydr035w_9_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_ydr035w,trial_on_rich_growthrate_ydr035w_results).
result(trial_on_rich_growthrate_ydr035w_results).
has_part(trial_on_rich_growthrate_ydr035w_results,trial_on_rich_growthrate_ydr035w_results_1).
has_representation(trial_on_rich_growthrate_ydr035w_results_1,'median of knockout medians missing ydr035w').
text_representation('median of knockout medians missing ydr035w').
has_proposition(trial_on_rich_growthrate_ydr035w_results_1,trial_on_rich_growthrate_ydr035w_results_1_proc).
procedure(trial_on_rich_growthrate_ydr035w_results_1_proc).
has_proposition(trial_on_rich_growthrate_ydr035w_results_1_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_rich_growthrate_ydr035w_results,trial_on_rich_growthrate_ydr035w_results_2).
has_representation(trial_on_rich_growthrate_ydr035w_results_2,'median of wild type medians').
text_representation('median of wild type medians').
has_proposition(trial_on_rich_growthrate_ydr035w_results_2,trial_on_rich_growthrate_ydr035w_results_2_proc).
procedure(trial_on_rich_growthrate_ydr035w_results_2_proc).
has_proposition(trial_on_rich_growthrate_ydr035w_results_2_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_rich_growthrate_ydr035w_results,trial_on_rich_growthrate_ydr035w_results_3).
has_representation(trial_on_rich_growthrate_ydr035w_results_3,'difference between trial_on_rich_growthrate_ydr035w_results_1 and trial_on_rich_growthrate_ydr035w_results_2').
text_representation('difference between trial_on_rich_growthrate_ydr035w_results_1 and trial_on_rich_growthrate_ydr035w_results_2').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_result).
result(study_on_rich_growthrate_result).
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_1).
has_representation(study_on_rich_growthrate_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_rich_growthrate_result_1,'results/wr_kr_growth_rate.csv').
link('results/wr_kr_growth_rate.csv').
has_proposition(study_on_rich_growthrate_result_1,study_on_rich_growthrate_result_1_proc).
procedure(study_on_rich_growthrate_result_1_proc).
has_proposition(study_on_rich_growthrate_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_2).
has_representation(study_on_rich_growthrate_result_2,'bar graph (histogram) plotting study_on_rich_growthrate_result_1').
text_representation('bar graph (histogram) plotting study_on_rich_growthrate_result_1').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate1.tiff').
link('results/kr_wr_growth_rate1.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate2.tiff').
link('results/kr_wr_growth_rate2.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/overlayed_growth_rate.tiff').
link('results/overlayed_growth_rate.tiff').
has_proposition(study_on_rich_growthrate_result_2,study_on_rich_growthrate_result_2_proc).
procedure(study_on_rich_growthrate_result_2_proc).
has_proposition(study_on_rich_growthrate_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_conclusion).
conclusion(study_on_rich_growthrate_conclusion).
has_representation(study_on_rich_growthrate_conclusion,'The knockouts have higher growth rate in rich than the wild type').
text_representation('The knockouts have higher growth rate in rich than the wild type').
has_proposition(study_on_rich_growthrate_conclusion,'obtain statistical mode of study_on_rich_growthrate_result_1').
procedure('obtain statistical mode of study_on_rich_growthrate_result_1').
text_representation('obtain statistical mode of study_on_rich_growthrate_result_1').
has_part(study_on_rich_growthrate,trial_on_rich_growthrate_ygr248w).
trial(trial_on_rich_growthrate_ygr248w).
has_agent(trial_on_rich_growthrate_ygr248w,ygr248w).
strain(ygr248w).
has_proposition(trial_on_rich_growthrate_ygr248w_1,trial_on_rich_growthrate_ygr248w_1_design).
design(trial_on_rich_growthrate_ygr248w_1_design).
has_proposition(trial_on_rich_growthrate_ygr248w_1_design,trial_on_rich_growthrate_ygr248w_1_factor).
factor(trial_on_rich_growthrate_ygr248w_1_factor).
has_representation(trial_on_rich_growthrate_ygr248w_1_factor,'presence or absence of ygr248w').
has_input(trial_on_rich_growthrate_ygr248w_1,trial_on_rich_growthrate_ygr248w_1_data).
data(trial_on_rich_growthrate_ygr248w_1_data).
has_part(trial_on_rich_growthrate_ygr248w_1_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_ygr248w_1_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_ygr248w_1_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_ygr248w_1,'feb07-trial1_expt001-plate008').
plate('feb07-trial1_expt001-plate008').
has_proposition(trial_on_rich_growthrate_ygr248w_1,trial_on_rich_growthrate_ygr248w_1_result).
result(trial_on_rich_growthrate_ygr248w_1_result).
has_part(trial_on_rich_growthrate_ygr248w_1_result,trial_on_rich_growthrate_ygr248w_1_result_1).
has_representation(trial_on_rich_growthrate_ygr248w_1_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_ygr248w_1_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_ygr248w_1_result_1,trial_on_rich_growthrate_ygr248w_1_result_1_proc).
procedure(trial_on_rich_growthrate_ygr248w_1_result_1_proc).
has_representation(trial_on_rich_growthrate_ygr248w_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ygr248w_1_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_ygr248w_1_result,trial_on_rich_growthrate_ygr248w_1_result_2).
has_representation(trial_on_rich_growthrate_ygr248w_1_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_ygr248w_1_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_ygr248w_1_result_2,trial_on_rich_growthrate_ygr248w_1_result_2_proc).
procedure(trial_on_rich_growthrate_ygr248w_1_result_2_proc).
has_representation(trial_on_rich_growthrate_ygr248w_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ygr248w_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_ygr248w_2,trial_on_rich_growthrate_ygr248w_2_design).
design(trial_on_rich_growthrate_ygr248w_2_design).
has_proposition(trial_on_rich_growthrate_ygr248w_2_design,trial_on_rich_growthrate_ygr248w_2_factor).
factor(trial_on_rich_growthrate_ygr248w_2_factor).
has_representation(trial_on_rich_growthrate_ygr248w_2_factor,'presence or absence of ygr248w').
has_input(trial_on_rich_growthrate_ygr248w_2,trial_on_rich_growthrate_ygr248w_2_data).
data(trial_on_rich_growthrate_ygr248w_2_data).
has_part(trial_on_rich_growthrate_ygr248w_2_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_ygr248w_2_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_ygr248w_2_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_ygr248w_2,'feb07-trial1_expt001-plate009').
plate('feb07-trial1_expt001-plate009').
has_proposition(trial_on_rich_growthrate_ygr248w_2,trial_on_rich_growthrate_ygr248w_2_result).
result(trial_on_rich_growthrate_ygr248w_2_result).
has_part(trial_on_rich_growthrate_ygr248w_2_result,trial_on_rich_growthrate_ygr248w_2_result_1).
has_representation(trial_on_rich_growthrate_ygr248w_2_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_ygr248w_2_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_ygr248w_2_result_1,trial_on_rich_growthrate_ygr248w_2_result_1_proc).
procedure(trial_on_rich_growthrate_ygr248w_2_result_1_proc).
has_representation(trial_on_rich_growthrate_ygr248w_2_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ygr248w_2_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_ygr248w_2_result,trial_on_rich_growthrate_ygr248w_2_result_2).
has_representation(trial_on_rich_growthrate_ygr248w_2_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_ygr248w_2_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_ygr248w_2_result_2,trial_on_rich_growthrate_ygr248w_2_result_2_proc).
procedure(trial_on_rich_growthrate_ygr248w_2_result_2_proc).
has_representation(trial_on_rich_growthrate_ygr248w_2_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ygr248w_2_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_ygr248w,trial_on_rich_growthrate_ygr248w_results).
result(trial_on_rich_growthrate_ygr248w_results).
has_part(trial_on_rich_growthrate_ygr248w_results,trial_on_rich_growthrate_ygr248w_results_1).
has_representation(trial_on_rich_growthrate_ygr248w_results_1,'median of knockout medians missing ygr248w').
text_representation('median of knockout medians missing ygr248w').
has_proposition(trial_on_rich_growthrate_ygr248w_results_1,trial_on_rich_growthrate_ygr248w_results_1_proc).
procedure(trial_on_rich_growthrate_ygr248w_results_1_proc).
has_proposition(trial_on_rich_growthrate_ygr248w_results_1_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_rich_growthrate_ygr248w_results,trial_on_rich_growthrate_ygr248w_results_2).
has_representation(trial_on_rich_growthrate_ygr248w_results_2,'median of wild type medians').
text_representation('median of wild type medians').
has_proposition(trial_on_rich_growthrate_ygr248w_results_2,trial_on_rich_growthrate_ygr248w_results_2_proc).
procedure(trial_on_rich_growthrate_ygr248w_results_2_proc).
has_proposition(trial_on_rich_growthrate_ygr248w_results_2_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_rich_growthrate_ygr248w_results,trial_on_rich_growthrate_ygr248w_results_3).
has_representation(trial_on_rich_growthrate_ygr248w_results_3,'difference between trial_on_rich_growthrate_ygr248w_results_1 and trial_on_rich_growthrate_ygr248w_results_2').
text_representation('difference between trial_on_rich_growthrate_ygr248w_results_1 and trial_on_rich_growthrate_ygr248w_results_2').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_result).
result(study_on_rich_growthrate_result).
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_1).
has_representation(study_on_rich_growthrate_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_rich_growthrate_result_1,'results/wr_kr_growth_rate.csv').
link('results/wr_kr_growth_rate.csv').
has_proposition(study_on_rich_growthrate_result_1,study_on_rich_growthrate_result_1_proc).
procedure(study_on_rich_growthrate_result_1_proc).
has_proposition(study_on_rich_growthrate_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_2).
has_representation(study_on_rich_growthrate_result_2,'bar graph (histogram) plotting study_on_rich_growthrate_result_1').
text_representation('bar graph (histogram) plotting study_on_rich_growthrate_result_1').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate1.tiff').
link('results/kr_wr_growth_rate1.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate2.tiff').
link('results/kr_wr_growth_rate2.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/overlayed_growth_rate.tiff').
link('results/overlayed_growth_rate.tiff').
has_proposition(study_on_rich_growthrate_result_2,study_on_rich_growthrate_result_2_proc).
procedure(study_on_rich_growthrate_result_2_proc).
has_proposition(study_on_rich_growthrate_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_conclusion).
conclusion(study_on_rich_growthrate_conclusion).
has_representation(study_on_rich_growthrate_conclusion,'The knockouts have higher growth rate in rich than the wild type').
text_representation('The knockouts have higher growth rate in rich than the wild type').
has_proposition(study_on_rich_growthrate_conclusion,'obtain statistical mode of study_on_rich_growthrate_result_1').
procedure('obtain statistical mode of study_on_rich_growthrate_result_1').
text_representation('obtain statistical mode of study_on_rich_growthrate_result_1').
has_part(study_on_rich_growthrate,trial_on_rich_growthrate_ymr020w).
trial(trial_on_rich_growthrate_ymr020w).
has_agent(trial_on_rich_growthrate_ymr020w,ymr020w).
strain(ymr020w).
has_proposition(trial_on_rich_growthrate_ymr020w_1,trial_on_rich_growthrate_ymr020w_1_design).
design(trial_on_rich_growthrate_ymr020w_1_design).
has_proposition(trial_on_rich_growthrate_ymr020w_1_design,trial_on_rich_growthrate_ymr020w_1_factor).
factor(trial_on_rich_growthrate_ymr020w_1_factor).
has_representation(trial_on_rich_growthrate_ymr020w_1_factor,'presence or absence of ymr020w').
has_input(trial_on_rich_growthrate_ymr020w_1,trial_on_rich_growthrate_ymr020w_1_data).
data(trial_on_rich_growthrate_ymr020w_1_data).
has_part(trial_on_rich_growthrate_ymr020w_1_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_ymr020w_1_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_ymr020w_1_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_ymr020w_1,'mar07-trial4_expt1-plate003').
plate('mar07-trial4_expt1-plate003').
has_proposition(trial_on_rich_growthrate_ymr020w_1,trial_on_rich_growthrate_ymr020w_1_result).
result(trial_on_rich_growthrate_ymr020w_1_result).
has_part(trial_on_rich_growthrate_ymr020w_1_result,trial_on_rich_growthrate_ymr020w_1_result_1).
has_representation(trial_on_rich_growthrate_ymr020w_1_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_ymr020w_1_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_ymr020w_1_result_1,trial_on_rich_growthrate_ymr020w_1_result_1_proc).
procedure(trial_on_rich_growthrate_ymr020w_1_result_1_proc).
has_representation(trial_on_rich_growthrate_ymr020w_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ymr020w_1_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_ymr020w_1_result,trial_on_rich_growthrate_ymr020w_1_result_2).
has_representation(trial_on_rich_growthrate_ymr020w_1_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_ymr020w_1_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_ymr020w_1_result_2,trial_on_rich_growthrate_ymr020w_1_result_2_proc).
procedure(trial_on_rich_growthrate_ymr020w_1_result_2_proc).
has_representation(trial_on_rich_growthrate_ymr020w_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ymr020w_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_ymr020w_2,trial_on_rich_growthrate_ymr020w_2_design).
design(trial_on_rich_growthrate_ymr020w_2_design).
has_proposition(trial_on_rich_growthrate_ymr020w_2_design,trial_on_rich_growthrate_ymr020w_2_factor).
factor(trial_on_rich_growthrate_ymr020w_2_factor).
has_representation(trial_on_rich_growthrate_ymr020w_2_factor,'presence or absence of ymr020w').
has_input(trial_on_rich_growthrate_ymr020w_2,trial_on_rich_growthrate_ymr020w_2_data).
data(trial_on_rich_growthrate_ymr020w_2_data).
has_part(trial_on_rich_growthrate_ymr020w_2_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_ymr020w_2_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_ymr020w_2_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_ymr020w_2,'mar07-trial5_expt001-plate006').
plate('mar07-trial5_expt001-plate006').
has_proposition(trial_on_rich_growthrate_ymr020w_2,trial_on_rich_growthrate_ymr020w_2_result).
result(trial_on_rich_growthrate_ymr020w_2_result).
has_part(trial_on_rich_growthrate_ymr020w_2_result,trial_on_rich_growthrate_ymr020w_2_result_1).
has_representation(trial_on_rich_growthrate_ymr020w_2_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_ymr020w_2_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_ymr020w_2_result_1,trial_on_rich_growthrate_ymr020w_2_result_1_proc).
procedure(trial_on_rich_growthrate_ymr020w_2_result_1_proc).
has_representation(trial_on_rich_growthrate_ymr020w_2_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ymr020w_2_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_ymr020w_2_result,trial_on_rich_growthrate_ymr020w_2_result_2).
has_representation(trial_on_rich_growthrate_ymr020w_2_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_ymr020w_2_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_ymr020w_2_result_2,trial_on_rich_growthrate_ymr020w_2_result_2_proc).
procedure(trial_on_rich_growthrate_ymr020w_2_result_2_proc).
has_representation(trial_on_rich_growthrate_ymr020w_2_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ymr020w_2_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_ymr020w_3,trial_on_rich_growthrate_ymr020w_3_design).
design(trial_on_rich_growthrate_ymr020w_3_design).
has_proposition(trial_on_rich_growthrate_ymr020w_3_design,trial_on_rich_growthrate_ymr020w_3_factor).
factor(trial_on_rich_growthrate_ymr020w_3_factor).
has_representation(trial_on_rich_growthrate_ymr020w_3_factor,'presence or absence of ymr020w').
has_input(trial_on_rich_growthrate_ymr020w_3,trial_on_rich_growthrate_ymr020w_3_data).
data(trial_on_rich_growthrate_ymr020w_3_data).
has_part(trial_on_rich_growthrate_ymr020w_3_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_ymr020w_3_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_ymr020w_3_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_ymr020w_3,'mar07-trial7_expt001-plate004').
plate('mar07-trial7_expt001-plate004').
has_proposition(trial_on_rich_growthrate_ymr020w_3,trial_on_rich_growthrate_ymr020w_3_result).
result(trial_on_rich_growthrate_ymr020w_3_result).
has_part(trial_on_rich_growthrate_ymr020w_3_result,trial_on_rich_growthrate_ymr020w_3_result_1).
has_representation(trial_on_rich_growthrate_ymr020w_3_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_ymr020w_3_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_ymr020w_3_result_1,trial_on_rich_growthrate_ymr020w_3_result_1_proc).
procedure(trial_on_rich_growthrate_ymr020w_3_result_1_proc).
has_representation(trial_on_rich_growthrate_ymr020w_3_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ymr020w_3_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_ymr020w_3_result,trial_on_rich_growthrate_ymr020w_3_result_2).
has_representation(trial_on_rich_growthrate_ymr020w_3_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_ymr020w_3_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_ymr020w_3_result_2,trial_on_rich_growthrate_ymr020w_3_result_2_proc).
procedure(trial_on_rich_growthrate_ymr020w_3_result_2_proc).
has_representation(trial_on_rich_growthrate_ymr020w_3_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ymr020w_3_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_ymr020w_4,trial_on_rich_growthrate_ymr020w_4_design).
design(trial_on_rich_growthrate_ymr020w_4_design).
has_proposition(trial_on_rich_growthrate_ymr020w_4_design,trial_on_rich_growthrate_ymr020w_4_factor).
factor(trial_on_rich_growthrate_ymr020w_4_factor).
has_representation(trial_on_rich_growthrate_ymr020w_4_factor,'presence or absence of ymr020w').
has_input(trial_on_rich_growthrate_ymr020w_4,trial_on_rich_growthrate_ymr020w_4_data).
data(trial_on_rich_growthrate_ymr020w_4_data).
has_part(trial_on_rich_growthrate_ymr020w_4_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_ymr020w_4_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_ymr020w_4_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_ymr020w_4,'mar07-trial7_expt001-plate006').
plate('mar07-trial7_expt001-plate006').
has_proposition(trial_on_rich_growthrate_ymr020w_4,trial_on_rich_growthrate_ymr020w_4_result).
result(trial_on_rich_growthrate_ymr020w_4_result).
has_part(trial_on_rich_growthrate_ymr020w_4_result,trial_on_rich_growthrate_ymr020w_4_result_1).
has_representation(trial_on_rich_growthrate_ymr020w_4_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_ymr020w_4_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_ymr020w_4_result_1,trial_on_rich_growthrate_ymr020w_4_result_1_proc).
procedure(trial_on_rich_growthrate_ymr020w_4_result_1_proc).
has_representation(trial_on_rich_growthrate_ymr020w_4_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ymr020w_4_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_ymr020w_4_result,trial_on_rich_growthrate_ymr020w_4_result_2).
has_representation(trial_on_rich_growthrate_ymr020w_4_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_ymr020w_4_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_ymr020w_4_result_2,trial_on_rich_growthrate_ymr020w_4_result_2_proc).
procedure(trial_on_rich_growthrate_ymr020w_4_result_2_proc).
has_representation(trial_on_rich_growthrate_ymr020w_4_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ymr020w_4_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_ymr020w,trial_on_rich_growthrate_ymr020w_results).
result(trial_on_rich_growthrate_ymr020w_results).
has_part(trial_on_rich_growthrate_ymr020w_results,trial_on_rich_growthrate_ymr020w_results_1).
has_representation(trial_on_rich_growthrate_ymr020w_results_1,'median of knockout medians missing ymr020w').
text_representation('median of knockout medians missing ymr020w').
has_proposition(trial_on_rich_growthrate_ymr020w_results_1,trial_on_rich_growthrate_ymr020w_results_1_proc).
procedure(trial_on_rich_growthrate_ymr020w_results_1_proc).
has_proposition(trial_on_rich_growthrate_ymr020w_results_1_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_rich_growthrate_ymr020w_results,trial_on_rich_growthrate_ymr020w_results_2).
has_representation(trial_on_rich_growthrate_ymr020w_results_2,'median of wild type medians').
text_representation('median of wild type medians').
has_proposition(trial_on_rich_growthrate_ymr020w_results_2,trial_on_rich_growthrate_ymr020w_results_2_proc).
procedure(trial_on_rich_growthrate_ymr020w_results_2_proc).
has_proposition(trial_on_rich_growthrate_ymr020w_results_2_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_rich_growthrate_ymr020w_results,trial_on_rich_growthrate_ymr020w_results_3).
has_representation(trial_on_rich_growthrate_ymr020w_results_3,'difference between trial_on_rich_growthrate_ymr020w_results_1 and trial_on_rich_growthrate_ymr020w_results_2').
text_representation('difference between trial_on_rich_growthrate_ymr020w_results_1 and trial_on_rich_growthrate_ymr020w_results_2').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_result).
result(study_on_rich_growthrate_result).
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_1).
has_representation(study_on_rich_growthrate_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_rich_growthrate_result_1,'results/wr_kr_growth_rate.csv').
link('results/wr_kr_growth_rate.csv').
has_proposition(study_on_rich_growthrate_result_1,study_on_rich_growthrate_result_1_proc).
procedure(study_on_rich_growthrate_result_1_proc).
has_proposition(study_on_rich_growthrate_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_2).
has_representation(study_on_rich_growthrate_result_2,'bar graph (histogram) plotting study_on_rich_growthrate_result_1').
text_representation('bar graph (histogram) plotting study_on_rich_growthrate_result_1').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate1.tiff').
link('results/kr_wr_growth_rate1.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate2.tiff').
link('results/kr_wr_growth_rate2.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/overlayed_growth_rate.tiff').
link('results/overlayed_growth_rate.tiff').
has_proposition(study_on_rich_growthrate_result_2,study_on_rich_growthrate_result_2_proc).
procedure(study_on_rich_growthrate_result_2_proc).
has_proposition(study_on_rich_growthrate_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_conclusion).
conclusion(study_on_rich_growthrate_conclusion).
has_representation(study_on_rich_growthrate_conclusion,'The knockouts have higher growth rate in rich than the wild type').
text_representation('The knockouts have higher growth rate in rich than the wild type').
has_proposition(study_on_rich_growthrate_conclusion,'obtain statistical mode of study_on_rich_growthrate_result_1').
procedure('obtain statistical mode of study_on_rich_growthrate_result_1').
text_representation('obtain statistical mode of study_on_rich_growthrate_result_1').
has_part(study_on_rich_growthrate,trial_on_rich_growthrate_ylr017w).
trial(trial_on_rich_growthrate_ylr017w).
has_agent(trial_on_rich_growthrate_ylr017w,ylr017w).
strain(ylr017w).
has_proposition(trial_on_rich_growthrate_ylr017w_1,trial_on_rich_growthrate_ylr017w_1_design).
design(trial_on_rich_growthrate_ylr017w_1_design).
has_proposition(trial_on_rich_growthrate_ylr017w_1_design,trial_on_rich_growthrate_ylr017w_1_factor).
factor(trial_on_rich_growthrate_ylr017w_1_factor).
has_representation(trial_on_rich_growthrate_ylr017w_1_factor,'presence or absence of ylr017w').
has_input(trial_on_rich_growthrate_ylr017w_1,trial_on_rich_growthrate_ylr017w_1_data).
data(trial_on_rich_growthrate_ylr017w_1_data).
has_part(trial_on_rich_growthrate_ylr017w_1_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_ylr017w_1_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_ylr017w_1_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_ylr017w_1,'jan07-single_expt001-plate001').
plate('jan07-single_expt001-plate001').
has_proposition(trial_on_rich_growthrate_ylr017w_1,trial_on_rich_growthrate_ylr017w_1_result).
result(trial_on_rich_growthrate_ylr017w_1_result).
has_part(trial_on_rich_growthrate_ylr017w_1_result,trial_on_rich_growthrate_ylr017w_1_result_1).
has_representation(trial_on_rich_growthrate_ylr017w_1_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_ylr017w_1_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_ylr017w_1_result_1,trial_on_rich_growthrate_ylr017w_1_result_1_proc).
procedure(trial_on_rich_growthrate_ylr017w_1_result_1_proc).
has_representation(trial_on_rich_growthrate_ylr017w_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ylr017w_1_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_ylr017w_1_result,trial_on_rich_growthrate_ylr017w_1_result_2).
has_representation(trial_on_rich_growthrate_ylr017w_1_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_ylr017w_1_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_ylr017w_1_result_2,trial_on_rich_growthrate_ylr017w_1_result_2_proc).
procedure(trial_on_rich_growthrate_ylr017w_1_result_2_proc).
has_representation(trial_on_rich_growthrate_ylr017w_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ylr017w_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_ylr017w_2,trial_on_rich_growthrate_ylr017w_2_design).
design(trial_on_rich_growthrate_ylr017w_2_design).
has_proposition(trial_on_rich_growthrate_ylr017w_2_design,trial_on_rich_growthrate_ylr017w_2_factor).
factor(trial_on_rich_growthrate_ylr017w_2_factor).
has_representation(trial_on_rich_growthrate_ylr017w_2_factor,'presence or absence of ylr017w').
has_input(trial_on_rich_growthrate_ylr017w_2,trial_on_rich_growthrate_ylr017w_2_data).
data(trial_on_rich_growthrate_ylr017w_2_data).
has_part(trial_on_rich_growthrate_ylr017w_2_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_ylr017w_2_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_ylr017w_2_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_ylr017w_2,'jan07-single2_expt001-plate001').
plate('jan07-single2_expt001-plate001').
has_proposition(trial_on_rich_growthrate_ylr017w_2,trial_on_rich_growthrate_ylr017w_2_result).
result(trial_on_rich_growthrate_ylr017w_2_result).
has_part(trial_on_rich_growthrate_ylr017w_2_result,trial_on_rich_growthrate_ylr017w_2_result_1).
has_representation(trial_on_rich_growthrate_ylr017w_2_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_ylr017w_2_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_ylr017w_2_result_1,trial_on_rich_growthrate_ylr017w_2_result_1_proc).
procedure(trial_on_rich_growthrate_ylr017w_2_result_1_proc).
has_representation(trial_on_rich_growthrate_ylr017w_2_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ylr017w_2_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_ylr017w_2_result,trial_on_rich_growthrate_ylr017w_2_result_2).
has_representation(trial_on_rich_growthrate_ylr017w_2_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_ylr017w_2_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_ylr017w_2_result_2,trial_on_rich_growthrate_ylr017w_2_result_2_proc).
procedure(trial_on_rich_growthrate_ylr017w_2_result_2_proc).
has_representation(trial_on_rich_growthrate_ylr017w_2_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ylr017w_2_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_ylr017w_3,trial_on_rich_growthrate_ylr017w_3_design).
design(trial_on_rich_growthrate_ylr017w_3_design).
has_proposition(trial_on_rich_growthrate_ylr017w_3_design,trial_on_rich_growthrate_ylr017w_3_factor).
factor(trial_on_rich_growthrate_ylr017w_3_factor).
has_representation(trial_on_rich_growthrate_ylr017w_3_factor,'presence or absence of ylr017w').
has_input(trial_on_rich_growthrate_ylr017w_3,trial_on_rich_growthrate_ylr017w_3_data).
data(trial_on_rich_growthrate_ylr017w_3_data).
has_part(trial_on_rich_growthrate_ylr017w_3_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_ylr017w_3_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_ylr017w_3_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_ylr017w_3,'jan07-trial1_expt001-plate004').
plate('jan07-trial1_expt001-plate004').
has_proposition(trial_on_rich_growthrate_ylr017w_3,trial_on_rich_growthrate_ylr017w_3_result).
result(trial_on_rich_growthrate_ylr017w_3_result).
has_part(trial_on_rich_growthrate_ylr017w_3_result,trial_on_rich_growthrate_ylr017w_3_result_1).
has_representation(trial_on_rich_growthrate_ylr017w_3_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_ylr017w_3_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_ylr017w_3_result_1,trial_on_rich_growthrate_ylr017w_3_result_1_proc).
procedure(trial_on_rich_growthrate_ylr017w_3_result_1_proc).
has_representation(trial_on_rich_growthrate_ylr017w_3_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ylr017w_3_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_ylr017w_3_result,trial_on_rich_growthrate_ylr017w_3_result_2).
has_representation(trial_on_rich_growthrate_ylr017w_3_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_ylr017w_3_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_ylr017w_3_result_2,trial_on_rich_growthrate_ylr017w_3_result_2_proc).
procedure(trial_on_rich_growthrate_ylr017w_3_result_2_proc).
has_representation(trial_on_rich_growthrate_ylr017w_3_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ylr017w_3_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_ylr017w_4,trial_on_rich_growthrate_ylr017w_4_design).
design(trial_on_rich_growthrate_ylr017w_4_design).
has_proposition(trial_on_rich_growthrate_ylr017w_4_design,trial_on_rich_growthrate_ylr017w_4_factor).
factor(trial_on_rich_growthrate_ylr017w_4_factor).
has_representation(trial_on_rich_growthrate_ylr017w_4_factor,'presence or absence of ylr017w').
has_input(trial_on_rich_growthrate_ylr017w_4,trial_on_rich_growthrate_ylr017w_4_data).
data(trial_on_rich_growthrate_ylr017w_4_data).
has_part(trial_on_rich_growthrate_ylr017w_4_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_ylr017w_4_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_ylr017w_4_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_ylr017w_4,'jan07-trial1_expt001-plate006').
plate('jan07-trial1_expt001-plate006').
has_proposition(trial_on_rich_growthrate_ylr017w_4,trial_on_rich_growthrate_ylr017w_4_result).
result(trial_on_rich_growthrate_ylr017w_4_result).
has_part(trial_on_rich_growthrate_ylr017w_4_result,trial_on_rich_growthrate_ylr017w_4_result_1).
has_representation(trial_on_rich_growthrate_ylr017w_4_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_ylr017w_4_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_ylr017w_4_result_1,trial_on_rich_growthrate_ylr017w_4_result_1_proc).
procedure(trial_on_rich_growthrate_ylr017w_4_result_1_proc).
has_representation(trial_on_rich_growthrate_ylr017w_4_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ylr017w_4_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_ylr017w_4_result,trial_on_rich_growthrate_ylr017w_4_result_2).
has_representation(trial_on_rich_growthrate_ylr017w_4_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_ylr017w_4_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_ylr017w_4_result_2,trial_on_rich_growthrate_ylr017w_4_result_2_proc).
procedure(trial_on_rich_growthrate_ylr017w_4_result_2_proc).
has_representation(trial_on_rich_growthrate_ylr017w_4_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ylr017w_4_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_ylr017w_5,trial_on_rich_growthrate_ylr017w_5_design).
design(trial_on_rich_growthrate_ylr017w_5_design).
has_proposition(trial_on_rich_growthrate_ylr017w_5_design,trial_on_rich_growthrate_ylr017w_5_factor).
factor(trial_on_rich_growthrate_ylr017w_5_factor).
has_representation(trial_on_rich_growthrate_ylr017w_5_factor,'presence or absence of ylr017w').
has_input(trial_on_rich_growthrate_ylr017w_5,trial_on_rich_growthrate_ylr017w_5_data).
data(trial_on_rich_growthrate_ylr017w_5_data).
has_part(trial_on_rich_growthrate_ylr017w_5_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_ylr017w_5_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_ylr017w_5_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_ylr017w_5,'jan07-trial1_expt001-plate007').
plate('jan07-trial1_expt001-plate007').
has_proposition(trial_on_rich_growthrate_ylr017w_5,trial_on_rich_growthrate_ylr017w_5_result).
result(trial_on_rich_growthrate_ylr017w_5_result).
has_part(trial_on_rich_growthrate_ylr017w_5_result,trial_on_rich_growthrate_ylr017w_5_result_1).
has_representation(trial_on_rich_growthrate_ylr017w_5_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_ylr017w_5_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_ylr017w_5_result_1,trial_on_rich_growthrate_ylr017w_5_result_1_proc).
procedure(trial_on_rich_growthrate_ylr017w_5_result_1_proc).
has_representation(trial_on_rich_growthrate_ylr017w_5_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ylr017w_5_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_ylr017w_5_result,trial_on_rich_growthrate_ylr017w_5_result_2).
has_representation(trial_on_rich_growthrate_ylr017w_5_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_ylr017w_5_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_ylr017w_5_result_2,trial_on_rich_growthrate_ylr017w_5_result_2_proc).
procedure(trial_on_rich_growthrate_ylr017w_5_result_2_proc).
has_representation(trial_on_rich_growthrate_ylr017w_5_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ylr017w_5_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_ylr017w_6,trial_on_rich_growthrate_ylr017w_6_design).
design(trial_on_rich_growthrate_ylr017w_6_design).
has_proposition(trial_on_rich_growthrate_ylr017w_6_design,trial_on_rich_growthrate_ylr017w_6_factor).
factor(trial_on_rich_growthrate_ylr017w_6_factor).
has_representation(trial_on_rich_growthrate_ylr017w_6_factor,'presence or absence of ylr017w').
has_input(trial_on_rich_growthrate_ylr017w_6,trial_on_rich_growthrate_ylr017w_6_data).
data(trial_on_rich_growthrate_ylr017w_6_data).
has_part(trial_on_rich_growthrate_ylr017w_6_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_ylr017w_6_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_ylr017w_6_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_ylr017w_6,'jan07-trial1_expt001-plate011').
plate('jan07-trial1_expt001-plate011').
has_proposition(trial_on_rich_growthrate_ylr017w_6,trial_on_rich_growthrate_ylr017w_6_result).
result(trial_on_rich_growthrate_ylr017w_6_result).
has_part(trial_on_rich_growthrate_ylr017w_6_result,trial_on_rich_growthrate_ylr017w_6_result_1).
has_representation(trial_on_rich_growthrate_ylr017w_6_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_ylr017w_6_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_ylr017w_6_result_1,trial_on_rich_growthrate_ylr017w_6_result_1_proc).
procedure(trial_on_rich_growthrate_ylr017w_6_result_1_proc).
has_representation(trial_on_rich_growthrate_ylr017w_6_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ylr017w_6_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_ylr017w_6_result,trial_on_rich_growthrate_ylr017w_6_result_2).
has_representation(trial_on_rich_growthrate_ylr017w_6_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_ylr017w_6_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_ylr017w_6_result_2,trial_on_rich_growthrate_ylr017w_6_result_2_proc).
procedure(trial_on_rich_growthrate_ylr017w_6_result_2_proc).
has_representation(trial_on_rich_growthrate_ylr017w_6_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ylr017w_6_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_ylr017w_7,trial_on_rich_growthrate_ylr017w_7_design).
design(trial_on_rich_growthrate_ylr017w_7_design).
has_proposition(trial_on_rich_growthrate_ylr017w_7_design,trial_on_rich_growthrate_ylr017w_7_factor).
factor(trial_on_rich_growthrate_ylr017w_7_factor).
has_representation(trial_on_rich_growthrate_ylr017w_7_factor,'presence or absence of ylr017w').
has_input(trial_on_rich_growthrate_ylr017w_7,trial_on_rich_growthrate_ylr017w_7_data).
data(trial_on_rich_growthrate_ylr017w_7_data).
has_part(trial_on_rich_growthrate_ylr017w_7_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_ylr017w_7_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_ylr017w_7_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_ylr017w_7,'mar07-trial1_expt001-plate003').
plate('mar07-trial1_expt001-plate003').
has_proposition(trial_on_rich_growthrate_ylr017w_7,trial_on_rich_growthrate_ylr017w_7_result).
result(trial_on_rich_growthrate_ylr017w_7_result).
has_part(trial_on_rich_growthrate_ylr017w_7_result,trial_on_rich_growthrate_ylr017w_7_result_1).
has_representation(trial_on_rich_growthrate_ylr017w_7_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_ylr017w_7_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_ylr017w_7_result_1,trial_on_rich_growthrate_ylr017w_7_result_1_proc).
procedure(trial_on_rich_growthrate_ylr017w_7_result_1_proc).
has_representation(trial_on_rich_growthrate_ylr017w_7_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ylr017w_7_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_ylr017w_7_result,trial_on_rich_growthrate_ylr017w_7_result_2).
has_representation(trial_on_rich_growthrate_ylr017w_7_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_ylr017w_7_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_ylr017w_7_result_2,trial_on_rich_growthrate_ylr017w_7_result_2_proc).
procedure(trial_on_rich_growthrate_ylr017w_7_result_2_proc).
has_representation(trial_on_rich_growthrate_ylr017w_7_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ylr017w_7_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_ylr017w_8,trial_on_rich_growthrate_ylr017w_8_design).
design(trial_on_rich_growthrate_ylr017w_8_design).
has_proposition(trial_on_rich_growthrate_ylr017w_8_design,trial_on_rich_growthrate_ylr017w_8_factor).
factor(trial_on_rich_growthrate_ylr017w_8_factor).
has_representation(trial_on_rich_growthrate_ylr017w_8_factor,'presence or absence of ylr017w').
has_input(trial_on_rich_growthrate_ylr017w_8,trial_on_rich_growthrate_ylr017w_8_data).
data(trial_on_rich_growthrate_ylr017w_8_data).
has_part(trial_on_rich_growthrate_ylr017w_8_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_ylr017w_8_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_ylr017w_8_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_ylr017w_8,'mar07-trial1_expt001-plate004').
plate('mar07-trial1_expt001-plate004').
has_proposition(trial_on_rich_growthrate_ylr017w_8,trial_on_rich_growthrate_ylr017w_8_result).
result(trial_on_rich_growthrate_ylr017w_8_result).
has_part(trial_on_rich_growthrate_ylr017w_8_result,trial_on_rich_growthrate_ylr017w_8_result_1).
has_representation(trial_on_rich_growthrate_ylr017w_8_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_ylr017w_8_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_ylr017w_8_result_1,trial_on_rich_growthrate_ylr017w_8_result_1_proc).
procedure(trial_on_rich_growthrate_ylr017w_8_result_1_proc).
has_representation(trial_on_rich_growthrate_ylr017w_8_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ylr017w_8_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_ylr017w_8_result,trial_on_rich_growthrate_ylr017w_8_result_2).
has_representation(trial_on_rich_growthrate_ylr017w_8_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_ylr017w_8_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_ylr017w_8_result_2,trial_on_rich_growthrate_ylr017w_8_result_2_proc).
procedure(trial_on_rich_growthrate_ylr017w_8_result_2_proc).
has_representation(trial_on_rich_growthrate_ylr017w_8_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ylr017w_8_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_ylr017w,trial_on_rich_growthrate_ylr017w_results).
result(trial_on_rich_growthrate_ylr017w_results).
has_part(trial_on_rich_growthrate_ylr017w_results,trial_on_rich_growthrate_ylr017w_results_1).
has_representation(trial_on_rich_growthrate_ylr017w_results_1,'median of knockout medians missing ylr017w').
text_representation('median of knockout medians missing ylr017w').
has_proposition(trial_on_rich_growthrate_ylr017w_results_1,trial_on_rich_growthrate_ylr017w_results_1_proc).
procedure(trial_on_rich_growthrate_ylr017w_results_1_proc).
has_proposition(trial_on_rich_growthrate_ylr017w_results_1_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_rich_growthrate_ylr017w_results,trial_on_rich_growthrate_ylr017w_results_2).
has_representation(trial_on_rich_growthrate_ylr017w_results_2,'median of wild type medians').
text_representation('median of wild type medians').
has_proposition(trial_on_rich_growthrate_ylr017w_results_2,trial_on_rich_growthrate_ylr017w_results_2_proc).
procedure(trial_on_rich_growthrate_ylr017w_results_2_proc).
has_proposition(trial_on_rich_growthrate_ylr017w_results_2_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_rich_growthrate_ylr017w_results,trial_on_rich_growthrate_ylr017w_results_3).
has_representation(trial_on_rich_growthrate_ylr017w_results_3,'difference between trial_on_rich_growthrate_ylr017w_results_1 and trial_on_rich_growthrate_ylr017w_results_2').
text_representation('difference between trial_on_rich_growthrate_ylr017w_results_1 and trial_on_rich_growthrate_ylr017w_results_2').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_result).
result(study_on_rich_growthrate_result).
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_1).
has_representation(study_on_rich_growthrate_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_rich_growthrate_result_1,'results/wr_kr_growth_rate.csv').
link('results/wr_kr_growth_rate.csv').
has_proposition(study_on_rich_growthrate_result_1,study_on_rich_growthrate_result_1_proc).
procedure(study_on_rich_growthrate_result_1_proc).
has_proposition(study_on_rich_growthrate_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_2).
has_representation(study_on_rich_growthrate_result_2,'bar graph (histogram) plotting study_on_rich_growthrate_result_1').
text_representation('bar graph (histogram) plotting study_on_rich_growthrate_result_1').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate1.tiff').
link('results/kr_wr_growth_rate1.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate2.tiff').
link('results/kr_wr_growth_rate2.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/overlayed_growth_rate.tiff').
link('results/overlayed_growth_rate.tiff').
has_proposition(study_on_rich_growthrate_result_2,study_on_rich_growthrate_result_2_proc).
procedure(study_on_rich_growthrate_result_2_proc).
has_proposition(study_on_rich_growthrate_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_conclusion).
conclusion(study_on_rich_growthrate_conclusion).
has_representation(study_on_rich_growthrate_conclusion,'The knockouts have higher growth rate in rich than the wild type').
text_representation('The knockouts have higher growth rate in rich than the wild type').
has_proposition(study_on_rich_growthrate_conclusion,'obtain statistical mode of study_on_rich_growthrate_result_1').
procedure('obtain statistical mode of study_on_rich_growthrate_result_1').
text_representation('obtain statistical mode of study_on_rich_growthrate_result_1').
has_part(study_on_rich_growthrate,trial_on_rich_growthrate_rsyd000004).
trial(trial_on_rich_growthrate_rsyd000004).
has_agent(trial_on_rich_growthrate_rsyd000004,rsyd000004).
strain(rsyd000004).
has_proposition(trial_on_rich_growthrate_rsyd000004_1,trial_on_rich_growthrate_rsyd000004_1_design).
design(trial_on_rich_growthrate_rsyd000004_1_design).
has_proposition(trial_on_rich_growthrate_rsyd000004_1_design,trial_on_rich_growthrate_rsyd000004_1_factor).
factor(trial_on_rich_growthrate_rsyd000004_1_factor).
has_representation(trial_on_rich_growthrate_rsyd000004_1_factor,'presence or absence of rsyd000004').
has_input(trial_on_rich_growthrate_rsyd000004_1,trial_on_rich_growthrate_rsyd000004_1_data).
data(trial_on_rich_growthrate_rsyd000004_1_data).
has_part(trial_on_rich_growthrate_rsyd000004_1_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_rsyd000004_1_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_rsyd000004_1_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_rsyd000004_1,'trial-130407_expt001-plate001').
plate('trial-130407_expt001-plate001').
has_proposition(trial_on_rich_growthrate_rsyd000004_1,trial_on_rich_growthrate_rsyd000004_1_result).
result(trial_on_rich_growthrate_rsyd000004_1_result).
has_part(trial_on_rich_growthrate_rsyd000004_1_result,trial_on_rich_growthrate_rsyd000004_1_result_1).
has_representation(trial_on_rich_growthrate_rsyd000004_1_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_rsyd000004_1_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_rsyd000004_1_result_1,trial_on_rich_growthrate_rsyd000004_1_result_1_proc).
procedure(trial_on_rich_growthrate_rsyd000004_1_result_1_proc).
has_representation(trial_on_rich_growthrate_rsyd000004_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_rsyd000004_1_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_rsyd000004_1_result,trial_on_rich_growthrate_rsyd000004_1_result_2).
has_representation(trial_on_rich_growthrate_rsyd000004_1_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_rsyd000004_1_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_rsyd000004_1_result_2,trial_on_rich_growthrate_rsyd000004_1_result_2_proc).
procedure(trial_on_rich_growthrate_rsyd000004_1_result_2_proc).
has_representation(trial_on_rich_growthrate_rsyd000004_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_rsyd000004_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_rsyd000004_2,trial_on_rich_growthrate_rsyd000004_2_design).
design(trial_on_rich_growthrate_rsyd000004_2_design).
has_proposition(trial_on_rich_growthrate_rsyd000004_2_design,trial_on_rich_growthrate_rsyd000004_2_factor).
factor(trial_on_rich_growthrate_rsyd000004_2_factor).
has_representation(trial_on_rich_growthrate_rsyd000004_2_factor,'presence or absence of rsyd000004').
has_input(trial_on_rich_growthrate_rsyd000004_2,trial_on_rich_growthrate_rsyd000004_2_data).
data(trial_on_rich_growthrate_rsyd000004_2_data).
has_part(trial_on_rich_growthrate_rsyd000004_2_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_rsyd000004_2_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_rsyd000004_2_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_rsyd000004_2,'trial-130407_expt001-plate002').
plate('trial-130407_expt001-plate002').
has_proposition(trial_on_rich_growthrate_rsyd000004_2,trial_on_rich_growthrate_rsyd000004_2_result).
result(trial_on_rich_growthrate_rsyd000004_2_result).
has_part(trial_on_rich_growthrate_rsyd000004_2_result,trial_on_rich_growthrate_rsyd000004_2_result_1).
has_representation(trial_on_rich_growthrate_rsyd000004_2_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_rsyd000004_2_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_rsyd000004_2_result_1,trial_on_rich_growthrate_rsyd000004_2_result_1_proc).
procedure(trial_on_rich_growthrate_rsyd000004_2_result_1_proc).
has_representation(trial_on_rich_growthrate_rsyd000004_2_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_rsyd000004_2_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_rsyd000004_2_result,trial_on_rich_growthrate_rsyd000004_2_result_2).
has_representation(trial_on_rich_growthrate_rsyd000004_2_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_rsyd000004_2_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_rsyd000004_2_result_2,trial_on_rich_growthrate_rsyd000004_2_result_2_proc).
procedure(trial_on_rich_growthrate_rsyd000004_2_result_2_proc).
has_representation(trial_on_rich_growthrate_rsyd000004_2_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_rsyd000004_2_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_rsyd000004_3,trial_on_rich_growthrate_rsyd000004_3_design).
design(trial_on_rich_growthrate_rsyd000004_3_design).
has_proposition(trial_on_rich_growthrate_rsyd000004_3_design,trial_on_rich_growthrate_rsyd000004_3_factor).
factor(trial_on_rich_growthrate_rsyd000004_3_factor).
has_representation(trial_on_rich_growthrate_rsyd000004_3_factor,'presence or absence of rsyd000004').
has_input(trial_on_rich_growthrate_rsyd000004_3,trial_on_rich_growthrate_rsyd000004_3_data).
data(trial_on_rich_growthrate_rsyd000004_3_data).
has_part(trial_on_rich_growthrate_rsyd000004_3_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_rsyd000004_3_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_rsyd000004_3_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_rsyd000004_3,'trial-130407_expt001-plate003').
plate('trial-130407_expt001-plate003').
has_proposition(trial_on_rich_growthrate_rsyd000004_3,trial_on_rich_growthrate_rsyd000004_3_result).
result(trial_on_rich_growthrate_rsyd000004_3_result).
has_part(trial_on_rich_growthrate_rsyd000004_3_result,trial_on_rich_growthrate_rsyd000004_3_result_1).
has_representation(trial_on_rich_growthrate_rsyd000004_3_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_rsyd000004_3_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_rsyd000004_3_result_1,trial_on_rich_growthrate_rsyd000004_3_result_1_proc).
procedure(trial_on_rich_growthrate_rsyd000004_3_result_1_proc).
has_representation(trial_on_rich_growthrate_rsyd000004_3_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_rsyd000004_3_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_rsyd000004_3_result,trial_on_rich_growthrate_rsyd000004_3_result_2).
has_representation(trial_on_rich_growthrate_rsyd000004_3_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_rsyd000004_3_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_rsyd000004_3_result_2,trial_on_rich_growthrate_rsyd000004_3_result_2_proc).
procedure(trial_on_rich_growthrate_rsyd000004_3_result_2_proc).
has_representation(trial_on_rich_growthrate_rsyd000004_3_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_rsyd000004_3_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_rsyd000004,trial_on_rich_growthrate_rsyd000004_results).
result(trial_on_rich_growthrate_rsyd000004_results).
has_part(trial_on_rich_growthrate_rsyd000004_results,trial_on_rich_growthrate_rsyd000004_results_1).
has_representation(trial_on_rich_growthrate_rsyd000004_results_1,'median of knockout medians missing rsyd000004').
text_representation('median of knockout medians missing rsyd000004').
has_proposition(trial_on_rich_growthrate_rsyd000004_results_1,trial_on_rich_growthrate_rsyd000004_results_1_proc).
procedure(trial_on_rich_growthrate_rsyd000004_results_1_proc).
has_proposition(trial_on_rich_growthrate_rsyd000004_results_1_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_rich_growthrate_rsyd000004_results,trial_on_rich_growthrate_rsyd000004_results_2).
has_representation(trial_on_rich_growthrate_rsyd000004_results_2,'median of wild type medians').
text_representation('median of wild type medians').
has_proposition(trial_on_rich_growthrate_rsyd000004_results_2,trial_on_rich_growthrate_rsyd000004_results_2_proc).
procedure(trial_on_rich_growthrate_rsyd000004_results_2_proc).
has_proposition(trial_on_rich_growthrate_rsyd000004_results_2_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_rich_growthrate_rsyd000004_results,trial_on_rich_growthrate_rsyd000004_results_3).
has_representation(trial_on_rich_growthrate_rsyd000004_results_3,'difference between trial_on_rich_growthrate_rsyd000004_results_1 and trial_on_rich_growthrate_rsyd000004_results_2').
text_representation('difference between trial_on_rich_growthrate_rsyd000004_results_1 and trial_on_rich_growthrate_rsyd000004_results_2').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_result).
result(study_on_rich_growthrate_result).
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_1).
has_representation(study_on_rich_growthrate_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_rich_growthrate_result_1,'results/wr_kr_growth_rate.csv').
link('results/wr_kr_growth_rate.csv').
has_proposition(study_on_rich_growthrate_result_1,study_on_rich_growthrate_result_1_proc).
procedure(study_on_rich_growthrate_result_1_proc).
has_proposition(study_on_rich_growthrate_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_2).
has_representation(study_on_rich_growthrate_result_2,'bar graph (histogram) plotting study_on_rich_growthrate_result_1').
text_representation('bar graph (histogram) plotting study_on_rich_growthrate_result_1').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate1.tiff').
link('results/kr_wr_growth_rate1.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate2.tiff').
link('results/kr_wr_growth_rate2.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/overlayed_growth_rate.tiff').
link('results/overlayed_growth_rate.tiff').
has_proposition(study_on_rich_growthrate_result_2,study_on_rich_growthrate_result_2_proc).
procedure(study_on_rich_growthrate_result_2_proc).
has_proposition(study_on_rich_growthrate_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_conclusion).
conclusion(study_on_rich_growthrate_conclusion).
has_representation(study_on_rich_growthrate_conclusion,'The knockouts have higher growth rate in rich than the wild type').
text_representation('The knockouts have higher growth rate in rich than the wild type').
has_proposition(study_on_rich_growthrate_conclusion,'obtain statistical mode of study_on_rich_growthrate_result_1').
procedure('obtain statistical mode of study_on_rich_growthrate_result_1').
text_representation('obtain statistical mode of study_on_rich_growthrate_result_1').
has_part(study_on_rich_growthrate,trial_on_rich_growthrate_rsyd000005).
trial(trial_on_rich_growthrate_rsyd000005).
has_agent(trial_on_rich_growthrate_rsyd000005,rsyd000005).
strain(rsyd000005).
has_proposition(trial_on_rich_growthrate_rsyd000005_1,trial_on_rich_growthrate_rsyd000005_1_design).
design(trial_on_rich_growthrate_rsyd000005_1_design).
has_proposition(trial_on_rich_growthrate_rsyd000005_1_design,trial_on_rich_growthrate_rsyd000005_1_factor).
factor(trial_on_rich_growthrate_rsyd000005_1_factor).
has_representation(trial_on_rich_growthrate_rsyd000005_1_factor,'presence or absence of rsyd000005').
has_input(trial_on_rich_growthrate_rsyd000005_1,trial_on_rich_growthrate_rsyd000005_1_data).
data(trial_on_rich_growthrate_rsyd000005_1_data).
has_part(trial_on_rich_growthrate_rsyd000005_1_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_rsyd000005_1_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_rsyd000005_1_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_rsyd000005_1,'trial-130407_expt001-plate004').
plate('trial-130407_expt001-plate004').
has_proposition(trial_on_rich_growthrate_rsyd000005_1,trial_on_rich_growthrate_rsyd000005_1_result).
result(trial_on_rich_growthrate_rsyd000005_1_result).
has_part(trial_on_rich_growthrate_rsyd000005_1_result,trial_on_rich_growthrate_rsyd000005_1_result_1).
has_representation(trial_on_rich_growthrate_rsyd000005_1_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_rsyd000005_1_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_rsyd000005_1_result_1,trial_on_rich_growthrate_rsyd000005_1_result_1_proc).
procedure(trial_on_rich_growthrate_rsyd000005_1_result_1_proc).
has_representation(trial_on_rich_growthrate_rsyd000005_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_rsyd000005_1_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_rsyd000005_1_result,trial_on_rich_growthrate_rsyd000005_1_result_2).
has_representation(trial_on_rich_growthrate_rsyd000005_1_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_rsyd000005_1_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_rsyd000005_1_result_2,trial_on_rich_growthrate_rsyd000005_1_result_2_proc).
procedure(trial_on_rich_growthrate_rsyd000005_1_result_2_proc).
has_representation(trial_on_rich_growthrate_rsyd000005_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_rsyd000005_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_rsyd000005_2,trial_on_rich_growthrate_rsyd000005_2_design).
design(trial_on_rich_growthrate_rsyd000005_2_design).
has_proposition(trial_on_rich_growthrate_rsyd000005_2_design,trial_on_rich_growthrate_rsyd000005_2_factor).
factor(trial_on_rich_growthrate_rsyd000005_2_factor).
has_representation(trial_on_rich_growthrate_rsyd000005_2_factor,'presence or absence of rsyd000005').
has_input(trial_on_rich_growthrate_rsyd000005_2,trial_on_rich_growthrate_rsyd000005_2_data).
data(trial_on_rich_growthrate_rsyd000005_2_data).
has_part(trial_on_rich_growthrate_rsyd000005_2_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_rsyd000005_2_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_rsyd000005_2_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_rsyd000005_2,'trial-130407_expt001-plate005').
plate('trial-130407_expt001-plate005').
has_proposition(trial_on_rich_growthrate_rsyd000005_2,trial_on_rich_growthrate_rsyd000005_2_result).
result(trial_on_rich_growthrate_rsyd000005_2_result).
has_part(trial_on_rich_growthrate_rsyd000005_2_result,trial_on_rich_growthrate_rsyd000005_2_result_1).
has_representation(trial_on_rich_growthrate_rsyd000005_2_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_rsyd000005_2_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_rsyd000005_2_result_1,trial_on_rich_growthrate_rsyd000005_2_result_1_proc).
procedure(trial_on_rich_growthrate_rsyd000005_2_result_1_proc).
has_representation(trial_on_rich_growthrate_rsyd000005_2_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_rsyd000005_2_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_rsyd000005_2_result,trial_on_rich_growthrate_rsyd000005_2_result_2).
has_representation(trial_on_rich_growthrate_rsyd000005_2_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_rsyd000005_2_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_rsyd000005_2_result_2,trial_on_rich_growthrate_rsyd000005_2_result_2_proc).
procedure(trial_on_rich_growthrate_rsyd000005_2_result_2_proc).
has_representation(trial_on_rich_growthrate_rsyd000005_2_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_rsyd000005_2_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_rsyd000005_3,trial_on_rich_growthrate_rsyd000005_3_design).
design(trial_on_rich_growthrate_rsyd000005_3_design).
has_proposition(trial_on_rich_growthrate_rsyd000005_3_design,trial_on_rich_growthrate_rsyd000005_3_factor).
factor(trial_on_rich_growthrate_rsyd000005_3_factor).
has_representation(trial_on_rich_growthrate_rsyd000005_3_factor,'presence or absence of rsyd000005').
has_input(trial_on_rich_growthrate_rsyd000005_3,trial_on_rich_growthrate_rsyd000005_3_data).
data(trial_on_rich_growthrate_rsyd000005_3_data).
has_part(trial_on_rich_growthrate_rsyd000005_3_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_rsyd000005_3_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_rsyd000005_3_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_rsyd000005_3,'trial-130407_expt001-plate006').
plate('trial-130407_expt001-plate006').
has_proposition(trial_on_rich_growthrate_rsyd000005_3,trial_on_rich_growthrate_rsyd000005_3_result).
result(trial_on_rich_growthrate_rsyd000005_3_result).
has_part(trial_on_rich_growthrate_rsyd000005_3_result,trial_on_rich_growthrate_rsyd000005_3_result_1).
has_representation(trial_on_rich_growthrate_rsyd000005_3_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_rsyd000005_3_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_rsyd000005_3_result_1,trial_on_rich_growthrate_rsyd000005_3_result_1_proc).
procedure(trial_on_rich_growthrate_rsyd000005_3_result_1_proc).
has_representation(trial_on_rich_growthrate_rsyd000005_3_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_rsyd000005_3_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_rsyd000005_3_result,trial_on_rich_growthrate_rsyd000005_3_result_2).
has_representation(trial_on_rich_growthrate_rsyd000005_3_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_rsyd000005_3_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_rsyd000005_3_result_2,trial_on_rich_growthrate_rsyd000005_3_result_2_proc).
procedure(trial_on_rich_growthrate_rsyd000005_3_result_2_proc).
has_representation(trial_on_rich_growthrate_rsyd000005_3_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_rsyd000005_3_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_rsyd000005,trial_on_rich_growthrate_rsyd000005_results).
result(trial_on_rich_growthrate_rsyd000005_results).
has_part(trial_on_rich_growthrate_rsyd000005_results,trial_on_rich_growthrate_rsyd000005_results_1).
has_representation(trial_on_rich_growthrate_rsyd000005_results_1,'median of knockout medians missing rsyd000005').
text_representation('median of knockout medians missing rsyd000005').
has_proposition(trial_on_rich_growthrate_rsyd000005_results_1,trial_on_rich_growthrate_rsyd000005_results_1_proc).
procedure(trial_on_rich_growthrate_rsyd000005_results_1_proc).
has_proposition(trial_on_rich_growthrate_rsyd000005_results_1_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_rich_growthrate_rsyd000005_results,trial_on_rich_growthrate_rsyd000005_results_2).
has_representation(trial_on_rich_growthrate_rsyd000005_results_2,'median of wild type medians').
text_representation('median of wild type medians').
has_proposition(trial_on_rich_growthrate_rsyd000005_results_2,trial_on_rich_growthrate_rsyd000005_results_2_proc).
procedure(trial_on_rich_growthrate_rsyd000005_results_2_proc).
has_proposition(trial_on_rich_growthrate_rsyd000005_results_2_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_rich_growthrate_rsyd000005_results,trial_on_rich_growthrate_rsyd000005_results_3).
has_representation(trial_on_rich_growthrate_rsyd000005_results_3,'difference between trial_on_rich_growthrate_rsyd000005_results_1 and trial_on_rich_growthrate_rsyd000005_results_2').
text_representation('difference between trial_on_rich_growthrate_rsyd000005_results_1 and trial_on_rich_growthrate_rsyd000005_results_2').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_result).
result(study_on_rich_growthrate_result).
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_1).
has_representation(study_on_rich_growthrate_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_rich_growthrate_result_1,'results/wr_kr_growth_rate.csv').
link('results/wr_kr_growth_rate.csv').
has_proposition(study_on_rich_growthrate_result_1,study_on_rich_growthrate_result_1_proc).
procedure(study_on_rich_growthrate_result_1_proc).
has_proposition(study_on_rich_growthrate_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_2).
has_representation(study_on_rich_growthrate_result_2,'bar graph (histogram) plotting study_on_rich_growthrate_result_1').
text_representation('bar graph (histogram) plotting study_on_rich_growthrate_result_1').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate1.tiff').
link('results/kr_wr_growth_rate1.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate2.tiff').
link('results/kr_wr_growth_rate2.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/overlayed_growth_rate.tiff').
link('results/overlayed_growth_rate.tiff').
has_proposition(study_on_rich_growthrate_result_2,study_on_rich_growthrate_result_2_proc).
procedure(study_on_rich_growthrate_result_2_proc).
has_proposition(study_on_rich_growthrate_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_conclusion).
conclusion(study_on_rich_growthrate_conclusion).
has_representation(study_on_rich_growthrate_conclusion,'The knockouts have higher growth rate in rich than the wild type').
text_representation('The knockouts have higher growth rate in rich than the wild type').
has_proposition(study_on_rich_growthrate_conclusion,'obtain statistical mode of study_on_rich_growthrate_result_1').
procedure('obtain statistical mode of study_on_rich_growthrate_result_1').
text_representation('obtain statistical mode of study_on_rich_growthrate_result_1').
has_part(study_on_rich_growthrate,trial_on_rich_growthrate_ynr073c).
trial(trial_on_rich_growthrate_ynr073c).
has_agent(trial_on_rich_growthrate_ynr073c,ynr073c).
strain(ynr073c).
has_proposition(trial_on_rich_growthrate_ynr073c_1,trial_on_rich_growthrate_ynr073c_1_design).
design(trial_on_rich_growthrate_ynr073c_1_design).
has_proposition(trial_on_rich_growthrate_ynr073c_1_design,trial_on_rich_growthrate_ynr073c_1_factor).
factor(trial_on_rich_growthrate_ynr073c_1_factor).
has_representation(trial_on_rich_growthrate_ynr073c_1_factor,'presence or absence of ynr073c').
has_input(trial_on_rich_growthrate_ynr073c_1,trial_on_rich_growthrate_ynr073c_1_data).
data(trial_on_rich_growthrate_ynr073c_1_data).
has_part(trial_on_rich_growthrate_ynr073c_1_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_ynr073c_1_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_ynr073c_1_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_ynr073c_1,'mar07-trial3_expt001-plate001').
plate('mar07-trial3_expt001-plate001').
has_proposition(trial_on_rich_growthrate_ynr073c_1,trial_on_rich_growthrate_ynr073c_1_result).
result(trial_on_rich_growthrate_ynr073c_1_result).
has_part(trial_on_rich_growthrate_ynr073c_1_result,trial_on_rich_growthrate_ynr073c_1_result_1).
has_representation(trial_on_rich_growthrate_ynr073c_1_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_ynr073c_1_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_ynr073c_1_result_1,trial_on_rich_growthrate_ynr073c_1_result_1_proc).
procedure(trial_on_rich_growthrate_ynr073c_1_result_1_proc).
has_representation(trial_on_rich_growthrate_ynr073c_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ynr073c_1_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_ynr073c_1_result,trial_on_rich_growthrate_ynr073c_1_result_2).
has_representation(trial_on_rich_growthrate_ynr073c_1_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_ynr073c_1_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_ynr073c_1_result_2,trial_on_rich_growthrate_ynr073c_1_result_2_proc).
procedure(trial_on_rich_growthrate_ynr073c_1_result_2_proc).
has_representation(trial_on_rich_growthrate_ynr073c_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ynr073c_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_ynr073c_2,trial_on_rich_growthrate_ynr073c_2_design).
design(trial_on_rich_growthrate_ynr073c_2_design).
has_proposition(trial_on_rich_growthrate_ynr073c_2_design,trial_on_rich_growthrate_ynr073c_2_factor).
factor(trial_on_rich_growthrate_ynr073c_2_factor).
has_representation(trial_on_rich_growthrate_ynr073c_2_factor,'presence or absence of ynr073c').
has_input(trial_on_rich_growthrate_ynr073c_2,trial_on_rich_growthrate_ynr073c_2_data).
data(trial_on_rich_growthrate_ynr073c_2_data).
has_part(trial_on_rich_growthrate_ynr073c_2_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_ynr073c_2_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_ynr073c_2_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_ynr073c_2,'mar07-trial3_expt001-plate002').
plate('mar07-trial3_expt001-plate002').
has_proposition(trial_on_rich_growthrate_ynr073c_2,trial_on_rich_growthrate_ynr073c_2_result).
result(trial_on_rich_growthrate_ynr073c_2_result).
has_part(trial_on_rich_growthrate_ynr073c_2_result,trial_on_rich_growthrate_ynr073c_2_result_1).
has_representation(trial_on_rich_growthrate_ynr073c_2_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_ynr073c_2_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_ynr073c_2_result_1,trial_on_rich_growthrate_ynr073c_2_result_1_proc).
procedure(trial_on_rich_growthrate_ynr073c_2_result_1_proc).
has_representation(trial_on_rich_growthrate_ynr073c_2_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ynr073c_2_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_ynr073c_2_result,trial_on_rich_growthrate_ynr073c_2_result_2).
has_representation(trial_on_rich_growthrate_ynr073c_2_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_ynr073c_2_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_ynr073c_2_result_2,trial_on_rich_growthrate_ynr073c_2_result_2_proc).
procedure(trial_on_rich_growthrate_ynr073c_2_result_2_proc).
has_representation(trial_on_rich_growthrate_ynr073c_2_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ynr073c_2_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_ynr073c_3,trial_on_rich_growthrate_ynr073c_3_design).
design(trial_on_rich_growthrate_ynr073c_3_design).
has_proposition(trial_on_rich_growthrate_ynr073c_3_design,trial_on_rich_growthrate_ynr073c_3_factor).
factor(trial_on_rich_growthrate_ynr073c_3_factor).
has_representation(trial_on_rich_growthrate_ynr073c_3_factor,'presence or absence of ynr073c').
has_input(trial_on_rich_growthrate_ynr073c_3,trial_on_rich_growthrate_ynr073c_3_data).
data(trial_on_rich_growthrate_ynr073c_3_data).
has_part(trial_on_rich_growthrate_ynr073c_3_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_ynr073c_3_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_ynr073c_3_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_ynr073c_3,'mar07-trial3_expt001-plate005').
plate('mar07-trial3_expt001-plate005').
has_proposition(trial_on_rich_growthrate_ynr073c_3,trial_on_rich_growthrate_ynr073c_3_result).
result(trial_on_rich_growthrate_ynr073c_3_result).
has_part(trial_on_rich_growthrate_ynr073c_3_result,trial_on_rich_growthrate_ynr073c_3_result_1).
has_representation(trial_on_rich_growthrate_ynr073c_3_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_ynr073c_3_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_ynr073c_3_result_1,trial_on_rich_growthrate_ynr073c_3_result_1_proc).
procedure(trial_on_rich_growthrate_ynr073c_3_result_1_proc).
has_representation(trial_on_rich_growthrate_ynr073c_3_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ynr073c_3_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_ynr073c_3_result,trial_on_rich_growthrate_ynr073c_3_result_2).
has_representation(trial_on_rich_growthrate_ynr073c_3_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_ynr073c_3_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_ynr073c_3_result_2,trial_on_rich_growthrate_ynr073c_3_result_2_proc).
procedure(trial_on_rich_growthrate_ynr073c_3_result_2_proc).
has_representation(trial_on_rich_growthrate_ynr073c_3_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ynr073c_3_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_ynr073c_4,trial_on_rich_growthrate_ynr073c_4_design).
design(trial_on_rich_growthrate_ynr073c_4_design).
has_proposition(trial_on_rich_growthrate_ynr073c_4_design,trial_on_rich_growthrate_ynr073c_4_factor).
factor(trial_on_rich_growthrate_ynr073c_4_factor).
has_representation(trial_on_rich_growthrate_ynr073c_4_factor,'presence or absence of ynr073c').
has_input(trial_on_rich_growthrate_ynr073c_4,trial_on_rich_growthrate_ynr073c_4_data).
data(trial_on_rich_growthrate_ynr073c_4_data).
has_part(trial_on_rich_growthrate_ynr073c_4_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_ynr073c_4_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_ynr073c_4_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_ynr073c_4,'mar07-trial3_expt001-plate006').
plate('mar07-trial3_expt001-plate006').
has_proposition(trial_on_rich_growthrate_ynr073c_4,trial_on_rich_growthrate_ynr073c_4_result).
result(trial_on_rich_growthrate_ynr073c_4_result).
has_part(trial_on_rich_growthrate_ynr073c_4_result,trial_on_rich_growthrate_ynr073c_4_result_1).
has_representation(trial_on_rich_growthrate_ynr073c_4_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_ynr073c_4_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_ynr073c_4_result_1,trial_on_rich_growthrate_ynr073c_4_result_1_proc).
procedure(trial_on_rich_growthrate_ynr073c_4_result_1_proc).
has_representation(trial_on_rich_growthrate_ynr073c_4_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ynr073c_4_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_ynr073c_4_result,trial_on_rich_growthrate_ynr073c_4_result_2).
has_representation(trial_on_rich_growthrate_ynr073c_4_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_ynr073c_4_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_ynr073c_4_result_2,trial_on_rich_growthrate_ynr073c_4_result_2_proc).
procedure(trial_on_rich_growthrate_ynr073c_4_result_2_proc).
has_representation(trial_on_rich_growthrate_ynr073c_4_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ynr073c_4_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_ynr073c_5,trial_on_rich_growthrate_ynr073c_5_design).
design(trial_on_rich_growthrate_ynr073c_5_design).
has_proposition(trial_on_rich_growthrate_ynr073c_5_design,trial_on_rich_growthrate_ynr073c_5_factor).
factor(trial_on_rich_growthrate_ynr073c_5_factor).
has_representation(trial_on_rich_growthrate_ynr073c_5_factor,'presence or absence of ynr073c').
has_input(trial_on_rich_growthrate_ynr073c_5,trial_on_rich_growthrate_ynr073c_5_data).
data(trial_on_rich_growthrate_ynr073c_5_data).
has_part(trial_on_rich_growthrate_ynr073c_5_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_ynr073c_5_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_ynr073c_5_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_ynr073c_5,'mar07-trial5_expt001-plate004').
plate('mar07-trial5_expt001-plate004').
has_proposition(trial_on_rich_growthrate_ynr073c_5,trial_on_rich_growthrate_ynr073c_5_result).
result(trial_on_rich_growthrate_ynr073c_5_result).
has_part(trial_on_rich_growthrate_ynr073c_5_result,trial_on_rich_growthrate_ynr073c_5_result_1).
has_representation(trial_on_rich_growthrate_ynr073c_5_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_ynr073c_5_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_ynr073c_5_result_1,trial_on_rich_growthrate_ynr073c_5_result_1_proc).
procedure(trial_on_rich_growthrate_ynr073c_5_result_1_proc).
has_representation(trial_on_rich_growthrate_ynr073c_5_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ynr073c_5_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_ynr073c_5_result,trial_on_rich_growthrate_ynr073c_5_result_2).
has_representation(trial_on_rich_growthrate_ynr073c_5_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_ynr073c_5_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_ynr073c_5_result_2,trial_on_rich_growthrate_ynr073c_5_result_2_proc).
procedure(trial_on_rich_growthrate_ynr073c_5_result_2_proc).
has_representation(trial_on_rich_growthrate_ynr073c_5_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ynr073c_5_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_ynr073c_6,trial_on_rich_growthrate_ynr073c_6_design).
design(trial_on_rich_growthrate_ynr073c_6_design).
has_proposition(trial_on_rich_growthrate_ynr073c_6_design,trial_on_rich_growthrate_ynr073c_6_factor).
factor(trial_on_rich_growthrate_ynr073c_6_factor).
has_representation(trial_on_rich_growthrate_ynr073c_6_factor,'presence or absence of ynr073c').
has_input(trial_on_rich_growthrate_ynr073c_6,trial_on_rich_growthrate_ynr073c_6_data).
data(trial_on_rich_growthrate_ynr073c_6_data).
has_part(trial_on_rich_growthrate_ynr073c_6_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_ynr073c_6_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_ynr073c_6_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_ynr073c_6,'mar07-trial7_expt001-plate002').
plate('mar07-trial7_expt001-plate002').
has_proposition(trial_on_rich_growthrate_ynr073c_6,trial_on_rich_growthrate_ynr073c_6_result).
result(trial_on_rich_growthrate_ynr073c_6_result).
has_part(trial_on_rich_growthrate_ynr073c_6_result,trial_on_rich_growthrate_ynr073c_6_result_1).
has_representation(trial_on_rich_growthrate_ynr073c_6_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_ynr073c_6_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_ynr073c_6_result_1,trial_on_rich_growthrate_ynr073c_6_result_1_proc).
procedure(trial_on_rich_growthrate_ynr073c_6_result_1_proc).
has_representation(trial_on_rich_growthrate_ynr073c_6_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ynr073c_6_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_ynr073c_6_result,trial_on_rich_growthrate_ynr073c_6_result_2).
has_representation(trial_on_rich_growthrate_ynr073c_6_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_ynr073c_6_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_ynr073c_6_result_2,trial_on_rich_growthrate_ynr073c_6_result_2_proc).
procedure(trial_on_rich_growthrate_ynr073c_6_result_2_proc).
has_representation(trial_on_rich_growthrate_ynr073c_6_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ynr073c_6_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_ynr073c,trial_on_rich_growthrate_ynr073c_results).
result(trial_on_rich_growthrate_ynr073c_results).
has_part(trial_on_rich_growthrate_ynr073c_results,trial_on_rich_growthrate_ynr073c_results_1).
has_representation(trial_on_rich_growthrate_ynr073c_results_1,'median of knockout medians missing ynr073c').
text_representation('median of knockout medians missing ynr073c').
has_proposition(trial_on_rich_growthrate_ynr073c_results_1,trial_on_rich_growthrate_ynr073c_results_1_proc).
procedure(trial_on_rich_growthrate_ynr073c_results_1_proc).
has_proposition(trial_on_rich_growthrate_ynr073c_results_1_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_rich_growthrate_ynr073c_results,trial_on_rich_growthrate_ynr073c_results_2).
has_representation(trial_on_rich_growthrate_ynr073c_results_2,'median of wild type medians').
text_representation('median of wild type medians').
has_proposition(trial_on_rich_growthrate_ynr073c_results_2,trial_on_rich_growthrate_ynr073c_results_2_proc).
procedure(trial_on_rich_growthrate_ynr073c_results_2_proc).
has_proposition(trial_on_rich_growthrate_ynr073c_results_2_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_rich_growthrate_ynr073c_results,trial_on_rich_growthrate_ynr073c_results_3).
has_representation(trial_on_rich_growthrate_ynr073c_results_3,'difference between trial_on_rich_growthrate_ynr073c_results_1 and trial_on_rich_growthrate_ynr073c_results_2').
text_representation('difference between trial_on_rich_growthrate_ynr073c_results_1 and trial_on_rich_growthrate_ynr073c_results_2').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_result).
result(study_on_rich_growthrate_result).
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_1).
has_representation(study_on_rich_growthrate_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_rich_growthrate_result_1,'results/wr_kr_growth_rate.csv').
link('results/wr_kr_growth_rate.csv').
has_proposition(study_on_rich_growthrate_result_1,study_on_rich_growthrate_result_1_proc).
procedure(study_on_rich_growthrate_result_1_proc).
has_proposition(study_on_rich_growthrate_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_2).
has_representation(study_on_rich_growthrate_result_2,'bar graph (histogram) plotting study_on_rich_growthrate_result_1').
text_representation('bar graph (histogram) plotting study_on_rich_growthrate_result_1').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate1.tiff').
link('results/kr_wr_growth_rate1.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate2.tiff').
link('results/kr_wr_growth_rate2.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/overlayed_growth_rate.tiff').
link('results/overlayed_growth_rate.tiff').
has_proposition(study_on_rich_growthrate_result_2,study_on_rich_growthrate_result_2_proc).
procedure(study_on_rich_growthrate_result_2_proc).
has_proposition(study_on_rich_growthrate_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_conclusion).
conclusion(study_on_rich_growthrate_conclusion).
has_representation(study_on_rich_growthrate_conclusion,'The knockouts have higher growth rate in rich than the wild type').
text_representation('The knockouts have higher growth rate in rich than the wild type').
has_proposition(study_on_rich_growthrate_conclusion,'obtain statistical mode of study_on_rich_growthrate_result_1').
procedure('obtain statistical mode of study_on_rich_growthrate_result_1').
text_representation('obtain statistical mode of study_on_rich_growthrate_result_1').
has_part(study_on_rich_growthrate,trial_on_rich_growthrate_yer152c).
trial(trial_on_rich_growthrate_yer152c).
has_agent(trial_on_rich_growthrate_yer152c,yer152c).
strain(yer152c).
has_proposition(trial_on_rich_growthrate_yer152c_1,trial_on_rich_growthrate_yer152c_1_design).
design(trial_on_rich_growthrate_yer152c_1_design).
has_proposition(trial_on_rich_growthrate_yer152c_1_design,trial_on_rich_growthrate_yer152c_1_factor).
factor(trial_on_rich_growthrate_yer152c_1_factor).
has_representation(trial_on_rich_growthrate_yer152c_1_factor,'presence or absence of yer152c').
has_input(trial_on_rich_growthrate_yer152c_1,trial_on_rich_growthrate_yer152c_1_data).
data(trial_on_rich_growthrate_yer152c_1_data).
has_part(trial_on_rich_growthrate_yer152c_1_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_yer152c_1_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_yer152c_1_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_yer152c_1,'jan07-lyss1_expt001-plate007').
plate('jan07-lyss1_expt001-plate007').
has_proposition(trial_on_rich_growthrate_yer152c_1,trial_on_rich_growthrate_yer152c_1_result).
result(trial_on_rich_growthrate_yer152c_1_result).
has_part(trial_on_rich_growthrate_yer152c_1_result,trial_on_rich_growthrate_yer152c_1_result_1).
has_representation(trial_on_rich_growthrate_yer152c_1_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_yer152c_1_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_yer152c_1_result_1,trial_on_rich_growthrate_yer152c_1_result_1_proc).
procedure(trial_on_rich_growthrate_yer152c_1_result_1_proc).
has_representation(trial_on_rich_growthrate_yer152c_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_yer152c_1_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_yer152c_1_result,trial_on_rich_growthrate_yer152c_1_result_2).
has_representation(trial_on_rich_growthrate_yer152c_1_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_yer152c_1_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_yer152c_1_result_2,trial_on_rich_growthrate_yer152c_1_result_2_proc).
procedure(trial_on_rich_growthrate_yer152c_1_result_2_proc).
has_representation(trial_on_rich_growthrate_yer152c_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_yer152c_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_yer152c_2,trial_on_rich_growthrate_yer152c_2_design).
design(trial_on_rich_growthrate_yer152c_2_design).
has_proposition(trial_on_rich_growthrate_yer152c_2_design,trial_on_rich_growthrate_yer152c_2_factor).
factor(trial_on_rich_growthrate_yer152c_2_factor).
has_representation(trial_on_rich_growthrate_yer152c_2_factor,'presence or absence of yer152c').
has_input(trial_on_rich_growthrate_yer152c_2,trial_on_rich_growthrate_yer152c_2_data).
data(trial_on_rich_growthrate_yer152c_2_data).
has_part(trial_on_rich_growthrate_yer152c_2_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_yer152c_2_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_yer152c_2_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_yer152c_2,'jan07-lyss1_expt001-plate008').
plate('jan07-lyss1_expt001-plate008').
has_proposition(trial_on_rich_growthrate_yer152c_2,trial_on_rich_growthrate_yer152c_2_result).
result(trial_on_rich_growthrate_yer152c_2_result).
has_part(trial_on_rich_growthrate_yer152c_2_result,trial_on_rich_growthrate_yer152c_2_result_1).
has_representation(trial_on_rich_growthrate_yer152c_2_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_yer152c_2_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_yer152c_2_result_1,trial_on_rich_growthrate_yer152c_2_result_1_proc).
procedure(trial_on_rich_growthrate_yer152c_2_result_1_proc).
has_representation(trial_on_rich_growthrate_yer152c_2_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_yer152c_2_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_yer152c_2_result,trial_on_rich_growthrate_yer152c_2_result_2).
has_representation(trial_on_rich_growthrate_yer152c_2_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_yer152c_2_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_yer152c_2_result_2,trial_on_rich_growthrate_yer152c_2_result_2_proc).
procedure(trial_on_rich_growthrate_yer152c_2_result_2_proc).
has_representation(trial_on_rich_growthrate_yer152c_2_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_yer152c_2_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_yer152c_3,trial_on_rich_growthrate_yer152c_3_design).
design(trial_on_rich_growthrate_yer152c_3_design).
has_proposition(trial_on_rich_growthrate_yer152c_3_design,trial_on_rich_growthrate_yer152c_3_factor).
factor(trial_on_rich_growthrate_yer152c_3_factor).
has_representation(trial_on_rich_growthrate_yer152c_3_factor,'presence or absence of yer152c').
has_input(trial_on_rich_growthrate_yer152c_3,trial_on_rich_growthrate_yer152c_3_data).
data(trial_on_rich_growthrate_yer152c_3_data).
has_part(trial_on_rich_growthrate_yer152c_3_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_yer152c_3_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_yer152c_3_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_yer152c_3,'jan07-lyss1_expt001-plate009').
plate('jan07-lyss1_expt001-plate009').
has_proposition(trial_on_rich_growthrate_yer152c_3,trial_on_rich_growthrate_yer152c_3_result).
result(trial_on_rich_growthrate_yer152c_3_result).
has_part(trial_on_rich_growthrate_yer152c_3_result,trial_on_rich_growthrate_yer152c_3_result_1).
has_representation(trial_on_rich_growthrate_yer152c_3_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_yer152c_3_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_yer152c_3_result_1,trial_on_rich_growthrate_yer152c_3_result_1_proc).
procedure(trial_on_rich_growthrate_yer152c_3_result_1_proc).
has_representation(trial_on_rich_growthrate_yer152c_3_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_yer152c_3_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_yer152c_3_result,trial_on_rich_growthrate_yer152c_3_result_2).
has_representation(trial_on_rich_growthrate_yer152c_3_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_yer152c_3_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_yer152c_3_result_2,trial_on_rich_growthrate_yer152c_3_result_2_proc).
procedure(trial_on_rich_growthrate_yer152c_3_result_2_proc).
has_representation(trial_on_rich_growthrate_yer152c_3_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_yer152c_3_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_yer152c,trial_on_rich_growthrate_yer152c_results).
result(trial_on_rich_growthrate_yer152c_results).
has_part(trial_on_rich_growthrate_yer152c_results,trial_on_rich_growthrate_yer152c_results_1).
has_representation(trial_on_rich_growthrate_yer152c_results_1,'median of knockout medians missing yer152c').
text_representation('median of knockout medians missing yer152c').
has_proposition(trial_on_rich_growthrate_yer152c_results_1,trial_on_rich_growthrate_yer152c_results_1_proc).
procedure(trial_on_rich_growthrate_yer152c_results_1_proc).
has_proposition(trial_on_rich_growthrate_yer152c_results_1_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_rich_growthrate_yer152c_results,trial_on_rich_growthrate_yer152c_results_2).
has_representation(trial_on_rich_growthrate_yer152c_results_2,'median of wild type medians').
text_representation('median of wild type medians').
has_proposition(trial_on_rich_growthrate_yer152c_results_2,trial_on_rich_growthrate_yer152c_results_2_proc).
procedure(trial_on_rich_growthrate_yer152c_results_2_proc).
has_proposition(trial_on_rich_growthrate_yer152c_results_2_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_rich_growthrate_yer152c_results,trial_on_rich_growthrate_yer152c_results_3).
has_representation(trial_on_rich_growthrate_yer152c_results_3,'difference between trial_on_rich_growthrate_yer152c_results_1 and trial_on_rich_growthrate_yer152c_results_2').
text_representation('difference between trial_on_rich_growthrate_yer152c_results_1 and trial_on_rich_growthrate_yer152c_results_2').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_result).
result(study_on_rich_growthrate_result).
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_1).
has_representation(study_on_rich_growthrate_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_rich_growthrate_result_1,'results/wr_kr_growth_rate.csv').
link('results/wr_kr_growth_rate.csv').
has_proposition(study_on_rich_growthrate_result_1,study_on_rich_growthrate_result_1_proc).
procedure(study_on_rich_growthrate_result_1_proc).
has_proposition(study_on_rich_growthrate_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_2).
has_representation(study_on_rich_growthrate_result_2,'bar graph (histogram) plotting study_on_rich_growthrate_result_1').
text_representation('bar graph (histogram) plotting study_on_rich_growthrate_result_1').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate1.tiff').
link('results/kr_wr_growth_rate1.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate2.tiff').
link('results/kr_wr_growth_rate2.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/overlayed_growth_rate.tiff').
link('results/overlayed_growth_rate.tiff').
has_proposition(study_on_rich_growthrate_result_2,study_on_rich_growthrate_result_2_proc).
procedure(study_on_rich_growthrate_result_2_proc).
has_proposition(study_on_rich_growthrate_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_conclusion).
conclusion(study_on_rich_growthrate_conclusion).
has_representation(study_on_rich_growthrate_conclusion,'The knockouts have higher growth rate in rich than the wild type').
text_representation('The knockouts have higher growth rate in rich than the wild type').
has_proposition(study_on_rich_growthrate_conclusion,'obtain statistical mode of study_on_rich_growthrate_result_1').
procedure('obtain statistical mode of study_on_rich_growthrate_result_1').
text_representation('obtain statistical mode of study_on_rich_growthrate_result_1').
has_part(study_on_rich_growthrate,trial_on_rich_growthrate_rsyd000001).
trial(trial_on_rich_growthrate_rsyd000001).
has_agent(trial_on_rich_growthrate_rsyd000001,rsyd000001).
strain(rsyd000001).
has_proposition(trial_on_rich_growthrate_rsyd000001_1,trial_on_rich_growthrate_rsyd000001_1_design).
design(trial_on_rich_growthrate_rsyd000001_1_design).
has_proposition(trial_on_rich_growthrate_rsyd000001_1_design,trial_on_rich_growthrate_rsyd000001_1_factor).
factor(trial_on_rich_growthrate_rsyd000001_1_factor).
has_representation(trial_on_rich_growthrate_rsyd000001_1_factor,'presence or absence of rsyd000001').
has_input(trial_on_rich_growthrate_rsyd000001_1,trial_on_rich_growthrate_rsyd000001_1_data).
data(trial_on_rich_growthrate_rsyd000001_1_data).
has_part(trial_on_rich_growthrate_rsyd000001_1_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_rsyd000001_1_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_rsyd000001_1_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_rsyd000001_1,'jan07-lysd1_expt001-plate004').
plate('jan07-lysd1_expt001-plate004').
has_proposition(trial_on_rich_growthrate_rsyd000001_1,trial_on_rich_growthrate_rsyd000001_1_result).
result(trial_on_rich_growthrate_rsyd000001_1_result).
has_part(trial_on_rich_growthrate_rsyd000001_1_result,trial_on_rich_growthrate_rsyd000001_1_result_1).
has_representation(trial_on_rich_growthrate_rsyd000001_1_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_rsyd000001_1_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_rsyd000001_1_result_1,trial_on_rich_growthrate_rsyd000001_1_result_1_proc).
procedure(trial_on_rich_growthrate_rsyd000001_1_result_1_proc).
has_representation(trial_on_rich_growthrate_rsyd000001_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_rsyd000001_1_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_rsyd000001_1_result,trial_on_rich_growthrate_rsyd000001_1_result_2).
has_representation(trial_on_rich_growthrate_rsyd000001_1_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_rsyd000001_1_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_rsyd000001_1_result_2,trial_on_rich_growthrate_rsyd000001_1_result_2_proc).
procedure(trial_on_rich_growthrate_rsyd000001_1_result_2_proc).
has_representation(trial_on_rich_growthrate_rsyd000001_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_rsyd000001_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_rsyd000001_2,trial_on_rich_growthrate_rsyd000001_2_design).
design(trial_on_rich_growthrate_rsyd000001_2_design).
has_proposition(trial_on_rich_growthrate_rsyd000001_2_design,trial_on_rich_growthrate_rsyd000001_2_factor).
factor(trial_on_rich_growthrate_rsyd000001_2_factor).
has_representation(trial_on_rich_growthrate_rsyd000001_2_factor,'presence or absence of rsyd000001').
has_input(trial_on_rich_growthrate_rsyd000001_2,trial_on_rich_growthrate_rsyd000001_2_data).
data(trial_on_rich_growthrate_rsyd000001_2_data).
has_part(trial_on_rich_growthrate_rsyd000001_2_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_rsyd000001_2_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_rsyd000001_2_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_rsyd000001_2,'jan07-lysd1_expt001-plate005').
plate('jan07-lysd1_expt001-plate005').
has_proposition(trial_on_rich_growthrate_rsyd000001_2,trial_on_rich_growthrate_rsyd000001_2_result).
result(trial_on_rich_growthrate_rsyd000001_2_result).
has_part(trial_on_rich_growthrate_rsyd000001_2_result,trial_on_rich_growthrate_rsyd000001_2_result_1).
has_representation(trial_on_rich_growthrate_rsyd000001_2_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_rsyd000001_2_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_rsyd000001_2_result_1,trial_on_rich_growthrate_rsyd000001_2_result_1_proc).
procedure(trial_on_rich_growthrate_rsyd000001_2_result_1_proc).
has_representation(trial_on_rich_growthrate_rsyd000001_2_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_rsyd000001_2_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_rsyd000001_2_result,trial_on_rich_growthrate_rsyd000001_2_result_2).
has_representation(trial_on_rich_growthrate_rsyd000001_2_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_rsyd000001_2_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_rsyd000001_2_result_2,trial_on_rich_growthrate_rsyd000001_2_result_2_proc).
procedure(trial_on_rich_growthrate_rsyd000001_2_result_2_proc).
has_representation(trial_on_rich_growthrate_rsyd000001_2_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_rsyd000001_2_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_rsyd000001_3,trial_on_rich_growthrate_rsyd000001_3_design).
design(trial_on_rich_growthrate_rsyd000001_3_design).
has_proposition(trial_on_rich_growthrate_rsyd000001_3_design,trial_on_rich_growthrate_rsyd000001_3_factor).
factor(trial_on_rich_growthrate_rsyd000001_3_factor).
has_representation(trial_on_rich_growthrate_rsyd000001_3_factor,'presence or absence of rsyd000001').
has_input(trial_on_rich_growthrate_rsyd000001_3,trial_on_rich_growthrate_rsyd000001_3_data).
data(trial_on_rich_growthrate_rsyd000001_3_data).
has_part(trial_on_rich_growthrate_rsyd000001_3_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_rsyd000001_3_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_rsyd000001_3_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_rsyd000001_3,'jan07-lysd1_expt001-plate006').
plate('jan07-lysd1_expt001-plate006').
has_proposition(trial_on_rich_growthrate_rsyd000001_3,trial_on_rich_growthrate_rsyd000001_3_result).
result(trial_on_rich_growthrate_rsyd000001_3_result).
has_part(trial_on_rich_growthrate_rsyd000001_3_result,trial_on_rich_growthrate_rsyd000001_3_result_1).
has_representation(trial_on_rich_growthrate_rsyd000001_3_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_rsyd000001_3_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_rsyd000001_3_result_1,trial_on_rich_growthrate_rsyd000001_3_result_1_proc).
procedure(trial_on_rich_growthrate_rsyd000001_3_result_1_proc).
has_representation(trial_on_rich_growthrate_rsyd000001_3_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_rsyd000001_3_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_rsyd000001_3_result,trial_on_rich_growthrate_rsyd000001_3_result_2).
has_representation(trial_on_rich_growthrate_rsyd000001_3_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_rsyd000001_3_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_rsyd000001_3_result_2,trial_on_rich_growthrate_rsyd000001_3_result_2_proc).
procedure(trial_on_rich_growthrate_rsyd000001_3_result_2_proc).
has_representation(trial_on_rich_growthrate_rsyd000001_3_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_rsyd000001_3_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_rsyd000001,trial_on_rich_growthrate_rsyd000001_results).
result(trial_on_rich_growthrate_rsyd000001_results).
has_part(trial_on_rich_growthrate_rsyd000001_results,trial_on_rich_growthrate_rsyd000001_results_1).
has_representation(trial_on_rich_growthrate_rsyd000001_results_1,'median of knockout medians missing rsyd000001').
text_representation('median of knockout medians missing rsyd000001').
has_proposition(trial_on_rich_growthrate_rsyd000001_results_1,trial_on_rich_growthrate_rsyd000001_results_1_proc).
procedure(trial_on_rich_growthrate_rsyd000001_results_1_proc).
has_proposition(trial_on_rich_growthrate_rsyd000001_results_1_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_rich_growthrate_rsyd000001_results,trial_on_rich_growthrate_rsyd000001_results_2).
has_representation(trial_on_rich_growthrate_rsyd000001_results_2,'median of wild type medians').
text_representation('median of wild type medians').
has_proposition(trial_on_rich_growthrate_rsyd000001_results_2,trial_on_rich_growthrate_rsyd000001_results_2_proc).
procedure(trial_on_rich_growthrate_rsyd000001_results_2_proc).
has_proposition(trial_on_rich_growthrate_rsyd000001_results_2_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_rich_growthrate_rsyd000001_results,trial_on_rich_growthrate_rsyd000001_results_3).
has_representation(trial_on_rich_growthrate_rsyd000001_results_3,'difference between trial_on_rich_growthrate_rsyd000001_results_1 and trial_on_rich_growthrate_rsyd000001_results_2').
text_representation('difference between trial_on_rich_growthrate_rsyd000001_results_1 and trial_on_rich_growthrate_rsyd000001_results_2').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_result).
result(study_on_rich_growthrate_result).
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_1).
has_representation(study_on_rich_growthrate_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_rich_growthrate_result_1,'results/wr_kr_growth_rate.csv').
link('results/wr_kr_growth_rate.csv').
has_proposition(study_on_rich_growthrate_result_1,study_on_rich_growthrate_result_1_proc).
procedure(study_on_rich_growthrate_result_1_proc).
has_proposition(study_on_rich_growthrate_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_2).
has_representation(study_on_rich_growthrate_result_2,'bar graph (histogram) plotting study_on_rich_growthrate_result_1').
text_representation('bar graph (histogram) plotting study_on_rich_growthrate_result_1').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate1.tiff').
link('results/kr_wr_growth_rate1.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate2.tiff').
link('results/kr_wr_growth_rate2.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/overlayed_growth_rate.tiff').
link('results/overlayed_growth_rate.tiff').
has_proposition(study_on_rich_growthrate_result_2,study_on_rich_growthrate_result_2_proc).
procedure(study_on_rich_growthrate_result_2_proc).
has_proposition(study_on_rich_growthrate_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_conclusion).
conclusion(study_on_rich_growthrate_conclusion).
has_representation(study_on_rich_growthrate_conclusion,'The knockouts have higher growth rate in rich than the wild type').
text_representation('The knockouts have higher growth rate in rich than the wild type').
has_proposition(study_on_rich_growthrate_conclusion,'obtain statistical mode of study_on_rich_growthrate_result_1').
procedure('obtain statistical mode of study_on_rich_growthrate_result_1').
text_representation('obtain statistical mode of study_on_rich_growthrate_result_1').
has_part(study_on_rich_growthrate,trial_on_rich_growthrate_rsyd000003).
trial(trial_on_rich_growthrate_rsyd000003).
has_agent(trial_on_rich_growthrate_rsyd000003,rsyd000003).
strain(rsyd000003).
has_proposition(trial_on_rich_growthrate_rsyd000003_1,trial_on_rich_growthrate_rsyd000003_1_design).
design(trial_on_rich_growthrate_rsyd000003_1_design).
has_proposition(trial_on_rich_growthrate_rsyd000003_1_design,trial_on_rich_growthrate_rsyd000003_1_factor).
factor(trial_on_rich_growthrate_rsyd000003_1_factor).
has_representation(trial_on_rich_growthrate_rsyd000003_1_factor,'presence or absence of rsyd000003').
has_input(trial_on_rich_growthrate_rsyd000003_1,trial_on_rich_growthrate_rsyd000003_1_data).
data(trial_on_rich_growthrate_rsyd000003_1_data).
has_part(trial_on_rich_growthrate_rsyd000003_1_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_rsyd000003_1_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_rsyd000003_1_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_rsyd000003_1,'jan07-lysd1_expt001-plate001').
plate('jan07-lysd1_expt001-plate001').
has_proposition(trial_on_rich_growthrate_rsyd000003_1,trial_on_rich_growthrate_rsyd000003_1_result).
result(trial_on_rich_growthrate_rsyd000003_1_result).
has_part(trial_on_rich_growthrate_rsyd000003_1_result,trial_on_rich_growthrate_rsyd000003_1_result_1).
has_representation(trial_on_rich_growthrate_rsyd000003_1_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_rsyd000003_1_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_rsyd000003_1_result_1,trial_on_rich_growthrate_rsyd000003_1_result_1_proc).
procedure(trial_on_rich_growthrate_rsyd000003_1_result_1_proc).
has_representation(trial_on_rich_growthrate_rsyd000003_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_rsyd000003_1_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_rsyd000003_1_result,trial_on_rich_growthrate_rsyd000003_1_result_2).
has_representation(trial_on_rich_growthrate_rsyd000003_1_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_rsyd000003_1_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_rsyd000003_1_result_2,trial_on_rich_growthrate_rsyd000003_1_result_2_proc).
procedure(trial_on_rich_growthrate_rsyd000003_1_result_2_proc).
has_representation(trial_on_rich_growthrate_rsyd000003_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_rsyd000003_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_rsyd000003_2,trial_on_rich_growthrate_rsyd000003_2_design).
design(trial_on_rich_growthrate_rsyd000003_2_design).
has_proposition(trial_on_rich_growthrate_rsyd000003_2_design,trial_on_rich_growthrate_rsyd000003_2_factor).
factor(trial_on_rich_growthrate_rsyd000003_2_factor).
has_representation(trial_on_rich_growthrate_rsyd000003_2_factor,'presence or absence of rsyd000003').
has_input(trial_on_rich_growthrate_rsyd000003_2,trial_on_rich_growthrate_rsyd000003_2_data).
data(trial_on_rich_growthrate_rsyd000003_2_data).
has_part(trial_on_rich_growthrate_rsyd000003_2_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_rsyd000003_2_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_rsyd000003_2_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_rsyd000003_2,'jan07-lysd1_expt001-plate002').
plate('jan07-lysd1_expt001-plate002').
has_proposition(trial_on_rich_growthrate_rsyd000003_2,trial_on_rich_growthrate_rsyd000003_2_result).
result(trial_on_rich_growthrate_rsyd000003_2_result).
has_part(trial_on_rich_growthrate_rsyd000003_2_result,trial_on_rich_growthrate_rsyd000003_2_result_1).
has_representation(trial_on_rich_growthrate_rsyd000003_2_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_rsyd000003_2_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_rsyd000003_2_result_1,trial_on_rich_growthrate_rsyd000003_2_result_1_proc).
procedure(trial_on_rich_growthrate_rsyd000003_2_result_1_proc).
has_representation(trial_on_rich_growthrate_rsyd000003_2_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_rsyd000003_2_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_rsyd000003_2_result,trial_on_rich_growthrate_rsyd000003_2_result_2).
has_representation(trial_on_rich_growthrate_rsyd000003_2_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_rsyd000003_2_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_rsyd000003_2_result_2,trial_on_rich_growthrate_rsyd000003_2_result_2_proc).
procedure(trial_on_rich_growthrate_rsyd000003_2_result_2_proc).
has_representation(trial_on_rich_growthrate_rsyd000003_2_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_rsyd000003_2_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_rsyd000003_3,trial_on_rich_growthrate_rsyd000003_3_design).
design(trial_on_rich_growthrate_rsyd000003_3_design).
has_proposition(trial_on_rich_growthrate_rsyd000003_3_design,trial_on_rich_growthrate_rsyd000003_3_factor).
factor(trial_on_rich_growthrate_rsyd000003_3_factor).
has_representation(trial_on_rich_growthrate_rsyd000003_3_factor,'presence or absence of rsyd000003').
has_input(trial_on_rich_growthrate_rsyd000003_3,trial_on_rich_growthrate_rsyd000003_3_data).
data(trial_on_rich_growthrate_rsyd000003_3_data).
has_part(trial_on_rich_growthrate_rsyd000003_3_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_rsyd000003_3_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_rsyd000003_3_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_rsyd000003_3,'jan07-lysd1_expt001-plate003').
plate('jan07-lysd1_expt001-plate003').
has_proposition(trial_on_rich_growthrate_rsyd000003_3,trial_on_rich_growthrate_rsyd000003_3_result).
result(trial_on_rich_growthrate_rsyd000003_3_result).
has_part(trial_on_rich_growthrate_rsyd000003_3_result,trial_on_rich_growthrate_rsyd000003_3_result_1).
has_representation(trial_on_rich_growthrate_rsyd000003_3_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_rsyd000003_3_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_rsyd000003_3_result_1,trial_on_rich_growthrate_rsyd000003_3_result_1_proc).
procedure(trial_on_rich_growthrate_rsyd000003_3_result_1_proc).
has_representation(trial_on_rich_growthrate_rsyd000003_3_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_rsyd000003_3_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_rsyd000003_3_result,trial_on_rich_growthrate_rsyd000003_3_result_2).
has_representation(trial_on_rich_growthrate_rsyd000003_3_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_rsyd000003_3_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_rsyd000003_3_result_2,trial_on_rich_growthrate_rsyd000003_3_result_2_proc).
procedure(trial_on_rich_growthrate_rsyd000003_3_result_2_proc).
has_representation(trial_on_rich_growthrate_rsyd000003_3_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_rsyd000003_3_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_rsyd000003,trial_on_rich_growthrate_rsyd000003_results).
result(trial_on_rich_growthrate_rsyd000003_results).
has_part(trial_on_rich_growthrate_rsyd000003_results,trial_on_rich_growthrate_rsyd000003_results_1).
has_representation(trial_on_rich_growthrate_rsyd000003_results_1,'median of knockout medians missing rsyd000003').
text_representation('median of knockout medians missing rsyd000003').
has_proposition(trial_on_rich_growthrate_rsyd000003_results_1,trial_on_rich_growthrate_rsyd000003_results_1_proc).
procedure(trial_on_rich_growthrate_rsyd000003_results_1_proc).
has_proposition(trial_on_rich_growthrate_rsyd000003_results_1_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_rich_growthrate_rsyd000003_results,trial_on_rich_growthrate_rsyd000003_results_2).
has_representation(trial_on_rich_growthrate_rsyd000003_results_2,'median of wild type medians').
text_representation('median of wild type medians').
has_proposition(trial_on_rich_growthrate_rsyd000003_results_2,trial_on_rich_growthrate_rsyd000003_results_2_proc).
procedure(trial_on_rich_growthrate_rsyd000003_results_2_proc).
has_proposition(trial_on_rich_growthrate_rsyd000003_results_2_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_rich_growthrate_rsyd000003_results,trial_on_rich_growthrate_rsyd000003_results_3).
has_representation(trial_on_rich_growthrate_rsyd000003_results_3,'difference between trial_on_rich_growthrate_rsyd000003_results_1 and trial_on_rich_growthrate_rsyd000003_results_2').
text_representation('difference between trial_on_rich_growthrate_rsyd000003_results_1 and trial_on_rich_growthrate_rsyd000003_results_2').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_result).
result(study_on_rich_growthrate_result).
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_1).
has_representation(study_on_rich_growthrate_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_rich_growthrate_result_1,'results/wr_kr_growth_rate.csv').
link('results/wr_kr_growth_rate.csv').
has_proposition(study_on_rich_growthrate_result_1,study_on_rich_growthrate_result_1_proc).
procedure(study_on_rich_growthrate_result_1_proc).
has_proposition(study_on_rich_growthrate_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_2).
has_representation(study_on_rich_growthrate_result_2,'bar graph (histogram) plotting study_on_rich_growthrate_result_1').
text_representation('bar graph (histogram) plotting study_on_rich_growthrate_result_1').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate1.tiff').
link('results/kr_wr_growth_rate1.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate2.tiff').
link('results/kr_wr_growth_rate2.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/overlayed_growth_rate.tiff').
link('results/overlayed_growth_rate.tiff').
has_proposition(study_on_rich_growthrate_result_2,study_on_rich_growthrate_result_2_proc).
procedure(study_on_rich_growthrate_result_2_proc).
has_proposition(study_on_rich_growthrate_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_conclusion).
conclusion(study_on_rich_growthrate_conclusion).
has_representation(study_on_rich_growthrate_conclusion,'The knockouts have higher growth rate in rich than the wild type').
text_representation('The knockouts have higher growth rate in rich than the wild type').
has_proposition(study_on_rich_growthrate_conclusion,'obtain statistical mode of study_on_rich_growthrate_result_1').
procedure('obtain statistical mode of study_on_rich_growthrate_result_1').
text_representation('obtain statistical mode of study_on_rich_growthrate_result_1').
has_part(study_on_rich_growthrate,trial_on_rich_growthrate_ynr034w).
trial(trial_on_rich_growthrate_ynr034w).
has_agent(trial_on_rich_growthrate_ynr034w,ynr034w).
strain(ynr034w).
has_proposition(trial_on_rich_growthrate_ynr034w_1,trial_on_rich_growthrate_ynr034w_1_design).
design(trial_on_rich_growthrate_ynr034w_1_design).
has_proposition(trial_on_rich_growthrate_ynr034w_1_design,trial_on_rich_growthrate_ynr034w_1_factor).
factor(trial_on_rich_growthrate_ynr034w_1_factor).
has_representation(trial_on_rich_growthrate_ynr034w_1_factor,'presence or absence of ynr034w').
has_input(trial_on_rich_growthrate_ynr034w_1,trial_on_rich_growthrate_ynr034w_1_data).
data(trial_on_rich_growthrate_ynr034w_1_data).
has_part(trial_on_rich_growthrate_ynr034w_1_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_ynr034w_1_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_ynr034w_1_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_ynr034w_1,'feb07-trial1_expt001-plate006').
plate('feb07-trial1_expt001-plate006').
has_proposition(trial_on_rich_growthrate_ynr034w_1,trial_on_rich_growthrate_ynr034w_1_result).
result(trial_on_rich_growthrate_ynr034w_1_result).
has_part(trial_on_rich_growthrate_ynr034w_1_result,trial_on_rich_growthrate_ynr034w_1_result_1).
has_representation(trial_on_rich_growthrate_ynr034w_1_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_ynr034w_1_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_ynr034w_1_result_1,trial_on_rich_growthrate_ynr034w_1_result_1_proc).
procedure(trial_on_rich_growthrate_ynr034w_1_result_1_proc).
has_representation(trial_on_rich_growthrate_ynr034w_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ynr034w_1_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_ynr034w_1_result,trial_on_rich_growthrate_ynr034w_1_result_2).
has_representation(trial_on_rich_growthrate_ynr034w_1_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_ynr034w_1_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_ynr034w_1_result_2,trial_on_rich_growthrate_ynr034w_1_result_2_proc).
procedure(trial_on_rich_growthrate_ynr034w_1_result_2_proc).
has_representation(trial_on_rich_growthrate_ynr034w_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ynr034w_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_ynr034w_2,trial_on_rich_growthrate_ynr034w_2_design).
design(trial_on_rich_growthrate_ynr034w_2_design).
has_proposition(trial_on_rich_growthrate_ynr034w_2_design,trial_on_rich_growthrate_ynr034w_2_factor).
factor(trial_on_rich_growthrate_ynr034w_2_factor).
has_representation(trial_on_rich_growthrate_ynr034w_2_factor,'presence or absence of ynr034w').
has_input(trial_on_rich_growthrate_ynr034w_2,trial_on_rich_growthrate_ynr034w_2_data).
data(trial_on_rich_growthrate_ynr034w_2_data).
has_part(trial_on_rich_growthrate_ynr034w_2_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_ynr034w_2_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_ynr034w_2_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_ynr034w_2,'feb07-trial1_expt001-plate007').
plate('feb07-trial1_expt001-plate007').
has_proposition(trial_on_rich_growthrate_ynr034w_2,trial_on_rich_growthrate_ynr034w_2_result).
result(trial_on_rich_growthrate_ynr034w_2_result).
has_part(trial_on_rich_growthrate_ynr034w_2_result,trial_on_rich_growthrate_ynr034w_2_result_1).
has_representation(trial_on_rich_growthrate_ynr034w_2_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_ynr034w_2_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_ynr034w_2_result_1,trial_on_rich_growthrate_ynr034w_2_result_1_proc).
procedure(trial_on_rich_growthrate_ynr034w_2_result_1_proc).
has_representation(trial_on_rich_growthrate_ynr034w_2_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ynr034w_2_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_ynr034w_2_result,trial_on_rich_growthrate_ynr034w_2_result_2).
has_representation(trial_on_rich_growthrate_ynr034w_2_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_ynr034w_2_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_ynr034w_2_result_2,trial_on_rich_growthrate_ynr034w_2_result_2_proc).
procedure(trial_on_rich_growthrate_ynr034w_2_result_2_proc).
has_representation(trial_on_rich_growthrate_ynr034w_2_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ynr034w_2_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_ynr034w,trial_on_rich_growthrate_ynr034w_results).
result(trial_on_rich_growthrate_ynr034w_results).
has_part(trial_on_rich_growthrate_ynr034w_results,trial_on_rich_growthrate_ynr034w_results_1).
has_representation(trial_on_rich_growthrate_ynr034w_results_1,'median of knockout medians missing ynr034w').
text_representation('median of knockout medians missing ynr034w').
has_proposition(trial_on_rich_growthrate_ynr034w_results_1,trial_on_rich_growthrate_ynr034w_results_1_proc).
procedure(trial_on_rich_growthrate_ynr034w_results_1_proc).
has_proposition(trial_on_rich_growthrate_ynr034w_results_1_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_rich_growthrate_ynr034w_results,trial_on_rich_growthrate_ynr034w_results_2).
has_representation(trial_on_rich_growthrate_ynr034w_results_2,'median of wild type medians').
text_representation('median of wild type medians').
has_proposition(trial_on_rich_growthrate_ynr034w_results_2,trial_on_rich_growthrate_ynr034w_results_2_proc).
procedure(trial_on_rich_growthrate_ynr034w_results_2_proc).
has_proposition(trial_on_rich_growthrate_ynr034w_results_2_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_rich_growthrate_ynr034w_results,trial_on_rich_growthrate_ynr034w_results_3).
has_representation(trial_on_rich_growthrate_ynr034w_results_3,'difference between trial_on_rich_growthrate_ynr034w_results_1 and trial_on_rich_growthrate_ynr034w_results_2').
text_representation('difference between trial_on_rich_growthrate_ynr034w_results_1 and trial_on_rich_growthrate_ynr034w_results_2').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_result).
result(study_on_rich_growthrate_result).
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_1).
has_representation(study_on_rich_growthrate_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_rich_growthrate_result_1,'results/wr_kr_growth_rate.csv').
link('results/wr_kr_growth_rate.csv').
has_proposition(study_on_rich_growthrate_result_1,study_on_rich_growthrate_result_1_proc).
procedure(study_on_rich_growthrate_result_1_proc).
has_proposition(study_on_rich_growthrate_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_2).
has_representation(study_on_rich_growthrate_result_2,'bar graph (histogram) plotting study_on_rich_growthrate_result_1').
text_representation('bar graph (histogram) plotting study_on_rich_growthrate_result_1').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate1.tiff').
link('results/kr_wr_growth_rate1.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate2.tiff').
link('results/kr_wr_growth_rate2.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/overlayed_growth_rate.tiff').
link('results/overlayed_growth_rate.tiff').
has_proposition(study_on_rich_growthrate_result_2,study_on_rich_growthrate_result_2_proc).
procedure(study_on_rich_growthrate_result_2_proc).
has_proposition(study_on_rich_growthrate_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_conclusion).
conclusion(study_on_rich_growthrate_conclusion).
has_representation(study_on_rich_growthrate_conclusion,'The knockouts have higher growth rate in rich than the wild type').
text_representation('The knockouts have higher growth rate in rich than the wild type').
has_proposition(study_on_rich_growthrate_conclusion,'obtain statistical mode of study_on_rich_growthrate_result_1').
procedure('obtain statistical mode of study_on_rich_growthrate_result_1').
text_representation('obtain statistical mode of study_on_rich_growthrate_result_1').
has_part(study_on_rich_growthrate,trial_on_rich_growthrate_yjl218w).
trial(trial_on_rich_growthrate_yjl218w).
has_agent(trial_on_rich_growthrate_yjl218w,yjl218w).
strain(yjl218w).
has_proposition(trial_on_rich_growthrate_yjl218w_1,trial_on_rich_growthrate_yjl218w_1_design).
design(trial_on_rich_growthrate_yjl218w_1_design).
has_proposition(trial_on_rich_growthrate_yjl218w_1_design,trial_on_rich_growthrate_yjl218w_1_factor).
factor(trial_on_rich_growthrate_yjl218w_1_factor).
has_representation(trial_on_rich_growthrate_yjl218w_1_factor,'presence or absence of yjl218w').
has_input(trial_on_rich_growthrate_yjl218w_1,trial_on_rich_growthrate_yjl218w_1_data).
data(trial_on_rich_growthrate_yjl218w_1_data).
has_part(trial_on_rich_growthrate_yjl218w_1_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_yjl218w_1_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_yjl218w_1_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_yjl218w_1,'jan07-trial2_expt001-plate002').
plate('jan07-trial2_expt001-plate002').
has_proposition(trial_on_rich_growthrate_yjl218w_1,trial_on_rich_growthrate_yjl218w_1_result).
result(trial_on_rich_growthrate_yjl218w_1_result).
has_part(trial_on_rich_growthrate_yjl218w_1_result,trial_on_rich_growthrate_yjl218w_1_result_1).
has_representation(trial_on_rich_growthrate_yjl218w_1_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_yjl218w_1_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_yjl218w_1_result_1,trial_on_rich_growthrate_yjl218w_1_result_1_proc).
procedure(trial_on_rich_growthrate_yjl218w_1_result_1_proc).
has_representation(trial_on_rich_growthrate_yjl218w_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_yjl218w_1_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_yjl218w_1_result,trial_on_rich_growthrate_yjl218w_1_result_2).
has_representation(trial_on_rich_growthrate_yjl218w_1_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_yjl218w_1_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_yjl218w_1_result_2,trial_on_rich_growthrate_yjl218w_1_result_2_proc).
procedure(trial_on_rich_growthrate_yjl218w_1_result_2_proc).
has_representation(trial_on_rich_growthrate_yjl218w_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_yjl218w_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_yjl218w_2,trial_on_rich_growthrate_yjl218w_2_design).
design(trial_on_rich_growthrate_yjl218w_2_design).
has_proposition(trial_on_rich_growthrate_yjl218w_2_design,trial_on_rich_growthrate_yjl218w_2_factor).
factor(trial_on_rich_growthrate_yjl218w_2_factor).
has_representation(trial_on_rich_growthrate_yjl218w_2_factor,'presence or absence of yjl218w').
has_input(trial_on_rich_growthrate_yjl218w_2,trial_on_rich_growthrate_yjl218w_2_data).
data(trial_on_rich_growthrate_yjl218w_2_data).
has_part(trial_on_rich_growthrate_yjl218w_2_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_yjl218w_2_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_yjl218w_2_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_yjl218w_2,'mar07-trial1_expt001-plate001').
plate('mar07-trial1_expt001-plate001').
has_proposition(trial_on_rich_growthrate_yjl218w_2,trial_on_rich_growthrate_yjl218w_2_result).
result(trial_on_rich_growthrate_yjl218w_2_result).
has_part(trial_on_rich_growthrate_yjl218w_2_result,trial_on_rich_growthrate_yjl218w_2_result_1).
has_representation(trial_on_rich_growthrate_yjl218w_2_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_yjl218w_2_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_yjl218w_2_result_1,trial_on_rich_growthrate_yjl218w_2_result_1_proc).
procedure(trial_on_rich_growthrate_yjl218w_2_result_1_proc).
has_representation(trial_on_rich_growthrate_yjl218w_2_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_yjl218w_2_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_yjl218w_2_result,trial_on_rich_growthrate_yjl218w_2_result_2).
has_representation(trial_on_rich_growthrate_yjl218w_2_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_yjl218w_2_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_yjl218w_2_result_2,trial_on_rich_growthrate_yjl218w_2_result_2_proc).
procedure(trial_on_rich_growthrate_yjl218w_2_result_2_proc).
has_representation(trial_on_rich_growthrate_yjl218w_2_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_yjl218w_2_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_yjl218w,trial_on_rich_growthrate_yjl218w_results).
result(trial_on_rich_growthrate_yjl218w_results).
has_part(trial_on_rich_growthrate_yjl218w_results,trial_on_rich_growthrate_yjl218w_results_1).
has_representation(trial_on_rich_growthrate_yjl218w_results_1,'median of knockout medians missing yjl218w').
text_representation('median of knockout medians missing yjl218w').
has_proposition(trial_on_rich_growthrate_yjl218w_results_1,trial_on_rich_growthrate_yjl218w_results_1_proc).
procedure(trial_on_rich_growthrate_yjl218w_results_1_proc).
has_proposition(trial_on_rich_growthrate_yjl218w_results_1_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_rich_growthrate_yjl218w_results,trial_on_rich_growthrate_yjl218w_results_2).
has_representation(trial_on_rich_growthrate_yjl218w_results_2,'median of wild type medians').
text_representation('median of wild type medians').
has_proposition(trial_on_rich_growthrate_yjl218w_results_2,trial_on_rich_growthrate_yjl218w_results_2_proc).
procedure(trial_on_rich_growthrate_yjl218w_results_2_proc).
has_proposition(trial_on_rich_growthrate_yjl218w_results_2_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_rich_growthrate_yjl218w_results,trial_on_rich_growthrate_yjl218w_results_3).
has_representation(trial_on_rich_growthrate_yjl218w_results_3,'difference between trial_on_rich_growthrate_yjl218w_results_1 and trial_on_rich_growthrate_yjl218w_results_2').
text_representation('difference between trial_on_rich_growthrate_yjl218w_results_1 and trial_on_rich_growthrate_yjl218w_results_2').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_result).
result(study_on_rich_growthrate_result).
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_1).
has_representation(study_on_rich_growthrate_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_rich_growthrate_result_1,'results/wr_kr_growth_rate.csv').
link('results/wr_kr_growth_rate.csv').
has_proposition(study_on_rich_growthrate_result_1,study_on_rich_growthrate_result_1_proc).
procedure(study_on_rich_growthrate_result_1_proc).
has_proposition(study_on_rich_growthrate_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_2).
has_representation(study_on_rich_growthrate_result_2,'bar graph (histogram) plotting study_on_rich_growthrate_result_1').
text_representation('bar graph (histogram) plotting study_on_rich_growthrate_result_1').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate1.tiff').
link('results/kr_wr_growth_rate1.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate2.tiff').
link('results/kr_wr_growth_rate2.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/overlayed_growth_rate.tiff').
link('results/overlayed_growth_rate.tiff').
has_proposition(study_on_rich_growthrate_result_2,study_on_rich_growthrate_result_2_proc).
procedure(study_on_rich_growthrate_result_2_proc).
has_proposition(study_on_rich_growthrate_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_conclusion).
conclusion(study_on_rich_growthrate_conclusion).
has_representation(study_on_rich_growthrate_conclusion,'The knockouts have higher growth rate in rich than the wild type').
text_representation('The knockouts have higher growth rate in rich than the wild type').
has_proposition(study_on_rich_growthrate_conclusion,'obtain statistical mode of study_on_rich_growthrate_result_1').
procedure('obtain statistical mode of study_on_rich_growthrate_result_1').
text_representation('obtain statistical mode of study_on_rich_growthrate_result_1').
has_part(study_on_rich_growthrate,trial_on_rich_growthrate_ydr007w).
trial(trial_on_rich_growthrate_ydr007w).
has_agent(trial_on_rich_growthrate_ydr007w,ydr007w).
strain(ydr007w).
has_proposition(trial_on_rich_growthrate_ydr007w_1,trial_on_rich_growthrate_ydr007w_1_design).
design(trial_on_rich_growthrate_ydr007w_1_design).
has_proposition(trial_on_rich_growthrate_ydr007w_1_design,trial_on_rich_growthrate_ydr007w_1_factor).
factor(trial_on_rich_growthrate_ydr007w_1_factor).
has_representation(trial_on_rich_growthrate_ydr007w_1_factor,'presence or absence of ydr007w').
has_input(trial_on_rich_growthrate_ydr007w_1,trial_on_rich_growthrate_ydr007w_1_data).
data(trial_on_rich_growthrate_ydr007w_1_data).
has_part(trial_on_rich_growthrate_ydr007w_1_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_ydr007w_1_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_ydr007w_1_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_ydr007w_1,'nature-loop3_expt001-plate007').
plate('nature-loop3_expt001-plate007').
has_proposition(trial_on_rich_growthrate_ydr007w_1,trial_on_rich_growthrate_ydr007w_1_result).
result(trial_on_rich_growthrate_ydr007w_1_result).
has_part(trial_on_rich_growthrate_ydr007w_1_result,trial_on_rich_growthrate_ydr007w_1_result_1).
has_representation(trial_on_rich_growthrate_ydr007w_1_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_ydr007w_1_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_ydr007w_1_result_1,trial_on_rich_growthrate_ydr007w_1_result_1_proc).
procedure(trial_on_rich_growthrate_ydr007w_1_result_1_proc).
has_representation(trial_on_rich_growthrate_ydr007w_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ydr007w_1_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_ydr007w_1_result,trial_on_rich_growthrate_ydr007w_1_result_2).
has_representation(trial_on_rich_growthrate_ydr007w_1_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_ydr007w_1_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_ydr007w_1_result_2,trial_on_rich_growthrate_ydr007w_1_result_2_proc).
procedure(trial_on_rich_growthrate_ydr007w_1_result_2_proc).
has_representation(trial_on_rich_growthrate_ydr007w_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ydr007w_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_ydr007w_2,trial_on_rich_growthrate_ydr007w_2_design).
design(trial_on_rich_growthrate_ydr007w_2_design).
has_proposition(trial_on_rich_growthrate_ydr007w_2_design,trial_on_rich_growthrate_ydr007w_2_factor).
factor(trial_on_rich_growthrate_ydr007w_2_factor).
has_representation(trial_on_rich_growthrate_ydr007w_2_factor,'presence or absence of ydr007w').
has_input(trial_on_rich_growthrate_ydr007w_2,trial_on_rich_growthrate_ydr007w_2_data).
data(trial_on_rich_growthrate_ydr007w_2_data).
has_part(trial_on_rich_growthrate_ydr007w_2_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_ydr007w_2_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_ydr007w_2_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_ydr007w_2,'nature-loop3_expt002-plate002').
plate('nature-loop3_expt002-plate002').
has_proposition(trial_on_rich_growthrate_ydr007w_2,trial_on_rich_growthrate_ydr007w_2_result).
result(trial_on_rich_growthrate_ydr007w_2_result).
has_part(trial_on_rich_growthrate_ydr007w_2_result,trial_on_rich_growthrate_ydr007w_2_result_1).
has_representation(trial_on_rich_growthrate_ydr007w_2_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_ydr007w_2_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_ydr007w_2_result_1,trial_on_rich_growthrate_ydr007w_2_result_1_proc).
procedure(trial_on_rich_growthrate_ydr007w_2_result_1_proc).
has_representation(trial_on_rich_growthrate_ydr007w_2_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ydr007w_2_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_ydr007w_2_result,trial_on_rich_growthrate_ydr007w_2_result_2).
has_representation(trial_on_rich_growthrate_ydr007w_2_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_ydr007w_2_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_ydr007w_2_result_2,trial_on_rich_growthrate_ydr007w_2_result_2_proc).
procedure(trial_on_rich_growthrate_ydr007w_2_result_2_proc).
has_representation(trial_on_rich_growthrate_ydr007w_2_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ydr007w_2_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_ydr007w_3,trial_on_rich_growthrate_ydr007w_3_design).
design(trial_on_rich_growthrate_ydr007w_3_design).
has_proposition(trial_on_rich_growthrate_ydr007w_3_design,trial_on_rich_growthrate_ydr007w_3_factor).
factor(trial_on_rich_growthrate_ydr007w_3_factor).
has_representation(trial_on_rich_growthrate_ydr007w_3_factor,'presence or absence of ydr007w').
has_input(trial_on_rich_growthrate_ydr007w_3,trial_on_rich_growthrate_ydr007w_3_data).
data(trial_on_rich_growthrate_ydr007w_3_data).
has_part(trial_on_rich_growthrate_ydr007w_3_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_ydr007w_3_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_ydr007w_3_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_ydr007w_3,'nature-loop3_expt003-plate007').
plate('nature-loop3_expt003-plate007').
has_proposition(trial_on_rich_growthrate_ydr007w_3,trial_on_rich_growthrate_ydr007w_3_result).
result(trial_on_rich_growthrate_ydr007w_3_result).
has_part(trial_on_rich_growthrate_ydr007w_3_result,trial_on_rich_growthrate_ydr007w_3_result_1).
has_representation(trial_on_rich_growthrate_ydr007w_3_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_ydr007w_3_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_ydr007w_3_result_1,trial_on_rich_growthrate_ydr007w_3_result_1_proc).
procedure(trial_on_rich_growthrate_ydr007w_3_result_1_proc).
has_representation(trial_on_rich_growthrate_ydr007w_3_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ydr007w_3_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_ydr007w_3_result,trial_on_rich_growthrate_ydr007w_3_result_2).
has_representation(trial_on_rich_growthrate_ydr007w_3_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_ydr007w_3_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_ydr007w_3_result_2,trial_on_rich_growthrate_ydr007w_3_result_2_proc).
procedure(trial_on_rich_growthrate_ydr007w_3_result_2_proc).
has_representation(trial_on_rich_growthrate_ydr007w_3_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ydr007w_3_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_ydr007w_4,trial_on_rich_growthrate_ydr007w_4_design).
design(trial_on_rich_growthrate_ydr007w_4_design).
has_proposition(trial_on_rich_growthrate_ydr007w_4_design,trial_on_rich_growthrate_ydr007w_4_factor).
factor(trial_on_rich_growthrate_ydr007w_4_factor).
has_representation(trial_on_rich_growthrate_ydr007w_4_factor,'presence or absence of ydr007w').
has_input(trial_on_rich_growthrate_ydr007w_4,trial_on_rich_growthrate_ydr007w_4_data).
data(trial_on_rich_growthrate_ydr007w_4_data).
has_part(trial_on_rich_growthrate_ydr007w_4_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_ydr007w_4_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_ydr007w_4_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_ydr007w_4,'nature-loop3_expt004-plate002').
plate('nature-loop3_expt004-plate002').
has_proposition(trial_on_rich_growthrate_ydr007w_4,trial_on_rich_growthrate_ydr007w_4_result).
result(trial_on_rich_growthrate_ydr007w_4_result).
has_part(trial_on_rich_growthrate_ydr007w_4_result,trial_on_rich_growthrate_ydr007w_4_result_1).
has_representation(trial_on_rich_growthrate_ydr007w_4_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_ydr007w_4_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_ydr007w_4_result_1,trial_on_rich_growthrate_ydr007w_4_result_1_proc).
procedure(trial_on_rich_growthrate_ydr007w_4_result_1_proc).
has_representation(trial_on_rich_growthrate_ydr007w_4_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ydr007w_4_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_ydr007w_4_result,trial_on_rich_growthrate_ydr007w_4_result_2).
has_representation(trial_on_rich_growthrate_ydr007w_4_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_ydr007w_4_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_ydr007w_4_result_2,trial_on_rich_growthrate_ydr007w_4_result_2_proc).
procedure(trial_on_rich_growthrate_ydr007w_4_result_2_proc).
has_representation(trial_on_rich_growthrate_ydr007w_4_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ydr007w_4_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_ydr007w_5,trial_on_rich_growthrate_ydr007w_5_design).
design(trial_on_rich_growthrate_ydr007w_5_design).
has_proposition(trial_on_rich_growthrate_ydr007w_5_design,trial_on_rich_growthrate_ydr007w_5_factor).
factor(trial_on_rich_growthrate_ydr007w_5_factor).
has_representation(trial_on_rich_growthrate_ydr007w_5_factor,'presence or absence of ydr007w').
has_input(trial_on_rich_growthrate_ydr007w_5,trial_on_rich_growthrate_ydr007w_5_data).
data(trial_on_rich_growthrate_ydr007w_5_data).
has_part(trial_on_rich_growthrate_ydr007w_5_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_ydr007w_5_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_ydr007w_5_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_ydr007w_5,'nature-loop3_expt005-plate002').
plate('nature-loop3_expt005-plate002').
has_proposition(trial_on_rich_growthrate_ydr007w_5,trial_on_rich_growthrate_ydr007w_5_result).
result(trial_on_rich_growthrate_ydr007w_5_result).
has_part(trial_on_rich_growthrate_ydr007w_5_result,trial_on_rich_growthrate_ydr007w_5_result_1).
has_representation(trial_on_rich_growthrate_ydr007w_5_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_ydr007w_5_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_ydr007w_5_result_1,trial_on_rich_growthrate_ydr007w_5_result_1_proc).
procedure(trial_on_rich_growthrate_ydr007w_5_result_1_proc).
has_representation(trial_on_rich_growthrate_ydr007w_5_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ydr007w_5_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_ydr007w_5_result,trial_on_rich_growthrate_ydr007w_5_result_2).
has_representation(trial_on_rich_growthrate_ydr007w_5_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_ydr007w_5_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_ydr007w_5_result_2,trial_on_rich_growthrate_ydr007w_5_result_2_proc).
procedure(trial_on_rich_growthrate_ydr007w_5_result_2_proc).
has_representation(trial_on_rich_growthrate_ydr007w_5_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ydr007w_5_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_ydr007w_6,trial_on_rich_growthrate_ydr007w_6_design).
design(trial_on_rich_growthrate_ydr007w_6_design).
has_proposition(trial_on_rich_growthrate_ydr007w_6_design,trial_on_rich_growthrate_ydr007w_6_factor).
factor(trial_on_rich_growthrate_ydr007w_6_factor).
has_representation(trial_on_rich_growthrate_ydr007w_6_factor,'presence or absence of ydr007w').
has_input(trial_on_rich_growthrate_ydr007w_6,trial_on_rich_growthrate_ydr007w_6_data).
data(trial_on_rich_growthrate_ydr007w_6_data).
has_part(trial_on_rich_growthrate_ydr007w_6_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_ydr007w_6_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_ydr007w_6_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_ydr007w_6,'nature-loop1_expt001-plate007').
plate('nature-loop1_expt001-plate007').
has_proposition(trial_on_rich_growthrate_ydr007w_6,trial_on_rich_growthrate_ydr007w_6_result).
result(trial_on_rich_growthrate_ydr007w_6_result).
has_part(trial_on_rich_growthrate_ydr007w_6_result,trial_on_rich_growthrate_ydr007w_6_result_1).
has_representation(trial_on_rich_growthrate_ydr007w_6_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_ydr007w_6_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_ydr007w_6_result_1,trial_on_rich_growthrate_ydr007w_6_result_1_proc).
procedure(trial_on_rich_growthrate_ydr007w_6_result_1_proc).
has_representation(trial_on_rich_growthrate_ydr007w_6_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ydr007w_6_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_ydr007w_6_result,trial_on_rich_growthrate_ydr007w_6_result_2).
has_representation(trial_on_rich_growthrate_ydr007w_6_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_ydr007w_6_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_ydr007w_6_result_2,trial_on_rich_growthrate_ydr007w_6_result_2_proc).
procedure(trial_on_rich_growthrate_ydr007w_6_result_2_proc).
has_representation(trial_on_rich_growthrate_ydr007w_6_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ydr007w_6_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_ydr007w_7,trial_on_rich_growthrate_ydr007w_7_design).
design(trial_on_rich_growthrate_ydr007w_7_design).
has_proposition(trial_on_rich_growthrate_ydr007w_7_design,trial_on_rich_growthrate_ydr007w_7_factor).
factor(trial_on_rich_growthrate_ydr007w_7_factor).
has_representation(trial_on_rich_growthrate_ydr007w_7_factor,'presence or absence of ydr007w').
has_input(trial_on_rich_growthrate_ydr007w_7,trial_on_rich_growthrate_ydr007w_7_data).
data(trial_on_rich_growthrate_ydr007w_7_data).
has_part(trial_on_rich_growthrate_ydr007w_7_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_ydr007w_7_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_ydr007w_7_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_ydr007w_7,'nature-loop2_expt001-plate003').
plate('nature-loop2_expt001-plate003').
has_proposition(trial_on_rich_growthrate_ydr007w_7,trial_on_rich_growthrate_ydr007w_7_result).
result(trial_on_rich_growthrate_ydr007w_7_result).
has_part(trial_on_rich_growthrate_ydr007w_7_result,trial_on_rich_growthrate_ydr007w_7_result_1).
has_representation(trial_on_rich_growthrate_ydr007w_7_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_ydr007w_7_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_ydr007w_7_result_1,trial_on_rich_growthrate_ydr007w_7_result_1_proc).
procedure(trial_on_rich_growthrate_ydr007w_7_result_1_proc).
has_representation(trial_on_rich_growthrate_ydr007w_7_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ydr007w_7_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_ydr007w_7_result,trial_on_rich_growthrate_ydr007w_7_result_2).
has_representation(trial_on_rich_growthrate_ydr007w_7_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_ydr007w_7_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_ydr007w_7_result_2,trial_on_rich_growthrate_ydr007w_7_result_2_proc).
procedure(trial_on_rich_growthrate_ydr007w_7_result_2_proc).
has_representation(trial_on_rich_growthrate_ydr007w_7_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ydr007w_7_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_ydr007w_8,trial_on_rich_growthrate_ydr007w_8_design).
design(trial_on_rich_growthrate_ydr007w_8_design).
has_proposition(trial_on_rich_growthrate_ydr007w_8_design,trial_on_rich_growthrate_ydr007w_8_factor).
factor(trial_on_rich_growthrate_ydr007w_8_factor).
has_representation(trial_on_rich_growthrate_ydr007w_8_factor,'presence or absence of ydr007w').
has_input(trial_on_rich_growthrate_ydr007w_8,trial_on_rich_growthrate_ydr007w_8_data).
data(trial_on_rich_growthrate_ydr007w_8_data).
has_part(trial_on_rich_growthrate_ydr007w_8_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_ydr007w_8_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_ydr007w_8_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_ydr007w_8,'nature-loop3_expt006-plate001').
plate('nature-loop3_expt006-plate001').
has_proposition(trial_on_rich_growthrate_ydr007w_8,trial_on_rich_growthrate_ydr007w_8_result).
result(trial_on_rich_growthrate_ydr007w_8_result).
has_part(trial_on_rich_growthrate_ydr007w_8_result,trial_on_rich_growthrate_ydr007w_8_result_1).
has_representation(trial_on_rich_growthrate_ydr007w_8_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_ydr007w_8_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_ydr007w_8_result_1,trial_on_rich_growthrate_ydr007w_8_result_1_proc).
procedure(trial_on_rich_growthrate_ydr007w_8_result_1_proc).
has_representation(trial_on_rich_growthrate_ydr007w_8_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ydr007w_8_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_ydr007w_8_result,trial_on_rich_growthrate_ydr007w_8_result_2).
has_representation(trial_on_rich_growthrate_ydr007w_8_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_ydr007w_8_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_ydr007w_8_result_2,trial_on_rich_growthrate_ydr007w_8_result_2_proc).
procedure(trial_on_rich_growthrate_ydr007w_8_result_2_proc).
has_representation(trial_on_rich_growthrate_ydr007w_8_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ydr007w_8_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_ydr007w,trial_on_rich_growthrate_ydr007w_results).
result(trial_on_rich_growthrate_ydr007w_results).
has_part(trial_on_rich_growthrate_ydr007w_results,trial_on_rich_growthrate_ydr007w_results_1).
has_representation(trial_on_rich_growthrate_ydr007w_results_1,'median of knockout medians missing ydr007w').
text_representation('median of knockout medians missing ydr007w').
has_proposition(trial_on_rich_growthrate_ydr007w_results_1,trial_on_rich_growthrate_ydr007w_results_1_proc).
procedure(trial_on_rich_growthrate_ydr007w_results_1_proc).
has_proposition(trial_on_rich_growthrate_ydr007w_results_1_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_rich_growthrate_ydr007w_results,trial_on_rich_growthrate_ydr007w_results_2).
has_representation(trial_on_rich_growthrate_ydr007w_results_2,'median of wild type medians').
text_representation('median of wild type medians').
has_proposition(trial_on_rich_growthrate_ydr007w_results_2,trial_on_rich_growthrate_ydr007w_results_2_proc).
procedure(trial_on_rich_growthrate_ydr007w_results_2_proc).
has_proposition(trial_on_rich_growthrate_ydr007w_results_2_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_rich_growthrate_ydr007w_results,trial_on_rich_growthrate_ydr007w_results_3).
has_representation(trial_on_rich_growthrate_ydr007w_results_3,'difference between trial_on_rich_growthrate_ydr007w_results_1 and trial_on_rich_growthrate_ydr007w_results_2').
text_representation('difference between trial_on_rich_growthrate_ydr007w_results_1 and trial_on_rich_growthrate_ydr007w_results_2').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_result).
result(study_on_rich_growthrate_result).
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_1).
has_representation(study_on_rich_growthrate_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_rich_growthrate_result_1,'results/wr_kr_growth_rate.csv').
link('results/wr_kr_growth_rate.csv').
has_proposition(study_on_rich_growthrate_result_1,study_on_rich_growthrate_result_1_proc).
procedure(study_on_rich_growthrate_result_1_proc).
has_proposition(study_on_rich_growthrate_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_2).
has_representation(study_on_rich_growthrate_result_2,'bar graph (histogram) plotting study_on_rich_growthrate_result_1').
text_representation('bar graph (histogram) plotting study_on_rich_growthrate_result_1').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate1.tiff').
link('results/kr_wr_growth_rate1.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate2.tiff').
link('results/kr_wr_growth_rate2.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/overlayed_growth_rate.tiff').
link('results/overlayed_growth_rate.tiff').
has_proposition(study_on_rich_growthrate_result_2,study_on_rich_growthrate_result_2_proc).
procedure(study_on_rich_growthrate_result_2_proc).
has_proposition(study_on_rich_growthrate_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_conclusion).
conclusion(study_on_rich_growthrate_conclusion).
has_representation(study_on_rich_growthrate_conclusion,'The knockouts have higher growth rate in rich than the wild type').
text_representation('The knockouts have higher growth rate in rich than the wild type').
has_proposition(study_on_rich_growthrate_conclusion,'obtain statistical mode of study_on_rich_growthrate_result_1').
procedure('obtain statistical mode of study_on_rich_growthrate_result_1').
text_representation('obtain statistical mode of study_on_rich_growthrate_result_1').
has_part(study_on_rich_growthrate,trial_on_rich_growthrate_ygl026c).
trial(trial_on_rich_growthrate_ygl026c).
has_agent(trial_on_rich_growthrate_ygl026c,ygl026c).
strain(ygl026c).
has_proposition(trial_on_rich_growthrate_ygl026c_1,trial_on_rich_growthrate_ygl026c_1_design).
design(trial_on_rich_growthrate_ygl026c_1_design).
has_proposition(trial_on_rich_growthrate_ygl026c_1_design,trial_on_rich_growthrate_ygl026c_1_factor).
factor(trial_on_rich_growthrate_ygl026c_1_factor).
has_representation(trial_on_rich_growthrate_ygl026c_1_factor,'presence or absence of ygl026c').
has_input(trial_on_rich_growthrate_ygl026c_1,trial_on_rich_growthrate_ygl026c_1_data).
data(trial_on_rich_growthrate_ygl026c_1_data).
has_part(trial_on_rich_growthrate_ygl026c_1_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_ygl026c_1_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_ygl026c_1_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_ygl026c_1,'nature-loop3_expt001-plate003').
plate('nature-loop3_expt001-plate003').
has_proposition(trial_on_rich_growthrate_ygl026c_1,trial_on_rich_growthrate_ygl026c_1_result).
result(trial_on_rich_growthrate_ygl026c_1_result).
has_part(trial_on_rich_growthrate_ygl026c_1_result,trial_on_rich_growthrate_ygl026c_1_result_1).
has_representation(trial_on_rich_growthrate_ygl026c_1_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_ygl026c_1_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_ygl026c_1_result_1,trial_on_rich_growthrate_ygl026c_1_result_1_proc).
procedure(trial_on_rich_growthrate_ygl026c_1_result_1_proc).
has_representation(trial_on_rich_growthrate_ygl026c_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ygl026c_1_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_ygl026c_1_result,trial_on_rich_growthrate_ygl026c_1_result_2).
has_representation(trial_on_rich_growthrate_ygl026c_1_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_ygl026c_1_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_ygl026c_1_result_2,trial_on_rich_growthrate_ygl026c_1_result_2_proc).
procedure(trial_on_rich_growthrate_ygl026c_1_result_2_proc).
has_representation(trial_on_rich_growthrate_ygl026c_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ygl026c_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_ygl026c_2,trial_on_rich_growthrate_ygl026c_2_design).
design(trial_on_rich_growthrate_ygl026c_2_design).
has_proposition(trial_on_rich_growthrate_ygl026c_2_design,trial_on_rich_growthrate_ygl026c_2_factor).
factor(trial_on_rich_growthrate_ygl026c_2_factor).
has_representation(trial_on_rich_growthrate_ygl026c_2_factor,'presence or absence of ygl026c').
has_input(trial_on_rich_growthrate_ygl026c_2,trial_on_rich_growthrate_ygl026c_2_data).
data(trial_on_rich_growthrate_ygl026c_2_data).
has_part(trial_on_rich_growthrate_ygl026c_2_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_ygl026c_2_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_ygl026c_2_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_ygl026c_2,'nature-loop3_expt002-plate006').
plate('nature-loop3_expt002-plate006').
has_proposition(trial_on_rich_growthrate_ygl026c_2,trial_on_rich_growthrate_ygl026c_2_result).
result(trial_on_rich_growthrate_ygl026c_2_result).
has_part(trial_on_rich_growthrate_ygl026c_2_result,trial_on_rich_growthrate_ygl026c_2_result_1).
has_representation(trial_on_rich_growthrate_ygl026c_2_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_ygl026c_2_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_ygl026c_2_result_1,trial_on_rich_growthrate_ygl026c_2_result_1_proc).
procedure(trial_on_rich_growthrate_ygl026c_2_result_1_proc).
has_representation(trial_on_rich_growthrate_ygl026c_2_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ygl026c_2_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_ygl026c_2_result,trial_on_rich_growthrate_ygl026c_2_result_2).
has_representation(trial_on_rich_growthrate_ygl026c_2_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_ygl026c_2_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_ygl026c_2_result_2,trial_on_rich_growthrate_ygl026c_2_result_2_proc).
procedure(trial_on_rich_growthrate_ygl026c_2_result_2_proc).
has_representation(trial_on_rich_growthrate_ygl026c_2_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ygl026c_2_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_ygl026c_3,trial_on_rich_growthrate_ygl026c_3_design).
design(trial_on_rich_growthrate_ygl026c_3_design).
has_proposition(trial_on_rich_growthrate_ygl026c_3_design,trial_on_rich_growthrate_ygl026c_3_factor).
factor(trial_on_rich_growthrate_ygl026c_3_factor).
has_representation(trial_on_rich_growthrate_ygl026c_3_factor,'presence or absence of ygl026c').
has_input(trial_on_rich_growthrate_ygl026c_3,trial_on_rich_growthrate_ygl026c_3_data).
data(trial_on_rich_growthrate_ygl026c_3_data).
has_part(trial_on_rich_growthrate_ygl026c_3_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_ygl026c_3_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_ygl026c_3_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_ygl026c_3,'nature-loop3_expt003-plate003').
plate('nature-loop3_expt003-plate003').
has_proposition(trial_on_rich_growthrate_ygl026c_3,trial_on_rich_growthrate_ygl026c_3_result).
result(trial_on_rich_growthrate_ygl026c_3_result).
has_part(trial_on_rich_growthrate_ygl026c_3_result,trial_on_rich_growthrate_ygl026c_3_result_1).
has_representation(trial_on_rich_growthrate_ygl026c_3_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_ygl026c_3_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_ygl026c_3_result_1,trial_on_rich_growthrate_ygl026c_3_result_1_proc).
procedure(trial_on_rich_growthrate_ygl026c_3_result_1_proc).
has_representation(trial_on_rich_growthrate_ygl026c_3_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ygl026c_3_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_ygl026c_3_result,trial_on_rich_growthrate_ygl026c_3_result_2).
has_representation(trial_on_rich_growthrate_ygl026c_3_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_ygl026c_3_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_ygl026c_3_result_2,trial_on_rich_growthrate_ygl026c_3_result_2_proc).
procedure(trial_on_rich_growthrate_ygl026c_3_result_2_proc).
has_representation(trial_on_rich_growthrate_ygl026c_3_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ygl026c_3_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_ygl026c_4,trial_on_rich_growthrate_ygl026c_4_design).
design(trial_on_rich_growthrate_ygl026c_4_design).
has_proposition(trial_on_rich_growthrate_ygl026c_4_design,trial_on_rich_growthrate_ygl026c_4_factor).
factor(trial_on_rich_growthrate_ygl026c_4_factor).
has_representation(trial_on_rich_growthrate_ygl026c_4_factor,'presence or absence of ygl026c').
has_input(trial_on_rich_growthrate_ygl026c_4,trial_on_rich_growthrate_ygl026c_4_data).
data(trial_on_rich_growthrate_ygl026c_4_data).
has_part(trial_on_rich_growthrate_ygl026c_4_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_ygl026c_4_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_ygl026c_4_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_ygl026c_4,'nature-loop3_expt004-plate006').
plate('nature-loop3_expt004-plate006').
has_proposition(trial_on_rich_growthrate_ygl026c_4,trial_on_rich_growthrate_ygl026c_4_result).
result(trial_on_rich_growthrate_ygl026c_4_result).
has_part(trial_on_rich_growthrate_ygl026c_4_result,trial_on_rich_growthrate_ygl026c_4_result_1).
has_representation(trial_on_rich_growthrate_ygl026c_4_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_ygl026c_4_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_ygl026c_4_result_1,trial_on_rich_growthrate_ygl026c_4_result_1_proc).
procedure(trial_on_rich_growthrate_ygl026c_4_result_1_proc).
has_representation(trial_on_rich_growthrate_ygl026c_4_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ygl026c_4_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_ygl026c_4_result,trial_on_rich_growthrate_ygl026c_4_result_2).
has_representation(trial_on_rich_growthrate_ygl026c_4_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_ygl026c_4_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_ygl026c_4_result_2,trial_on_rich_growthrate_ygl026c_4_result_2_proc).
procedure(trial_on_rich_growthrate_ygl026c_4_result_2_proc).
has_representation(trial_on_rich_growthrate_ygl026c_4_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ygl026c_4_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_ygl026c_5,trial_on_rich_growthrate_ygl026c_5_design).
design(trial_on_rich_growthrate_ygl026c_5_design).
has_proposition(trial_on_rich_growthrate_ygl026c_5_design,trial_on_rich_growthrate_ygl026c_5_factor).
factor(trial_on_rich_growthrate_ygl026c_5_factor).
has_representation(trial_on_rich_growthrate_ygl026c_5_factor,'presence or absence of ygl026c').
has_input(trial_on_rich_growthrate_ygl026c_5,trial_on_rich_growthrate_ygl026c_5_data).
data(trial_on_rich_growthrate_ygl026c_5_data).
has_part(trial_on_rich_growthrate_ygl026c_5_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_ygl026c_5_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_ygl026c_5_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_ygl026c_5,'nature-loop3_expt005-plate006').
plate('nature-loop3_expt005-plate006').
has_proposition(trial_on_rich_growthrate_ygl026c_5,trial_on_rich_growthrate_ygl026c_5_result).
result(trial_on_rich_growthrate_ygl026c_5_result).
has_part(trial_on_rich_growthrate_ygl026c_5_result,trial_on_rich_growthrate_ygl026c_5_result_1).
has_representation(trial_on_rich_growthrate_ygl026c_5_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_ygl026c_5_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_ygl026c_5_result_1,trial_on_rich_growthrate_ygl026c_5_result_1_proc).
procedure(trial_on_rich_growthrate_ygl026c_5_result_1_proc).
has_representation(trial_on_rich_growthrate_ygl026c_5_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ygl026c_5_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_ygl026c_5_result,trial_on_rich_growthrate_ygl026c_5_result_2).
has_representation(trial_on_rich_growthrate_ygl026c_5_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_ygl026c_5_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_ygl026c_5_result_2,trial_on_rich_growthrate_ygl026c_5_result_2_proc).
procedure(trial_on_rich_growthrate_ygl026c_5_result_2_proc).
has_representation(trial_on_rich_growthrate_ygl026c_5_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ygl026c_5_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_ygl026c_6,trial_on_rich_growthrate_ygl026c_6_design).
design(trial_on_rich_growthrate_ygl026c_6_design).
has_proposition(trial_on_rich_growthrate_ygl026c_6_design,trial_on_rich_growthrate_ygl026c_6_factor).
factor(trial_on_rich_growthrate_ygl026c_6_factor).
has_representation(trial_on_rich_growthrate_ygl026c_6_factor,'presence or absence of ygl026c').
has_input(trial_on_rich_growthrate_ygl026c_6,trial_on_rich_growthrate_ygl026c_6_data).
data(trial_on_rich_growthrate_ygl026c_6_data).
has_part(trial_on_rich_growthrate_ygl026c_6_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_ygl026c_6_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_ygl026c_6_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_ygl026c_6,'nature-loop1_expt001-plate003').
plate('nature-loop1_expt001-plate003').
has_proposition(trial_on_rich_growthrate_ygl026c_6,trial_on_rich_growthrate_ygl026c_6_result).
result(trial_on_rich_growthrate_ygl026c_6_result).
has_part(trial_on_rich_growthrate_ygl026c_6_result,trial_on_rich_growthrate_ygl026c_6_result_1).
has_representation(trial_on_rich_growthrate_ygl026c_6_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_ygl026c_6_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_ygl026c_6_result_1,trial_on_rich_growthrate_ygl026c_6_result_1_proc).
procedure(trial_on_rich_growthrate_ygl026c_6_result_1_proc).
has_representation(trial_on_rich_growthrate_ygl026c_6_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ygl026c_6_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_ygl026c_6_result,trial_on_rich_growthrate_ygl026c_6_result_2).
has_representation(trial_on_rich_growthrate_ygl026c_6_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_ygl026c_6_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_ygl026c_6_result_2,trial_on_rich_growthrate_ygl026c_6_result_2_proc).
procedure(trial_on_rich_growthrate_ygl026c_6_result_2_proc).
has_representation(trial_on_rich_growthrate_ygl026c_6_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ygl026c_6_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_ygl026c_7,trial_on_rich_growthrate_ygl026c_7_design).
design(trial_on_rich_growthrate_ygl026c_7_design).
has_proposition(trial_on_rich_growthrate_ygl026c_7_design,trial_on_rich_growthrate_ygl026c_7_factor).
factor(trial_on_rich_growthrate_ygl026c_7_factor).
has_representation(trial_on_rich_growthrate_ygl026c_7_factor,'presence or absence of ygl026c').
has_input(trial_on_rich_growthrate_ygl026c_7,trial_on_rich_growthrate_ygl026c_7_data).
data(trial_on_rich_growthrate_ygl026c_7_data).
has_part(trial_on_rich_growthrate_ygl026c_7_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_ygl026c_7_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_ygl026c_7_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_ygl026c_7,'nature-loop2_expt001-plate005').
plate('nature-loop2_expt001-plate005').
has_proposition(trial_on_rich_growthrate_ygl026c_7,trial_on_rich_growthrate_ygl026c_7_result).
result(trial_on_rich_growthrate_ygl026c_7_result).
has_part(trial_on_rich_growthrate_ygl026c_7_result,trial_on_rich_growthrate_ygl026c_7_result_1).
has_representation(trial_on_rich_growthrate_ygl026c_7_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_ygl026c_7_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_ygl026c_7_result_1,trial_on_rich_growthrate_ygl026c_7_result_1_proc).
procedure(trial_on_rich_growthrate_ygl026c_7_result_1_proc).
has_representation(trial_on_rich_growthrate_ygl026c_7_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ygl026c_7_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_ygl026c_7_result,trial_on_rich_growthrate_ygl026c_7_result_2).
has_representation(trial_on_rich_growthrate_ygl026c_7_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_ygl026c_7_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_ygl026c_7_result_2,trial_on_rich_growthrate_ygl026c_7_result_2_proc).
procedure(trial_on_rich_growthrate_ygl026c_7_result_2_proc).
has_representation(trial_on_rich_growthrate_ygl026c_7_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ygl026c_7_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_ygl026c_8,trial_on_rich_growthrate_ygl026c_8_design).
design(trial_on_rich_growthrate_ygl026c_8_design).
has_proposition(trial_on_rich_growthrate_ygl026c_8_design,trial_on_rich_growthrate_ygl026c_8_factor).
factor(trial_on_rich_growthrate_ygl026c_8_factor).
has_representation(trial_on_rich_growthrate_ygl026c_8_factor,'presence or absence of ygl026c').
has_input(trial_on_rich_growthrate_ygl026c_8,trial_on_rich_growthrate_ygl026c_8_data).
data(trial_on_rich_growthrate_ygl026c_8_data).
has_part(trial_on_rich_growthrate_ygl026c_8_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_ygl026c_8_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_ygl026c_8_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_ygl026c_8,'nature-loop3_expt006-plate005').
plate('nature-loop3_expt006-plate005').
has_proposition(trial_on_rich_growthrate_ygl026c_8,trial_on_rich_growthrate_ygl026c_8_result).
result(trial_on_rich_growthrate_ygl026c_8_result).
has_part(trial_on_rich_growthrate_ygl026c_8_result,trial_on_rich_growthrate_ygl026c_8_result_1).
has_representation(trial_on_rich_growthrate_ygl026c_8_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_ygl026c_8_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_ygl026c_8_result_1,trial_on_rich_growthrate_ygl026c_8_result_1_proc).
procedure(trial_on_rich_growthrate_ygl026c_8_result_1_proc).
has_representation(trial_on_rich_growthrate_ygl026c_8_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ygl026c_8_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_ygl026c_8_result,trial_on_rich_growthrate_ygl026c_8_result_2).
has_representation(trial_on_rich_growthrate_ygl026c_8_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_ygl026c_8_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_ygl026c_8_result_2,trial_on_rich_growthrate_ygl026c_8_result_2_proc).
procedure(trial_on_rich_growthrate_ygl026c_8_result_2_proc).
has_representation(trial_on_rich_growthrate_ygl026c_8_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ygl026c_8_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_ygl026c,trial_on_rich_growthrate_ygl026c_results).
result(trial_on_rich_growthrate_ygl026c_results).
has_part(trial_on_rich_growthrate_ygl026c_results,trial_on_rich_growthrate_ygl026c_results_1).
has_representation(trial_on_rich_growthrate_ygl026c_results_1,'median of knockout medians missing ygl026c').
text_representation('median of knockout medians missing ygl026c').
has_proposition(trial_on_rich_growthrate_ygl026c_results_1,trial_on_rich_growthrate_ygl026c_results_1_proc).
procedure(trial_on_rich_growthrate_ygl026c_results_1_proc).
has_proposition(trial_on_rich_growthrate_ygl026c_results_1_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_rich_growthrate_ygl026c_results,trial_on_rich_growthrate_ygl026c_results_2).
has_representation(trial_on_rich_growthrate_ygl026c_results_2,'median of wild type medians').
text_representation('median of wild type medians').
has_proposition(trial_on_rich_growthrate_ygl026c_results_2,trial_on_rich_growthrate_ygl026c_results_2_proc).
procedure(trial_on_rich_growthrate_ygl026c_results_2_proc).
has_proposition(trial_on_rich_growthrate_ygl026c_results_2_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_rich_growthrate_ygl026c_results,trial_on_rich_growthrate_ygl026c_results_3).
has_representation(trial_on_rich_growthrate_ygl026c_results_3,'difference between trial_on_rich_growthrate_ygl026c_results_1 and trial_on_rich_growthrate_ygl026c_results_2').
text_representation('difference between trial_on_rich_growthrate_ygl026c_results_1 and trial_on_rich_growthrate_ygl026c_results_2').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_result).
result(study_on_rich_growthrate_result).
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_1).
has_representation(study_on_rich_growthrate_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_rich_growthrate_result_1,'results/wr_kr_growth_rate.csv').
link('results/wr_kr_growth_rate.csv').
has_proposition(study_on_rich_growthrate_result_1,study_on_rich_growthrate_result_1_proc).
procedure(study_on_rich_growthrate_result_1_proc).
has_proposition(study_on_rich_growthrate_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_2).
has_representation(study_on_rich_growthrate_result_2,'bar graph (histogram) plotting study_on_rich_growthrate_result_1').
text_representation('bar graph (histogram) plotting study_on_rich_growthrate_result_1').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate1.tiff').
link('results/kr_wr_growth_rate1.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate2.tiff').
link('results/kr_wr_growth_rate2.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/overlayed_growth_rate.tiff').
link('results/overlayed_growth_rate.tiff').
has_proposition(study_on_rich_growthrate_result_2,study_on_rich_growthrate_result_2_proc).
procedure(study_on_rich_growthrate_result_2_proc).
has_proposition(study_on_rich_growthrate_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_conclusion).
conclusion(study_on_rich_growthrate_conclusion).
has_representation(study_on_rich_growthrate_conclusion,'The knockouts have higher growth rate in rich than the wild type').
text_representation('The knockouts have higher growth rate in rich than the wild type').
has_proposition(study_on_rich_growthrate_conclusion,'obtain statistical mode of study_on_rich_growthrate_result_1').
procedure('obtain statistical mode of study_on_rich_growthrate_result_1').
text_representation('obtain statistical mode of study_on_rich_growthrate_result_1').
has_part(study_on_rich_growthrate,trial_on_rich_growthrate_ydr354w).
trial(trial_on_rich_growthrate_ydr354w).
has_agent(trial_on_rich_growthrate_ydr354w,ydr354w).
strain(ydr354w).
has_proposition(trial_on_rich_growthrate_ydr354w_1,trial_on_rich_growthrate_ydr354w_1_design).
design(trial_on_rich_growthrate_ydr354w_1_design).
has_proposition(trial_on_rich_growthrate_ydr354w_1_design,trial_on_rich_growthrate_ydr354w_1_factor).
factor(trial_on_rich_growthrate_ydr354w_1_factor).
has_representation(trial_on_rich_growthrate_ydr354w_1_factor,'presence or absence of ydr354w').
has_input(trial_on_rich_growthrate_ydr354w_1,trial_on_rich_growthrate_ydr354w_1_data).
data(trial_on_rich_growthrate_ydr354w_1_data).
has_part(trial_on_rich_growthrate_ydr354w_1_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_ydr354w_1_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_ydr354w_1_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_ydr354w_1,'nature-loop3_expt001-plate005').
plate('nature-loop3_expt001-plate005').
has_proposition(trial_on_rich_growthrate_ydr354w_1,trial_on_rich_growthrate_ydr354w_1_result).
result(trial_on_rich_growthrate_ydr354w_1_result).
has_part(trial_on_rich_growthrate_ydr354w_1_result,trial_on_rich_growthrate_ydr354w_1_result_1).
has_representation(trial_on_rich_growthrate_ydr354w_1_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_ydr354w_1_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_ydr354w_1_result_1,trial_on_rich_growthrate_ydr354w_1_result_1_proc).
procedure(trial_on_rich_growthrate_ydr354w_1_result_1_proc).
has_representation(trial_on_rich_growthrate_ydr354w_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ydr354w_1_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_ydr354w_1_result,trial_on_rich_growthrate_ydr354w_1_result_2).
has_representation(trial_on_rich_growthrate_ydr354w_1_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_ydr354w_1_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_ydr354w_1_result_2,trial_on_rich_growthrate_ydr354w_1_result_2_proc).
procedure(trial_on_rich_growthrate_ydr354w_1_result_2_proc).
has_representation(trial_on_rich_growthrate_ydr354w_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ydr354w_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_ydr354w_2,trial_on_rich_growthrate_ydr354w_2_design).
design(trial_on_rich_growthrate_ydr354w_2_design).
has_proposition(trial_on_rich_growthrate_ydr354w_2_design,trial_on_rich_growthrate_ydr354w_2_factor).
factor(trial_on_rich_growthrate_ydr354w_2_factor).
has_representation(trial_on_rich_growthrate_ydr354w_2_factor,'presence or absence of ydr354w').
has_input(trial_on_rich_growthrate_ydr354w_2,trial_on_rich_growthrate_ydr354w_2_data).
data(trial_on_rich_growthrate_ydr354w_2_data).
has_part(trial_on_rich_growthrate_ydr354w_2_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_ydr354w_2_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_ydr354w_2_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_ydr354w_2,'nature-loop3_expt002-plate004').
plate('nature-loop3_expt002-plate004').
has_proposition(trial_on_rich_growthrate_ydr354w_2,trial_on_rich_growthrate_ydr354w_2_result).
result(trial_on_rich_growthrate_ydr354w_2_result).
has_part(trial_on_rich_growthrate_ydr354w_2_result,trial_on_rich_growthrate_ydr354w_2_result_1).
has_representation(trial_on_rich_growthrate_ydr354w_2_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_ydr354w_2_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_ydr354w_2_result_1,trial_on_rich_growthrate_ydr354w_2_result_1_proc).
procedure(trial_on_rich_growthrate_ydr354w_2_result_1_proc).
has_representation(trial_on_rich_growthrate_ydr354w_2_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ydr354w_2_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_ydr354w_2_result,trial_on_rich_growthrate_ydr354w_2_result_2).
has_representation(trial_on_rich_growthrate_ydr354w_2_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_ydr354w_2_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_ydr354w_2_result_2,trial_on_rich_growthrate_ydr354w_2_result_2_proc).
procedure(trial_on_rich_growthrate_ydr354w_2_result_2_proc).
has_representation(trial_on_rich_growthrate_ydr354w_2_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ydr354w_2_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_ydr354w_3,trial_on_rich_growthrate_ydr354w_3_design).
design(trial_on_rich_growthrate_ydr354w_3_design).
has_proposition(trial_on_rich_growthrate_ydr354w_3_design,trial_on_rich_growthrate_ydr354w_3_factor).
factor(trial_on_rich_growthrate_ydr354w_3_factor).
has_representation(trial_on_rich_growthrate_ydr354w_3_factor,'presence or absence of ydr354w').
has_input(trial_on_rich_growthrate_ydr354w_3,trial_on_rich_growthrate_ydr354w_3_data).
data(trial_on_rich_growthrate_ydr354w_3_data).
has_part(trial_on_rich_growthrate_ydr354w_3_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_ydr354w_3_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_ydr354w_3_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_ydr354w_3,'nature-loop3_expt003-plate005').
plate('nature-loop3_expt003-plate005').
has_proposition(trial_on_rich_growthrate_ydr354w_3,trial_on_rich_growthrate_ydr354w_3_result).
result(trial_on_rich_growthrate_ydr354w_3_result).
has_part(trial_on_rich_growthrate_ydr354w_3_result,trial_on_rich_growthrate_ydr354w_3_result_1).
has_representation(trial_on_rich_growthrate_ydr354w_3_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_ydr354w_3_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_ydr354w_3_result_1,trial_on_rich_growthrate_ydr354w_3_result_1_proc).
procedure(trial_on_rich_growthrate_ydr354w_3_result_1_proc).
has_representation(trial_on_rich_growthrate_ydr354w_3_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ydr354w_3_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_ydr354w_3_result,trial_on_rich_growthrate_ydr354w_3_result_2).
has_representation(trial_on_rich_growthrate_ydr354w_3_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_ydr354w_3_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_ydr354w_3_result_2,trial_on_rich_growthrate_ydr354w_3_result_2_proc).
procedure(trial_on_rich_growthrate_ydr354w_3_result_2_proc).
has_representation(trial_on_rich_growthrate_ydr354w_3_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ydr354w_3_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_ydr354w_4,trial_on_rich_growthrate_ydr354w_4_design).
design(trial_on_rich_growthrate_ydr354w_4_design).
has_proposition(trial_on_rich_growthrate_ydr354w_4_design,trial_on_rich_growthrate_ydr354w_4_factor).
factor(trial_on_rich_growthrate_ydr354w_4_factor).
has_representation(trial_on_rich_growthrate_ydr354w_4_factor,'presence or absence of ydr354w').
has_input(trial_on_rich_growthrate_ydr354w_4,trial_on_rich_growthrate_ydr354w_4_data).
data(trial_on_rich_growthrate_ydr354w_4_data).
has_part(trial_on_rich_growthrate_ydr354w_4_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_ydr354w_4_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_ydr354w_4_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_ydr354w_4,'nature-loop3_expt004-plate004').
plate('nature-loop3_expt004-plate004').
has_proposition(trial_on_rich_growthrate_ydr354w_4,trial_on_rich_growthrate_ydr354w_4_result).
result(trial_on_rich_growthrate_ydr354w_4_result).
has_part(trial_on_rich_growthrate_ydr354w_4_result,trial_on_rich_growthrate_ydr354w_4_result_1).
has_representation(trial_on_rich_growthrate_ydr354w_4_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_ydr354w_4_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_ydr354w_4_result_1,trial_on_rich_growthrate_ydr354w_4_result_1_proc).
procedure(trial_on_rich_growthrate_ydr354w_4_result_1_proc).
has_representation(trial_on_rich_growthrate_ydr354w_4_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ydr354w_4_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_ydr354w_4_result,trial_on_rich_growthrate_ydr354w_4_result_2).
has_representation(trial_on_rich_growthrate_ydr354w_4_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_ydr354w_4_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_ydr354w_4_result_2,trial_on_rich_growthrate_ydr354w_4_result_2_proc).
procedure(trial_on_rich_growthrate_ydr354w_4_result_2_proc).
has_representation(trial_on_rich_growthrate_ydr354w_4_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ydr354w_4_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_ydr354w_5,trial_on_rich_growthrate_ydr354w_5_design).
design(trial_on_rich_growthrate_ydr354w_5_design).
has_proposition(trial_on_rich_growthrate_ydr354w_5_design,trial_on_rich_growthrate_ydr354w_5_factor).
factor(trial_on_rich_growthrate_ydr354w_5_factor).
has_representation(trial_on_rich_growthrate_ydr354w_5_factor,'presence or absence of ydr354w').
has_input(trial_on_rich_growthrate_ydr354w_5,trial_on_rich_growthrate_ydr354w_5_data).
data(trial_on_rich_growthrate_ydr354w_5_data).
has_part(trial_on_rich_growthrate_ydr354w_5_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_ydr354w_5_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_ydr354w_5_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_ydr354w_5,'nature-loop3_expt005-plate004').
plate('nature-loop3_expt005-plate004').
has_proposition(trial_on_rich_growthrate_ydr354w_5,trial_on_rich_growthrate_ydr354w_5_result).
result(trial_on_rich_growthrate_ydr354w_5_result).
has_part(trial_on_rich_growthrate_ydr354w_5_result,trial_on_rich_growthrate_ydr354w_5_result_1).
has_representation(trial_on_rich_growthrate_ydr354w_5_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_ydr354w_5_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_ydr354w_5_result_1,trial_on_rich_growthrate_ydr354w_5_result_1_proc).
procedure(trial_on_rich_growthrate_ydr354w_5_result_1_proc).
has_representation(trial_on_rich_growthrate_ydr354w_5_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ydr354w_5_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_ydr354w_5_result,trial_on_rich_growthrate_ydr354w_5_result_2).
has_representation(trial_on_rich_growthrate_ydr354w_5_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_ydr354w_5_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_ydr354w_5_result_2,trial_on_rich_growthrate_ydr354w_5_result_2_proc).
procedure(trial_on_rich_growthrate_ydr354w_5_result_2_proc).
has_representation(trial_on_rich_growthrate_ydr354w_5_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ydr354w_5_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_ydr354w_6,trial_on_rich_growthrate_ydr354w_6_design).
design(trial_on_rich_growthrate_ydr354w_6_design).
has_proposition(trial_on_rich_growthrate_ydr354w_6_design,trial_on_rich_growthrate_ydr354w_6_factor).
factor(trial_on_rich_growthrate_ydr354w_6_factor).
has_representation(trial_on_rich_growthrate_ydr354w_6_factor,'presence or absence of ydr354w').
has_input(trial_on_rich_growthrate_ydr354w_6,trial_on_rich_growthrate_ydr354w_6_data).
data(trial_on_rich_growthrate_ydr354w_6_data).
has_part(trial_on_rich_growthrate_ydr354w_6_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_ydr354w_6_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_ydr354w_6_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_ydr354w_6,'nature-loop1_expt001-plate005').
plate('nature-loop1_expt001-plate005').
has_proposition(trial_on_rich_growthrate_ydr354w_6,trial_on_rich_growthrate_ydr354w_6_result).
result(trial_on_rich_growthrate_ydr354w_6_result).
has_part(trial_on_rich_growthrate_ydr354w_6_result,trial_on_rich_growthrate_ydr354w_6_result_1).
has_representation(trial_on_rich_growthrate_ydr354w_6_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_ydr354w_6_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_ydr354w_6_result_1,trial_on_rich_growthrate_ydr354w_6_result_1_proc).
procedure(trial_on_rich_growthrate_ydr354w_6_result_1_proc).
has_representation(trial_on_rich_growthrate_ydr354w_6_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ydr354w_6_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_ydr354w_6_result,trial_on_rich_growthrate_ydr354w_6_result_2).
has_representation(trial_on_rich_growthrate_ydr354w_6_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_ydr354w_6_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_ydr354w_6_result_2,trial_on_rich_growthrate_ydr354w_6_result_2_proc).
procedure(trial_on_rich_growthrate_ydr354w_6_result_2_proc).
has_representation(trial_on_rich_growthrate_ydr354w_6_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ydr354w_6_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_ydr354w_7,trial_on_rich_growthrate_ydr354w_7_design).
design(trial_on_rich_growthrate_ydr354w_7_design).
has_proposition(trial_on_rich_growthrate_ydr354w_7_design,trial_on_rich_growthrate_ydr354w_7_factor).
factor(trial_on_rich_growthrate_ydr354w_7_factor).
has_representation(trial_on_rich_growthrate_ydr354w_7_factor,'presence or absence of ydr354w').
has_input(trial_on_rich_growthrate_ydr354w_7,trial_on_rich_growthrate_ydr354w_7_data).
data(trial_on_rich_growthrate_ydr354w_7_data).
has_part(trial_on_rich_growthrate_ydr354w_7_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_ydr354w_7_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_ydr354w_7_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_ydr354w_7,'nature-loop2_expt001-plate004').
plate('nature-loop2_expt001-plate004').
has_proposition(trial_on_rich_growthrate_ydr354w_7,trial_on_rich_growthrate_ydr354w_7_result).
result(trial_on_rich_growthrate_ydr354w_7_result).
has_part(trial_on_rich_growthrate_ydr354w_7_result,trial_on_rich_growthrate_ydr354w_7_result_1).
has_representation(trial_on_rich_growthrate_ydr354w_7_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_ydr354w_7_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_ydr354w_7_result_1,trial_on_rich_growthrate_ydr354w_7_result_1_proc).
procedure(trial_on_rich_growthrate_ydr354w_7_result_1_proc).
has_representation(trial_on_rich_growthrate_ydr354w_7_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ydr354w_7_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_ydr354w_7_result,trial_on_rich_growthrate_ydr354w_7_result_2).
has_representation(trial_on_rich_growthrate_ydr354w_7_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_ydr354w_7_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_ydr354w_7_result_2,trial_on_rich_growthrate_ydr354w_7_result_2_proc).
procedure(trial_on_rich_growthrate_ydr354w_7_result_2_proc).
has_representation(trial_on_rich_growthrate_ydr354w_7_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ydr354w_7_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_ydr354w_8,trial_on_rich_growthrate_ydr354w_8_design).
design(trial_on_rich_growthrate_ydr354w_8_design).
has_proposition(trial_on_rich_growthrate_ydr354w_8_design,trial_on_rich_growthrate_ydr354w_8_factor).
factor(trial_on_rich_growthrate_ydr354w_8_factor).
has_representation(trial_on_rich_growthrate_ydr354w_8_factor,'presence or absence of ydr354w').
has_input(trial_on_rich_growthrate_ydr354w_8,trial_on_rich_growthrate_ydr354w_8_data).
data(trial_on_rich_growthrate_ydr354w_8_data).
has_part(trial_on_rich_growthrate_ydr354w_8_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_ydr354w_8_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_ydr354w_8_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_ydr354w_8,'nature-loop3_expt006-plate003').
plate('nature-loop3_expt006-plate003').
has_proposition(trial_on_rich_growthrate_ydr354w_8,trial_on_rich_growthrate_ydr354w_8_result).
result(trial_on_rich_growthrate_ydr354w_8_result).
has_part(trial_on_rich_growthrate_ydr354w_8_result,trial_on_rich_growthrate_ydr354w_8_result_1).
has_representation(trial_on_rich_growthrate_ydr354w_8_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_ydr354w_8_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_ydr354w_8_result_1,trial_on_rich_growthrate_ydr354w_8_result_1_proc).
procedure(trial_on_rich_growthrate_ydr354w_8_result_1_proc).
has_representation(trial_on_rich_growthrate_ydr354w_8_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ydr354w_8_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_ydr354w_8_result,trial_on_rich_growthrate_ydr354w_8_result_2).
has_representation(trial_on_rich_growthrate_ydr354w_8_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_ydr354w_8_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_ydr354w_8_result_2,trial_on_rich_growthrate_ydr354w_8_result_2_proc).
procedure(trial_on_rich_growthrate_ydr354w_8_result_2_proc).
has_representation(trial_on_rich_growthrate_ydr354w_8_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ydr354w_8_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_ydr354w,trial_on_rich_growthrate_ydr354w_results).
result(trial_on_rich_growthrate_ydr354w_results).
has_part(trial_on_rich_growthrate_ydr354w_results,trial_on_rich_growthrate_ydr354w_results_1).
has_representation(trial_on_rich_growthrate_ydr354w_results_1,'median of knockout medians missing ydr354w').
text_representation('median of knockout medians missing ydr354w').
has_proposition(trial_on_rich_growthrate_ydr354w_results_1,trial_on_rich_growthrate_ydr354w_results_1_proc).
procedure(trial_on_rich_growthrate_ydr354w_results_1_proc).
has_proposition(trial_on_rich_growthrate_ydr354w_results_1_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_rich_growthrate_ydr354w_results,trial_on_rich_growthrate_ydr354w_results_2).
has_representation(trial_on_rich_growthrate_ydr354w_results_2,'median of wild type medians').
text_representation('median of wild type medians').
has_proposition(trial_on_rich_growthrate_ydr354w_results_2,trial_on_rich_growthrate_ydr354w_results_2_proc).
procedure(trial_on_rich_growthrate_ydr354w_results_2_proc).
has_proposition(trial_on_rich_growthrate_ydr354w_results_2_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_rich_growthrate_ydr354w_results,trial_on_rich_growthrate_ydr354w_results_3).
has_representation(trial_on_rich_growthrate_ydr354w_results_3,'difference between trial_on_rich_growthrate_ydr354w_results_1 and trial_on_rich_growthrate_ydr354w_results_2').
text_representation('difference between trial_on_rich_growthrate_ydr354w_results_1 and trial_on_rich_growthrate_ydr354w_results_2').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_result).
result(study_on_rich_growthrate_result).
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_1).
has_representation(study_on_rich_growthrate_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_rich_growthrate_result_1,'results/wr_kr_growth_rate.csv').
link('results/wr_kr_growth_rate.csv').
has_proposition(study_on_rich_growthrate_result_1,study_on_rich_growthrate_result_1_proc).
procedure(study_on_rich_growthrate_result_1_proc).
has_proposition(study_on_rich_growthrate_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_2).
has_representation(study_on_rich_growthrate_result_2,'bar graph (histogram) plotting study_on_rich_growthrate_result_1').
text_representation('bar graph (histogram) plotting study_on_rich_growthrate_result_1').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate1.tiff').
link('results/kr_wr_growth_rate1.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate2.tiff').
link('results/kr_wr_growth_rate2.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/overlayed_growth_rate.tiff').
link('results/overlayed_growth_rate.tiff').
has_proposition(study_on_rich_growthrate_result_2,study_on_rich_growthrate_result_2_proc).
procedure(study_on_rich_growthrate_result_2_proc).
has_proposition(study_on_rich_growthrate_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_conclusion).
conclusion(study_on_rich_growthrate_conclusion).
has_representation(study_on_rich_growthrate_conclusion,'The knockouts have higher growth rate in rich than the wild type').
text_representation('The knockouts have higher growth rate in rich than the wild type').
has_proposition(study_on_rich_growthrate_conclusion,'obtain statistical mode of study_on_rich_growthrate_result_1').
procedure('obtain statistical mode of study_on_rich_growthrate_result_1').
text_representation('obtain statistical mode of study_on_rich_growthrate_result_1').
has_part(study_on_rich_growthrate,trial_on_rich_growthrate_yer090w).
trial(trial_on_rich_growthrate_yer090w).
has_agent(trial_on_rich_growthrate_yer090w,yer090w).
strain(yer090w).
has_proposition(trial_on_rich_growthrate_yer090w_1,trial_on_rich_growthrate_yer090w_1_design).
design(trial_on_rich_growthrate_yer090w_1_design).
has_proposition(trial_on_rich_growthrate_yer090w_1_design,trial_on_rich_growthrate_yer090w_1_factor).
factor(trial_on_rich_growthrate_yer090w_1_factor).
has_representation(trial_on_rich_growthrate_yer090w_1_factor,'presence or absence of yer090w').
has_input(trial_on_rich_growthrate_yer090w_1,trial_on_rich_growthrate_yer090w_1_data).
data(trial_on_rich_growthrate_yer090w_1_data).
has_part(trial_on_rich_growthrate_yer090w_1_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_yer090w_1_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_yer090w_1_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_yer090w_1,'nature-loop3_expt001-plate004').
plate('nature-loop3_expt001-plate004').
has_proposition(trial_on_rich_growthrate_yer090w_1,trial_on_rich_growthrate_yer090w_1_result).
result(trial_on_rich_growthrate_yer090w_1_result).
has_part(trial_on_rich_growthrate_yer090w_1_result,trial_on_rich_growthrate_yer090w_1_result_1).
has_representation(trial_on_rich_growthrate_yer090w_1_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_yer090w_1_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_yer090w_1_result_1,trial_on_rich_growthrate_yer090w_1_result_1_proc).
procedure(trial_on_rich_growthrate_yer090w_1_result_1_proc).
has_representation(trial_on_rich_growthrate_yer090w_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_yer090w_1_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_yer090w_1_result,trial_on_rich_growthrate_yer090w_1_result_2).
has_representation(trial_on_rich_growthrate_yer090w_1_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_yer090w_1_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_yer090w_1_result_2,trial_on_rich_growthrate_yer090w_1_result_2_proc).
procedure(trial_on_rich_growthrate_yer090w_1_result_2_proc).
has_representation(trial_on_rich_growthrate_yer090w_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_yer090w_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_yer090w_2,trial_on_rich_growthrate_yer090w_2_design).
design(trial_on_rich_growthrate_yer090w_2_design).
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factor(trial_on_rich_growthrate_yer090w_2_factor).
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has_input(trial_on_rich_growthrate_yer090w_2,trial_on_rich_growthrate_yer090w_2_data).
data(trial_on_rich_growthrate_yer090w_2_data).
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has_part(trial_on_rich_growthrate_yer090w_2_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_yer090w_2_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_yer090w_2,'nature-loop3_expt002-plate005').
plate('nature-loop3_expt002-plate005').
has_proposition(trial_on_rich_growthrate_yer090w_2,trial_on_rich_growthrate_yer090w_2_result).
result(trial_on_rich_growthrate_yer090w_2_result).
has_part(trial_on_rich_growthrate_yer090w_2_result,trial_on_rich_growthrate_yer090w_2_result_1).
has_representation(trial_on_rich_growthrate_yer090w_2_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_yer090w_2_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_yer090w_2_result_1,trial_on_rich_growthrate_yer090w_2_result_1_proc).
procedure(trial_on_rich_growthrate_yer090w_2_result_1_proc).
has_representation(trial_on_rich_growthrate_yer090w_2_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_yer090w_2_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_yer090w_2_result,trial_on_rich_growthrate_yer090w_2_result_2).
has_representation(trial_on_rich_growthrate_yer090w_2_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_yer090w_2_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_yer090w_2_result_2,trial_on_rich_growthrate_yer090w_2_result_2_proc).
procedure(trial_on_rich_growthrate_yer090w_2_result_2_proc).
has_representation(trial_on_rich_growthrate_yer090w_2_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_yer090w_2_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_yer090w_3,trial_on_rich_growthrate_yer090w_3_design).
design(trial_on_rich_growthrate_yer090w_3_design).
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factor(trial_on_rich_growthrate_yer090w_3_factor).
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data(trial_on_rich_growthrate_yer090w_3_data).
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has_part(trial_on_rich_growthrate_yer090w_3_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_yer090w_3_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_yer090w_3,'nature-loop3_expt003-plate004').
plate('nature-loop3_expt003-plate004').
has_proposition(trial_on_rich_growthrate_yer090w_3,trial_on_rich_growthrate_yer090w_3_result).
result(trial_on_rich_growthrate_yer090w_3_result).
has_part(trial_on_rich_growthrate_yer090w_3_result,trial_on_rich_growthrate_yer090w_3_result_1).
has_representation(trial_on_rich_growthrate_yer090w_3_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_yer090w_3_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_yer090w_3_result_1,trial_on_rich_growthrate_yer090w_3_result_1_proc).
procedure(trial_on_rich_growthrate_yer090w_3_result_1_proc).
has_representation(trial_on_rich_growthrate_yer090w_3_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_yer090w_3_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_yer090w_3_result,trial_on_rich_growthrate_yer090w_3_result_2).
has_representation(trial_on_rich_growthrate_yer090w_3_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_yer090w_3_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_yer090w_3_result_2,trial_on_rich_growthrate_yer090w_3_result_2_proc).
procedure(trial_on_rich_growthrate_yer090w_3_result_2_proc).
has_representation(trial_on_rich_growthrate_yer090w_3_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
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link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_yer090w_4,trial_on_rich_growthrate_yer090w_4_design).
design(trial_on_rich_growthrate_yer090w_4_design).
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factor(trial_on_rich_growthrate_yer090w_4_factor).
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has_input(trial_on_rich_growthrate_yer090w_4,trial_on_rich_growthrate_yer090w_4_data).
data(trial_on_rich_growthrate_yer090w_4_data).
has_part(trial_on_rich_growthrate_yer090w_4_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_yer090w_4_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_yer090w_4_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_yer090w_4,'nature-loop3_expt004-plate005').
plate('nature-loop3_expt004-plate005').
has_proposition(trial_on_rich_growthrate_yer090w_4,trial_on_rich_growthrate_yer090w_4_result).
result(trial_on_rich_growthrate_yer090w_4_result).
has_part(trial_on_rich_growthrate_yer090w_4_result,trial_on_rich_growthrate_yer090w_4_result_1).
has_representation(trial_on_rich_growthrate_yer090w_4_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_yer090w_4_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_yer090w_4_result_1,trial_on_rich_growthrate_yer090w_4_result_1_proc).
procedure(trial_on_rich_growthrate_yer090w_4_result_1_proc).
has_representation(trial_on_rich_growthrate_yer090w_4_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_yer090w_4_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_yer090w_4_result,trial_on_rich_growthrate_yer090w_4_result_2).
has_representation(trial_on_rich_growthrate_yer090w_4_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_yer090w_4_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_yer090w_4_result_2,trial_on_rich_growthrate_yer090w_4_result_2_proc).
procedure(trial_on_rich_growthrate_yer090w_4_result_2_proc).
has_representation(trial_on_rich_growthrate_yer090w_4_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_yer090w_4_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_yer090w_5,trial_on_rich_growthrate_yer090w_5_design).
design(trial_on_rich_growthrate_yer090w_5_design).
has_proposition(trial_on_rich_growthrate_yer090w_5_design,trial_on_rich_growthrate_yer090w_5_factor).
factor(trial_on_rich_growthrate_yer090w_5_factor).
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has_input(trial_on_rich_growthrate_yer090w_5,trial_on_rich_growthrate_yer090w_5_data).
data(trial_on_rich_growthrate_yer090w_5_data).
has_part(trial_on_rich_growthrate_yer090w_5_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_yer090w_5_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_yer090w_5_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_yer090w_5,'nature-loop3_expt005-plate005').
plate('nature-loop3_expt005-plate005').
has_proposition(trial_on_rich_growthrate_yer090w_5,trial_on_rich_growthrate_yer090w_5_result).
result(trial_on_rich_growthrate_yer090w_5_result).
has_part(trial_on_rich_growthrate_yer090w_5_result,trial_on_rich_growthrate_yer090w_5_result_1).
has_representation(trial_on_rich_growthrate_yer090w_5_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_yer090w_5_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_yer090w_5_result_1,trial_on_rich_growthrate_yer090w_5_result_1_proc).
procedure(trial_on_rich_growthrate_yer090w_5_result_1_proc).
has_representation(trial_on_rich_growthrate_yer090w_5_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_yer090w_5_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_yer090w_5_result,trial_on_rich_growthrate_yer090w_5_result_2).
has_representation(trial_on_rich_growthrate_yer090w_5_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_yer090w_5_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_yer090w_5_result_2,trial_on_rich_growthrate_yer090w_5_result_2_proc).
procedure(trial_on_rich_growthrate_yer090w_5_result_2_proc).
has_representation(trial_on_rich_growthrate_yer090w_5_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_yer090w_5_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_yer090w_6,trial_on_rich_growthrate_yer090w_6_design).
design(trial_on_rich_growthrate_yer090w_6_design).
has_proposition(trial_on_rich_growthrate_yer090w_6_design,trial_on_rich_growthrate_yer090w_6_factor).
factor(trial_on_rich_growthrate_yer090w_6_factor).
has_representation(trial_on_rich_growthrate_yer090w_6_factor,'presence or absence of yer090w').
has_input(trial_on_rich_growthrate_yer090w_6,trial_on_rich_growthrate_yer090w_6_data).
data(trial_on_rich_growthrate_yer090w_6_data).
has_part(trial_on_rich_growthrate_yer090w_6_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_yer090w_6_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_yer090w_6_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_yer090w_6,'nature-loop1_expt001-plate004').
plate('nature-loop1_expt001-plate004').
has_proposition(trial_on_rich_growthrate_yer090w_6,trial_on_rich_growthrate_yer090w_6_result).
result(trial_on_rich_growthrate_yer090w_6_result).
has_part(trial_on_rich_growthrate_yer090w_6_result,trial_on_rich_growthrate_yer090w_6_result_1).
has_representation(trial_on_rich_growthrate_yer090w_6_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_yer090w_6_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_yer090w_6_result_1,trial_on_rich_growthrate_yer090w_6_result_1_proc).
procedure(trial_on_rich_growthrate_yer090w_6_result_1_proc).
has_representation(trial_on_rich_growthrate_yer090w_6_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_yer090w_6_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_yer090w_6_result,trial_on_rich_growthrate_yer090w_6_result_2).
has_representation(trial_on_rich_growthrate_yer090w_6_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_yer090w_6_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_yer090w_6_result_2,trial_on_rich_growthrate_yer090w_6_result_2_proc).
procedure(trial_on_rich_growthrate_yer090w_6_result_2_proc).
has_representation(trial_on_rich_growthrate_yer090w_6_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_yer090w_6_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_yer090w_7,trial_on_rich_growthrate_yer090w_7_design).
design(trial_on_rich_growthrate_yer090w_7_design).
has_proposition(trial_on_rich_growthrate_yer090w_7_design,trial_on_rich_growthrate_yer090w_7_factor).
factor(trial_on_rich_growthrate_yer090w_7_factor).
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has_input(trial_on_rich_growthrate_yer090w_7,trial_on_rich_growthrate_yer090w_7_data).
data(trial_on_rich_growthrate_yer090w_7_data).
has_part(trial_on_rich_growthrate_yer090w_7_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_yer090w_7_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_yer090w_7_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_yer090w_7,'nature-loop2_expt001-plate007').
plate('nature-loop2_expt001-plate007').
has_proposition(trial_on_rich_growthrate_yer090w_7,trial_on_rich_growthrate_yer090w_7_result).
result(trial_on_rich_growthrate_yer090w_7_result).
has_part(trial_on_rich_growthrate_yer090w_7_result,trial_on_rich_growthrate_yer090w_7_result_1).
has_representation(trial_on_rich_growthrate_yer090w_7_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_yer090w_7_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_yer090w_7_result_1,trial_on_rich_growthrate_yer090w_7_result_1_proc).
procedure(trial_on_rich_growthrate_yer090w_7_result_1_proc).
has_representation(trial_on_rich_growthrate_yer090w_7_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_yer090w_7_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_yer090w_7_result,trial_on_rich_growthrate_yer090w_7_result_2).
has_representation(trial_on_rich_growthrate_yer090w_7_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_yer090w_7_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_yer090w_7_result_2,trial_on_rich_growthrate_yer090w_7_result_2_proc).
procedure(trial_on_rich_growthrate_yer090w_7_result_2_proc).
has_representation(trial_on_rich_growthrate_yer090w_7_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_yer090w_7_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_yer090w_8,trial_on_rich_growthrate_yer090w_8_design).
design(trial_on_rich_growthrate_yer090w_8_design).
has_proposition(trial_on_rich_growthrate_yer090w_8_design,trial_on_rich_growthrate_yer090w_8_factor).
factor(trial_on_rich_growthrate_yer090w_8_factor).
has_representation(trial_on_rich_growthrate_yer090w_8_factor,'presence or absence of yer090w').
has_input(trial_on_rich_growthrate_yer090w_8,trial_on_rich_growthrate_yer090w_8_data).
data(trial_on_rich_growthrate_yer090w_8_data).
has_part(trial_on_rich_growthrate_yer090w_8_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_yer090w_8_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_yer090w_8_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_yer090w_8,'nature-loop3_expt006-plate004').
plate('nature-loop3_expt006-plate004').
has_proposition(trial_on_rich_growthrate_yer090w_8,trial_on_rich_growthrate_yer090w_8_result).
result(trial_on_rich_growthrate_yer090w_8_result).
has_part(trial_on_rich_growthrate_yer090w_8_result,trial_on_rich_growthrate_yer090w_8_result_1).
has_representation(trial_on_rich_growthrate_yer090w_8_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_yer090w_8_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_yer090w_8_result_1,trial_on_rich_growthrate_yer090w_8_result_1_proc).
procedure(trial_on_rich_growthrate_yer090w_8_result_1_proc).
has_representation(trial_on_rich_growthrate_yer090w_8_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_yer090w_8_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_yer090w_8_result,trial_on_rich_growthrate_yer090w_8_result_2).
has_representation(trial_on_rich_growthrate_yer090w_8_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_yer090w_8_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_yer090w_8_result_2,trial_on_rich_growthrate_yer090w_8_result_2_proc).
procedure(trial_on_rich_growthrate_yer090w_8_result_2_proc).
has_representation(trial_on_rich_growthrate_yer090w_8_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_yer090w_8_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_yer090w,trial_on_rich_growthrate_yer090w_results).
result(trial_on_rich_growthrate_yer090w_results).
has_part(trial_on_rich_growthrate_yer090w_results,trial_on_rich_growthrate_yer090w_results_1).
has_representation(trial_on_rich_growthrate_yer090w_results_1,'median of knockout medians missing yer090w').
text_representation('median of knockout medians missing yer090w').
has_proposition(trial_on_rich_growthrate_yer090w_results_1,trial_on_rich_growthrate_yer090w_results_1_proc).
procedure(trial_on_rich_growthrate_yer090w_results_1_proc).
has_proposition(trial_on_rich_growthrate_yer090w_results_1_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_rich_growthrate_yer090w_results,trial_on_rich_growthrate_yer090w_results_2).
has_representation(trial_on_rich_growthrate_yer090w_results_2,'median of wild type medians').
text_representation('median of wild type medians').
has_proposition(trial_on_rich_growthrate_yer090w_results_2,trial_on_rich_growthrate_yer090w_results_2_proc).
procedure(trial_on_rich_growthrate_yer090w_results_2_proc).
has_proposition(trial_on_rich_growthrate_yer090w_results_2_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_rich_growthrate_yer090w_results,trial_on_rich_growthrate_yer090w_results_3).
has_representation(trial_on_rich_growthrate_yer090w_results_3,'difference between trial_on_rich_growthrate_yer090w_results_1 and trial_on_rich_growthrate_yer090w_results_2').
text_representation('difference between trial_on_rich_growthrate_yer090w_results_1 and trial_on_rich_growthrate_yer090w_results_2').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_result).
result(study_on_rich_growthrate_result).
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_1).
has_representation(study_on_rich_growthrate_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_rich_growthrate_result_1,'results/wr_kr_growth_rate.csv').
link('results/wr_kr_growth_rate.csv').
has_proposition(study_on_rich_growthrate_result_1,study_on_rich_growthrate_result_1_proc).
procedure(study_on_rich_growthrate_result_1_proc).
has_proposition(study_on_rich_growthrate_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_2).
has_representation(study_on_rich_growthrate_result_2,'bar graph (histogram) plotting study_on_rich_growthrate_result_1').
text_representation('bar graph (histogram) plotting study_on_rich_growthrate_result_1').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate1.tiff').
link('results/kr_wr_growth_rate1.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate2.tiff').
link('results/kr_wr_growth_rate2.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/overlayed_growth_rate.tiff').
link('results/overlayed_growth_rate.tiff').
has_proposition(study_on_rich_growthrate_result_2,study_on_rich_growthrate_result_2_proc).
procedure(study_on_rich_growthrate_result_2_proc).
has_proposition(study_on_rich_growthrate_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_conclusion).
conclusion(study_on_rich_growthrate_conclusion).
has_representation(study_on_rich_growthrate_conclusion,'The knockouts have higher growth rate in rich than the wild type').
text_representation('The knockouts have higher growth rate in rich than the wild type').
has_proposition(study_on_rich_growthrate_conclusion,'obtain statistical mode of study_on_rich_growthrate_result_1').
procedure('obtain statistical mode of study_on_rich_growthrate_result_1').
text_representation('obtain statistical mode of study_on_rich_growthrate_result_1').
has_part(study_on_rich_growthrate,trial_on_rich_growthrate_yer183c).
trial(trial_on_rich_growthrate_yer183c).
has_agent(trial_on_rich_growthrate_yer183c,yer183c).
strain(yer183c).
has_proposition(trial_on_rich_growthrate_yer183c_1,trial_on_rich_growthrate_yer183c_1_design).
design(trial_on_rich_growthrate_yer183c_1_design).
has_proposition(trial_on_rich_growthrate_yer183c_1_design,trial_on_rich_growthrate_yer183c_1_factor).
factor(trial_on_rich_growthrate_yer183c_1_factor).
has_representation(trial_on_rich_growthrate_yer183c_1_factor,'presence or absence of yer183c').
has_input(trial_on_rich_growthrate_yer183c_1,trial_on_rich_growthrate_yer183c_1_data).
data(trial_on_rich_growthrate_yer183c_1_data).
has_part(trial_on_rich_growthrate_yer183c_1_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_yer183c_1_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_yer183c_1_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_yer183c_1,'feb07-trial1_expt001-plate001').
plate('feb07-trial1_expt001-plate001').
has_proposition(trial_on_rich_growthrate_yer183c_1,trial_on_rich_growthrate_yer183c_1_result).
result(trial_on_rich_growthrate_yer183c_1_result).
has_part(trial_on_rich_growthrate_yer183c_1_result,trial_on_rich_growthrate_yer183c_1_result_1).
has_representation(trial_on_rich_growthrate_yer183c_1_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_yer183c_1_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_yer183c_1_result_1,trial_on_rich_growthrate_yer183c_1_result_1_proc).
procedure(trial_on_rich_growthrate_yer183c_1_result_1_proc).
has_representation(trial_on_rich_growthrate_yer183c_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_yer183c_1_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_yer183c_1_result,trial_on_rich_growthrate_yer183c_1_result_2).
has_representation(trial_on_rich_growthrate_yer183c_1_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_yer183c_1_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_yer183c_1_result_2,trial_on_rich_growthrate_yer183c_1_result_2_proc).
procedure(trial_on_rich_growthrate_yer183c_1_result_2_proc).
has_representation(trial_on_rich_growthrate_yer183c_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_yer183c_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_yer183c_2,trial_on_rich_growthrate_yer183c_2_design).
design(trial_on_rich_growthrate_yer183c_2_design).
has_proposition(trial_on_rich_growthrate_yer183c_2_design,trial_on_rich_growthrate_yer183c_2_factor).
factor(trial_on_rich_growthrate_yer183c_2_factor).
has_representation(trial_on_rich_growthrate_yer183c_2_factor,'presence or absence of yer183c').
has_input(trial_on_rich_growthrate_yer183c_2,trial_on_rich_growthrate_yer183c_2_data).
data(trial_on_rich_growthrate_yer183c_2_data).
has_part(trial_on_rich_growthrate_yer183c_2_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_yer183c_2_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_yer183c_2_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_yer183c_2,'feb07-trial1_expt001-plate002').
plate('feb07-trial1_expt001-plate002').
has_proposition(trial_on_rich_growthrate_yer183c_2,trial_on_rich_growthrate_yer183c_2_result).
result(trial_on_rich_growthrate_yer183c_2_result).
has_part(trial_on_rich_growthrate_yer183c_2_result,trial_on_rich_growthrate_yer183c_2_result_1).
has_representation(trial_on_rich_growthrate_yer183c_2_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_yer183c_2_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_yer183c_2_result_1,trial_on_rich_growthrate_yer183c_2_result_1_proc).
procedure(trial_on_rich_growthrate_yer183c_2_result_1_proc).
has_representation(trial_on_rich_growthrate_yer183c_2_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_yer183c_2_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_yer183c_2_result,trial_on_rich_growthrate_yer183c_2_result_2).
has_representation(trial_on_rich_growthrate_yer183c_2_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_yer183c_2_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_yer183c_2_result_2,trial_on_rich_growthrate_yer183c_2_result_2_proc).
procedure(trial_on_rich_growthrate_yer183c_2_result_2_proc).
has_representation(trial_on_rich_growthrate_yer183c_2_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_yer183c_2_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_yer183c_3,trial_on_rich_growthrate_yer183c_3_design).
design(trial_on_rich_growthrate_yer183c_3_design).
has_proposition(trial_on_rich_growthrate_yer183c_3_design,trial_on_rich_growthrate_yer183c_3_factor).
factor(trial_on_rich_growthrate_yer183c_3_factor).
has_representation(trial_on_rich_growthrate_yer183c_3_factor,'presence or absence of yer183c').
has_input(trial_on_rich_growthrate_yer183c_3,trial_on_rich_growthrate_yer183c_3_data).
data(trial_on_rich_growthrate_yer183c_3_data).
has_part(trial_on_rich_growthrate_yer183c_3_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_yer183c_3_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_yer183c_3_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_yer183c_3,'feb07-trial1_expt001-plate003').
plate('feb07-trial1_expt001-plate003').
has_proposition(trial_on_rich_growthrate_yer183c_3,trial_on_rich_growthrate_yer183c_3_result).
result(trial_on_rich_growthrate_yer183c_3_result).
has_part(trial_on_rich_growthrate_yer183c_3_result,trial_on_rich_growthrate_yer183c_3_result_1).
has_representation(trial_on_rich_growthrate_yer183c_3_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_yer183c_3_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_yer183c_3_result_1,trial_on_rich_growthrate_yer183c_3_result_1_proc).
procedure(trial_on_rich_growthrate_yer183c_3_result_1_proc).
has_representation(trial_on_rich_growthrate_yer183c_3_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_yer183c_3_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_yer183c_3_result,trial_on_rich_growthrate_yer183c_3_result_2).
has_representation(trial_on_rich_growthrate_yer183c_3_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_yer183c_3_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_yer183c_3_result_2,trial_on_rich_growthrate_yer183c_3_result_2_proc).
procedure(trial_on_rich_growthrate_yer183c_3_result_2_proc).
has_representation(trial_on_rich_growthrate_yer183c_3_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_yer183c_3_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_yer183c_4,trial_on_rich_growthrate_yer183c_4_design).
design(trial_on_rich_growthrate_yer183c_4_design).
has_proposition(trial_on_rich_growthrate_yer183c_4_design,trial_on_rich_growthrate_yer183c_4_factor).
factor(trial_on_rich_growthrate_yer183c_4_factor).
has_representation(trial_on_rich_growthrate_yer183c_4_factor,'presence or absence of yer183c').
has_input(trial_on_rich_growthrate_yer183c_4,trial_on_rich_growthrate_yer183c_4_data).
data(trial_on_rich_growthrate_yer183c_4_data).
has_part(trial_on_rich_growthrate_yer183c_4_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_yer183c_4_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_yer183c_4_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_yer183c_4,'feb07-trial1_expt001-plate004').
plate('feb07-trial1_expt001-plate004').
has_proposition(trial_on_rich_growthrate_yer183c_4,trial_on_rich_growthrate_yer183c_4_result).
result(trial_on_rich_growthrate_yer183c_4_result).
has_part(trial_on_rich_growthrate_yer183c_4_result,trial_on_rich_growthrate_yer183c_4_result_1).
has_representation(trial_on_rich_growthrate_yer183c_4_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_yer183c_4_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_yer183c_4_result_1,trial_on_rich_growthrate_yer183c_4_result_1_proc).
procedure(trial_on_rich_growthrate_yer183c_4_result_1_proc).
has_representation(trial_on_rich_growthrate_yer183c_4_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_yer183c_4_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_yer183c_4_result,trial_on_rich_growthrate_yer183c_4_result_2).
has_representation(trial_on_rich_growthrate_yer183c_4_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_yer183c_4_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_yer183c_4_result_2,trial_on_rich_growthrate_yer183c_4_result_2_proc).
procedure(trial_on_rich_growthrate_yer183c_4_result_2_proc).
has_representation(trial_on_rich_growthrate_yer183c_4_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_yer183c_4_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_yer183c,trial_on_rich_growthrate_yer183c_results).
result(trial_on_rich_growthrate_yer183c_results).
has_part(trial_on_rich_growthrate_yer183c_results,trial_on_rich_growthrate_yer183c_results_1).
has_representation(trial_on_rich_growthrate_yer183c_results_1,'median of knockout medians missing yer183c').
text_representation('median of knockout medians missing yer183c').
has_proposition(trial_on_rich_growthrate_yer183c_results_1,trial_on_rich_growthrate_yer183c_results_1_proc).
procedure(trial_on_rich_growthrate_yer183c_results_1_proc).
has_proposition(trial_on_rich_growthrate_yer183c_results_1_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_rich_growthrate_yer183c_results,trial_on_rich_growthrate_yer183c_results_2).
has_representation(trial_on_rich_growthrate_yer183c_results_2,'median of wild type medians').
text_representation('median of wild type medians').
has_proposition(trial_on_rich_growthrate_yer183c_results_2,trial_on_rich_growthrate_yer183c_results_2_proc).
procedure(trial_on_rich_growthrate_yer183c_results_2_proc).
has_proposition(trial_on_rich_growthrate_yer183c_results_2_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_rich_growthrate_yer183c_results,trial_on_rich_growthrate_yer183c_results_3).
has_representation(trial_on_rich_growthrate_yer183c_results_3,'difference between trial_on_rich_growthrate_yer183c_results_1 and trial_on_rich_growthrate_yer183c_results_2').
text_representation('difference between trial_on_rich_growthrate_yer183c_results_1 and trial_on_rich_growthrate_yer183c_results_2').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_result).
result(study_on_rich_growthrate_result).
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_1).
has_representation(study_on_rich_growthrate_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_rich_growthrate_result_1,'results/wr_kr_growth_rate.csv').
link('results/wr_kr_growth_rate.csv').
has_proposition(study_on_rich_growthrate_result_1,study_on_rich_growthrate_result_1_proc).
procedure(study_on_rich_growthrate_result_1_proc).
has_proposition(study_on_rich_growthrate_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_2).
has_representation(study_on_rich_growthrate_result_2,'bar graph (histogram) plotting study_on_rich_growthrate_result_1').
text_representation('bar graph (histogram) plotting study_on_rich_growthrate_result_1').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate1.tiff').
link('results/kr_wr_growth_rate1.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate2.tiff').
link('results/kr_wr_growth_rate2.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/overlayed_growth_rate.tiff').
link('results/overlayed_growth_rate.tiff').
has_proposition(study_on_rich_growthrate_result_2,study_on_rich_growthrate_result_2_proc).
procedure(study_on_rich_growthrate_result_2_proc).
has_proposition(study_on_rich_growthrate_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_conclusion).
conclusion(study_on_rich_growthrate_conclusion).
has_representation(study_on_rich_growthrate_conclusion,'The knockouts have higher growth rate in rich than the wild type').
text_representation('The knockouts have higher growth rate in rich than the wild type').
has_proposition(study_on_rich_growthrate_conclusion,'obtain statistical mode of study_on_rich_growthrate_result_1').
procedure('obtain statistical mode of study_on_rich_growthrate_result_1').
text_representation('obtain statistical mode of study_on_rich_growthrate_result_1').
has_part(study_on_rich_growthrate,trial_on_rich_growthrate_yjl045w).
trial(trial_on_rich_growthrate_yjl045w).
has_agent(trial_on_rich_growthrate_yjl045w,yjl045w).
strain(yjl045w).
has_proposition(trial_on_rich_growthrate_yjl045w_1,trial_on_rich_growthrate_yjl045w_1_design).
design(trial_on_rich_growthrate_yjl045w_1_design).
has_proposition(trial_on_rich_growthrate_yjl045w_1_design,trial_on_rich_growthrate_yjl045w_1_factor).
factor(trial_on_rich_growthrate_yjl045w_1_factor).
has_representation(trial_on_rich_growthrate_yjl045w_1_factor,'presence or absence of yjl045w').
has_input(trial_on_rich_growthrate_yjl045w_1,trial_on_rich_growthrate_yjl045w_1_data).
data(trial_on_rich_growthrate_yjl045w_1_data).
has_part(trial_on_rich_growthrate_yjl045w_1_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_yjl045w_1_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_yjl045w_1_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_yjl045w_1,'mar07-trial7_expt001-plate001').
plate('mar07-trial7_expt001-plate001').
has_proposition(trial_on_rich_growthrate_yjl045w_1,trial_on_rich_growthrate_yjl045w_1_result).
result(trial_on_rich_growthrate_yjl045w_1_result).
has_part(trial_on_rich_growthrate_yjl045w_1_result,trial_on_rich_growthrate_yjl045w_1_result_1).
has_representation(trial_on_rich_growthrate_yjl045w_1_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_yjl045w_1_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_yjl045w_1_result_1,trial_on_rich_growthrate_yjl045w_1_result_1_proc).
procedure(trial_on_rich_growthrate_yjl045w_1_result_1_proc).
has_representation(trial_on_rich_growthrate_yjl045w_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_yjl045w_1_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_yjl045w_1_result,trial_on_rich_growthrate_yjl045w_1_result_2).
has_representation(trial_on_rich_growthrate_yjl045w_1_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_yjl045w_1_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_yjl045w_1_result_2,trial_on_rich_growthrate_yjl045w_1_result_2_proc).
procedure(trial_on_rich_growthrate_yjl045w_1_result_2_proc).
has_representation(trial_on_rich_growthrate_yjl045w_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_yjl045w_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_yjl045w,trial_on_rich_growthrate_yjl045w_results).
result(trial_on_rich_growthrate_yjl045w_results).
has_part(trial_on_rich_growthrate_yjl045w_results,trial_on_rich_growthrate_yjl045w_results_1).
has_representation(trial_on_rich_growthrate_yjl045w_results_1,'median of knockout medians missing yjl045w').
text_representation('median of knockout medians missing yjl045w').
has_proposition(trial_on_rich_growthrate_yjl045w_results_1,trial_on_rich_growthrate_yjl045w_results_1_proc).
procedure(trial_on_rich_growthrate_yjl045w_results_1_proc).
has_proposition(trial_on_rich_growthrate_yjl045w_results_1_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_rich_growthrate_yjl045w_results,trial_on_rich_growthrate_yjl045w_results_2).
has_representation(trial_on_rich_growthrate_yjl045w_results_2,'median of wild type medians').
text_representation('median of wild type medians').
has_proposition(trial_on_rich_growthrate_yjl045w_results_2,trial_on_rich_growthrate_yjl045w_results_2_proc).
procedure(trial_on_rich_growthrate_yjl045w_results_2_proc).
has_proposition(trial_on_rich_growthrate_yjl045w_results_2_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_rich_growthrate_yjl045w_results,trial_on_rich_growthrate_yjl045w_results_3).
has_representation(trial_on_rich_growthrate_yjl045w_results_3,'difference between trial_on_rich_growthrate_yjl045w_results_1 and trial_on_rich_growthrate_yjl045w_results_2').
text_representation('difference between trial_on_rich_growthrate_yjl045w_results_1 and trial_on_rich_growthrate_yjl045w_results_2').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_result).
result(study_on_rich_growthrate_result).
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_1).
has_representation(study_on_rich_growthrate_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_rich_growthrate_result_1,'results/wr_kr_growth_rate.csv').
link('results/wr_kr_growth_rate.csv').
has_proposition(study_on_rich_growthrate_result_1,study_on_rich_growthrate_result_1_proc).
procedure(study_on_rich_growthrate_result_1_proc).
has_proposition(study_on_rich_growthrate_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_2).
has_representation(study_on_rich_growthrate_result_2,'bar graph (histogram) plotting study_on_rich_growthrate_result_1').
text_representation('bar graph (histogram) plotting study_on_rich_growthrate_result_1').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate1.tiff').
link('results/kr_wr_growth_rate1.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate2.tiff').
link('results/kr_wr_growth_rate2.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/overlayed_growth_rate.tiff').
link('results/overlayed_growth_rate.tiff').
has_proposition(study_on_rich_growthrate_result_2,study_on_rich_growthrate_result_2_proc).
procedure(study_on_rich_growthrate_result_2_proc).
has_proposition(study_on_rich_growthrate_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_conclusion).
conclusion(study_on_rich_growthrate_conclusion).
has_representation(study_on_rich_growthrate_conclusion,'The knockouts have higher growth rate in rich than the wild type').
text_representation('The knockouts have higher growth rate in rich than the wild type').
has_proposition(study_on_rich_growthrate_conclusion,'obtain statistical mode of study_on_rich_growthrate_result_1').
procedure('obtain statistical mode of study_on_rich_growthrate_result_1').
text_representation('obtain statistical mode of study_on_rich_growthrate_result_1').
has_part(study_on_rich_growthrate,trial_on_rich_growthrate_ynl316c).
trial(trial_on_rich_growthrate_ynl316c).
has_agent(trial_on_rich_growthrate_ynl316c,ynl316c).
strain(ynl316c).
has_proposition(trial_on_rich_growthrate_ynl316c_1,trial_on_rich_growthrate_ynl316c_1_design).
design(trial_on_rich_growthrate_ynl316c_1_design).
has_proposition(trial_on_rich_growthrate_ynl316c_1_design,trial_on_rich_growthrate_ynl316c_1_factor).
factor(trial_on_rich_growthrate_ynl316c_1_factor).
has_representation(trial_on_rich_growthrate_ynl316c_1_factor,'presence or absence of ynl316c').
has_input(trial_on_rich_growthrate_ynl316c_1,trial_on_rich_growthrate_ynl316c_1_data).
data(trial_on_rich_growthrate_ynl316c_1_data).
has_part(trial_on_rich_growthrate_ynl316c_1_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_ynl316c_1_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_ynl316c_1_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_ynl316c_1,'nature-loop3_expt001-plate001').
plate('nature-loop3_expt001-plate001').
has_proposition(trial_on_rich_growthrate_ynl316c_1,trial_on_rich_growthrate_ynl316c_1_result).
result(trial_on_rich_growthrate_ynl316c_1_result).
has_part(trial_on_rich_growthrate_ynl316c_1_result,trial_on_rich_growthrate_ynl316c_1_result_1).
has_representation(trial_on_rich_growthrate_ynl316c_1_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_ynl316c_1_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_ynl316c_1_result_1,trial_on_rich_growthrate_ynl316c_1_result_1_proc).
procedure(trial_on_rich_growthrate_ynl316c_1_result_1_proc).
has_representation(trial_on_rich_growthrate_ynl316c_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ynl316c_1_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_ynl316c_1_result,trial_on_rich_growthrate_ynl316c_1_result_2).
has_representation(trial_on_rich_growthrate_ynl316c_1_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_ynl316c_1_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_ynl316c_1_result_2,trial_on_rich_growthrate_ynl316c_1_result_2_proc).
procedure(trial_on_rich_growthrate_ynl316c_1_result_2_proc).
has_representation(trial_on_rich_growthrate_ynl316c_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ynl316c_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_ynl316c_2,trial_on_rich_growthrate_ynl316c_2_design).
design(trial_on_rich_growthrate_ynl316c_2_design).
has_proposition(trial_on_rich_growthrate_ynl316c_2_design,trial_on_rich_growthrate_ynl316c_2_factor).
factor(trial_on_rich_growthrate_ynl316c_2_factor).
has_representation(trial_on_rich_growthrate_ynl316c_2_factor,'presence or absence of ynl316c').
has_input(trial_on_rich_growthrate_ynl316c_2,trial_on_rich_growthrate_ynl316c_2_data).
data(trial_on_rich_growthrate_ynl316c_2_data).
has_part(trial_on_rich_growthrate_ynl316c_2_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_ynl316c_2_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_ynl316c_2_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_ynl316c_2,'nature-loop3_expt002-plate008').
plate('nature-loop3_expt002-plate008').
has_proposition(trial_on_rich_growthrate_ynl316c_2,trial_on_rich_growthrate_ynl316c_2_result).
result(trial_on_rich_growthrate_ynl316c_2_result).
has_part(trial_on_rich_growthrate_ynl316c_2_result,trial_on_rich_growthrate_ynl316c_2_result_1).
has_representation(trial_on_rich_growthrate_ynl316c_2_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_ynl316c_2_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_ynl316c_2_result_1,trial_on_rich_growthrate_ynl316c_2_result_1_proc).
procedure(trial_on_rich_growthrate_ynl316c_2_result_1_proc).
has_representation(trial_on_rich_growthrate_ynl316c_2_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ynl316c_2_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_ynl316c_2_result,trial_on_rich_growthrate_ynl316c_2_result_2).
has_representation(trial_on_rich_growthrate_ynl316c_2_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_ynl316c_2_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_ynl316c_2_result_2,trial_on_rich_growthrate_ynl316c_2_result_2_proc).
procedure(trial_on_rich_growthrate_ynl316c_2_result_2_proc).
has_representation(trial_on_rich_growthrate_ynl316c_2_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ynl316c_2_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_ynl316c_3,trial_on_rich_growthrate_ynl316c_3_design).
design(trial_on_rich_growthrate_ynl316c_3_design).
has_proposition(trial_on_rich_growthrate_ynl316c_3_design,trial_on_rich_growthrate_ynl316c_3_factor).
factor(trial_on_rich_growthrate_ynl316c_3_factor).
has_representation(trial_on_rich_growthrate_ynl316c_3_factor,'presence or absence of ynl316c').
has_input(trial_on_rich_growthrate_ynl316c_3,trial_on_rich_growthrate_ynl316c_3_data).
data(trial_on_rich_growthrate_ynl316c_3_data).
has_part(trial_on_rich_growthrate_ynl316c_3_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_ynl316c_3_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_ynl316c_3_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_ynl316c_3,'nature-loop3_expt003-plate001').
plate('nature-loop3_expt003-plate001').
has_proposition(trial_on_rich_growthrate_ynl316c_3,trial_on_rich_growthrate_ynl316c_3_result).
result(trial_on_rich_growthrate_ynl316c_3_result).
has_part(trial_on_rich_growthrate_ynl316c_3_result,trial_on_rich_growthrate_ynl316c_3_result_1).
has_representation(trial_on_rich_growthrate_ynl316c_3_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_ynl316c_3_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_ynl316c_3_result_1,trial_on_rich_growthrate_ynl316c_3_result_1_proc).
procedure(trial_on_rich_growthrate_ynl316c_3_result_1_proc).
has_representation(trial_on_rich_growthrate_ynl316c_3_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ynl316c_3_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_ynl316c_3_result,trial_on_rich_growthrate_ynl316c_3_result_2).
has_representation(trial_on_rich_growthrate_ynl316c_3_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_ynl316c_3_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_ynl316c_3_result_2,trial_on_rich_growthrate_ynl316c_3_result_2_proc).
procedure(trial_on_rich_growthrate_ynl316c_3_result_2_proc).
has_representation(trial_on_rich_growthrate_ynl316c_3_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ynl316c_3_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_ynl316c_4,trial_on_rich_growthrate_ynl316c_4_design).
design(trial_on_rich_growthrate_ynl316c_4_design).
has_proposition(trial_on_rich_growthrate_ynl316c_4_design,trial_on_rich_growthrate_ynl316c_4_factor).
factor(trial_on_rich_growthrate_ynl316c_4_factor).
has_representation(trial_on_rich_growthrate_ynl316c_4_factor,'presence or absence of ynl316c').
has_input(trial_on_rich_growthrate_ynl316c_4,trial_on_rich_growthrate_ynl316c_4_data).
data(trial_on_rich_growthrate_ynl316c_4_data).
has_part(trial_on_rich_growthrate_ynl316c_4_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_ynl316c_4_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_ynl316c_4_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_ynl316c_4,'nature-loop3_expt004-plate008').
plate('nature-loop3_expt004-plate008').
has_proposition(trial_on_rich_growthrate_ynl316c_4,trial_on_rich_growthrate_ynl316c_4_result).
result(trial_on_rich_growthrate_ynl316c_4_result).
has_part(trial_on_rich_growthrate_ynl316c_4_result,trial_on_rich_growthrate_ynl316c_4_result_1).
has_representation(trial_on_rich_growthrate_ynl316c_4_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_ynl316c_4_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_ynl316c_4_result_1,trial_on_rich_growthrate_ynl316c_4_result_1_proc).
procedure(trial_on_rich_growthrate_ynl316c_4_result_1_proc).
has_representation(trial_on_rich_growthrate_ynl316c_4_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ynl316c_4_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_ynl316c_4_result,trial_on_rich_growthrate_ynl316c_4_result_2).
has_representation(trial_on_rich_growthrate_ynl316c_4_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_ynl316c_4_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_ynl316c_4_result_2,trial_on_rich_growthrate_ynl316c_4_result_2_proc).
procedure(trial_on_rich_growthrate_ynl316c_4_result_2_proc).
has_representation(trial_on_rich_growthrate_ynl316c_4_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ynl316c_4_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_ynl316c_5,trial_on_rich_growthrate_ynl316c_5_design).
design(trial_on_rich_growthrate_ynl316c_5_design).
has_proposition(trial_on_rich_growthrate_ynl316c_5_design,trial_on_rich_growthrate_ynl316c_5_factor).
factor(trial_on_rich_growthrate_ynl316c_5_factor).
has_representation(trial_on_rich_growthrate_ynl316c_5_factor,'presence or absence of ynl316c').
has_input(trial_on_rich_growthrate_ynl316c_5,trial_on_rich_growthrate_ynl316c_5_data).
data(trial_on_rich_growthrate_ynl316c_5_data).
has_part(trial_on_rich_growthrate_ynl316c_5_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_ynl316c_5_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_ynl316c_5_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_ynl316c_5,'nature-loop3_expt005-plate008').
plate('nature-loop3_expt005-plate008').
has_proposition(trial_on_rich_growthrate_ynl316c_5,trial_on_rich_growthrate_ynl316c_5_result).
result(trial_on_rich_growthrate_ynl316c_5_result).
has_part(trial_on_rich_growthrate_ynl316c_5_result,trial_on_rich_growthrate_ynl316c_5_result_1).
has_representation(trial_on_rich_growthrate_ynl316c_5_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_ynl316c_5_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_ynl316c_5_result_1,trial_on_rich_growthrate_ynl316c_5_result_1_proc).
procedure(trial_on_rich_growthrate_ynl316c_5_result_1_proc).
has_representation(trial_on_rich_growthrate_ynl316c_5_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ynl316c_5_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_ynl316c_5_result,trial_on_rich_growthrate_ynl316c_5_result_2).
has_representation(trial_on_rich_growthrate_ynl316c_5_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_ynl316c_5_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_ynl316c_5_result_2,trial_on_rich_growthrate_ynl316c_5_result_2_proc).
procedure(trial_on_rich_growthrate_ynl316c_5_result_2_proc).
has_representation(trial_on_rich_growthrate_ynl316c_5_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ynl316c_5_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_ynl316c_6,trial_on_rich_growthrate_ynl316c_6_design).
design(trial_on_rich_growthrate_ynl316c_6_design).
has_proposition(trial_on_rich_growthrate_ynl316c_6_design,trial_on_rich_growthrate_ynl316c_6_factor).
factor(trial_on_rich_growthrate_ynl316c_6_factor).
has_representation(trial_on_rich_growthrate_ynl316c_6_factor,'presence or absence of ynl316c').
has_input(trial_on_rich_growthrate_ynl316c_6,trial_on_rich_growthrate_ynl316c_6_data).
data(trial_on_rich_growthrate_ynl316c_6_data).
has_part(trial_on_rich_growthrate_ynl316c_6_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_ynl316c_6_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_ynl316c_6_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_ynl316c_6,'nature-loop1_expt001-plate001').
plate('nature-loop1_expt001-plate001').
has_proposition(trial_on_rich_growthrate_ynl316c_6,trial_on_rich_growthrate_ynl316c_6_result).
result(trial_on_rich_growthrate_ynl316c_6_result).
has_part(trial_on_rich_growthrate_ynl316c_6_result,trial_on_rich_growthrate_ynl316c_6_result_1).
has_representation(trial_on_rich_growthrate_ynl316c_6_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_ynl316c_6_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_ynl316c_6_result_1,trial_on_rich_growthrate_ynl316c_6_result_1_proc).
procedure(trial_on_rich_growthrate_ynl316c_6_result_1_proc).
has_representation(trial_on_rich_growthrate_ynl316c_6_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ynl316c_6_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_ynl316c_6_result,trial_on_rich_growthrate_ynl316c_6_result_2).
has_representation(trial_on_rich_growthrate_ynl316c_6_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_ynl316c_6_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_ynl316c_6_result_2,trial_on_rich_growthrate_ynl316c_6_result_2_proc).
procedure(trial_on_rich_growthrate_ynl316c_6_result_2_proc).
has_representation(trial_on_rich_growthrate_ynl316c_6_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ynl316c_6_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_ynl316c_7,trial_on_rich_growthrate_ynl316c_7_design).
design(trial_on_rich_growthrate_ynl316c_7_design).
has_proposition(trial_on_rich_growthrate_ynl316c_7_design,trial_on_rich_growthrate_ynl316c_7_factor).
factor(trial_on_rich_growthrate_ynl316c_7_factor).
has_representation(trial_on_rich_growthrate_ynl316c_7_factor,'presence or absence of ynl316c').
has_input(trial_on_rich_growthrate_ynl316c_7,trial_on_rich_growthrate_ynl316c_7_data).
data(trial_on_rich_growthrate_ynl316c_7_data).
has_part(trial_on_rich_growthrate_ynl316c_7_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_ynl316c_7_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_ynl316c_7_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_ynl316c_7,'nature-loop2_expt001-plate008').
plate('nature-loop2_expt001-plate008').
has_proposition(trial_on_rich_growthrate_ynl316c_7,trial_on_rich_growthrate_ynl316c_7_result).
result(trial_on_rich_growthrate_ynl316c_7_result).
has_part(trial_on_rich_growthrate_ynl316c_7_result,trial_on_rich_growthrate_ynl316c_7_result_1).
has_representation(trial_on_rich_growthrate_ynl316c_7_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_ynl316c_7_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_ynl316c_7_result_1,trial_on_rich_growthrate_ynl316c_7_result_1_proc).
procedure(trial_on_rich_growthrate_ynl316c_7_result_1_proc).
has_representation(trial_on_rich_growthrate_ynl316c_7_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ynl316c_7_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_ynl316c_7_result,trial_on_rich_growthrate_ynl316c_7_result_2).
has_representation(trial_on_rich_growthrate_ynl316c_7_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_ynl316c_7_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_ynl316c_7_result_2,trial_on_rich_growthrate_ynl316c_7_result_2_proc).
procedure(trial_on_rich_growthrate_ynl316c_7_result_2_proc).
has_representation(trial_on_rich_growthrate_ynl316c_7_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ynl316c_7_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_ynl316c_8,trial_on_rich_growthrate_ynl316c_8_design).
design(trial_on_rich_growthrate_ynl316c_8_design).
has_proposition(trial_on_rich_growthrate_ynl316c_8_design,trial_on_rich_growthrate_ynl316c_8_factor).
factor(trial_on_rich_growthrate_ynl316c_8_factor).
has_representation(trial_on_rich_growthrate_ynl316c_8_factor,'presence or absence of ynl316c').
has_input(trial_on_rich_growthrate_ynl316c_8,trial_on_rich_growthrate_ynl316c_8_data).
data(trial_on_rich_growthrate_ynl316c_8_data).
has_part(trial_on_rich_growthrate_ynl316c_8_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_ynl316c_8_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_ynl316c_8_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_ynl316c_8,'nature-loop3_expt006-plate007').
plate('nature-loop3_expt006-plate007').
has_proposition(trial_on_rich_growthrate_ynl316c_8,trial_on_rich_growthrate_ynl316c_8_result).
result(trial_on_rich_growthrate_ynl316c_8_result).
has_part(trial_on_rich_growthrate_ynl316c_8_result,trial_on_rich_growthrate_ynl316c_8_result_1).
has_representation(trial_on_rich_growthrate_ynl316c_8_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_ynl316c_8_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_ynl316c_8_result_1,trial_on_rich_growthrate_ynl316c_8_result_1_proc).
procedure(trial_on_rich_growthrate_ynl316c_8_result_1_proc).
has_representation(trial_on_rich_growthrate_ynl316c_8_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ynl316c_8_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_ynl316c_8_result,trial_on_rich_growthrate_ynl316c_8_result_2).
has_representation(trial_on_rich_growthrate_ynl316c_8_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_ynl316c_8_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_ynl316c_8_result_2,trial_on_rich_growthrate_ynl316c_8_result_2_proc).
procedure(trial_on_rich_growthrate_ynl316c_8_result_2_proc).
has_representation(trial_on_rich_growthrate_ynl316c_8_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ynl316c_8_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_ynl316c,trial_on_rich_growthrate_ynl316c_results).
result(trial_on_rich_growthrate_ynl316c_results).
has_part(trial_on_rich_growthrate_ynl316c_results,trial_on_rich_growthrate_ynl316c_results_1).
has_representation(trial_on_rich_growthrate_ynl316c_results_1,'median of knockout medians missing ynl316c').
text_representation('median of knockout medians missing ynl316c').
has_proposition(trial_on_rich_growthrate_ynl316c_results_1,trial_on_rich_growthrate_ynl316c_results_1_proc).
procedure(trial_on_rich_growthrate_ynl316c_results_1_proc).
has_proposition(trial_on_rich_growthrate_ynl316c_results_1_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_rich_growthrate_ynl316c_results,trial_on_rich_growthrate_ynl316c_results_2).
has_representation(trial_on_rich_growthrate_ynl316c_results_2,'median of wild type medians').
text_representation('median of wild type medians').
has_proposition(trial_on_rich_growthrate_ynl316c_results_2,trial_on_rich_growthrate_ynl316c_results_2_proc).
procedure(trial_on_rich_growthrate_ynl316c_results_2_proc).
has_proposition(trial_on_rich_growthrate_ynl316c_results_2_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_rich_growthrate_ynl316c_results,trial_on_rich_growthrate_ynl316c_results_3).
has_representation(trial_on_rich_growthrate_ynl316c_results_3,'difference between trial_on_rich_growthrate_ynl316c_results_1 and trial_on_rich_growthrate_ynl316c_results_2').
text_representation('difference between trial_on_rich_growthrate_ynl316c_results_1 and trial_on_rich_growthrate_ynl316c_results_2').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_result).
result(study_on_rich_growthrate_result).
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_1).
has_representation(study_on_rich_growthrate_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_rich_growthrate_result_1,'results/wr_kr_growth_rate.csv').
link('results/wr_kr_growth_rate.csv').
has_proposition(study_on_rich_growthrate_result_1,study_on_rich_growthrate_result_1_proc).
procedure(study_on_rich_growthrate_result_1_proc).
has_proposition(study_on_rich_growthrate_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_2).
has_representation(study_on_rich_growthrate_result_2,'bar graph (histogram) plotting study_on_rich_growthrate_result_1').
text_representation('bar graph (histogram) plotting study_on_rich_growthrate_result_1').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate1.tiff').
link('results/kr_wr_growth_rate1.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate2.tiff').
link('results/kr_wr_growth_rate2.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/overlayed_growth_rate.tiff').
link('results/overlayed_growth_rate.tiff').
has_proposition(study_on_rich_growthrate_result_2,study_on_rich_growthrate_result_2_proc).
procedure(study_on_rich_growthrate_result_2_proc).
has_proposition(study_on_rich_growthrate_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_conclusion).
conclusion(study_on_rich_growthrate_conclusion).
has_representation(study_on_rich_growthrate_conclusion,'The knockouts have higher growth rate in rich than the wild type').
text_representation('The knockouts have higher growth rate in rich than the wild type').
has_proposition(study_on_rich_growthrate_conclusion,'obtain statistical mode of study_on_rich_growthrate_result_1').
procedure('obtain statistical mode of study_on_rich_growthrate_result_1').
text_representation('obtain statistical mode of study_on_rich_growthrate_result_1').
has_part(study_on_rich_growthrate,trial_on_rich_growthrate_ydl052c).
trial(trial_on_rich_growthrate_ydl052c).
has_agent(trial_on_rich_growthrate_ydl052c,ydl052c).
strain(ydl052c).
has_proposition(trial_on_rich_growthrate_ydl052c_1,trial_on_rich_growthrate_ydl052c_1_design).
design(trial_on_rich_growthrate_ydl052c_1_design).
has_proposition(trial_on_rich_growthrate_ydl052c_1_design,trial_on_rich_growthrate_ydl052c_1_factor).
factor(trial_on_rich_growthrate_ydl052c_1_factor).
has_representation(trial_on_rich_growthrate_ydl052c_1_factor,'presence or absence of ydl052c').
has_input(trial_on_rich_growthrate_ydl052c_1,trial_on_rich_growthrate_ydl052c_1_data).
data(trial_on_rich_growthrate_ydl052c_1_data).
has_part(trial_on_rich_growthrate_ydl052c_1_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_ydl052c_1_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_ydl052c_1_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_ydl052c_1,'feb07-trial1_expt001-plate010').
plate('feb07-trial1_expt001-plate010').
has_proposition(trial_on_rich_growthrate_ydl052c_1,trial_on_rich_growthrate_ydl052c_1_result).
result(trial_on_rich_growthrate_ydl052c_1_result).
has_part(trial_on_rich_growthrate_ydl052c_1_result,trial_on_rich_growthrate_ydl052c_1_result_1).
has_representation(trial_on_rich_growthrate_ydl052c_1_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_ydl052c_1_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_ydl052c_1_result_1,trial_on_rich_growthrate_ydl052c_1_result_1_proc).
procedure(trial_on_rich_growthrate_ydl052c_1_result_1_proc).
has_representation(trial_on_rich_growthrate_ydl052c_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ydl052c_1_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_ydl052c_1_result,trial_on_rich_growthrate_ydl052c_1_result_2).
has_representation(trial_on_rich_growthrate_ydl052c_1_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_ydl052c_1_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_ydl052c_1_result_2,trial_on_rich_growthrate_ydl052c_1_result_2_proc).
procedure(trial_on_rich_growthrate_ydl052c_1_result_2_proc).
has_representation(trial_on_rich_growthrate_ydl052c_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ydl052c_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_ydl052c_2,trial_on_rich_growthrate_ydl052c_2_design).
design(trial_on_rich_growthrate_ydl052c_2_design).
has_proposition(trial_on_rich_growthrate_ydl052c_2_design,trial_on_rich_growthrate_ydl052c_2_factor).
factor(trial_on_rich_growthrate_ydl052c_2_factor).
has_representation(trial_on_rich_growthrate_ydl052c_2_factor,'presence or absence of ydl052c').
has_input(trial_on_rich_growthrate_ydl052c_2,trial_on_rich_growthrate_ydl052c_2_data).
data(trial_on_rich_growthrate_ydl052c_2_data).
has_part(trial_on_rich_growthrate_ydl052c_2_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_ydl052c_2_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_ydl052c_2_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_ydl052c_2,'mar07-trial7_expt001-plate007').
plate('mar07-trial7_expt001-plate007').
has_proposition(trial_on_rich_growthrate_ydl052c_2,trial_on_rich_growthrate_ydl052c_2_result).
result(trial_on_rich_growthrate_ydl052c_2_result).
has_part(trial_on_rich_growthrate_ydl052c_2_result,trial_on_rich_growthrate_ydl052c_2_result_1).
has_representation(trial_on_rich_growthrate_ydl052c_2_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_ydl052c_2_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_ydl052c_2_result_1,trial_on_rich_growthrate_ydl052c_2_result_1_proc).
procedure(trial_on_rich_growthrate_ydl052c_2_result_1_proc).
has_representation(trial_on_rich_growthrate_ydl052c_2_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ydl052c_2_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_ydl052c_2_result,trial_on_rich_growthrate_ydl052c_2_result_2).
has_representation(trial_on_rich_growthrate_ydl052c_2_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_ydl052c_2_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_ydl052c_2_result_2,trial_on_rich_growthrate_ydl052c_2_result_2_proc).
procedure(trial_on_rich_growthrate_ydl052c_2_result_2_proc).
has_representation(trial_on_rich_growthrate_ydl052c_2_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ydl052c_2_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_ydl052c_3,trial_on_rich_growthrate_ydl052c_3_design).
design(trial_on_rich_growthrate_ydl052c_3_design).
has_proposition(trial_on_rich_growthrate_ydl052c_3_design,trial_on_rich_growthrate_ydl052c_3_factor).
factor(trial_on_rich_growthrate_ydl052c_3_factor).
has_representation(trial_on_rich_growthrate_ydl052c_3_factor,'presence or absence of ydl052c').
has_input(trial_on_rich_growthrate_ydl052c_3,trial_on_rich_growthrate_ydl052c_3_data).
data(trial_on_rich_growthrate_ydl052c_3_data).
has_part(trial_on_rich_growthrate_ydl052c_3_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_ydl052c_3_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_ydl052c_3_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_ydl052c_3,'mar07-trial7_expt001-plate008').
plate('mar07-trial7_expt001-plate008').
has_proposition(trial_on_rich_growthrate_ydl052c_3,trial_on_rich_growthrate_ydl052c_3_result).
result(trial_on_rich_growthrate_ydl052c_3_result).
has_part(trial_on_rich_growthrate_ydl052c_3_result,trial_on_rich_growthrate_ydl052c_3_result_1).
has_representation(trial_on_rich_growthrate_ydl052c_3_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_ydl052c_3_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_ydl052c_3_result_1,trial_on_rich_growthrate_ydl052c_3_result_1_proc).
procedure(trial_on_rich_growthrate_ydl052c_3_result_1_proc).
has_representation(trial_on_rich_growthrate_ydl052c_3_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ydl052c_3_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_ydl052c_3_result,trial_on_rich_growthrate_ydl052c_3_result_2).
has_representation(trial_on_rich_growthrate_ydl052c_3_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_ydl052c_3_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_ydl052c_3_result_2,trial_on_rich_growthrate_ydl052c_3_result_2_proc).
procedure(trial_on_rich_growthrate_ydl052c_3_result_2_proc).
has_representation(trial_on_rich_growthrate_ydl052c_3_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ydl052c_3_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_ydl052c_4,trial_on_rich_growthrate_ydl052c_4_design).
design(trial_on_rich_growthrate_ydl052c_4_design).
has_proposition(trial_on_rich_growthrate_ydl052c_4_design,trial_on_rich_growthrate_ydl052c_4_factor).
factor(trial_on_rich_growthrate_ydl052c_4_factor).
has_representation(trial_on_rich_growthrate_ydl052c_4_factor,'presence or absence of ydl052c').
has_input(trial_on_rich_growthrate_ydl052c_4,trial_on_rich_growthrate_ydl052c_4_data).
data(trial_on_rich_growthrate_ydl052c_4_data).
has_part(trial_on_rich_growthrate_ydl052c_4_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_ydl052c_4_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_ydl052c_4_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_ydl052c_4,'mar07-trial8_expt001-plate001').
plate('mar07-trial8_expt001-plate001').
has_proposition(trial_on_rich_growthrate_ydl052c_4,trial_on_rich_growthrate_ydl052c_4_result).
result(trial_on_rich_growthrate_ydl052c_4_result).
has_part(trial_on_rich_growthrate_ydl052c_4_result,trial_on_rich_growthrate_ydl052c_4_result_1).
has_representation(trial_on_rich_growthrate_ydl052c_4_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_ydl052c_4_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_ydl052c_4_result_1,trial_on_rich_growthrate_ydl052c_4_result_1_proc).
procedure(trial_on_rich_growthrate_ydl052c_4_result_1_proc).
has_representation(trial_on_rich_growthrate_ydl052c_4_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ydl052c_4_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_ydl052c_4_result,trial_on_rich_growthrate_ydl052c_4_result_2).
has_representation(trial_on_rich_growthrate_ydl052c_4_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_ydl052c_4_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_ydl052c_4_result_2,trial_on_rich_growthrate_ydl052c_4_result_2_proc).
procedure(trial_on_rich_growthrate_ydl052c_4_result_2_proc).
has_representation(trial_on_rich_growthrate_ydl052c_4_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ydl052c_4_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_ydl052c_5,trial_on_rich_growthrate_ydl052c_5_design).
design(trial_on_rich_growthrate_ydl052c_5_design).
has_proposition(trial_on_rich_growthrate_ydl052c_5_design,trial_on_rich_growthrate_ydl052c_5_factor).
factor(trial_on_rich_growthrate_ydl052c_5_factor).
has_representation(trial_on_rich_growthrate_ydl052c_5_factor,'presence or absence of ydl052c').
has_input(trial_on_rich_growthrate_ydl052c_5,trial_on_rich_growthrate_ydl052c_5_data).
data(trial_on_rich_growthrate_ydl052c_5_data).
has_part(trial_on_rich_growthrate_ydl052c_5_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_ydl052c_5_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_ydl052c_5_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_ydl052c_5,'mar07-trial8_expt001-plate002').
plate('mar07-trial8_expt001-plate002').
has_proposition(trial_on_rich_growthrate_ydl052c_5,trial_on_rich_growthrate_ydl052c_5_result).
result(trial_on_rich_growthrate_ydl052c_5_result).
has_part(trial_on_rich_growthrate_ydl052c_5_result,trial_on_rich_growthrate_ydl052c_5_result_1).
has_representation(trial_on_rich_growthrate_ydl052c_5_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_ydl052c_5_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_ydl052c_5_result_1,trial_on_rich_growthrate_ydl052c_5_result_1_proc).
procedure(trial_on_rich_growthrate_ydl052c_5_result_1_proc).
has_representation(trial_on_rich_growthrate_ydl052c_5_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ydl052c_5_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_ydl052c_5_result,trial_on_rich_growthrate_ydl052c_5_result_2).
has_representation(trial_on_rich_growthrate_ydl052c_5_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_ydl052c_5_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_ydl052c_5_result_2,trial_on_rich_growthrate_ydl052c_5_result_2_proc).
procedure(trial_on_rich_growthrate_ydl052c_5_result_2_proc).
has_representation(trial_on_rich_growthrate_ydl052c_5_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ydl052c_5_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_ydl052c_6,trial_on_rich_growthrate_ydl052c_6_design).
design(trial_on_rich_growthrate_ydl052c_6_design).
has_proposition(trial_on_rich_growthrate_ydl052c_6_design,trial_on_rich_growthrate_ydl052c_6_factor).
factor(trial_on_rich_growthrate_ydl052c_6_factor).
has_representation(trial_on_rich_growthrate_ydl052c_6_factor,'presence or absence of ydl052c').
has_input(trial_on_rich_growthrate_ydl052c_6,trial_on_rich_growthrate_ydl052c_6_data).
data(trial_on_rich_growthrate_ydl052c_6_data).
has_part(trial_on_rich_growthrate_ydl052c_6_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_ydl052c_6_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_ydl052c_6_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_ydl052c_6,'mar07-trial8_expt001-plate006').
plate('mar07-trial8_expt001-plate006').
has_proposition(trial_on_rich_growthrate_ydl052c_6,trial_on_rich_growthrate_ydl052c_6_result).
result(trial_on_rich_growthrate_ydl052c_6_result).
has_part(trial_on_rich_growthrate_ydl052c_6_result,trial_on_rich_growthrate_ydl052c_6_result_1).
has_representation(trial_on_rich_growthrate_ydl052c_6_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_ydl052c_6_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_ydl052c_6_result_1,trial_on_rich_growthrate_ydl052c_6_result_1_proc).
procedure(trial_on_rich_growthrate_ydl052c_6_result_1_proc).
has_representation(trial_on_rich_growthrate_ydl052c_6_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ydl052c_6_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_ydl052c_6_result,trial_on_rich_growthrate_ydl052c_6_result_2).
has_representation(trial_on_rich_growthrate_ydl052c_6_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_ydl052c_6_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_ydl052c_6_result_2,trial_on_rich_growthrate_ydl052c_6_result_2_proc).
procedure(trial_on_rich_growthrate_ydl052c_6_result_2_proc).
has_representation(trial_on_rich_growthrate_ydl052c_6_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ydl052c_6_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_ydl052c,trial_on_rich_growthrate_ydl052c_results).
result(trial_on_rich_growthrate_ydl052c_results).
has_part(trial_on_rich_growthrate_ydl052c_results,trial_on_rich_growthrate_ydl052c_results_1).
has_representation(trial_on_rich_growthrate_ydl052c_results_1,'median of knockout medians missing ydl052c').
text_representation('median of knockout medians missing ydl052c').
has_proposition(trial_on_rich_growthrate_ydl052c_results_1,trial_on_rich_growthrate_ydl052c_results_1_proc).
procedure(trial_on_rich_growthrate_ydl052c_results_1_proc).
has_proposition(trial_on_rich_growthrate_ydl052c_results_1_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_rich_growthrate_ydl052c_results,trial_on_rich_growthrate_ydl052c_results_2).
has_representation(trial_on_rich_growthrate_ydl052c_results_2,'median of wild type medians').
text_representation('median of wild type medians').
has_proposition(trial_on_rich_growthrate_ydl052c_results_2,trial_on_rich_growthrate_ydl052c_results_2_proc).
procedure(trial_on_rich_growthrate_ydl052c_results_2_proc).
has_proposition(trial_on_rich_growthrate_ydl052c_results_2_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_rich_growthrate_ydl052c_results,trial_on_rich_growthrate_ydl052c_results_3).
has_representation(trial_on_rich_growthrate_ydl052c_results_3,'difference between trial_on_rich_growthrate_ydl052c_results_1 and trial_on_rich_growthrate_ydl052c_results_2').
text_representation('difference between trial_on_rich_growthrate_ydl052c_results_1 and trial_on_rich_growthrate_ydl052c_results_2').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_result).
result(study_on_rich_growthrate_result).
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_1).
has_representation(study_on_rich_growthrate_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_rich_growthrate_result_1,'results/wr_kr_growth_rate.csv').
link('results/wr_kr_growth_rate.csv').
has_proposition(study_on_rich_growthrate_result_1,study_on_rich_growthrate_result_1_proc).
procedure(study_on_rich_growthrate_result_1_proc).
has_proposition(study_on_rich_growthrate_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_2).
has_representation(study_on_rich_growthrate_result_2,'bar graph (histogram) plotting study_on_rich_growthrate_result_1').
text_representation('bar graph (histogram) plotting study_on_rich_growthrate_result_1').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate1.tiff').
link('results/kr_wr_growth_rate1.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate2.tiff').
link('results/kr_wr_growth_rate2.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/overlayed_growth_rate.tiff').
link('results/overlayed_growth_rate.tiff').
has_proposition(study_on_rich_growthrate_result_2,study_on_rich_growthrate_result_2_proc).
procedure(study_on_rich_growthrate_result_2_proc).
has_proposition(study_on_rich_growthrate_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_conclusion).
conclusion(study_on_rich_growthrate_conclusion).
has_representation(study_on_rich_growthrate_conclusion,'The knockouts have higher growth rate in rich than the wild type').
text_representation('The knockouts have higher growth rate in rich than the wild type').
has_proposition(study_on_rich_growthrate_conclusion,'obtain statistical mode of study_on_rich_growthrate_result_1').
procedure('obtain statistical mode of study_on_rich_growthrate_result_1').
text_representation('obtain statistical mode of study_on_rich_growthrate_result_1').
has_part(study_on_rich_growthrate,trial_on_rich_growthrate_yil033c).
trial(trial_on_rich_growthrate_yil033c).
has_agent(trial_on_rich_growthrate_yil033c,yil033c).
strain(yil033c).
has_proposition(trial_on_rich_growthrate_yil033c_1,trial_on_rich_growthrate_yil033c_1_design).
design(trial_on_rich_growthrate_yil033c_1_design).
has_proposition(trial_on_rich_growthrate_yil033c_1_design,trial_on_rich_growthrate_yil033c_1_factor).
factor(trial_on_rich_growthrate_yil033c_1_factor).
has_representation(trial_on_rich_growthrate_yil033c_1_factor,'presence or absence of yil033c').
has_input(trial_on_rich_growthrate_yil033c_1,trial_on_rich_growthrate_yil033c_1_data).
data(trial_on_rich_growthrate_yil033c_1_data).
has_part(trial_on_rich_growthrate_yil033c_1_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_yil033c_1_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_yil033c_1_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_yil033c_1,'mar07-trial5_expt001-plate001').
plate('mar07-trial5_expt001-plate001').
has_proposition(trial_on_rich_growthrate_yil033c_1,trial_on_rich_growthrate_yil033c_1_result).
result(trial_on_rich_growthrate_yil033c_1_result).
has_part(trial_on_rich_growthrate_yil033c_1_result,trial_on_rich_growthrate_yil033c_1_result_1).
has_representation(trial_on_rich_growthrate_yil033c_1_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_yil033c_1_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_yil033c_1_result_1,trial_on_rich_growthrate_yil033c_1_result_1_proc).
procedure(trial_on_rich_growthrate_yil033c_1_result_1_proc).
has_representation(trial_on_rich_growthrate_yil033c_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_yil033c_1_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_yil033c_1_result,trial_on_rich_growthrate_yil033c_1_result_2).
has_representation(trial_on_rich_growthrate_yil033c_1_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_yil033c_1_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_yil033c_1_result_2,trial_on_rich_growthrate_yil033c_1_result_2_proc).
procedure(trial_on_rich_growthrate_yil033c_1_result_2_proc).
has_representation(trial_on_rich_growthrate_yil033c_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_yil033c_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_yil033c_2,trial_on_rich_growthrate_yil033c_2_design).
design(trial_on_rich_growthrate_yil033c_2_design).
has_proposition(trial_on_rich_growthrate_yil033c_2_design,trial_on_rich_growthrate_yil033c_2_factor).
factor(trial_on_rich_growthrate_yil033c_2_factor).
has_representation(trial_on_rich_growthrate_yil033c_2_factor,'presence or absence of yil033c').
has_input(trial_on_rich_growthrate_yil033c_2,trial_on_rich_growthrate_yil033c_2_data).
data(trial_on_rich_growthrate_yil033c_2_data).
has_part(trial_on_rich_growthrate_yil033c_2_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_yil033c_2_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_yil033c_2_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_yil033c_2,'mar07-trial5_expt001-plate002').
plate('mar07-trial5_expt001-plate002').
has_proposition(trial_on_rich_growthrate_yil033c_2,trial_on_rich_growthrate_yil033c_2_result).
result(trial_on_rich_growthrate_yil033c_2_result).
has_part(trial_on_rich_growthrate_yil033c_2_result,trial_on_rich_growthrate_yil033c_2_result_1).
has_representation(trial_on_rich_growthrate_yil033c_2_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_yil033c_2_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_yil033c_2_result_1,trial_on_rich_growthrate_yil033c_2_result_1_proc).
procedure(trial_on_rich_growthrate_yil033c_2_result_1_proc).
has_representation(trial_on_rich_growthrate_yil033c_2_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_yil033c_2_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_yil033c_2_result,trial_on_rich_growthrate_yil033c_2_result_2).
has_representation(trial_on_rich_growthrate_yil033c_2_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_yil033c_2_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_yil033c_2_result_2,trial_on_rich_growthrate_yil033c_2_result_2_proc).
procedure(trial_on_rich_growthrate_yil033c_2_result_2_proc).
has_representation(trial_on_rich_growthrate_yil033c_2_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_yil033c_2_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_yil033c_3,trial_on_rich_growthrate_yil033c_3_design).
design(trial_on_rich_growthrate_yil033c_3_design).
has_proposition(trial_on_rich_growthrate_yil033c_3_design,trial_on_rich_growthrate_yil033c_3_factor).
factor(trial_on_rich_growthrate_yil033c_3_factor).
has_representation(trial_on_rich_growthrate_yil033c_3_factor,'presence or absence of yil033c').
has_input(trial_on_rich_growthrate_yil033c_3,trial_on_rich_growthrate_yil033c_3_data).
data(trial_on_rich_growthrate_yil033c_3_data).
has_part(trial_on_rich_growthrate_yil033c_3_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_yil033c_3_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_yil033c_3_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_yil033c_3,'mar07-trial5_expt001-plate003').
plate('mar07-trial5_expt001-plate003').
has_proposition(trial_on_rich_growthrate_yil033c_3,trial_on_rich_growthrate_yil033c_3_result).
result(trial_on_rich_growthrate_yil033c_3_result).
has_part(trial_on_rich_growthrate_yil033c_3_result,trial_on_rich_growthrate_yil033c_3_result_1).
has_representation(trial_on_rich_growthrate_yil033c_3_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_yil033c_3_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_yil033c_3_result_1,trial_on_rich_growthrate_yil033c_3_result_1_proc).
procedure(trial_on_rich_growthrate_yil033c_3_result_1_proc).
has_representation(trial_on_rich_growthrate_yil033c_3_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_yil033c_3_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_yil033c_3_result,trial_on_rich_growthrate_yil033c_3_result_2).
has_representation(trial_on_rich_growthrate_yil033c_3_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_yil033c_3_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_yil033c_3_result_2,trial_on_rich_growthrate_yil033c_3_result_2_proc).
procedure(trial_on_rich_growthrate_yil033c_3_result_2_proc).
has_representation(trial_on_rich_growthrate_yil033c_3_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_yil033c_3_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_yil033c_4,trial_on_rich_growthrate_yil033c_4_design).
design(trial_on_rich_growthrate_yil033c_4_design).
has_proposition(trial_on_rich_growthrate_yil033c_4_design,trial_on_rich_growthrate_yil033c_4_factor).
factor(trial_on_rich_growthrate_yil033c_4_factor).
has_representation(trial_on_rich_growthrate_yil033c_4_factor,'presence or absence of yil033c').
has_input(trial_on_rich_growthrate_yil033c_4,trial_on_rich_growthrate_yil033c_4_data).
data(trial_on_rich_growthrate_yil033c_4_data).
has_part(trial_on_rich_growthrate_yil033c_4_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_yil033c_4_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_yil033c_4_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_yil033c_4,'mar07-trial6_expt001-plate003').
plate('mar07-trial6_expt001-plate003').
has_proposition(trial_on_rich_growthrate_yil033c_4,trial_on_rich_growthrate_yil033c_4_result).
result(trial_on_rich_growthrate_yil033c_4_result).
has_part(trial_on_rich_growthrate_yil033c_4_result,trial_on_rich_growthrate_yil033c_4_result_1).
has_representation(trial_on_rich_growthrate_yil033c_4_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_yil033c_4_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_yil033c_4_result_1,trial_on_rich_growthrate_yil033c_4_result_1_proc).
procedure(trial_on_rich_growthrate_yil033c_4_result_1_proc).
has_representation(trial_on_rich_growthrate_yil033c_4_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_yil033c_4_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_yil033c_4_result,trial_on_rich_growthrate_yil033c_4_result_2).
has_representation(trial_on_rich_growthrate_yil033c_4_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_yil033c_4_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_yil033c_4_result_2,trial_on_rich_growthrate_yil033c_4_result_2_proc).
procedure(trial_on_rich_growthrate_yil033c_4_result_2_proc).
has_representation(trial_on_rich_growthrate_yil033c_4_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_yil033c_4_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_yil033c_5,trial_on_rich_growthrate_yil033c_5_design).
design(trial_on_rich_growthrate_yil033c_5_design).
has_proposition(trial_on_rich_growthrate_yil033c_5_design,trial_on_rich_growthrate_yil033c_5_factor).
factor(trial_on_rich_growthrate_yil033c_5_factor).
has_representation(trial_on_rich_growthrate_yil033c_5_factor,'presence or absence of yil033c').
has_input(trial_on_rich_growthrate_yil033c_5,trial_on_rich_growthrate_yil033c_5_data).
data(trial_on_rich_growthrate_yil033c_5_data).
has_part(trial_on_rich_growthrate_yil033c_5_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_yil033c_5_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_yil033c_5_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_yil033c_5,'mar07-trial6_expt001-plate005').
plate('mar07-trial6_expt001-plate005').
has_proposition(trial_on_rich_growthrate_yil033c_5,trial_on_rich_growthrate_yil033c_5_result).
result(trial_on_rich_growthrate_yil033c_5_result).
has_part(trial_on_rich_growthrate_yil033c_5_result,trial_on_rich_growthrate_yil033c_5_result_1).
has_representation(trial_on_rich_growthrate_yil033c_5_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_yil033c_5_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_yil033c_5_result_1,trial_on_rich_growthrate_yil033c_5_result_1_proc).
procedure(trial_on_rich_growthrate_yil033c_5_result_1_proc).
has_representation(trial_on_rich_growthrate_yil033c_5_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_yil033c_5_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_yil033c_5_result,trial_on_rich_growthrate_yil033c_5_result_2).
has_representation(trial_on_rich_growthrate_yil033c_5_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_yil033c_5_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_yil033c_5_result_2,trial_on_rich_growthrate_yil033c_5_result_2_proc).
procedure(trial_on_rich_growthrate_yil033c_5_result_2_proc).
has_representation(trial_on_rich_growthrate_yil033c_5_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_yil033c_5_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_yil033c_6,trial_on_rich_growthrate_yil033c_6_design).
design(trial_on_rich_growthrate_yil033c_6_design).
has_proposition(trial_on_rich_growthrate_yil033c_6_design,trial_on_rich_growthrate_yil033c_6_factor).
factor(trial_on_rich_growthrate_yil033c_6_factor).
has_representation(trial_on_rich_growthrate_yil033c_6_factor,'presence or absence of yil033c').
has_input(trial_on_rich_growthrate_yil033c_6,trial_on_rich_growthrate_yil033c_6_data).
data(trial_on_rich_growthrate_yil033c_6_data).
has_part(trial_on_rich_growthrate_yil033c_6_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_yil033c_6_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_yil033c_6_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_yil033c_6,'mar07-trial7_expt001-plate003').
plate('mar07-trial7_expt001-plate003').
has_proposition(trial_on_rich_growthrate_yil033c_6,trial_on_rich_growthrate_yil033c_6_result).
result(trial_on_rich_growthrate_yil033c_6_result).
has_part(trial_on_rich_growthrate_yil033c_6_result,trial_on_rich_growthrate_yil033c_6_result_1).
has_representation(trial_on_rich_growthrate_yil033c_6_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_yil033c_6_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_yil033c_6_result_1,trial_on_rich_growthrate_yil033c_6_result_1_proc).
procedure(trial_on_rich_growthrate_yil033c_6_result_1_proc).
has_representation(trial_on_rich_growthrate_yil033c_6_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_yil033c_6_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_yil033c_6_result,trial_on_rich_growthrate_yil033c_6_result_2).
has_representation(trial_on_rich_growthrate_yil033c_6_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_yil033c_6_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_yil033c_6_result_2,trial_on_rich_growthrate_yil033c_6_result_2_proc).
procedure(trial_on_rich_growthrate_yil033c_6_result_2_proc).
has_representation(trial_on_rich_growthrate_yil033c_6_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_yil033c_6_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_yil033c_7,trial_on_rich_growthrate_yil033c_7_design).
design(trial_on_rich_growthrate_yil033c_7_design).
has_proposition(trial_on_rich_growthrate_yil033c_7_design,trial_on_rich_growthrate_yil033c_7_factor).
factor(trial_on_rich_growthrate_yil033c_7_factor).
has_representation(trial_on_rich_growthrate_yil033c_7_factor,'presence or absence of yil033c').
has_input(trial_on_rich_growthrate_yil033c_7,trial_on_rich_growthrate_yil033c_7_data).
data(trial_on_rich_growthrate_yil033c_7_data).
has_part(trial_on_rich_growthrate_yil033c_7_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_yil033c_7_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_yil033c_7_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_yil033c_7,'mar07-trial7_expt001-plate005').
plate('mar07-trial7_expt001-plate005').
has_proposition(trial_on_rich_growthrate_yil033c_7,trial_on_rich_growthrate_yil033c_7_result).
result(trial_on_rich_growthrate_yil033c_7_result).
has_part(trial_on_rich_growthrate_yil033c_7_result,trial_on_rich_growthrate_yil033c_7_result_1).
has_representation(trial_on_rich_growthrate_yil033c_7_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_yil033c_7_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_yil033c_7_result_1,trial_on_rich_growthrate_yil033c_7_result_1_proc).
procedure(trial_on_rich_growthrate_yil033c_7_result_1_proc).
has_representation(trial_on_rich_growthrate_yil033c_7_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_yil033c_7_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_yil033c_7_result,trial_on_rich_growthrate_yil033c_7_result_2).
has_representation(trial_on_rich_growthrate_yil033c_7_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_yil033c_7_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_yil033c_7_result_2,trial_on_rich_growthrate_yil033c_7_result_2_proc).
procedure(trial_on_rich_growthrate_yil033c_7_result_2_proc).
has_representation(trial_on_rich_growthrate_yil033c_7_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_yil033c_7_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_yil033c_8,trial_on_rich_growthrate_yil033c_8_design).
design(trial_on_rich_growthrate_yil033c_8_design).
has_proposition(trial_on_rich_growthrate_yil033c_8_design,trial_on_rich_growthrate_yil033c_8_factor).
factor(trial_on_rich_growthrate_yil033c_8_factor).
has_representation(trial_on_rich_growthrate_yil033c_8_factor,'presence or absence of yil033c').
has_input(trial_on_rich_growthrate_yil033c_8,trial_on_rich_growthrate_yil033c_8_data).
data(trial_on_rich_growthrate_yil033c_8_data).
has_part(trial_on_rich_growthrate_yil033c_8_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_yil033c_8_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_yil033c_8_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_yil033c_8,'mar07-trial8_expt001-plate003').
plate('mar07-trial8_expt001-plate003').
has_proposition(trial_on_rich_growthrate_yil033c_8,trial_on_rich_growthrate_yil033c_8_result).
result(trial_on_rich_growthrate_yil033c_8_result).
has_part(trial_on_rich_growthrate_yil033c_8_result,trial_on_rich_growthrate_yil033c_8_result_1).
has_representation(trial_on_rich_growthrate_yil033c_8_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_yil033c_8_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_yil033c_8_result_1,trial_on_rich_growthrate_yil033c_8_result_1_proc).
procedure(trial_on_rich_growthrate_yil033c_8_result_1_proc).
has_representation(trial_on_rich_growthrate_yil033c_8_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_yil033c_8_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_yil033c_8_result,trial_on_rich_growthrate_yil033c_8_result_2).
has_representation(trial_on_rich_growthrate_yil033c_8_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_yil033c_8_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_yil033c_8_result_2,trial_on_rich_growthrate_yil033c_8_result_2_proc).
procedure(trial_on_rich_growthrate_yil033c_8_result_2_proc).
has_representation(trial_on_rich_growthrate_yil033c_8_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_yil033c_8_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_yil033c_9,trial_on_rich_growthrate_yil033c_9_design).
design(trial_on_rich_growthrate_yil033c_9_design).
has_proposition(trial_on_rich_growthrate_yil033c_9_design,trial_on_rich_growthrate_yil033c_9_factor).
factor(trial_on_rich_growthrate_yil033c_9_factor).
has_representation(trial_on_rich_growthrate_yil033c_9_factor,'presence or absence of yil033c').
has_input(trial_on_rich_growthrate_yil033c_9,trial_on_rich_growthrate_yil033c_9_data).
data(trial_on_rich_growthrate_yil033c_9_data).
has_part(trial_on_rich_growthrate_yil033c_9_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_yil033c_9_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_yil033c_9_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_yil033c_9,'mar07-trial8_expt001-plate004').
plate('mar07-trial8_expt001-plate004').
has_proposition(trial_on_rich_growthrate_yil033c_9,trial_on_rich_growthrate_yil033c_9_result).
result(trial_on_rich_growthrate_yil033c_9_result).
has_part(trial_on_rich_growthrate_yil033c_9_result,trial_on_rich_growthrate_yil033c_9_result_1).
has_representation(trial_on_rich_growthrate_yil033c_9_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_yil033c_9_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_yil033c_9_result_1,trial_on_rich_growthrate_yil033c_9_result_1_proc).
procedure(trial_on_rich_growthrate_yil033c_9_result_1_proc).
has_representation(trial_on_rich_growthrate_yil033c_9_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_yil033c_9_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_yil033c_9_result,trial_on_rich_growthrate_yil033c_9_result_2).
has_representation(trial_on_rich_growthrate_yil033c_9_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_yil033c_9_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_yil033c_9_result_2,trial_on_rich_growthrate_yil033c_9_result_2_proc).
procedure(trial_on_rich_growthrate_yil033c_9_result_2_proc).
has_representation(trial_on_rich_growthrate_yil033c_9_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_yil033c_9_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_yil033c_10,trial_on_rich_growthrate_yil033c_10_design).
design(trial_on_rich_growthrate_yil033c_10_design).
has_proposition(trial_on_rich_growthrate_yil033c_10_design,trial_on_rich_growthrate_yil033c_10_factor).
factor(trial_on_rich_growthrate_yil033c_10_factor).
has_representation(trial_on_rich_growthrate_yil033c_10_factor,'presence or absence of yil033c').
has_input(trial_on_rich_growthrate_yil033c_10,trial_on_rich_growthrate_yil033c_10_data).
data(trial_on_rich_growthrate_yil033c_10_data).
has_part(trial_on_rich_growthrate_yil033c_10_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_yil033c_10_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_yil033c_10_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_yil033c_10,'mar07-trial8_expt001-plate005').
plate('mar07-trial8_expt001-plate005').
has_proposition(trial_on_rich_growthrate_yil033c_10,trial_on_rich_growthrate_yil033c_10_result).
result(trial_on_rich_growthrate_yil033c_10_result).
has_part(trial_on_rich_growthrate_yil033c_10_result,trial_on_rich_growthrate_yil033c_10_result_1).
has_representation(trial_on_rich_growthrate_yil033c_10_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_yil033c_10_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_yil033c_10_result_1,trial_on_rich_growthrate_yil033c_10_result_1_proc).
procedure(trial_on_rich_growthrate_yil033c_10_result_1_proc).
has_representation(trial_on_rich_growthrate_yil033c_10_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_yil033c_10_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_yil033c_10_result,trial_on_rich_growthrate_yil033c_10_result_2).
has_representation(trial_on_rich_growthrate_yil033c_10_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_yil033c_10_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_yil033c_10_result_2,trial_on_rich_growthrate_yil033c_10_result_2_proc).
procedure(trial_on_rich_growthrate_yil033c_10_result_2_proc).
has_representation(trial_on_rich_growthrate_yil033c_10_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_yil033c_10_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_yil033c_11,trial_on_rich_growthrate_yil033c_11_design).
design(trial_on_rich_growthrate_yil033c_11_design).
has_proposition(trial_on_rich_growthrate_yil033c_11_design,trial_on_rich_growthrate_yil033c_11_factor).
factor(trial_on_rich_growthrate_yil033c_11_factor).
has_representation(trial_on_rich_growthrate_yil033c_11_factor,'presence or absence of yil033c').
has_input(trial_on_rich_growthrate_yil033c_11,trial_on_rich_growthrate_yil033c_11_data).
data(trial_on_rich_growthrate_yil033c_11_data).
has_part(trial_on_rich_growthrate_yil033c_11_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_yil033c_11_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_yil033c_11_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_yil033c_11,'mar07-trial8_expt001-plate007').
plate('mar07-trial8_expt001-plate007').
has_proposition(trial_on_rich_growthrate_yil033c_11,trial_on_rich_growthrate_yil033c_11_result).
result(trial_on_rich_growthrate_yil033c_11_result).
has_part(trial_on_rich_growthrate_yil033c_11_result,trial_on_rich_growthrate_yil033c_11_result_1).
has_representation(trial_on_rich_growthrate_yil033c_11_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_yil033c_11_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_yil033c_11_result_1,trial_on_rich_growthrate_yil033c_11_result_1_proc).
procedure(trial_on_rich_growthrate_yil033c_11_result_1_proc).
has_representation(trial_on_rich_growthrate_yil033c_11_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_yil033c_11_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_yil033c_11_result,trial_on_rich_growthrate_yil033c_11_result_2).
has_representation(trial_on_rich_growthrate_yil033c_11_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_yil033c_11_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_yil033c_11_result_2,trial_on_rich_growthrate_yil033c_11_result_2_proc).
procedure(trial_on_rich_growthrate_yil033c_11_result_2_proc).
has_representation(trial_on_rich_growthrate_yil033c_11_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_yil033c_11_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_yil033c,trial_on_rich_growthrate_yil033c_results).
result(trial_on_rich_growthrate_yil033c_results).
has_part(trial_on_rich_growthrate_yil033c_results,trial_on_rich_growthrate_yil033c_results_1).
has_representation(trial_on_rich_growthrate_yil033c_results_1,'median of knockout medians missing yil033c').
text_representation('median of knockout medians missing yil033c').
has_proposition(trial_on_rich_growthrate_yil033c_results_1,trial_on_rich_growthrate_yil033c_results_1_proc).
procedure(trial_on_rich_growthrate_yil033c_results_1_proc).
has_proposition(trial_on_rich_growthrate_yil033c_results_1_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_rich_growthrate_yil033c_results,trial_on_rich_growthrate_yil033c_results_2).
has_representation(trial_on_rich_growthrate_yil033c_results_2,'median of wild type medians').
text_representation('median of wild type medians').
has_proposition(trial_on_rich_growthrate_yil033c_results_2,trial_on_rich_growthrate_yil033c_results_2_proc).
procedure(trial_on_rich_growthrate_yil033c_results_2_proc).
has_proposition(trial_on_rich_growthrate_yil033c_results_2_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_rich_growthrate_yil033c_results,trial_on_rich_growthrate_yil033c_results_3).
has_representation(trial_on_rich_growthrate_yil033c_results_3,'difference between trial_on_rich_growthrate_yil033c_results_1 and trial_on_rich_growthrate_yil033c_results_2').
text_representation('difference between trial_on_rich_growthrate_yil033c_results_1 and trial_on_rich_growthrate_yil033c_results_2').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_result).
result(study_on_rich_growthrate_result).
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_1).
has_representation(study_on_rich_growthrate_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_rich_growthrate_result_1,'results/wr_kr_growth_rate.csv').
link('results/wr_kr_growth_rate.csv').
has_proposition(study_on_rich_growthrate_result_1,study_on_rich_growthrate_result_1_proc).
procedure(study_on_rich_growthrate_result_1_proc).
has_proposition(study_on_rich_growthrate_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_2).
has_representation(study_on_rich_growthrate_result_2,'bar graph (histogram) plotting study_on_rich_growthrate_result_1').
text_representation('bar graph (histogram) plotting study_on_rich_growthrate_result_1').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate1.tiff').
link('results/kr_wr_growth_rate1.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate2.tiff').
link('results/kr_wr_growth_rate2.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/overlayed_growth_rate.tiff').
link('results/overlayed_growth_rate.tiff').
has_proposition(study_on_rich_growthrate_result_2,study_on_rich_growthrate_result_2_proc).
procedure(study_on_rich_growthrate_result_2_proc).
has_proposition(study_on_rich_growthrate_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_conclusion).
conclusion(study_on_rich_growthrate_conclusion).
has_representation(study_on_rich_growthrate_conclusion,'The knockouts have higher growth rate in rich than the wild type').
text_representation('The knockouts have higher growth rate in rich than the wild type').
has_proposition(study_on_rich_growthrate_conclusion,'obtain statistical mode of study_on_rich_growthrate_result_1').
procedure('obtain statistical mode of study_on_rich_growthrate_result_1').
text_representation('obtain statistical mode of study_on_rich_growthrate_result_1').
has_part(study_on_rich_growthrate,trial_on_rich_growthrate_ybr166c).
trial(trial_on_rich_growthrate_ybr166c).
has_agent(trial_on_rich_growthrate_ybr166c,ybr166c).
strain(ybr166c).
has_proposition(trial_on_rich_growthrate_ybr166c_1,trial_on_rich_growthrate_ybr166c_1_design).
design(trial_on_rich_growthrate_ybr166c_1_design).
has_proposition(trial_on_rich_growthrate_ybr166c_1_design,trial_on_rich_growthrate_ybr166c_1_factor).
factor(trial_on_rich_growthrate_ybr166c_1_factor).
has_representation(trial_on_rich_growthrate_ybr166c_1_factor,'presence or absence of ybr166c').
has_input(trial_on_rich_growthrate_ybr166c_1,trial_on_rich_growthrate_ybr166c_1_data).
data(trial_on_rich_growthrate_ybr166c_1_data).
has_part(trial_on_rich_growthrate_ybr166c_1_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_ybr166c_1_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_ybr166c_1_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_ybr166c_1,'nature-loop3_expt001-plate008').
plate('nature-loop3_expt001-plate008').
has_proposition(trial_on_rich_growthrate_ybr166c_1,trial_on_rich_growthrate_ybr166c_1_result).
result(trial_on_rich_growthrate_ybr166c_1_result).
has_part(trial_on_rich_growthrate_ybr166c_1_result,trial_on_rich_growthrate_ybr166c_1_result_1).
has_representation(trial_on_rich_growthrate_ybr166c_1_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_ybr166c_1_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_ybr166c_1_result_1,trial_on_rich_growthrate_ybr166c_1_result_1_proc).
procedure(trial_on_rich_growthrate_ybr166c_1_result_1_proc).
has_representation(trial_on_rich_growthrate_ybr166c_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ybr166c_1_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_ybr166c_1_result,trial_on_rich_growthrate_ybr166c_1_result_2).
has_representation(trial_on_rich_growthrate_ybr166c_1_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_ybr166c_1_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_ybr166c_1_result_2,trial_on_rich_growthrate_ybr166c_1_result_2_proc).
procedure(trial_on_rich_growthrate_ybr166c_1_result_2_proc).
has_representation(trial_on_rich_growthrate_ybr166c_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ybr166c_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_ybr166c_2,trial_on_rich_growthrate_ybr166c_2_design).
design(trial_on_rich_growthrate_ybr166c_2_design).
has_proposition(trial_on_rich_growthrate_ybr166c_2_design,trial_on_rich_growthrate_ybr166c_2_factor).
factor(trial_on_rich_growthrate_ybr166c_2_factor).
has_representation(trial_on_rich_growthrate_ybr166c_2_factor,'presence or absence of ybr166c').
has_input(trial_on_rich_growthrate_ybr166c_2,trial_on_rich_growthrate_ybr166c_2_data).
data(trial_on_rich_growthrate_ybr166c_2_data).
has_part(trial_on_rich_growthrate_ybr166c_2_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_ybr166c_2_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_ybr166c_2_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_ybr166c_2,'nature-loop3_expt002-plate001').
plate('nature-loop3_expt002-plate001').
has_proposition(trial_on_rich_growthrate_ybr166c_2,trial_on_rich_growthrate_ybr166c_2_result).
result(trial_on_rich_growthrate_ybr166c_2_result).
has_part(trial_on_rich_growthrate_ybr166c_2_result,trial_on_rich_growthrate_ybr166c_2_result_1).
has_representation(trial_on_rich_growthrate_ybr166c_2_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_ybr166c_2_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_ybr166c_2_result_1,trial_on_rich_growthrate_ybr166c_2_result_1_proc).
procedure(trial_on_rich_growthrate_ybr166c_2_result_1_proc).
has_representation(trial_on_rich_growthrate_ybr166c_2_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ybr166c_2_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_ybr166c_2_result,trial_on_rich_growthrate_ybr166c_2_result_2).
has_representation(trial_on_rich_growthrate_ybr166c_2_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_ybr166c_2_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_ybr166c_2_result_2,trial_on_rich_growthrate_ybr166c_2_result_2_proc).
procedure(trial_on_rich_growthrate_ybr166c_2_result_2_proc).
has_representation(trial_on_rich_growthrate_ybr166c_2_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ybr166c_2_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_ybr166c_3,trial_on_rich_growthrate_ybr166c_3_design).
design(trial_on_rich_growthrate_ybr166c_3_design).
has_proposition(trial_on_rich_growthrate_ybr166c_3_design,trial_on_rich_growthrate_ybr166c_3_factor).
factor(trial_on_rich_growthrate_ybr166c_3_factor).
has_representation(trial_on_rich_growthrate_ybr166c_3_factor,'presence or absence of ybr166c').
has_input(trial_on_rich_growthrate_ybr166c_3,trial_on_rich_growthrate_ybr166c_3_data).
data(trial_on_rich_growthrate_ybr166c_3_data).
has_part(trial_on_rich_growthrate_ybr166c_3_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_ybr166c_3_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_ybr166c_3_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_ybr166c_3,'nature-loop3_expt003-plate008').
plate('nature-loop3_expt003-plate008').
has_proposition(trial_on_rich_growthrate_ybr166c_3,trial_on_rich_growthrate_ybr166c_3_result).
result(trial_on_rich_growthrate_ybr166c_3_result).
has_part(trial_on_rich_growthrate_ybr166c_3_result,trial_on_rich_growthrate_ybr166c_3_result_1).
has_representation(trial_on_rich_growthrate_ybr166c_3_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_ybr166c_3_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_ybr166c_3_result_1,trial_on_rich_growthrate_ybr166c_3_result_1_proc).
procedure(trial_on_rich_growthrate_ybr166c_3_result_1_proc).
has_representation(trial_on_rich_growthrate_ybr166c_3_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ybr166c_3_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_ybr166c_3_result,trial_on_rich_growthrate_ybr166c_3_result_2).
has_representation(trial_on_rich_growthrate_ybr166c_3_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_ybr166c_3_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_ybr166c_3_result_2,trial_on_rich_growthrate_ybr166c_3_result_2_proc).
procedure(trial_on_rich_growthrate_ybr166c_3_result_2_proc).
has_representation(trial_on_rich_growthrate_ybr166c_3_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ybr166c_3_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_ybr166c_4,trial_on_rich_growthrate_ybr166c_4_design).
design(trial_on_rich_growthrate_ybr166c_4_design).
has_proposition(trial_on_rich_growthrate_ybr166c_4_design,trial_on_rich_growthrate_ybr166c_4_factor).
factor(trial_on_rich_growthrate_ybr166c_4_factor).
has_representation(trial_on_rich_growthrate_ybr166c_4_factor,'presence or absence of ybr166c').
has_input(trial_on_rich_growthrate_ybr166c_4,trial_on_rich_growthrate_ybr166c_4_data).
data(trial_on_rich_growthrate_ybr166c_4_data).
has_part(trial_on_rich_growthrate_ybr166c_4_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_ybr166c_4_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_ybr166c_4_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_ybr166c_4,'nature-loop3_expt004-plate001').
plate('nature-loop3_expt004-plate001').
has_proposition(trial_on_rich_growthrate_ybr166c_4,trial_on_rich_growthrate_ybr166c_4_result).
result(trial_on_rich_growthrate_ybr166c_4_result).
has_part(trial_on_rich_growthrate_ybr166c_4_result,trial_on_rich_growthrate_ybr166c_4_result_1).
has_representation(trial_on_rich_growthrate_ybr166c_4_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_ybr166c_4_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_ybr166c_4_result_1,trial_on_rich_growthrate_ybr166c_4_result_1_proc).
procedure(trial_on_rich_growthrate_ybr166c_4_result_1_proc).
has_representation(trial_on_rich_growthrate_ybr166c_4_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ybr166c_4_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_ybr166c_4_result,trial_on_rich_growthrate_ybr166c_4_result_2).
has_representation(trial_on_rich_growthrate_ybr166c_4_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_ybr166c_4_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_ybr166c_4_result_2,trial_on_rich_growthrate_ybr166c_4_result_2_proc).
procedure(trial_on_rich_growthrate_ybr166c_4_result_2_proc).
has_representation(trial_on_rich_growthrate_ybr166c_4_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ybr166c_4_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_ybr166c_5,trial_on_rich_growthrate_ybr166c_5_design).
design(trial_on_rich_growthrate_ybr166c_5_design).
has_proposition(trial_on_rich_growthrate_ybr166c_5_design,trial_on_rich_growthrate_ybr166c_5_factor).
factor(trial_on_rich_growthrate_ybr166c_5_factor).
has_representation(trial_on_rich_growthrate_ybr166c_5_factor,'presence or absence of ybr166c').
has_input(trial_on_rich_growthrate_ybr166c_5,trial_on_rich_growthrate_ybr166c_5_data).
data(trial_on_rich_growthrate_ybr166c_5_data).
has_part(trial_on_rich_growthrate_ybr166c_5_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_ybr166c_5_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_ybr166c_5_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_ybr166c_5,'nature-loop3_expt005-plate001').
plate('nature-loop3_expt005-plate001').
has_proposition(trial_on_rich_growthrate_ybr166c_5,trial_on_rich_growthrate_ybr166c_5_result).
result(trial_on_rich_growthrate_ybr166c_5_result).
has_part(trial_on_rich_growthrate_ybr166c_5_result,trial_on_rich_growthrate_ybr166c_5_result_1).
has_representation(trial_on_rich_growthrate_ybr166c_5_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_ybr166c_5_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_ybr166c_5_result_1,trial_on_rich_growthrate_ybr166c_5_result_1_proc).
procedure(trial_on_rich_growthrate_ybr166c_5_result_1_proc).
has_representation(trial_on_rich_growthrate_ybr166c_5_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ybr166c_5_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_ybr166c_5_result,trial_on_rich_growthrate_ybr166c_5_result_2).
has_representation(trial_on_rich_growthrate_ybr166c_5_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_ybr166c_5_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_ybr166c_5_result_2,trial_on_rich_growthrate_ybr166c_5_result_2_proc).
procedure(trial_on_rich_growthrate_ybr166c_5_result_2_proc).
has_representation(trial_on_rich_growthrate_ybr166c_5_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ybr166c_5_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_ybr166c_6,trial_on_rich_growthrate_ybr166c_6_design).
design(trial_on_rich_growthrate_ybr166c_6_design).
has_proposition(trial_on_rich_growthrate_ybr166c_6_design,trial_on_rich_growthrate_ybr166c_6_factor).
factor(trial_on_rich_growthrate_ybr166c_6_factor).
has_representation(trial_on_rich_growthrate_ybr166c_6_factor,'presence or absence of ybr166c').
has_input(trial_on_rich_growthrate_ybr166c_6,trial_on_rich_growthrate_ybr166c_6_data).
data(trial_on_rich_growthrate_ybr166c_6_data).
has_part(trial_on_rich_growthrate_ybr166c_6_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_ybr166c_6_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_ybr166c_6_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_ybr166c_6,'nature-loop1_expt001-plate008').
plate('nature-loop1_expt001-plate008').
has_proposition(trial_on_rich_growthrate_ybr166c_6,trial_on_rich_growthrate_ybr166c_6_result).
result(trial_on_rich_growthrate_ybr166c_6_result).
has_part(trial_on_rich_growthrate_ybr166c_6_result,trial_on_rich_growthrate_ybr166c_6_result_1).
has_representation(trial_on_rich_growthrate_ybr166c_6_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_ybr166c_6_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_ybr166c_6_result_1,trial_on_rich_growthrate_ybr166c_6_result_1_proc).
procedure(trial_on_rich_growthrate_ybr166c_6_result_1_proc).
has_representation(trial_on_rich_growthrate_ybr166c_6_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ybr166c_6_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_ybr166c_6_result,trial_on_rich_growthrate_ybr166c_6_result_2).
has_representation(trial_on_rich_growthrate_ybr166c_6_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_ybr166c_6_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_ybr166c_6_result_2,trial_on_rich_growthrate_ybr166c_6_result_2_proc).
procedure(trial_on_rich_growthrate_ybr166c_6_result_2_proc).
has_representation(trial_on_rich_growthrate_ybr166c_6_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ybr166c_6_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_ybr166c_7,trial_on_rich_growthrate_ybr166c_7_design).
design(trial_on_rich_growthrate_ybr166c_7_design).
has_proposition(trial_on_rich_growthrate_ybr166c_7_design,trial_on_rich_growthrate_ybr166c_7_factor).
factor(trial_on_rich_growthrate_ybr166c_7_factor).
has_representation(trial_on_rich_growthrate_ybr166c_7_factor,'presence or absence of ybr166c').
has_input(trial_on_rich_growthrate_ybr166c_7,trial_on_rich_growthrate_ybr166c_7_data).
data(trial_on_rich_growthrate_ybr166c_7_data).
has_part(trial_on_rich_growthrate_ybr166c_7_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_ybr166c_7_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_ybr166c_7_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_ybr166c_7,'nature-loop2_expt001-plate001').
plate('nature-loop2_expt001-plate001').
has_proposition(trial_on_rich_growthrate_ybr166c_7,trial_on_rich_growthrate_ybr166c_7_result).
result(trial_on_rich_growthrate_ybr166c_7_result).
has_part(trial_on_rich_growthrate_ybr166c_7_result,trial_on_rich_growthrate_ybr166c_7_result_1).
has_representation(trial_on_rich_growthrate_ybr166c_7_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_ybr166c_7_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_ybr166c_7_result_1,trial_on_rich_growthrate_ybr166c_7_result_1_proc).
procedure(trial_on_rich_growthrate_ybr166c_7_result_1_proc).
has_representation(trial_on_rich_growthrate_ybr166c_7_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ybr166c_7_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_ybr166c_7_result,trial_on_rich_growthrate_ybr166c_7_result_2).
has_representation(trial_on_rich_growthrate_ybr166c_7_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_ybr166c_7_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_ybr166c_7_result_2,trial_on_rich_growthrate_ybr166c_7_result_2_proc).
procedure(trial_on_rich_growthrate_ybr166c_7_result_2_proc).
has_representation(trial_on_rich_growthrate_ybr166c_7_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ybr166c_7_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_ybr166c,trial_on_rich_growthrate_ybr166c_results).
result(trial_on_rich_growthrate_ybr166c_results).
has_part(trial_on_rich_growthrate_ybr166c_results,trial_on_rich_growthrate_ybr166c_results_1).
has_representation(trial_on_rich_growthrate_ybr166c_results_1,'median of knockout medians missing ybr166c').
text_representation('median of knockout medians missing ybr166c').
has_proposition(trial_on_rich_growthrate_ybr166c_results_1,trial_on_rich_growthrate_ybr166c_results_1_proc).
procedure(trial_on_rich_growthrate_ybr166c_results_1_proc).
has_proposition(trial_on_rich_growthrate_ybr166c_results_1_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_rich_growthrate_ybr166c_results,trial_on_rich_growthrate_ybr166c_results_2).
has_representation(trial_on_rich_growthrate_ybr166c_results_2,'median of wild type medians').
text_representation('median of wild type medians').
has_proposition(trial_on_rich_growthrate_ybr166c_results_2,trial_on_rich_growthrate_ybr166c_results_2_proc).
procedure(trial_on_rich_growthrate_ybr166c_results_2_proc).
has_proposition(trial_on_rich_growthrate_ybr166c_results_2_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_rich_growthrate_ybr166c_results,trial_on_rich_growthrate_ybr166c_results_3).
has_representation(trial_on_rich_growthrate_ybr166c_results_3,'difference between trial_on_rich_growthrate_ybr166c_results_1 and trial_on_rich_growthrate_ybr166c_results_2').
text_representation('difference between trial_on_rich_growthrate_ybr166c_results_1 and trial_on_rich_growthrate_ybr166c_results_2').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_result).
result(study_on_rich_growthrate_result).
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_1).
has_representation(study_on_rich_growthrate_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_rich_growthrate_result_1,'results/wr_kr_growth_rate.csv').
link('results/wr_kr_growth_rate.csv').
has_proposition(study_on_rich_growthrate_result_1,study_on_rich_growthrate_result_1_proc).
procedure(study_on_rich_growthrate_result_1_proc).
has_proposition(study_on_rich_growthrate_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_2).
has_representation(study_on_rich_growthrate_result_2,'bar graph (histogram) plotting study_on_rich_growthrate_result_1').
text_representation('bar graph (histogram) plotting study_on_rich_growthrate_result_1').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate1.tiff').
link('results/kr_wr_growth_rate1.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate2.tiff').
link('results/kr_wr_growth_rate2.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/overlayed_growth_rate.tiff').
link('results/overlayed_growth_rate.tiff').
has_proposition(study_on_rich_growthrate_result_2,study_on_rich_growthrate_result_2_proc).
procedure(study_on_rich_growthrate_result_2_proc).
has_proposition(study_on_rich_growthrate_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_conclusion).
conclusion(study_on_rich_growthrate_conclusion).
has_representation(study_on_rich_growthrate_conclusion,'The knockouts have higher growth rate in rich than the wild type').
text_representation('The knockouts have higher growth rate in rich than the wild type').
has_proposition(study_on_rich_growthrate_conclusion,'obtain statistical mode of study_on_rich_growthrate_result_1').
procedure('obtain statistical mode of study_on_rich_growthrate_result_1').
text_representation('obtain statistical mode of study_on_rich_growthrate_result_1').
has_part(study_on_rich_growthrate,trial_on_rich_growthrate_ydl168w).
trial(trial_on_rich_growthrate_ydl168w).
has_agent(trial_on_rich_growthrate_ydl168w,ydl168w).
strain(ydl168w).
has_proposition(trial_on_rich_growthrate_ydl168w_1,trial_on_rich_growthrate_ydl168w_1_design).
design(trial_on_rich_growthrate_ydl168w_1_design).
has_proposition(trial_on_rich_growthrate_ydl168w_1_design,trial_on_rich_growthrate_ydl168w_1_factor).
factor(trial_on_rich_growthrate_ydl168w_1_factor).
has_representation(trial_on_rich_growthrate_ydl168w_1_factor,'presence or absence of ydl168w').
has_input(trial_on_rich_growthrate_ydl168w_1,trial_on_rich_growthrate_ydl168w_1_data).
data(trial_on_rich_growthrate_ydl168w_1_data).
has_part(trial_on_rich_growthrate_ydl168w_1_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_ydl168w_1_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_ydl168w_1_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_ydl168w_1,'feb07-single1_expt001-plate001').
plate('feb07-single1_expt001-plate001').
has_proposition(trial_on_rich_growthrate_ydl168w_1,trial_on_rich_growthrate_ydl168w_1_result).
result(trial_on_rich_growthrate_ydl168w_1_result).
has_part(trial_on_rich_growthrate_ydl168w_1_result,trial_on_rich_growthrate_ydl168w_1_result_1).
has_representation(trial_on_rich_growthrate_ydl168w_1_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_ydl168w_1_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_ydl168w_1_result_1,trial_on_rich_growthrate_ydl168w_1_result_1_proc).
procedure(trial_on_rich_growthrate_ydl168w_1_result_1_proc).
has_representation(trial_on_rich_growthrate_ydl168w_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ydl168w_1_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_ydl168w_1_result,trial_on_rich_growthrate_ydl168w_1_result_2).
has_representation(trial_on_rich_growthrate_ydl168w_1_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_ydl168w_1_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_ydl168w_1_result_2,trial_on_rich_growthrate_ydl168w_1_result_2_proc).
procedure(trial_on_rich_growthrate_ydl168w_1_result_2_proc).
has_representation(trial_on_rich_growthrate_ydl168w_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ydl168w_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_ydl168w_2,trial_on_rich_growthrate_ydl168w_2_design).
design(trial_on_rich_growthrate_ydl168w_2_design).
has_proposition(trial_on_rich_growthrate_ydl168w_2_design,trial_on_rich_growthrate_ydl168w_2_factor).
factor(trial_on_rich_growthrate_ydl168w_2_factor).
has_representation(trial_on_rich_growthrate_ydl168w_2_factor,'presence or absence of ydl168w').
has_input(trial_on_rich_growthrate_ydl168w_2,trial_on_rich_growthrate_ydl168w_2_data).
data(trial_on_rich_growthrate_ydl168w_2_data).
has_part(trial_on_rich_growthrate_ydl168w_2_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_ydl168w_2_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_ydl168w_2_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_ydl168w_2,'jan07-single3_expt001-plate001').
plate('jan07-single3_expt001-plate001').
has_proposition(trial_on_rich_growthrate_ydl168w_2,trial_on_rich_growthrate_ydl168w_2_result).
result(trial_on_rich_growthrate_ydl168w_2_result).
has_part(trial_on_rich_growthrate_ydl168w_2_result,trial_on_rich_growthrate_ydl168w_2_result_1).
has_representation(trial_on_rich_growthrate_ydl168w_2_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_ydl168w_2_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_ydl168w_2_result_1,trial_on_rich_growthrate_ydl168w_2_result_1_proc).
procedure(trial_on_rich_growthrate_ydl168w_2_result_1_proc).
has_representation(trial_on_rich_growthrate_ydl168w_2_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ydl168w_2_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_ydl168w_2_result,trial_on_rich_growthrate_ydl168w_2_result_2).
has_representation(trial_on_rich_growthrate_ydl168w_2_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_ydl168w_2_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_ydl168w_2_result_2,trial_on_rich_growthrate_ydl168w_2_result_2_proc).
procedure(trial_on_rich_growthrate_ydl168w_2_result_2_proc).
has_representation(trial_on_rich_growthrate_ydl168w_2_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ydl168w_2_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_ydl168w_3,trial_on_rich_growthrate_ydl168w_3_design).
design(trial_on_rich_growthrate_ydl168w_3_design).
has_proposition(trial_on_rich_growthrate_ydl168w_3_design,trial_on_rich_growthrate_ydl168w_3_factor).
factor(trial_on_rich_growthrate_ydl168w_3_factor).
has_representation(trial_on_rich_growthrate_ydl168w_3_factor,'presence or absence of ydl168w').
has_input(trial_on_rich_growthrate_ydl168w_3,trial_on_rich_growthrate_ydl168w_3_data).
data(trial_on_rich_growthrate_ydl168w_3_data).
has_part(trial_on_rich_growthrate_ydl168w_3_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_ydl168w_3_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_ydl168w_3_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_ydl168w_3,'jan07-trial1_expt001-plate001').
plate('jan07-trial1_expt001-plate001').
has_proposition(trial_on_rich_growthrate_ydl168w_3,trial_on_rich_growthrate_ydl168w_3_result).
result(trial_on_rich_growthrate_ydl168w_3_result).
has_part(trial_on_rich_growthrate_ydl168w_3_result,trial_on_rich_growthrate_ydl168w_3_result_1).
has_representation(trial_on_rich_growthrate_ydl168w_3_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_ydl168w_3_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_ydl168w_3_result_1,trial_on_rich_growthrate_ydl168w_3_result_1_proc).
procedure(trial_on_rich_growthrate_ydl168w_3_result_1_proc).
has_representation(trial_on_rich_growthrate_ydl168w_3_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ydl168w_3_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_ydl168w_3_result,trial_on_rich_growthrate_ydl168w_3_result_2).
has_representation(trial_on_rich_growthrate_ydl168w_3_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_ydl168w_3_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_ydl168w_3_result_2,trial_on_rich_growthrate_ydl168w_3_result_2_proc).
procedure(trial_on_rich_growthrate_ydl168w_3_result_2_proc).
has_representation(trial_on_rich_growthrate_ydl168w_3_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ydl168w_3_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_ydl168w_4,trial_on_rich_growthrate_ydl168w_4_design).
design(trial_on_rich_growthrate_ydl168w_4_design).
has_proposition(trial_on_rich_growthrate_ydl168w_4_design,trial_on_rich_growthrate_ydl168w_4_factor).
factor(trial_on_rich_growthrate_ydl168w_4_factor).
has_representation(trial_on_rich_growthrate_ydl168w_4_factor,'presence or absence of ydl168w').
has_input(trial_on_rich_growthrate_ydl168w_4,trial_on_rich_growthrate_ydl168w_4_data).
data(trial_on_rich_growthrate_ydl168w_4_data).
has_part(trial_on_rich_growthrate_ydl168w_4_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_ydl168w_4_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_ydl168w_4_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_ydl168w_4,'jan07-trial1_expt001-plate008').
plate('jan07-trial1_expt001-plate008').
has_proposition(trial_on_rich_growthrate_ydl168w_4,trial_on_rich_growthrate_ydl168w_4_result).
result(trial_on_rich_growthrate_ydl168w_4_result).
has_part(trial_on_rich_growthrate_ydl168w_4_result,trial_on_rich_growthrate_ydl168w_4_result_1).
has_representation(trial_on_rich_growthrate_ydl168w_4_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_ydl168w_4_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_ydl168w_4_result_1,trial_on_rich_growthrate_ydl168w_4_result_1_proc).
procedure(trial_on_rich_growthrate_ydl168w_4_result_1_proc).
has_representation(trial_on_rich_growthrate_ydl168w_4_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ydl168w_4_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_ydl168w_4_result,trial_on_rich_growthrate_ydl168w_4_result_2).
has_representation(trial_on_rich_growthrate_ydl168w_4_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_ydl168w_4_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_ydl168w_4_result_2,trial_on_rich_growthrate_ydl168w_4_result_2_proc).
procedure(trial_on_rich_growthrate_ydl168w_4_result_2_proc).
has_representation(trial_on_rich_growthrate_ydl168w_4_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ydl168w_4_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_ydl168w_5,trial_on_rich_growthrate_ydl168w_5_design).
design(trial_on_rich_growthrate_ydl168w_5_design).
has_proposition(trial_on_rich_growthrate_ydl168w_5_design,trial_on_rich_growthrate_ydl168w_5_factor).
factor(trial_on_rich_growthrate_ydl168w_5_factor).
has_representation(trial_on_rich_growthrate_ydl168w_5_factor,'presence or absence of ydl168w').
has_input(trial_on_rich_growthrate_ydl168w_5,trial_on_rich_growthrate_ydl168w_5_data).
data(trial_on_rich_growthrate_ydl168w_5_data).
has_part(trial_on_rich_growthrate_ydl168w_5_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_ydl168w_5_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_ydl168w_5_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_ydl168w_5,'jan07-trial2_expt001-plate003').
plate('jan07-trial2_expt001-plate003').
has_proposition(trial_on_rich_growthrate_ydl168w_5,trial_on_rich_growthrate_ydl168w_5_result).
result(trial_on_rich_growthrate_ydl168w_5_result).
has_part(trial_on_rich_growthrate_ydl168w_5_result,trial_on_rich_growthrate_ydl168w_5_result_1).
has_representation(trial_on_rich_growthrate_ydl168w_5_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_ydl168w_5_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_ydl168w_5_result_1,trial_on_rich_growthrate_ydl168w_5_result_1_proc).
procedure(trial_on_rich_growthrate_ydl168w_5_result_1_proc).
has_representation(trial_on_rich_growthrate_ydl168w_5_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ydl168w_5_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_ydl168w_5_result,trial_on_rich_growthrate_ydl168w_5_result_2).
has_representation(trial_on_rich_growthrate_ydl168w_5_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_ydl168w_5_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_ydl168w_5_result_2,trial_on_rich_growthrate_ydl168w_5_result_2_proc).
procedure(trial_on_rich_growthrate_ydl168w_5_result_2_proc).
has_representation(trial_on_rich_growthrate_ydl168w_5_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ydl168w_5_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_ydl168w_6,trial_on_rich_growthrate_ydl168w_6_design).
design(trial_on_rich_growthrate_ydl168w_6_design).
has_proposition(trial_on_rich_growthrate_ydl168w_6_design,trial_on_rich_growthrate_ydl168w_6_factor).
factor(trial_on_rich_growthrate_ydl168w_6_factor).
has_representation(trial_on_rich_growthrate_ydl168w_6_factor,'presence or absence of ydl168w').
has_input(trial_on_rich_growthrate_ydl168w_6,trial_on_rich_growthrate_ydl168w_6_data).
data(trial_on_rich_growthrate_ydl168w_6_data).
has_part(trial_on_rich_growthrate_ydl168w_6_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_ydl168w_6_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_ydl168w_6_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_ydl168w_6,'jan07-trial2_expt001-plate005').
plate('jan07-trial2_expt001-plate005').
has_proposition(trial_on_rich_growthrate_ydl168w_6,trial_on_rich_growthrate_ydl168w_6_result).
result(trial_on_rich_growthrate_ydl168w_6_result).
has_part(trial_on_rich_growthrate_ydl168w_6_result,trial_on_rich_growthrate_ydl168w_6_result_1).
has_representation(trial_on_rich_growthrate_ydl168w_6_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_ydl168w_6_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_ydl168w_6_result_1,trial_on_rich_growthrate_ydl168w_6_result_1_proc).
procedure(trial_on_rich_growthrate_ydl168w_6_result_1_proc).
has_representation(trial_on_rich_growthrate_ydl168w_6_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ydl168w_6_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_ydl168w_6_result,trial_on_rich_growthrate_ydl168w_6_result_2).
has_representation(trial_on_rich_growthrate_ydl168w_6_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_ydl168w_6_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_ydl168w_6_result_2,trial_on_rich_growthrate_ydl168w_6_result_2_proc).
procedure(trial_on_rich_growthrate_ydl168w_6_result_2_proc).
has_representation(trial_on_rich_growthrate_ydl168w_6_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ydl168w_6_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_ydl168w,trial_on_rich_growthrate_ydl168w_results).
result(trial_on_rich_growthrate_ydl168w_results).
has_part(trial_on_rich_growthrate_ydl168w_results,trial_on_rich_growthrate_ydl168w_results_1).
has_representation(trial_on_rich_growthrate_ydl168w_results_1,'median of knockout medians missing ydl168w').
text_representation('median of knockout medians missing ydl168w').
has_proposition(trial_on_rich_growthrate_ydl168w_results_1,trial_on_rich_growthrate_ydl168w_results_1_proc).
procedure(trial_on_rich_growthrate_ydl168w_results_1_proc).
has_proposition(trial_on_rich_growthrate_ydl168w_results_1_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_rich_growthrate_ydl168w_results,trial_on_rich_growthrate_ydl168w_results_2).
has_representation(trial_on_rich_growthrate_ydl168w_results_2,'median of wild type medians').
text_representation('median of wild type medians').
has_proposition(trial_on_rich_growthrate_ydl168w_results_2,trial_on_rich_growthrate_ydl168w_results_2_proc).
procedure(trial_on_rich_growthrate_ydl168w_results_2_proc).
has_proposition(trial_on_rich_growthrate_ydl168w_results_2_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_rich_growthrate_ydl168w_results,trial_on_rich_growthrate_ydl168w_results_3).
has_representation(trial_on_rich_growthrate_ydl168w_results_3,'difference between trial_on_rich_growthrate_ydl168w_results_1 and trial_on_rich_growthrate_ydl168w_results_2').
text_representation('difference between trial_on_rich_growthrate_ydl168w_results_1 and trial_on_rich_growthrate_ydl168w_results_2').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_result).
result(study_on_rich_growthrate_result).
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_1).
has_representation(study_on_rich_growthrate_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_rich_growthrate_result_1,'results/wr_kr_growth_rate.csv').
link('results/wr_kr_growth_rate.csv').
has_proposition(study_on_rich_growthrate_result_1,study_on_rich_growthrate_result_1_proc).
procedure(study_on_rich_growthrate_result_1_proc).
has_proposition(study_on_rich_growthrate_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_2).
has_representation(study_on_rich_growthrate_result_2,'bar graph (histogram) plotting study_on_rich_growthrate_result_1').
text_representation('bar graph (histogram) plotting study_on_rich_growthrate_result_1').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate1.tiff').
link('results/kr_wr_growth_rate1.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate2.tiff').
link('results/kr_wr_growth_rate2.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/overlayed_growth_rate.tiff').
link('results/overlayed_growth_rate.tiff').
has_proposition(study_on_rich_growthrate_result_2,study_on_rich_growthrate_result_2_proc).
procedure(study_on_rich_growthrate_result_2_proc).
has_proposition(study_on_rich_growthrate_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_conclusion).
conclusion(study_on_rich_growthrate_conclusion).
has_representation(study_on_rich_growthrate_conclusion,'The knockouts have higher growth rate in rich than the wild type').
text_representation('The knockouts have higher growth rate in rich than the wild type').
has_proposition(study_on_rich_growthrate_conclusion,'obtain statistical mode of study_on_rich_growthrate_result_1').
procedure('obtain statistical mode of study_on_rich_growthrate_result_1').
text_representation('obtain statistical mode of study_on_rich_growthrate_result_1').
has_part(study_on_rich_growthrate,trial_on_rich_growthrate_ylr209c).
trial(trial_on_rich_growthrate_ylr209c).
has_agent(trial_on_rich_growthrate_ylr209c,ylr209c).
strain(ylr209c).
has_proposition(trial_on_rich_growthrate_ylr209c_1,trial_on_rich_growthrate_ylr209c_1_design).
design(trial_on_rich_growthrate_ylr209c_1_design).
has_proposition(trial_on_rich_growthrate_ylr209c_1_design,trial_on_rich_growthrate_ylr209c_1_factor).
factor(trial_on_rich_growthrate_ylr209c_1_factor).
has_representation(trial_on_rich_growthrate_ylr209c_1_factor,'presence or absence of ylr209c').
has_input(trial_on_rich_growthrate_ylr209c_1,trial_on_rich_growthrate_ylr209c_1_data).
data(trial_on_rich_growthrate_ylr209c_1_data).
has_part(trial_on_rich_growthrate_ylr209c_1_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_ylr209c_1_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_ylr209c_1_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_ylr209c_1,'mar07-trial3_expt001-plate003').
plate('mar07-trial3_expt001-plate003').
has_proposition(trial_on_rich_growthrate_ylr209c_1,trial_on_rich_growthrate_ylr209c_1_result).
result(trial_on_rich_growthrate_ylr209c_1_result).
has_part(trial_on_rich_growthrate_ylr209c_1_result,trial_on_rich_growthrate_ylr209c_1_result_1).
has_representation(trial_on_rich_growthrate_ylr209c_1_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_ylr209c_1_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_ylr209c_1_result_1,trial_on_rich_growthrate_ylr209c_1_result_1_proc).
procedure(trial_on_rich_growthrate_ylr209c_1_result_1_proc).
has_representation(trial_on_rich_growthrate_ylr209c_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ylr209c_1_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_ylr209c_1_result,trial_on_rich_growthrate_ylr209c_1_result_2).
has_representation(trial_on_rich_growthrate_ylr209c_1_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_ylr209c_1_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_ylr209c_1_result_2,trial_on_rich_growthrate_ylr209c_1_result_2_proc).
procedure(trial_on_rich_growthrate_ylr209c_1_result_2_proc).
has_representation(trial_on_rich_growthrate_ylr209c_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ylr209c_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_ylr209c_2,trial_on_rich_growthrate_ylr209c_2_design).
design(trial_on_rich_growthrate_ylr209c_2_design).
has_proposition(trial_on_rich_growthrate_ylr209c_2_design,trial_on_rich_growthrate_ylr209c_2_factor).
factor(trial_on_rich_growthrate_ylr209c_2_factor).
has_representation(trial_on_rich_growthrate_ylr209c_2_factor,'presence or absence of ylr209c').
has_input(trial_on_rich_growthrate_ylr209c_2,trial_on_rich_growthrate_ylr209c_2_data).
data(trial_on_rich_growthrate_ylr209c_2_data).
has_part(trial_on_rich_growthrate_ylr209c_2_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_ylr209c_2_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_ylr209c_2_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_ylr209c_2,'mar07-trial3_expt001-plate004').
plate('mar07-trial3_expt001-plate004').
has_proposition(trial_on_rich_growthrate_ylr209c_2,trial_on_rich_growthrate_ylr209c_2_result).
result(trial_on_rich_growthrate_ylr209c_2_result).
has_part(trial_on_rich_growthrate_ylr209c_2_result,trial_on_rich_growthrate_ylr209c_2_result_1).
has_representation(trial_on_rich_growthrate_ylr209c_2_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_ylr209c_2_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_ylr209c_2_result_1,trial_on_rich_growthrate_ylr209c_2_result_1_proc).
procedure(trial_on_rich_growthrate_ylr209c_2_result_1_proc).
has_representation(trial_on_rich_growthrate_ylr209c_2_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ylr209c_2_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_ylr209c_2_result,trial_on_rich_growthrate_ylr209c_2_result_2).
has_representation(trial_on_rich_growthrate_ylr209c_2_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_ylr209c_2_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_ylr209c_2_result_2,trial_on_rich_growthrate_ylr209c_2_result_2_proc).
procedure(trial_on_rich_growthrate_ylr209c_2_result_2_proc).
has_representation(trial_on_rich_growthrate_ylr209c_2_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ylr209c_2_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_ylr209c_3,trial_on_rich_growthrate_ylr209c_3_design).
design(trial_on_rich_growthrate_ylr209c_3_design).
has_proposition(trial_on_rich_growthrate_ylr209c_3_design,trial_on_rich_growthrate_ylr209c_3_factor).
factor(trial_on_rich_growthrate_ylr209c_3_factor).
has_representation(trial_on_rich_growthrate_ylr209c_3_factor,'presence or absence of ylr209c').
has_input(trial_on_rich_growthrate_ylr209c_3,trial_on_rich_growthrate_ylr209c_3_data).
data(trial_on_rich_growthrate_ylr209c_3_data).
has_part(trial_on_rich_growthrate_ylr209c_3_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_ylr209c_3_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_ylr209c_3_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_ylr209c_3,'mar07-trial4_expt1-plate004').
plate('mar07-trial4_expt1-plate004').
has_proposition(trial_on_rich_growthrate_ylr209c_3,trial_on_rich_growthrate_ylr209c_3_result).
result(trial_on_rich_growthrate_ylr209c_3_result).
has_part(trial_on_rich_growthrate_ylr209c_3_result,trial_on_rich_growthrate_ylr209c_3_result_1).
has_representation(trial_on_rich_growthrate_ylr209c_3_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_ylr209c_3_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_ylr209c_3_result_1,trial_on_rich_growthrate_ylr209c_3_result_1_proc).
procedure(trial_on_rich_growthrate_ylr209c_3_result_1_proc).
has_representation(trial_on_rich_growthrate_ylr209c_3_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ylr209c_3_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_ylr209c_3_result,trial_on_rich_growthrate_ylr209c_3_result_2).
has_representation(trial_on_rich_growthrate_ylr209c_3_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_ylr209c_3_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_ylr209c_3_result_2,trial_on_rich_growthrate_ylr209c_3_result_2_proc).
procedure(trial_on_rich_growthrate_ylr209c_3_result_2_proc).
has_representation(trial_on_rich_growthrate_ylr209c_3_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ylr209c_3_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_ylr209c_4,trial_on_rich_growthrate_ylr209c_4_design).
design(trial_on_rich_growthrate_ylr209c_4_design).
has_proposition(trial_on_rich_growthrate_ylr209c_4_design,trial_on_rich_growthrate_ylr209c_4_factor).
factor(trial_on_rich_growthrate_ylr209c_4_factor).
has_representation(trial_on_rich_growthrate_ylr209c_4_factor,'presence or absence of ylr209c').
has_input(trial_on_rich_growthrate_ylr209c_4,trial_on_rich_growthrate_ylr209c_4_data).
data(trial_on_rich_growthrate_ylr209c_4_data).
has_part(trial_on_rich_growthrate_ylr209c_4_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_ylr209c_4_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_ylr209c_4_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_ylr209c_4,'mar07-trial4_expt1-plate005').
plate('mar07-trial4_expt1-plate005').
has_proposition(trial_on_rich_growthrate_ylr209c_4,trial_on_rich_growthrate_ylr209c_4_result).
result(trial_on_rich_growthrate_ylr209c_4_result).
has_part(trial_on_rich_growthrate_ylr209c_4_result,trial_on_rich_growthrate_ylr209c_4_result_1).
has_representation(trial_on_rich_growthrate_ylr209c_4_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_ylr209c_4_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_ylr209c_4_result_1,trial_on_rich_growthrate_ylr209c_4_result_1_proc).
procedure(trial_on_rich_growthrate_ylr209c_4_result_1_proc).
has_representation(trial_on_rich_growthrate_ylr209c_4_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ylr209c_4_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_ylr209c_4_result,trial_on_rich_growthrate_ylr209c_4_result_2).
has_representation(trial_on_rich_growthrate_ylr209c_4_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_ylr209c_4_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_ylr209c_4_result_2,trial_on_rich_growthrate_ylr209c_4_result_2_proc).
procedure(trial_on_rich_growthrate_ylr209c_4_result_2_proc).
has_representation(trial_on_rich_growthrate_ylr209c_4_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ylr209c_4_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_ylr209c_5,trial_on_rich_growthrate_ylr209c_5_design).
design(trial_on_rich_growthrate_ylr209c_5_design).
has_proposition(trial_on_rich_growthrate_ylr209c_5_design,trial_on_rich_growthrate_ylr209c_5_factor).
factor(trial_on_rich_growthrate_ylr209c_5_factor).
has_representation(trial_on_rich_growthrate_ylr209c_5_factor,'presence or absence of ylr209c').
has_input(trial_on_rich_growthrate_ylr209c_5,trial_on_rich_growthrate_ylr209c_5_data).
data(trial_on_rich_growthrate_ylr209c_5_data).
has_part(trial_on_rich_growthrate_ylr209c_5_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_ylr209c_5_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_ylr209c_5_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_ylr209c_5,'mar07-trial4_expt1-plate006').
plate('mar07-trial4_expt1-plate006').
has_proposition(trial_on_rich_growthrate_ylr209c_5,trial_on_rich_growthrate_ylr209c_5_result).
result(trial_on_rich_growthrate_ylr209c_5_result).
has_part(trial_on_rich_growthrate_ylr209c_5_result,trial_on_rich_growthrate_ylr209c_5_result_1).
has_representation(trial_on_rich_growthrate_ylr209c_5_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_ylr209c_5_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_ylr209c_5_result_1,trial_on_rich_growthrate_ylr209c_5_result_1_proc).
procedure(trial_on_rich_growthrate_ylr209c_5_result_1_proc).
has_representation(trial_on_rich_growthrate_ylr209c_5_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ylr209c_5_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_ylr209c_5_result,trial_on_rich_growthrate_ylr209c_5_result_2).
has_representation(trial_on_rich_growthrate_ylr209c_5_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_ylr209c_5_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_ylr209c_5_result_2,trial_on_rich_growthrate_ylr209c_5_result_2_proc).
procedure(trial_on_rich_growthrate_ylr209c_5_result_2_proc).
has_representation(trial_on_rich_growthrate_ylr209c_5_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ylr209c_5_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_ylr209c_6,trial_on_rich_growthrate_ylr209c_6_design).
design(trial_on_rich_growthrate_ylr209c_6_design).
has_proposition(trial_on_rich_growthrate_ylr209c_6_design,trial_on_rich_growthrate_ylr209c_6_factor).
factor(trial_on_rich_growthrate_ylr209c_6_factor).
has_representation(trial_on_rich_growthrate_ylr209c_6_factor,'presence or absence of ylr209c').
has_input(trial_on_rich_growthrate_ylr209c_6,trial_on_rich_growthrate_ylr209c_6_data).
data(trial_on_rich_growthrate_ylr209c_6_data).
has_part(trial_on_rich_growthrate_ylr209c_6_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_ylr209c_6_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_ylr209c_6_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_ylr209c_6,'mar07-trial6_expt001-plate001').
plate('mar07-trial6_expt001-plate001').
has_proposition(trial_on_rich_growthrate_ylr209c_6,trial_on_rich_growthrate_ylr209c_6_result).
result(trial_on_rich_growthrate_ylr209c_6_result).
has_part(trial_on_rich_growthrate_ylr209c_6_result,trial_on_rich_growthrate_ylr209c_6_result_1).
has_representation(trial_on_rich_growthrate_ylr209c_6_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_ylr209c_6_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_ylr209c_6_result_1,trial_on_rich_growthrate_ylr209c_6_result_1_proc).
procedure(trial_on_rich_growthrate_ylr209c_6_result_1_proc).
has_representation(trial_on_rich_growthrate_ylr209c_6_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ylr209c_6_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_ylr209c_6_result,trial_on_rich_growthrate_ylr209c_6_result_2).
has_representation(trial_on_rich_growthrate_ylr209c_6_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_ylr209c_6_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_ylr209c_6_result_2,trial_on_rich_growthrate_ylr209c_6_result_2_proc).
procedure(trial_on_rich_growthrate_ylr209c_6_result_2_proc).
has_representation(trial_on_rich_growthrate_ylr209c_6_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ylr209c_6_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_ylr209c_7,trial_on_rich_growthrate_ylr209c_7_design).
design(trial_on_rich_growthrate_ylr209c_7_design).
has_proposition(trial_on_rich_growthrate_ylr209c_7_design,trial_on_rich_growthrate_ylr209c_7_factor).
factor(trial_on_rich_growthrate_ylr209c_7_factor).
has_representation(trial_on_rich_growthrate_ylr209c_7_factor,'presence or absence of ylr209c').
has_input(trial_on_rich_growthrate_ylr209c_7,trial_on_rich_growthrate_ylr209c_7_data).
data(trial_on_rich_growthrate_ylr209c_7_data).
has_part(trial_on_rich_growthrate_ylr209c_7_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_ylr209c_7_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_ylr209c_7_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_ylr209c_7,'mar07-trial6_expt001-plate002').
plate('mar07-trial6_expt001-plate002').
has_proposition(trial_on_rich_growthrate_ylr209c_7,trial_on_rich_growthrate_ylr209c_7_result).
result(trial_on_rich_growthrate_ylr209c_7_result).
has_part(trial_on_rich_growthrate_ylr209c_7_result,trial_on_rich_growthrate_ylr209c_7_result_1).
has_representation(trial_on_rich_growthrate_ylr209c_7_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_ylr209c_7_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_ylr209c_7_result_1,trial_on_rich_growthrate_ylr209c_7_result_1_proc).
procedure(trial_on_rich_growthrate_ylr209c_7_result_1_proc).
has_representation(trial_on_rich_growthrate_ylr209c_7_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ylr209c_7_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_ylr209c_7_result,trial_on_rich_growthrate_ylr209c_7_result_2).
has_representation(trial_on_rich_growthrate_ylr209c_7_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_ylr209c_7_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_ylr209c_7_result_2,trial_on_rich_growthrate_ylr209c_7_result_2_proc).
procedure(trial_on_rich_growthrate_ylr209c_7_result_2_proc).
has_representation(trial_on_rich_growthrate_ylr209c_7_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ylr209c_7_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_ylr209c_8,trial_on_rich_growthrate_ylr209c_8_design).
design(trial_on_rich_growthrate_ylr209c_8_design).
has_proposition(trial_on_rich_growthrate_ylr209c_8_design,trial_on_rich_growthrate_ylr209c_8_factor).
factor(trial_on_rich_growthrate_ylr209c_8_factor).
has_representation(trial_on_rich_growthrate_ylr209c_8_factor,'presence or absence of ylr209c').
has_input(trial_on_rich_growthrate_ylr209c_8,trial_on_rich_growthrate_ylr209c_8_data).
data(trial_on_rich_growthrate_ylr209c_8_data).
has_part(trial_on_rich_growthrate_ylr209c_8_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_ylr209c_8_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_ylr209c_8_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_ylr209c_8,'mar07-trial6_expt001-plate004').
plate('mar07-trial6_expt001-plate004').
has_proposition(trial_on_rich_growthrate_ylr209c_8,trial_on_rich_growthrate_ylr209c_8_result).
result(trial_on_rich_growthrate_ylr209c_8_result).
has_part(trial_on_rich_growthrate_ylr209c_8_result,trial_on_rich_growthrate_ylr209c_8_result_1).
has_representation(trial_on_rich_growthrate_ylr209c_8_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_ylr209c_8_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_ylr209c_8_result_1,trial_on_rich_growthrate_ylr209c_8_result_1_proc).
procedure(trial_on_rich_growthrate_ylr209c_8_result_1_proc).
has_representation(trial_on_rich_growthrate_ylr209c_8_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ylr209c_8_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_ylr209c_8_result,trial_on_rich_growthrate_ylr209c_8_result_2).
has_representation(trial_on_rich_growthrate_ylr209c_8_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_ylr209c_8_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_ylr209c_8_result_2,trial_on_rich_growthrate_ylr209c_8_result_2_proc).
procedure(trial_on_rich_growthrate_ylr209c_8_result_2_proc).
has_representation(trial_on_rich_growthrate_ylr209c_8_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ylr209c_8_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_ylr209c_9,trial_on_rich_growthrate_ylr209c_9_design).
design(trial_on_rich_growthrate_ylr209c_9_design).
has_proposition(trial_on_rich_growthrate_ylr209c_9_design,trial_on_rich_growthrate_ylr209c_9_factor).
factor(trial_on_rich_growthrate_ylr209c_9_factor).
has_representation(trial_on_rich_growthrate_ylr209c_9_factor,'presence or absence of ylr209c').
has_input(trial_on_rich_growthrate_ylr209c_9,trial_on_rich_growthrate_ylr209c_9_data).
data(trial_on_rich_growthrate_ylr209c_9_data).
has_part(trial_on_rich_growthrate_ylr209c_9_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_ylr209c_9_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_ylr209c_9_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_ylr209c_9,'mar07-trial6_expt001-plate006').
plate('mar07-trial6_expt001-plate006').
has_proposition(trial_on_rich_growthrate_ylr209c_9,trial_on_rich_growthrate_ylr209c_9_result).
result(trial_on_rich_growthrate_ylr209c_9_result).
has_part(trial_on_rich_growthrate_ylr209c_9_result,trial_on_rich_growthrate_ylr209c_9_result_1).
has_representation(trial_on_rich_growthrate_ylr209c_9_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_ylr209c_9_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_ylr209c_9_result_1,trial_on_rich_growthrate_ylr209c_9_result_1_proc).
procedure(trial_on_rich_growthrate_ylr209c_9_result_1_proc).
has_representation(trial_on_rich_growthrate_ylr209c_9_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ylr209c_9_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_ylr209c_9_result,trial_on_rich_growthrate_ylr209c_9_result_2).
has_representation(trial_on_rich_growthrate_ylr209c_9_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_ylr209c_9_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_ylr209c_9_result_2,trial_on_rich_growthrate_ylr209c_9_result_2_proc).
procedure(trial_on_rich_growthrate_ylr209c_9_result_2_proc).
has_representation(trial_on_rich_growthrate_ylr209c_9_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ylr209c_9_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_ylr209c_10,trial_on_rich_growthrate_ylr209c_10_design).
design(trial_on_rich_growthrate_ylr209c_10_design).
has_proposition(trial_on_rich_growthrate_ylr209c_10_design,trial_on_rich_growthrate_ylr209c_10_factor).
factor(trial_on_rich_growthrate_ylr209c_10_factor).
has_representation(trial_on_rich_growthrate_ylr209c_10_factor,'presence or absence of ylr209c').
has_input(trial_on_rich_growthrate_ylr209c_10,trial_on_rich_growthrate_ylr209c_10_data).
data(trial_on_rich_growthrate_ylr209c_10_data).
has_part(trial_on_rich_growthrate_ylr209c_10_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_ylr209c_10_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_ylr209c_10_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_ylr209c_10,'mar07-trial6_expt001-plate007').
plate('mar07-trial6_expt001-plate007').
has_proposition(trial_on_rich_growthrate_ylr209c_10,trial_on_rich_growthrate_ylr209c_10_result).
result(trial_on_rich_growthrate_ylr209c_10_result).
has_part(trial_on_rich_growthrate_ylr209c_10_result,trial_on_rich_growthrate_ylr209c_10_result_1).
has_representation(trial_on_rich_growthrate_ylr209c_10_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_ylr209c_10_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_ylr209c_10_result_1,trial_on_rich_growthrate_ylr209c_10_result_1_proc).
procedure(trial_on_rich_growthrate_ylr209c_10_result_1_proc).
has_representation(trial_on_rich_growthrate_ylr209c_10_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ylr209c_10_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_ylr209c_10_result,trial_on_rich_growthrate_ylr209c_10_result_2).
has_representation(trial_on_rich_growthrate_ylr209c_10_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_ylr209c_10_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_ylr209c_10_result_2,trial_on_rich_growthrate_ylr209c_10_result_2_proc).
procedure(trial_on_rich_growthrate_ylr209c_10_result_2_proc).
has_representation(trial_on_rich_growthrate_ylr209c_10_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ylr209c_10_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_ylr209c_11,trial_on_rich_growthrate_ylr209c_11_design).
design(trial_on_rich_growthrate_ylr209c_11_design).
has_proposition(trial_on_rich_growthrate_ylr209c_11_design,trial_on_rich_growthrate_ylr209c_11_factor).
factor(trial_on_rich_growthrate_ylr209c_11_factor).
has_representation(trial_on_rich_growthrate_ylr209c_11_factor,'presence or absence of ylr209c').
has_input(trial_on_rich_growthrate_ylr209c_11,trial_on_rich_growthrate_ylr209c_11_data).
data(trial_on_rich_growthrate_ylr209c_11_data).
has_part(trial_on_rich_growthrate_ylr209c_11_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_ylr209c_11_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_ylr209c_11_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_ylr209c_11,'mar07-trial6_expt001-plate008').
plate('mar07-trial6_expt001-plate008').
has_proposition(trial_on_rich_growthrate_ylr209c_11,trial_on_rich_growthrate_ylr209c_11_result).
result(trial_on_rich_growthrate_ylr209c_11_result).
has_part(trial_on_rich_growthrate_ylr209c_11_result,trial_on_rich_growthrate_ylr209c_11_result_1).
has_representation(trial_on_rich_growthrate_ylr209c_11_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_ylr209c_11_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_ylr209c_11_result_1,trial_on_rich_growthrate_ylr209c_11_result_1_proc).
procedure(trial_on_rich_growthrate_ylr209c_11_result_1_proc).
has_representation(trial_on_rich_growthrate_ylr209c_11_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ylr209c_11_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_ylr209c_11_result,trial_on_rich_growthrate_ylr209c_11_result_2).
has_representation(trial_on_rich_growthrate_ylr209c_11_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_ylr209c_11_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_ylr209c_11_result_2,trial_on_rich_growthrate_ylr209c_11_result_2_proc).
procedure(trial_on_rich_growthrate_ylr209c_11_result_2_proc).
has_representation(trial_on_rich_growthrate_ylr209c_11_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ylr209c_11_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_ylr209c_12,trial_on_rich_growthrate_ylr209c_12_design).
design(trial_on_rich_growthrate_ylr209c_12_design).
has_proposition(trial_on_rich_growthrate_ylr209c_12_design,trial_on_rich_growthrate_ylr209c_12_factor).
factor(trial_on_rich_growthrate_ylr209c_12_factor).
has_representation(trial_on_rich_growthrate_ylr209c_12_factor,'presence or absence of ylr209c').
has_input(trial_on_rich_growthrate_ylr209c_12,trial_on_rich_growthrate_ylr209c_12_data).
data(trial_on_rich_growthrate_ylr209c_12_data).
has_part(trial_on_rich_growthrate_ylr209c_12_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_ylr209c_12_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_ylr209c_12_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_ylr209c_12,'mar07-trial9_expt001-plate005').
plate('mar07-trial9_expt001-plate005').
has_proposition(trial_on_rich_growthrate_ylr209c_12,trial_on_rich_growthrate_ylr209c_12_result).
result(trial_on_rich_growthrate_ylr209c_12_result).
has_part(trial_on_rich_growthrate_ylr209c_12_result,trial_on_rich_growthrate_ylr209c_12_result_1).
has_representation(trial_on_rich_growthrate_ylr209c_12_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_ylr209c_12_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_ylr209c_12_result_1,trial_on_rich_growthrate_ylr209c_12_result_1_proc).
procedure(trial_on_rich_growthrate_ylr209c_12_result_1_proc).
has_representation(trial_on_rich_growthrate_ylr209c_12_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ylr209c_12_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_ylr209c_12_result,trial_on_rich_growthrate_ylr209c_12_result_2).
has_representation(trial_on_rich_growthrate_ylr209c_12_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_ylr209c_12_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_ylr209c_12_result_2,trial_on_rich_growthrate_ylr209c_12_result_2_proc).
procedure(trial_on_rich_growthrate_ylr209c_12_result_2_proc).
has_representation(trial_on_rich_growthrate_ylr209c_12_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ylr209c_12_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_ylr209c,trial_on_rich_growthrate_ylr209c_results).
result(trial_on_rich_growthrate_ylr209c_results).
has_part(trial_on_rich_growthrate_ylr209c_results,trial_on_rich_growthrate_ylr209c_results_1).
has_representation(trial_on_rich_growthrate_ylr209c_results_1,'median of knockout medians missing ylr209c').
text_representation('median of knockout medians missing ylr209c').
has_proposition(trial_on_rich_growthrate_ylr209c_results_1,trial_on_rich_growthrate_ylr209c_results_1_proc).
procedure(trial_on_rich_growthrate_ylr209c_results_1_proc).
has_proposition(trial_on_rich_growthrate_ylr209c_results_1_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_rich_growthrate_ylr209c_results,trial_on_rich_growthrate_ylr209c_results_2).
has_representation(trial_on_rich_growthrate_ylr209c_results_2,'median of wild type medians').
text_representation('median of wild type medians').
has_proposition(trial_on_rich_growthrate_ylr209c_results_2,trial_on_rich_growthrate_ylr209c_results_2_proc).
procedure(trial_on_rich_growthrate_ylr209c_results_2_proc).
has_proposition(trial_on_rich_growthrate_ylr209c_results_2_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_rich_growthrate_ylr209c_results,trial_on_rich_growthrate_ylr209c_results_3).
has_representation(trial_on_rich_growthrate_ylr209c_results_3,'difference between trial_on_rich_growthrate_ylr209c_results_1 and trial_on_rich_growthrate_ylr209c_results_2').
text_representation('difference between trial_on_rich_growthrate_ylr209c_results_1 and trial_on_rich_growthrate_ylr209c_results_2').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_result).
result(study_on_rich_growthrate_result).
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_1).
has_representation(study_on_rich_growthrate_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_rich_growthrate_result_1,'results/wr_kr_growth_rate.csv').
link('results/wr_kr_growth_rate.csv').
has_proposition(study_on_rich_growthrate_result_1,study_on_rich_growthrate_result_1_proc).
procedure(study_on_rich_growthrate_result_1_proc).
has_proposition(study_on_rich_growthrate_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_2).
has_representation(study_on_rich_growthrate_result_2,'bar graph (histogram) plotting study_on_rich_growthrate_result_1').
text_representation('bar graph (histogram) plotting study_on_rich_growthrate_result_1').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate1.tiff').
link('results/kr_wr_growth_rate1.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate2.tiff').
link('results/kr_wr_growth_rate2.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/overlayed_growth_rate.tiff').
link('results/overlayed_growth_rate.tiff').
has_proposition(study_on_rich_growthrate_result_2,study_on_rich_growthrate_result_2_proc).
procedure(study_on_rich_growthrate_result_2_proc).
has_proposition(study_on_rich_growthrate_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_conclusion).
conclusion(study_on_rich_growthrate_conclusion).
has_representation(study_on_rich_growthrate_conclusion,'The knockouts have higher growth rate in rich than the wild type').
text_representation('The knockouts have higher growth rate in rich than the wild type').
has_proposition(study_on_rich_growthrate_conclusion,'obtain statistical mode of study_on_rich_growthrate_result_1').
procedure('obtain statistical mode of study_on_rich_growthrate_result_1').
text_representation('obtain statistical mode of study_on_rich_growthrate_result_1').
has_part(study_on_rich_growthrate,trial_on_rich_growthrate_yjl060w).
trial(trial_on_rich_growthrate_yjl060w).
has_agent(trial_on_rich_growthrate_yjl060w,yjl060w).
strain(yjl060w).
has_proposition(trial_on_rich_growthrate_yjl060w_1,trial_on_rich_growthrate_yjl060w_1_design).
design(trial_on_rich_growthrate_yjl060w_1_design).
has_proposition(trial_on_rich_growthrate_yjl060w_1_design,trial_on_rich_growthrate_yjl060w_1_factor).
factor(trial_on_rich_growthrate_yjl060w_1_factor).
has_representation(trial_on_rich_growthrate_yjl060w_1_factor,'presence or absence of yjl060w').
has_input(trial_on_rich_growthrate_yjl060w_1,trial_on_rich_growthrate_yjl060w_1_data).
data(trial_on_rich_growthrate_yjl060w_1_data).
has_part(trial_on_rich_growthrate_yjl060w_1_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_yjl060w_1_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_yjl060w_1_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_yjl060w_1,'jan07-lyss1_expt001-plate004').
plate('jan07-lyss1_expt001-plate004').
has_proposition(trial_on_rich_growthrate_yjl060w_1,trial_on_rich_growthrate_yjl060w_1_result).
result(trial_on_rich_growthrate_yjl060w_1_result).
has_part(trial_on_rich_growthrate_yjl060w_1_result,trial_on_rich_growthrate_yjl060w_1_result_1).
has_representation(trial_on_rich_growthrate_yjl060w_1_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_yjl060w_1_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_yjl060w_1_result_1,trial_on_rich_growthrate_yjl060w_1_result_1_proc).
procedure(trial_on_rich_growthrate_yjl060w_1_result_1_proc).
has_representation(trial_on_rich_growthrate_yjl060w_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_yjl060w_1_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_yjl060w_1_result,trial_on_rich_growthrate_yjl060w_1_result_2).
has_representation(trial_on_rich_growthrate_yjl060w_1_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_yjl060w_1_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_yjl060w_1_result_2,trial_on_rich_growthrate_yjl060w_1_result_2_proc).
procedure(trial_on_rich_growthrate_yjl060w_1_result_2_proc).
has_representation(trial_on_rich_growthrate_yjl060w_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_yjl060w_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_yjl060w_2,trial_on_rich_growthrate_yjl060w_2_design).
design(trial_on_rich_growthrate_yjl060w_2_design).
has_proposition(trial_on_rich_growthrate_yjl060w_2_design,trial_on_rich_growthrate_yjl060w_2_factor).
factor(trial_on_rich_growthrate_yjl060w_2_factor).
has_representation(trial_on_rich_growthrate_yjl060w_2_factor,'presence or absence of yjl060w').
has_input(trial_on_rich_growthrate_yjl060w_2,trial_on_rich_growthrate_yjl060w_2_data).
data(trial_on_rich_growthrate_yjl060w_2_data).
has_part(trial_on_rich_growthrate_yjl060w_2_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_yjl060w_2_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_yjl060w_2_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_yjl060w_2,'jan07-lyss1_expt001-plate005').
plate('jan07-lyss1_expt001-plate005').
has_proposition(trial_on_rich_growthrate_yjl060w_2,trial_on_rich_growthrate_yjl060w_2_result).
result(trial_on_rich_growthrate_yjl060w_2_result).
has_part(trial_on_rich_growthrate_yjl060w_2_result,trial_on_rich_growthrate_yjl060w_2_result_1).
has_representation(trial_on_rich_growthrate_yjl060w_2_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_yjl060w_2_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_yjl060w_2_result_1,trial_on_rich_growthrate_yjl060w_2_result_1_proc).
procedure(trial_on_rich_growthrate_yjl060w_2_result_1_proc).
has_representation(trial_on_rich_growthrate_yjl060w_2_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_yjl060w_2_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_yjl060w_2_result,trial_on_rich_growthrate_yjl060w_2_result_2).
has_representation(trial_on_rich_growthrate_yjl060w_2_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_yjl060w_2_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_yjl060w_2_result_2,trial_on_rich_growthrate_yjl060w_2_result_2_proc).
procedure(trial_on_rich_growthrate_yjl060w_2_result_2_proc).
has_representation(trial_on_rich_growthrate_yjl060w_2_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_yjl060w_2_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_yjl060w_3,trial_on_rich_growthrate_yjl060w_3_design).
design(trial_on_rich_growthrate_yjl060w_3_design).
has_proposition(trial_on_rich_growthrate_yjl060w_3_design,trial_on_rich_growthrate_yjl060w_3_factor).
factor(trial_on_rich_growthrate_yjl060w_3_factor).
has_representation(trial_on_rich_growthrate_yjl060w_3_factor,'presence or absence of yjl060w').
has_input(trial_on_rich_growthrate_yjl060w_3,trial_on_rich_growthrate_yjl060w_3_data).
data(trial_on_rich_growthrate_yjl060w_3_data).
has_part(trial_on_rich_growthrate_yjl060w_3_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_yjl060w_3_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_yjl060w_3_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_yjl060w_3,'jan07-lyss1_expt001-plate006').
plate('jan07-lyss1_expt001-plate006').
has_proposition(trial_on_rich_growthrate_yjl060w_3,trial_on_rich_growthrate_yjl060w_3_result).
result(trial_on_rich_growthrate_yjl060w_3_result).
has_part(trial_on_rich_growthrate_yjl060w_3_result,trial_on_rich_growthrate_yjl060w_3_result_1).
has_representation(trial_on_rich_growthrate_yjl060w_3_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_yjl060w_3_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_yjl060w_3_result_1,trial_on_rich_growthrate_yjl060w_3_result_1_proc).
procedure(trial_on_rich_growthrate_yjl060w_3_result_1_proc).
has_representation(trial_on_rich_growthrate_yjl060w_3_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_yjl060w_3_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_yjl060w_3_result,trial_on_rich_growthrate_yjl060w_3_result_2).
has_representation(trial_on_rich_growthrate_yjl060w_3_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_yjl060w_3_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_yjl060w_3_result_2,trial_on_rich_growthrate_yjl060w_3_result_2_proc).
procedure(trial_on_rich_growthrate_yjl060w_3_result_2_proc).
has_representation(trial_on_rich_growthrate_yjl060w_3_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_yjl060w_3_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_yjl060w,trial_on_rich_growthrate_yjl060w_results).
result(trial_on_rich_growthrate_yjl060w_results).
has_part(trial_on_rich_growthrate_yjl060w_results,trial_on_rich_growthrate_yjl060w_results_1).
has_representation(trial_on_rich_growthrate_yjl060w_results_1,'median of knockout medians missing yjl060w').
text_representation('median of knockout medians missing yjl060w').
has_proposition(trial_on_rich_growthrate_yjl060w_results_1,trial_on_rich_growthrate_yjl060w_results_1_proc).
procedure(trial_on_rich_growthrate_yjl060w_results_1_proc).
has_proposition(trial_on_rich_growthrate_yjl060w_results_1_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_rich_growthrate_yjl060w_results,trial_on_rich_growthrate_yjl060w_results_2).
has_representation(trial_on_rich_growthrate_yjl060w_results_2,'median of wild type medians').
text_representation('median of wild type medians').
has_proposition(trial_on_rich_growthrate_yjl060w_results_2,trial_on_rich_growthrate_yjl060w_results_2_proc).
procedure(trial_on_rich_growthrate_yjl060w_results_2_proc).
has_proposition(trial_on_rich_growthrate_yjl060w_results_2_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_rich_growthrate_yjl060w_results,trial_on_rich_growthrate_yjl060w_results_3).
has_representation(trial_on_rich_growthrate_yjl060w_results_3,'difference between trial_on_rich_growthrate_yjl060w_results_1 and trial_on_rich_growthrate_yjl060w_results_2').
text_representation('difference between trial_on_rich_growthrate_yjl060w_results_1 and trial_on_rich_growthrate_yjl060w_results_2').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_result).
result(study_on_rich_growthrate_result).
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_1).
has_representation(study_on_rich_growthrate_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_rich_growthrate_result_1,'results/wr_kr_growth_rate.csv').
link('results/wr_kr_growth_rate.csv').
has_proposition(study_on_rich_growthrate_result_1,study_on_rich_growthrate_result_1_proc).
procedure(study_on_rich_growthrate_result_1_proc).
has_proposition(study_on_rich_growthrate_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_2).
has_representation(study_on_rich_growthrate_result_2,'bar graph (histogram) plotting study_on_rich_growthrate_result_1').
text_representation('bar graph (histogram) plotting study_on_rich_growthrate_result_1').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate1.tiff').
link('results/kr_wr_growth_rate1.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate2.tiff').
link('results/kr_wr_growth_rate2.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/overlayed_growth_rate.tiff').
link('results/overlayed_growth_rate.tiff').
has_proposition(study_on_rich_growthrate_result_2,study_on_rich_growthrate_result_2_proc).
procedure(study_on_rich_growthrate_result_2_proc).
has_proposition(study_on_rich_growthrate_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_conclusion).
conclusion(study_on_rich_growthrate_conclusion).
has_representation(study_on_rich_growthrate_conclusion,'The knockouts have higher growth rate in rich than the wild type').
text_representation('The knockouts have higher growth rate in rich than the wild type').
has_proposition(study_on_rich_growthrate_conclusion,'obtain statistical mode of study_on_rich_growthrate_result_1').
procedure('obtain statistical mode of study_on_rich_growthrate_result_1').
text_representation('obtain statistical mode of study_on_rich_growthrate_result_1').
has_part(study_on_rich_growthrate,trial_on_rich_growthrate_yll060c).
trial(trial_on_rich_growthrate_yll060c).
has_agent(trial_on_rich_growthrate_yll060c,yll060c).
strain(yll060c).
has_proposition(trial_on_rich_growthrate_yll060c_1,trial_on_rich_growthrate_yll060c_1_design).
design(trial_on_rich_growthrate_yll060c_1_design).
has_proposition(trial_on_rich_growthrate_yll060c_1_design,trial_on_rich_growthrate_yll060c_1_factor).
factor(trial_on_rich_growthrate_yll060c_1_factor).
has_representation(trial_on_rich_growthrate_yll060c_1_factor,'presence or absence of yll060c').
has_input(trial_on_rich_growthrate_yll060c_1,trial_on_rich_growthrate_yll060c_1_data).
data(trial_on_rich_growthrate_yll060c_1_data).
has_part(trial_on_rich_growthrate_yll060c_1_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_yll060c_1_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_yll060c_1_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_yll060c_1,'mar07-trial4_expt1-plate001').
plate('mar07-trial4_expt1-plate001').
has_proposition(trial_on_rich_growthrate_yll060c_1,trial_on_rich_growthrate_yll060c_1_result).
result(trial_on_rich_growthrate_yll060c_1_result).
has_part(trial_on_rich_growthrate_yll060c_1_result,trial_on_rich_growthrate_yll060c_1_result_1).
has_representation(trial_on_rich_growthrate_yll060c_1_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_yll060c_1_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_yll060c_1_result_1,trial_on_rich_growthrate_yll060c_1_result_1_proc).
procedure(trial_on_rich_growthrate_yll060c_1_result_1_proc).
has_representation(trial_on_rich_growthrate_yll060c_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_yll060c_1_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_yll060c_1_result,trial_on_rich_growthrate_yll060c_1_result_2).
has_representation(trial_on_rich_growthrate_yll060c_1_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_yll060c_1_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_yll060c_1_result_2,trial_on_rich_growthrate_yll060c_1_result_2_proc).
procedure(trial_on_rich_growthrate_yll060c_1_result_2_proc).
has_representation(trial_on_rich_growthrate_yll060c_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_yll060c_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_yll060c_2,trial_on_rich_growthrate_yll060c_2_design).
design(trial_on_rich_growthrate_yll060c_2_design).
has_proposition(trial_on_rich_growthrate_yll060c_2_design,trial_on_rich_growthrate_yll060c_2_factor).
factor(trial_on_rich_growthrate_yll060c_2_factor).
has_representation(trial_on_rich_growthrate_yll060c_2_factor,'presence or absence of yll060c').
has_input(trial_on_rich_growthrate_yll060c_2,trial_on_rich_growthrate_yll060c_2_data).
data(trial_on_rich_growthrate_yll060c_2_data).
has_part(trial_on_rich_growthrate_yll060c_2_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_yll060c_2_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_yll060c_2_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_yll060c_2,'mar07-trial4_expt1-plate002').
plate('mar07-trial4_expt1-plate002').
has_proposition(trial_on_rich_growthrate_yll060c_2,trial_on_rich_growthrate_yll060c_2_result).
result(trial_on_rich_growthrate_yll060c_2_result).
has_part(trial_on_rich_growthrate_yll060c_2_result,trial_on_rich_growthrate_yll060c_2_result_1).
has_representation(trial_on_rich_growthrate_yll060c_2_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_yll060c_2_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_yll060c_2_result_1,trial_on_rich_growthrate_yll060c_2_result_1_proc).
procedure(trial_on_rich_growthrate_yll060c_2_result_1_proc).
has_representation(trial_on_rich_growthrate_yll060c_2_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_yll060c_2_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_yll060c_2_result,trial_on_rich_growthrate_yll060c_2_result_2).
has_representation(trial_on_rich_growthrate_yll060c_2_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_yll060c_2_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_yll060c_2_result_2,trial_on_rich_growthrate_yll060c_2_result_2_proc).
procedure(trial_on_rich_growthrate_yll060c_2_result_2_proc).
has_representation(trial_on_rich_growthrate_yll060c_2_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_yll060c_2_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_yll060c_3,trial_on_rich_growthrate_yll060c_3_design).
design(trial_on_rich_growthrate_yll060c_3_design).
has_proposition(trial_on_rich_growthrate_yll060c_3_design,trial_on_rich_growthrate_yll060c_3_factor).
factor(trial_on_rich_growthrate_yll060c_3_factor).
has_representation(trial_on_rich_growthrate_yll060c_3_factor,'presence or absence of yll060c').
has_input(trial_on_rich_growthrate_yll060c_3,trial_on_rich_growthrate_yll060c_3_data).
data(trial_on_rich_growthrate_yll060c_3_data).
has_part(trial_on_rich_growthrate_yll060c_3_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_yll060c_3_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_yll060c_3_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_yll060c_3,'mar07-trial5_expt001-plate005').
plate('mar07-trial5_expt001-plate005').
has_proposition(trial_on_rich_growthrate_yll060c_3,trial_on_rich_growthrate_yll060c_3_result).
result(trial_on_rich_growthrate_yll060c_3_result).
has_part(trial_on_rich_growthrate_yll060c_3_result,trial_on_rich_growthrate_yll060c_3_result_1).
has_representation(trial_on_rich_growthrate_yll060c_3_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_yll060c_3_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_yll060c_3_result_1,trial_on_rich_growthrate_yll060c_3_result_1_proc).
procedure(trial_on_rich_growthrate_yll060c_3_result_1_proc).
has_representation(trial_on_rich_growthrate_yll060c_3_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_yll060c_3_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_yll060c_3_result,trial_on_rich_growthrate_yll060c_3_result_2).
has_representation(trial_on_rich_growthrate_yll060c_3_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_yll060c_3_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_yll060c_3_result_2,trial_on_rich_growthrate_yll060c_3_result_2_proc).
procedure(trial_on_rich_growthrate_yll060c_3_result_2_proc).
has_representation(trial_on_rich_growthrate_yll060c_3_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_yll060c_3_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_yll060c_4,trial_on_rich_growthrate_yll060c_4_design).
design(trial_on_rich_growthrate_yll060c_4_design).
has_proposition(trial_on_rich_growthrate_yll060c_4_design,trial_on_rich_growthrate_yll060c_4_factor).
factor(trial_on_rich_growthrate_yll060c_4_factor).
has_representation(trial_on_rich_growthrate_yll060c_4_factor,'presence or absence of yll060c').
has_input(trial_on_rich_growthrate_yll060c_4,trial_on_rich_growthrate_yll060c_4_data).
data(trial_on_rich_growthrate_yll060c_4_data).
has_part(trial_on_rich_growthrate_yll060c_4_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_yll060c_4_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_yll060c_4_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_yll060c_4,'mar07-trial9_expt001-plate001').
plate('mar07-trial9_expt001-plate001').
has_proposition(trial_on_rich_growthrate_yll060c_4,trial_on_rich_growthrate_yll060c_4_result).
result(trial_on_rich_growthrate_yll060c_4_result).
has_part(trial_on_rich_growthrate_yll060c_4_result,trial_on_rich_growthrate_yll060c_4_result_1).
has_representation(trial_on_rich_growthrate_yll060c_4_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_yll060c_4_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_yll060c_4_result_1,trial_on_rich_growthrate_yll060c_4_result_1_proc).
procedure(trial_on_rich_growthrate_yll060c_4_result_1_proc).
has_representation(trial_on_rich_growthrate_yll060c_4_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_yll060c_4_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_yll060c_4_result,trial_on_rich_growthrate_yll060c_4_result_2).
has_representation(trial_on_rich_growthrate_yll060c_4_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_yll060c_4_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_yll060c_4_result_2,trial_on_rich_growthrate_yll060c_4_result_2_proc).
procedure(trial_on_rich_growthrate_yll060c_4_result_2_proc).
has_representation(trial_on_rich_growthrate_yll060c_4_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_yll060c_4_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_yll060c_5,trial_on_rich_growthrate_yll060c_5_design).
design(trial_on_rich_growthrate_yll060c_5_design).
has_proposition(trial_on_rich_growthrate_yll060c_5_design,trial_on_rich_growthrate_yll060c_5_factor).
factor(trial_on_rich_growthrate_yll060c_5_factor).
has_representation(trial_on_rich_growthrate_yll060c_5_factor,'presence or absence of yll060c').
has_input(trial_on_rich_growthrate_yll060c_5,trial_on_rich_growthrate_yll060c_5_data).
data(trial_on_rich_growthrate_yll060c_5_data).
has_part(trial_on_rich_growthrate_yll060c_5_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_yll060c_5_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_yll060c_5_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_yll060c_5,'mar07-trial9_expt001-plate002').
plate('mar07-trial9_expt001-plate002').
has_proposition(trial_on_rich_growthrate_yll060c_5,trial_on_rich_growthrate_yll060c_5_result).
result(trial_on_rich_growthrate_yll060c_5_result).
has_part(trial_on_rich_growthrate_yll060c_5_result,trial_on_rich_growthrate_yll060c_5_result_1).
has_representation(trial_on_rich_growthrate_yll060c_5_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_yll060c_5_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_yll060c_5_result_1,trial_on_rich_growthrate_yll060c_5_result_1_proc).
procedure(trial_on_rich_growthrate_yll060c_5_result_1_proc).
has_representation(trial_on_rich_growthrate_yll060c_5_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_yll060c_5_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_yll060c_5_result,trial_on_rich_growthrate_yll060c_5_result_2).
has_representation(trial_on_rich_growthrate_yll060c_5_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_yll060c_5_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_yll060c_5_result_2,trial_on_rich_growthrate_yll060c_5_result_2_proc).
procedure(trial_on_rich_growthrate_yll060c_5_result_2_proc).
has_representation(trial_on_rich_growthrate_yll060c_5_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_yll060c_5_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_yll060c,trial_on_rich_growthrate_yll060c_results).
result(trial_on_rich_growthrate_yll060c_results).
has_part(trial_on_rich_growthrate_yll060c_results,trial_on_rich_growthrate_yll060c_results_1).
has_representation(trial_on_rich_growthrate_yll060c_results_1,'median of knockout medians missing yll060c').
text_representation('median of knockout medians missing yll060c').
has_proposition(trial_on_rich_growthrate_yll060c_results_1,trial_on_rich_growthrate_yll060c_results_1_proc).
procedure(trial_on_rich_growthrate_yll060c_results_1_proc).
has_proposition(trial_on_rich_growthrate_yll060c_results_1_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_rich_growthrate_yll060c_results,trial_on_rich_growthrate_yll060c_results_2).
has_representation(trial_on_rich_growthrate_yll060c_results_2,'median of wild type medians').
text_representation('median of wild type medians').
has_proposition(trial_on_rich_growthrate_yll060c_results_2,trial_on_rich_growthrate_yll060c_results_2_proc).
procedure(trial_on_rich_growthrate_yll060c_results_2_proc).
has_proposition(trial_on_rich_growthrate_yll060c_results_2_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_rich_growthrate_yll060c_results,trial_on_rich_growthrate_yll060c_results_3).
has_representation(trial_on_rich_growthrate_yll060c_results_3,'difference between trial_on_rich_growthrate_yll060c_results_1 and trial_on_rich_growthrate_yll060c_results_2').
text_representation('difference between trial_on_rich_growthrate_yll060c_results_1 and trial_on_rich_growthrate_yll060c_results_2').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_result).
result(study_on_rich_growthrate_result).
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_1).
has_representation(study_on_rich_growthrate_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_rich_growthrate_result_1,'results/wr_kr_growth_rate.csv').
link('results/wr_kr_growth_rate.csv').
has_proposition(study_on_rich_growthrate_result_1,study_on_rich_growthrate_result_1_proc).
procedure(study_on_rich_growthrate_result_1_proc).
has_proposition(study_on_rich_growthrate_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_2).
has_representation(study_on_rich_growthrate_result_2,'bar graph (histogram) plotting study_on_rich_growthrate_result_1').
text_representation('bar graph (histogram) plotting study_on_rich_growthrate_result_1').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate1.tiff').
link('results/kr_wr_growth_rate1.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate2.tiff').
link('results/kr_wr_growth_rate2.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/overlayed_growth_rate.tiff').
link('results/overlayed_growth_rate.tiff').
has_proposition(study_on_rich_growthrate_result_2,study_on_rich_growthrate_result_2_proc).
procedure(study_on_rich_growthrate_result_2_proc).
has_proposition(study_on_rich_growthrate_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_conclusion).
conclusion(study_on_rich_growthrate_conclusion).
has_representation(study_on_rich_growthrate_conclusion,'The knockouts have higher growth rate in rich than the wild type').
text_representation('The knockouts have higher growth rate in rich than the wild type').
has_proposition(study_on_rich_growthrate_conclusion,'obtain statistical mode of study_on_rich_growthrate_result_1').
procedure('obtain statistical mode of study_on_rich_growthrate_result_1').
text_representation('obtain statistical mode of study_on_rich_growthrate_result_1').
has_part(study_on_rich_growthrate,trial_on_rich_growthrate_ylr070c).
trial(trial_on_rich_growthrate_ylr070c).
has_agent(trial_on_rich_growthrate_ylr070c,ylr070c).
strain(ylr070c).
has_proposition(trial_on_rich_growthrate_ylr070c_1,trial_on_rich_growthrate_ylr070c_1_design).
design(trial_on_rich_growthrate_ylr070c_1_design).
has_proposition(trial_on_rich_growthrate_ylr070c_1_design,trial_on_rich_growthrate_ylr070c_1_factor).
factor(trial_on_rich_growthrate_ylr070c_1_factor).
has_representation(trial_on_rich_growthrate_ylr070c_1_factor,'presence or absence of ylr070c').
has_input(trial_on_rich_growthrate_ylr070c_1,trial_on_rich_growthrate_ylr070c_1_data).
data(trial_on_rich_growthrate_ylr070c_1_data).
has_part(trial_on_rich_growthrate_ylr070c_1_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_ylr070c_1_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_ylr070c_1_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_ylr070c_1,'jan07-trial1_expt001-plate002').
plate('jan07-trial1_expt001-plate002').
has_proposition(trial_on_rich_growthrate_ylr070c_1,trial_on_rich_growthrate_ylr070c_1_result).
result(trial_on_rich_growthrate_ylr070c_1_result).
has_part(trial_on_rich_growthrate_ylr070c_1_result,trial_on_rich_growthrate_ylr070c_1_result_1).
has_representation(trial_on_rich_growthrate_ylr070c_1_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_ylr070c_1_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_ylr070c_1_result_1,trial_on_rich_growthrate_ylr070c_1_result_1_proc).
procedure(trial_on_rich_growthrate_ylr070c_1_result_1_proc).
has_representation(trial_on_rich_growthrate_ylr070c_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ylr070c_1_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_ylr070c_1_result,trial_on_rich_growthrate_ylr070c_1_result_2).
has_representation(trial_on_rich_growthrate_ylr070c_1_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_ylr070c_1_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_ylr070c_1_result_2,trial_on_rich_growthrate_ylr070c_1_result_2_proc).
procedure(trial_on_rich_growthrate_ylr070c_1_result_2_proc).
has_representation(trial_on_rich_growthrate_ylr070c_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ylr070c_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_ylr070c_2,trial_on_rich_growthrate_ylr070c_2_design).
design(trial_on_rich_growthrate_ylr070c_2_design).
has_proposition(trial_on_rich_growthrate_ylr070c_2_design,trial_on_rich_growthrate_ylr070c_2_factor).
factor(trial_on_rich_growthrate_ylr070c_2_factor).
has_representation(trial_on_rich_growthrate_ylr070c_2_factor,'presence or absence of ylr070c').
has_input(trial_on_rich_growthrate_ylr070c_2,trial_on_rich_growthrate_ylr070c_2_data).
data(trial_on_rich_growthrate_ylr070c_2_data).
has_part(trial_on_rich_growthrate_ylr070c_2_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_ylr070c_2_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_ylr070c_2_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_ylr070c_2,'jan07-trial1_expt001-plate003').
plate('jan07-trial1_expt001-plate003').
has_proposition(trial_on_rich_growthrate_ylr070c_2,trial_on_rich_growthrate_ylr070c_2_result).
result(trial_on_rich_growthrate_ylr070c_2_result).
has_part(trial_on_rich_growthrate_ylr070c_2_result,trial_on_rich_growthrate_ylr070c_2_result_1).
has_representation(trial_on_rich_growthrate_ylr070c_2_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_ylr070c_2_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_ylr070c_2_result_1,trial_on_rich_growthrate_ylr070c_2_result_1_proc).
procedure(trial_on_rich_growthrate_ylr070c_2_result_1_proc).
has_representation(trial_on_rich_growthrate_ylr070c_2_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ylr070c_2_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_ylr070c_2_result,trial_on_rich_growthrate_ylr070c_2_result_2).
has_representation(trial_on_rich_growthrate_ylr070c_2_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_ylr070c_2_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_ylr070c_2_result_2,trial_on_rich_growthrate_ylr070c_2_result_2_proc).
procedure(trial_on_rich_growthrate_ylr070c_2_result_2_proc).
has_representation(trial_on_rich_growthrate_ylr070c_2_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ylr070c_2_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_ylr070c_3,trial_on_rich_growthrate_ylr070c_3_design).
design(trial_on_rich_growthrate_ylr070c_3_design).
has_proposition(trial_on_rich_growthrate_ylr070c_3_design,trial_on_rich_growthrate_ylr070c_3_factor).
factor(trial_on_rich_growthrate_ylr070c_3_factor).
has_representation(trial_on_rich_growthrate_ylr070c_3_factor,'presence or absence of ylr070c').
has_input(trial_on_rich_growthrate_ylr070c_3,trial_on_rich_growthrate_ylr070c_3_data).
data(trial_on_rich_growthrate_ylr070c_3_data).
has_part(trial_on_rich_growthrate_ylr070c_3_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_ylr070c_3_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_ylr070c_3_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_ylr070c_3,'jan07-trial2_expt001-plate007').
plate('jan07-trial2_expt001-plate007').
has_proposition(trial_on_rich_growthrate_ylr070c_3,trial_on_rich_growthrate_ylr070c_3_result).
result(trial_on_rich_growthrate_ylr070c_3_result).
has_part(trial_on_rich_growthrate_ylr070c_3_result,trial_on_rich_growthrate_ylr070c_3_result_1).
has_representation(trial_on_rich_growthrate_ylr070c_3_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_ylr070c_3_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_ylr070c_3_result_1,trial_on_rich_growthrate_ylr070c_3_result_1_proc).
procedure(trial_on_rich_growthrate_ylr070c_3_result_1_proc).
has_representation(trial_on_rich_growthrate_ylr070c_3_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ylr070c_3_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_ylr070c_3_result,trial_on_rich_growthrate_ylr070c_3_result_2).
has_representation(trial_on_rich_growthrate_ylr070c_3_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_ylr070c_3_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_ylr070c_3_result_2,trial_on_rich_growthrate_ylr070c_3_result_2_proc).
procedure(trial_on_rich_growthrate_ylr070c_3_result_2_proc).
has_representation(trial_on_rich_growthrate_ylr070c_3_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ylr070c_3_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_ylr070c_4,trial_on_rich_growthrate_ylr070c_4_design).
design(trial_on_rich_growthrate_ylr070c_4_design).
has_proposition(trial_on_rich_growthrate_ylr070c_4_design,trial_on_rich_growthrate_ylr070c_4_factor).
factor(trial_on_rich_growthrate_ylr070c_4_factor).
has_representation(trial_on_rich_growthrate_ylr070c_4_factor,'presence or absence of ylr070c').
has_input(trial_on_rich_growthrate_ylr070c_4,trial_on_rich_growthrate_ylr070c_4_data).
data(trial_on_rich_growthrate_ylr070c_4_data).
has_part(trial_on_rich_growthrate_ylr070c_4_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_ylr070c_4_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_ylr070c_4_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_ylr070c_4,'jan07-trial2_expt001-plate008').
plate('jan07-trial2_expt001-plate008').
has_proposition(trial_on_rich_growthrate_ylr070c_4,trial_on_rich_growthrate_ylr070c_4_result).
result(trial_on_rich_growthrate_ylr070c_4_result).
has_part(trial_on_rich_growthrate_ylr070c_4_result,trial_on_rich_growthrate_ylr070c_4_result_1).
has_representation(trial_on_rich_growthrate_ylr070c_4_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_ylr070c_4_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_ylr070c_4_result_1,trial_on_rich_growthrate_ylr070c_4_result_1_proc).
procedure(trial_on_rich_growthrate_ylr070c_4_result_1_proc).
has_representation(trial_on_rich_growthrate_ylr070c_4_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ylr070c_4_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_ylr070c_4_result,trial_on_rich_growthrate_ylr070c_4_result_2).
has_representation(trial_on_rich_growthrate_ylr070c_4_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_ylr070c_4_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_ylr070c_4_result_2,trial_on_rich_growthrate_ylr070c_4_result_2_proc).
procedure(trial_on_rich_growthrate_ylr070c_4_result_2_proc).
has_representation(trial_on_rich_growthrate_ylr070c_4_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ylr070c_4_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_ylr070c_5,trial_on_rich_growthrate_ylr070c_5_design).
design(trial_on_rich_growthrate_ylr070c_5_design).
has_proposition(trial_on_rich_growthrate_ylr070c_5_design,trial_on_rich_growthrate_ylr070c_5_factor).
factor(trial_on_rich_growthrate_ylr070c_5_factor).
has_representation(trial_on_rich_growthrate_ylr070c_5_factor,'presence or absence of ylr070c').
has_input(trial_on_rich_growthrate_ylr070c_5,trial_on_rich_growthrate_ylr070c_5_data).
data(trial_on_rich_growthrate_ylr070c_5_data).
has_part(trial_on_rich_growthrate_ylr070c_5_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_ylr070c_5_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_ylr070c_5_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_ylr070c_5,'jan07-trial2_expt001-plate009').
plate('jan07-trial2_expt001-plate009').
has_proposition(trial_on_rich_growthrate_ylr070c_5,trial_on_rich_growthrate_ylr070c_5_result).
result(trial_on_rich_growthrate_ylr070c_5_result).
has_part(trial_on_rich_growthrate_ylr070c_5_result,trial_on_rich_growthrate_ylr070c_5_result_1).
has_representation(trial_on_rich_growthrate_ylr070c_5_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_ylr070c_5_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_ylr070c_5_result_1,trial_on_rich_growthrate_ylr070c_5_result_1_proc).
procedure(trial_on_rich_growthrate_ylr070c_5_result_1_proc).
has_representation(trial_on_rich_growthrate_ylr070c_5_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ylr070c_5_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_ylr070c_5_result,trial_on_rich_growthrate_ylr070c_5_result_2).
has_representation(trial_on_rich_growthrate_ylr070c_5_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_ylr070c_5_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_ylr070c_5_result_2,trial_on_rich_growthrate_ylr070c_5_result_2_proc).
procedure(trial_on_rich_growthrate_ylr070c_5_result_2_proc).
has_representation(trial_on_rich_growthrate_ylr070c_5_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ylr070c_5_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_ylr070c_6,trial_on_rich_growthrate_ylr070c_6_design).
design(trial_on_rich_growthrate_ylr070c_6_design).
has_proposition(trial_on_rich_growthrate_ylr070c_6_design,trial_on_rich_growthrate_ylr070c_6_factor).
factor(trial_on_rich_growthrate_ylr070c_6_factor).
has_representation(trial_on_rich_growthrate_ylr070c_6_factor,'presence or absence of ylr070c').
has_input(trial_on_rich_growthrate_ylr070c_6,trial_on_rich_growthrate_ylr070c_6_data).
data(trial_on_rich_growthrate_ylr070c_6_data).
has_part(trial_on_rich_growthrate_ylr070c_6_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_ylr070c_6_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_ylr070c_6_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_ylr070c_6,'jan07-trial2_expt001-plate010').
plate('jan07-trial2_expt001-plate010').
has_proposition(trial_on_rich_growthrate_ylr070c_6,trial_on_rich_growthrate_ylr070c_6_result).
result(trial_on_rich_growthrate_ylr070c_6_result).
has_part(trial_on_rich_growthrate_ylr070c_6_result,trial_on_rich_growthrate_ylr070c_6_result_1).
has_representation(trial_on_rich_growthrate_ylr070c_6_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_ylr070c_6_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_ylr070c_6_result_1,trial_on_rich_growthrate_ylr070c_6_result_1_proc).
procedure(trial_on_rich_growthrate_ylr070c_6_result_1_proc).
has_representation(trial_on_rich_growthrate_ylr070c_6_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ylr070c_6_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_ylr070c_6_result,trial_on_rich_growthrate_ylr070c_6_result_2).
has_representation(trial_on_rich_growthrate_ylr070c_6_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_ylr070c_6_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_ylr070c_6_result_2,trial_on_rich_growthrate_ylr070c_6_result_2_proc).
procedure(trial_on_rich_growthrate_ylr070c_6_result_2_proc).
has_representation(trial_on_rich_growthrate_ylr070c_6_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ylr070c_6_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_ylr070c,trial_on_rich_growthrate_ylr070c_results).
result(trial_on_rich_growthrate_ylr070c_results).
has_part(trial_on_rich_growthrate_ylr070c_results,trial_on_rich_growthrate_ylr070c_results_1).
has_representation(trial_on_rich_growthrate_ylr070c_results_1,'median of knockout medians missing ylr070c').
text_representation('median of knockout medians missing ylr070c').
has_proposition(trial_on_rich_growthrate_ylr070c_results_1,trial_on_rich_growthrate_ylr070c_results_1_proc).
procedure(trial_on_rich_growthrate_ylr070c_results_1_proc).
has_proposition(trial_on_rich_growthrate_ylr070c_results_1_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_rich_growthrate_ylr070c_results,trial_on_rich_growthrate_ylr070c_results_2).
has_representation(trial_on_rich_growthrate_ylr070c_results_2,'median of wild type medians').
text_representation('median of wild type medians').
has_proposition(trial_on_rich_growthrate_ylr070c_results_2,trial_on_rich_growthrate_ylr070c_results_2_proc).
procedure(trial_on_rich_growthrate_ylr070c_results_2_proc).
has_proposition(trial_on_rich_growthrate_ylr070c_results_2_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_rich_growthrate_ylr070c_results,trial_on_rich_growthrate_ylr070c_results_3).
has_representation(trial_on_rich_growthrate_ylr070c_results_3,'difference between trial_on_rich_growthrate_ylr070c_results_1 and trial_on_rich_growthrate_ylr070c_results_2').
text_representation('difference between trial_on_rich_growthrate_ylr070c_results_1 and trial_on_rich_growthrate_ylr070c_results_2').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_result).
result(study_on_rich_growthrate_result).
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_1).
has_representation(study_on_rich_growthrate_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_rich_growthrate_result_1,'results/wr_kr_growth_rate.csv').
link('results/wr_kr_growth_rate.csv').
has_proposition(study_on_rich_growthrate_result_1,study_on_rich_growthrate_result_1_proc).
procedure(study_on_rich_growthrate_result_1_proc).
has_proposition(study_on_rich_growthrate_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_2).
has_representation(study_on_rich_growthrate_result_2,'bar graph (histogram) plotting study_on_rich_growthrate_result_1').
text_representation('bar graph (histogram) plotting study_on_rich_growthrate_result_1').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate1.tiff').
link('results/kr_wr_growth_rate1.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate2.tiff').
link('results/kr_wr_growth_rate2.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/overlayed_growth_rate.tiff').
link('results/overlayed_growth_rate.tiff').
has_proposition(study_on_rich_growthrate_result_2,study_on_rich_growthrate_result_2_proc).
procedure(study_on_rich_growthrate_result_2_proc).
has_proposition(study_on_rich_growthrate_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_conclusion).
conclusion(study_on_rich_growthrate_conclusion).
has_representation(study_on_rich_growthrate_conclusion,'The knockouts have higher growth rate in rich than the wild type').
text_representation('The knockouts have higher growth rate in rich than the wild type').
has_proposition(study_on_rich_growthrate_conclusion,'obtain statistical mode of study_on_rich_growthrate_result_1').
procedure('obtain statistical mode of study_on_rich_growthrate_result_1').
text_representation('obtain statistical mode of study_on_rich_growthrate_result_1').
has_part(study_on_rich_growthrate,trial_on_rich_growthrate_ypr121w).
trial(trial_on_rich_growthrate_ypr121w).
has_agent(trial_on_rich_growthrate_ypr121w,ypr121w).
strain(ypr121w).
has_proposition(trial_on_rich_growthrate_ypr121w_1,trial_on_rich_growthrate_ypr121w_1_design).
design(trial_on_rich_growthrate_ypr121w_1_design).
has_proposition(trial_on_rich_growthrate_ypr121w_1_design,trial_on_rich_growthrate_ypr121w_1_factor).
factor(trial_on_rich_growthrate_ypr121w_1_factor).
has_representation(trial_on_rich_growthrate_ypr121w_1_factor,'presence or absence of ypr121w').
has_input(trial_on_rich_growthrate_ypr121w_1,trial_on_rich_growthrate_ypr121w_1_data).
data(trial_on_rich_growthrate_ypr121w_1_data).
has_part(trial_on_rich_growthrate_ypr121w_1_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_ypr121w_1_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_ypr121w_1_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_ypr121w_1,'feb07-trial1_expt001-plate005').
plate('feb07-trial1_expt001-plate005').
has_proposition(trial_on_rich_growthrate_ypr121w_1,trial_on_rich_growthrate_ypr121w_1_result).
result(trial_on_rich_growthrate_ypr121w_1_result).
has_part(trial_on_rich_growthrate_ypr121w_1_result,trial_on_rich_growthrate_ypr121w_1_result_1).
has_representation(trial_on_rich_growthrate_ypr121w_1_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_ypr121w_1_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_ypr121w_1_result_1,trial_on_rich_growthrate_ypr121w_1_result_1_proc).
procedure(trial_on_rich_growthrate_ypr121w_1_result_1_proc).
has_representation(trial_on_rich_growthrate_ypr121w_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ypr121w_1_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_ypr121w_1_result,trial_on_rich_growthrate_ypr121w_1_result_2).
has_representation(trial_on_rich_growthrate_ypr121w_1_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_ypr121w_1_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_ypr121w_1_result_2,trial_on_rich_growthrate_ypr121w_1_result_2_proc).
procedure(trial_on_rich_growthrate_ypr121w_1_result_2_proc).
has_representation(trial_on_rich_growthrate_ypr121w_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ypr121w_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_ypr121w,trial_on_rich_growthrate_ypr121w_results).
result(trial_on_rich_growthrate_ypr121w_results).
has_part(trial_on_rich_growthrate_ypr121w_results,trial_on_rich_growthrate_ypr121w_results_1).
has_representation(trial_on_rich_growthrate_ypr121w_results_1,'median of knockout medians missing ypr121w').
text_representation('median of knockout medians missing ypr121w').
has_proposition(trial_on_rich_growthrate_ypr121w_results_1,trial_on_rich_growthrate_ypr121w_results_1_proc).
procedure(trial_on_rich_growthrate_ypr121w_results_1_proc).
has_proposition(trial_on_rich_growthrate_ypr121w_results_1_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_rich_growthrate_ypr121w_results,trial_on_rich_growthrate_ypr121w_results_2).
has_representation(trial_on_rich_growthrate_ypr121w_results_2,'median of wild type medians').
text_representation('median of wild type medians').
has_proposition(trial_on_rich_growthrate_ypr121w_results_2,trial_on_rich_growthrate_ypr121w_results_2_proc).
procedure(trial_on_rich_growthrate_ypr121w_results_2_proc).
has_proposition(trial_on_rich_growthrate_ypr121w_results_2_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_rich_growthrate_ypr121w_results,trial_on_rich_growthrate_ypr121w_results_3).
has_representation(trial_on_rich_growthrate_ypr121w_results_3,'difference between trial_on_rich_growthrate_ypr121w_results_1 and trial_on_rich_growthrate_ypr121w_results_2').
text_representation('difference between trial_on_rich_growthrate_ypr121w_results_1 and trial_on_rich_growthrate_ypr121w_results_2').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_result).
result(study_on_rich_growthrate_result).
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_1).
has_representation(study_on_rich_growthrate_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_rich_growthrate_result_1,'results/wr_kr_growth_rate.csv').
link('results/wr_kr_growth_rate.csv').
has_proposition(study_on_rich_growthrate_result_1,study_on_rich_growthrate_result_1_proc).
procedure(study_on_rich_growthrate_result_1_proc).
has_proposition(study_on_rich_growthrate_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_2).
has_representation(study_on_rich_growthrate_result_2,'bar graph (histogram) plotting study_on_rich_growthrate_result_1').
text_representation('bar graph (histogram) plotting study_on_rich_growthrate_result_1').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate1.tiff').
link('results/kr_wr_growth_rate1.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate2.tiff').
link('results/kr_wr_growth_rate2.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/overlayed_growth_rate.tiff').
link('results/overlayed_growth_rate.tiff').
has_proposition(study_on_rich_growthrate_result_2,study_on_rich_growthrate_result_2_proc).
procedure(study_on_rich_growthrate_result_2_proc).
has_proposition(study_on_rich_growthrate_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_conclusion).
conclusion(study_on_rich_growthrate_conclusion).
has_representation(study_on_rich_growthrate_conclusion,'The knockouts have higher growth rate in rich than the wild type').
text_representation('The knockouts have higher growth rate in rich than the wild type').
has_proposition(study_on_rich_growthrate_conclusion,'obtain statistical mode of study_on_rich_growthrate_result_1').
procedure('obtain statistical mode of study_on_rich_growthrate_result_1').
text_representation('obtain statistical mode of study_on_rich_growthrate_result_1').
has_part(study_on_rich_growthrate,trial_on_rich_growthrate_ynr027w).
trial(trial_on_rich_growthrate_ynr027w).
has_agent(trial_on_rich_growthrate_ynr027w,ynr027w).
strain(ynr027w).
has_proposition(trial_on_rich_growthrate_ynr027w_1,trial_on_rich_growthrate_ynr027w_1_design).
design(trial_on_rich_growthrate_ynr027w_1_design).
has_proposition(trial_on_rich_growthrate_ynr027w_1_design,trial_on_rich_growthrate_ynr027w_1_factor).
factor(trial_on_rich_growthrate_ynr027w_1_factor).
has_representation(trial_on_rich_growthrate_ynr027w_1_factor,'presence or absence of ynr027w').
has_input(trial_on_rich_growthrate_ynr027w_1,trial_on_rich_growthrate_ynr027w_1_data).
data(trial_on_rich_growthrate_ynr027w_1_data).
has_part(trial_on_rich_growthrate_ynr027w_1_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_ynr027w_1_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_ynr027w_1_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_ynr027w_1,'jan07-trial1_expt001-plate010').
plate('jan07-trial1_expt001-plate010').
has_proposition(trial_on_rich_growthrate_ynr027w_1,trial_on_rich_growthrate_ynr027w_1_result).
result(trial_on_rich_growthrate_ynr027w_1_result).
has_part(trial_on_rich_growthrate_ynr027w_1_result,trial_on_rich_growthrate_ynr027w_1_result_1).
has_representation(trial_on_rich_growthrate_ynr027w_1_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_ynr027w_1_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_ynr027w_1_result_1,trial_on_rich_growthrate_ynr027w_1_result_1_proc).
procedure(trial_on_rich_growthrate_ynr027w_1_result_1_proc).
has_representation(trial_on_rich_growthrate_ynr027w_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ynr027w_1_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_ynr027w_1_result,trial_on_rich_growthrate_ynr027w_1_result_2).
has_representation(trial_on_rich_growthrate_ynr027w_1_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_ynr027w_1_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_ynr027w_1_result_2,trial_on_rich_growthrate_ynr027w_1_result_2_proc).
procedure(trial_on_rich_growthrate_ynr027w_1_result_2_proc).
has_representation(trial_on_rich_growthrate_ynr027w_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ynr027w_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_ynr027w_2,trial_on_rich_growthrate_ynr027w_2_design).
design(trial_on_rich_growthrate_ynr027w_2_design).
has_proposition(trial_on_rich_growthrate_ynr027w_2_design,trial_on_rich_growthrate_ynr027w_2_factor).
factor(trial_on_rich_growthrate_ynr027w_2_factor).
has_representation(trial_on_rich_growthrate_ynr027w_2_factor,'presence or absence of ynr027w').
has_input(trial_on_rich_growthrate_ynr027w_2,trial_on_rich_growthrate_ynr027w_2_data).
data(trial_on_rich_growthrate_ynr027w_2_data).
has_part(trial_on_rich_growthrate_ynr027w_2_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_ynr027w_2_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_ynr027w_2_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_ynr027w_2,'mar07-trial1_expt001-plate002').
plate('mar07-trial1_expt001-plate002').
has_proposition(trial_on_rich_growthrate_ynr027w_2,trial_on_rich_growthrate_ynr027w_2_result).
result(trial_on_rich_growthrate_ynr027w_2_result).
has_part(trial_on_rich_growthrate_ynr027w_2_result,trial_on_rich_growthrate_ynr027w_2_result_1).
has_representation(trial_on_rich_growthrate_ynr027w_2_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_ynr027w_2_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_ynr027w_2_result_1,trial_on_rich_growthrate_ynr027w_2_result_1_proc).
procedure(trial_on_rich_growthrate_ynr027w_2_result_1_proc).
has_representation(trial_on_rich_growthrate_ynr027w_2_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ynr027w_2_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_ynr027w_2_result,trial_on_rich_growthrate_ynr027w_2_result_2).
has_representation(trial_on_rich_growthrate_ynr027w_2_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_ynr027w_2_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_ynr027w_2_result_2,trial_on_rich_growthrate_ynr027w_2_result_2_proc).
procedure(trial_on_rich_growthrate_ynr027w_2_result_2_proc).
has_representation(trial_on_rich_growthrate_ynr027w_2_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ynr027w_2_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_ynr027w,trial_on_rich_growthrate_ynr027w_results).
result(trial_on_rich_growthrate_ynr027w_results).
has_part(trial_on_rich_growthrate_ynr027w_results,trial_on_rich_growthrate_ynr027w_results_1).
has_representation(trial_on_rich_growthrate_ynr027w_results_1,'median of knockout medians missing ynr027w').
text_representation('median of knockout medians missing ynr027w').
has_proposition(trial_on_rich_growthrate_ynr027w_results_1,trial_on_rich_growthrate_ynr027w_results_1_proc).
procedure(trial_on_rich_growthrate_ynr027w_results_1_proc).
has_proposition(trial_on_rich_growthrate_ynr027w_results_1_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_rich_growthrate_ynr027w_results,trial_on_rich_growthrate_ynr027w_results_2).
has_representation(trial_on_rich_growthrate_ynr027w_results_2,'median of wild type medians').
text_representation('median of wild type medians').
has_proposition(trial_on_rich_growthrate_ynr027w_results_2,trial_on_rich_growthrate_ynr027w_results_2_proc).
procedure(trial_on_rich_growthrate_ynr027w_results_2_proc).
has_proposition(trial_on_rich_growthrate_ynr027w_results_2_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_rich_growthrate_ynr027w_results,trial_on_rich_growthrate_ynr027w_results_3).
has_representation(trial_on_rich_growthrate_ynr027w_results_3,'difference between trial_on_rich_growthrate_ynr027w_results_1 and trial_on_rich_growthrate_ynr027w_results_2').
text_representation('difference between trial_on_rich_growthrate_ynr027w_results_1 and trial_on_rich_growthrate_ynr027w_results_2').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_result).
result(study_on_rich_growthrate_result).
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_1).
has_representation(study_on_rich_growthrate_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_rich_growthrate_result_1,'results/wr_kr_growth_rate.csv').
link('results/wr_kr_growth_rate.csv').
has_proposition(study_on_rich_growthrate_result_1,study_on_rich_growthrate_result_1_proc).
procedure(study_on_rich_growthrate_result_1_proc).
has_proposition(study_on_rich_growthrate_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_2).
has_representation(study_on_rich_growthrate_result_2,'bar graph (histogram) plotting study_on_rich_growthrate_result_1').
text_representation('bar graph (histogram) plotting study_on_rich_growthrate_result_1').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate1.tiff').
link('results/kr_wr_growth_rate1.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate2.tiff').
link('results/kr_wr_growth_rate2.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/overlayed_growth_rate.tiff').
link('results/overlayed_growth_rate.tiff').
has_proposition(study_on_rich_growthrate_result_2,study_on_rich_growthrate_result_2_proc).
procedure(study_on_rich_growthrate_result_2_proc).
has_proposition(study_on_rich_growthrate_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_conclusion).
conclusion(study_on_rich_growthrate_conclusion).
has_representation(study_on_rich_growthrate_conclusion,'The knockouts have higher growth rate in rich than the wild type').
text_representation('The knockouts have higher growth rate in rich than the wild type').
has_proposition(study_on_rich_growthrate_conclusion,'obtain statistical mode of study_on_rich_growthrate_result_1').
procedure('obtain statistical mode of study_on_rich_growthrate_result_1').
text_representation('obtain statistical mode of study_on_rich_growthrate_result_1').
has_part(study_on_rich_growthrate,trial_on_rich_growthrate_ygl202w).
trial(trial_on_rich_growthrate_ygl202w).
has_agent(trial_on_rich_growthrate_ygl202w,ygl202w).
strain(ygl202w).
has_proposition(trial_on_rich_growthrate_ygl202w_1,trial_on_rich_growthrate_ygl202w_1_design).
design(trial_on_rich_growthrate_ygl202w_1_design).
has_proposition(trial_on_rich_growthrate_ygl202w_1_design,trial_on_rich_growthrate_ygl202w_1_factor).
factor(trial_on_rich_growthrate_ygl202w_1_factor).
has_representation(trial_on_rich_growthrate_ygl202w_1_factor,'presence or absence of ygl202w').
has_input(trial_on_rich_growthrate_ygl202w_1,trial_on_rich_growthrate_ygl202w_1_data).
data(trial_on_rich_growthrate_ygl202w_1_data).
has_part(trial_on_rich_growthrate_ygl202w_1_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_ygl202w_1_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_ygl202w_1_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_ygl202w_1,'jan07-lyss1_expt001-plate001').
plate('jan07-lyss1_expt001-plate001').
has_proposition(trial_on_rich_growthrate_ygl202w_1,trial_on_rich_growthrate_ygl202w_1_result).
result(trial_on_rich_growthrate_ygl202w_1_result).
has_part(trial_on_rich_growthrate_ygl202w_1_result,trial_on_rich_growthrate_ygl202w_1_result_1).
has_representation(trial_on_rich_growthrate_ygl202w_1_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_ygl202w_1_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_ygl202w_1_result_1,trial_on_rich_growthrate_ygl202w_1_result_1_proc).
procedure(trial_on_rich_growthrate_ygl202w_1_result_1_proc).
has_representation(trial_on_rich_growthrate_ygl202w_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ygl202w_1_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_ygl202w_1_result,trial_on_rich_growthrate_ygl202w_1_result_2).
has_representation(trial_on_rich_growthrate_ygl202w_1_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_ygl202w_1_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_ygl202w_1_result_2,trial_on_rich_growthrate_ygl202w_1_result_2_proc).
procedure(trial_on_rich_growthrate_ygl202w_1_result_2_proc).
has_representation(trial_on_rich_growthrate_ygl202w_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ygl202w_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_ygl202w_2,trial_on_rich_growthrate_ygl202w_2_design).
design(trial_on_rich_growthrate_ygl202w_2_design).
has_proposition(trial_on_rich_growthrate_ygl202w_2_design,trial_on_rich_growthrate_ygl202w_2_factor).
factor(trial_on_rich_growthrate_ygl202w_2_factor).
has_representation(trial_on_rich_growthrate_ygl202w_2_factor,'presence or absence of ygl202w').
has_input(trial_on_rich_growthrate_ygl202w_2,trial_on_rich_growthrate_ygl202w_2_data).
data(trial_on_rich_growthrate_ygl202w_2_data).
has_part(trial_on_rich_growthrate_ygl202w_2_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_ygl202w_2_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_ygl202w_2_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_ygl202w_2,'jan07-lyss1_expt001-plate002').
plate('jan07-lyss1_expt001-plate002').
has_proposition(trial_on_rich_growthrate_ygl202w_2,trial_on_rich_growthrate_ygl202w_2_result).
result(trial_on_rich_growthrate_ygl202w_2_result).
has_part(trial_on_rich_growthrate_ygl202w_2_result,trial_on_rich_growthrate_ygl202w_2_result_1).
has_representation(trial_on_rich_growthrate_ygl202w_2_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_ygl202w_2_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_ygl202w_2_result_1,trial_on_rich_growthrate_ygl202w_2_result_1_proc).
procedure(trial_on_rich_growthrate_ygl202w_2_result_1_proc).
has_representation(trial_on_rich_growthrate_ygl202w_2_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ygl202w_2_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_ygl202w_2_result,trial_on_rich_growthrate_ygl202w_2_result_2).
has_representation(trial_on_rich_growthrate_ygl202w_2_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_ygl202w_2_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_ygl202w_2_result_2,trial_on_rich_growthrate_ygl202w_2_result_2_proc).
procedure(trial_on_rich_growthrate_ygl202w_2_result_2_proc).
has_representation(trial_on_rich_growthrate_ygl202w_2_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ygl202w_2_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_ygl202w_3,trial_on_rich_growthrate_ygl202w_3_design).
design(trial_on_rich_growthrate_ygl202w_3_design).
has_proposition(trial_on_rich_growthrate_ygl202w_3_design,trial_on_rich_growthrate_ygl202w_3_factor).
factor(trial_on_rich_growthrate_ygl202w_3_factor).
has_representation(trial_on_rich_growthrate_ygl202w_3_factor,'presence or absence of ygl202w').
has_input(trial_on_rich_growthrate_ygl202w_3,trial_on_rich_growthrate_ygl202w_3_data).
data(trial_on_rich_growthrate_ygl202w_3_data).
has_part(trial_on_rich_growthrate_ygl202w_3_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_ygl202w_3_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_ygl202w_3_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_ygl202w_3,'jan07-lyss1_expt001-plate003').
plate('jan07-lyss1_expt001-plate003').
has_proposition(trial_on_rich_growthrate_ygl202w_3,trial_on_rich_growthrate_ygl202w_3_result).
result(trial_on_rich_growthrate_ygl202w_3_result).
has_part(trial_on_rich_growthrate_ygl202w_3_result,trial_on_rich_growthrate_ygl202w_3_result_1).
has_representation(trial_on_rich_growthrate_ygl202w_3_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_ygl202w_3_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_ygl202w_3_result_1,trial_on_rich_growthrate_ygl202w_3_result_1_proc).
procedure(trial_on_rich_growthrate_ygl202w_3_result_1_proc).
has_representation(trial_on_rich_growthrate_ygl202w_3_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ygl202w_3_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_ygl202w_3_result,trial_on_rich_growthrate_ygl202w_3_result_2).
has_representation(trial_on_rich_growthrate_ygl202w_3_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_ygl202w_3_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_ygl202w_3_result_2,trial_on_rich_growthrate_ygl202w_3_result_2_proc).
procedure(trial_on_rich_growthrate_ygl202w_3_result_2_proc).
has_representation(trial_on_rich_growthrate_ygl202w_3_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ygl202w_3_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_ygl202w,trial_on_rich_growthrate_ygl202w_results).
result(trial_on_rich_growthrate_ygl202w_results).
has_part(trial_on_rich_growthrate_ygl202w_results,trial_on_rich_growthrate_ygl202w_results_1).
has_representation(trial_on_rich_growthrate_ygl202w_results_1,'median of knockout medians missing ygl202w').
text_representation('median of knockout medians missing ygl202w').
has_proposition(trial_on_rich_growthrate_ygl202w_results_1,trial_on_rich_growthrate_ygl202w_results_1_proc).
procedure(trial_on_rich_growthrate_ygl202w_results_1_proc).
has_proposition(trial_on_rich_growthrate_ygl202w_results_1_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_rich_growthrate_ygl202w_results,trial_on_rich_growthrate_ygl202w_results_2).
has_representation(trial_on_rich_growthrate_ygl202w_results_2,'median of wild type medians').
text_representation('median of wild type medians').
has_proposition(trial_on_rich_growthrate_ygl202w_results_2,trial_on_rich_growthrate_ygl202w_results_2_proc).
procedure(trial_on_rich_growthrate_ygl202w_results_2_proc).
has_proposition(trial_on_rich_growthrate_ygl202w_results_2_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_rich_growthrate_ygl202w_results,trial_on_rich_growthrate_ygl202w_results_3).
has_representation(trial_on_rich_growthrate_ygl202w_results_3,'difference between trial_on_rich_growthrate_ygl202w_results_1 and trial_on_rich_growthrate_ygl202w_results_2').
text_representation('difference between trial_on_rich_growthrate_ygl202w_results_1 and trial_on_rich_growthrate_ygl202w_results_2').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_result).
result(study_on_rich_growthrate_result).
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_1).
has_representation(study_on_rich_growthrate_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_rich_growthrate_result_1,'results/wr_kr_growth_rate.csv').
link('results/wr_kr_growth_rate.csv').
has_proposition(study_on_rich_growthrate_result_1,study_on_rich_growthrate_result_1_proc).
procedure(study_on_rich_growthrate_result_1_proc).
has_proposition(study_on_rich_growthrate_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_2).
has_representation(study_on_rich_growthrate_result_2,'bar graph (histogram) plotting study_on_rich_growthrate_result_1').
text_representation('bar graph (histogram) plotting study_on_rich_growthrate_result_1').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate1.tiff').
link('results/kr_wr_growth_rate1.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate2.tiff').
link('results/kr_wr_growth_rate2.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/overlayed_growth_rate.tiff').
link('results/overlayed_growth_rate.tiff').
has_proposition(study_on_rich_growthrate_result_2,study_on_rich_growthrate_result_2_proc).
procedure(study_on_rich_growthrate_result_2_proc).
has_proposition(study_on_rich_growthrate_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_conclusion).
conclusion(study_on_rich_growthrate_conclusion).
has_representation(study_on_rich_growthrate_conclusion,'The knockouts have higher growth rate in rich than the wild type').
text_representation('The knockouts have higher growth rate in rich than the wild type').
has_proposition(study_on_rich_growthrate_conclusion,'obtain statistical mode of study_on_rich_growthrate_result_1').
procedure('obtain statistical mode of study_on_rich_growthrate_result_1').
text_representation('obtain statistical mode of study_on_rich_growthrate_result_1').
has_part(study_on_rich_growthrate,trial_on_rich_growthrate_ykl211c).
trial(trial_on_rich_growthrate_ykl211c).
has_agent(trial_on_rich_growthrate_ykl211c,ykl211c).
strain(ykl211c).
has_proposition(trial_on_rich_growthrate_ykl211c_1,trial_on_rich_growthrate_ykl211c_1_design).
design(trial_on_rich_growthrate_ykl211c_1_design).
has_proposition(trial_on_rich_growthrate_ykl211c_1_design,trial_on_rich_growthrate_ykl211c_1_factor).
factor(trial_on_rich_growthrate_ykl211c_1_factor).
has_representation(trial_on_rich_growthrate_ykl211c_1_factor,'presence or absence of ykl211c').
has_input(trial_on_rich_growthrate_ykl211c_1,trial_on_rich_growthrate_ykl211c_1_data).
data(trial_on_rich_growthrate_ykl211c_1_data).
has_part(trial_on_rich_growthrate_ykl211c_1_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_ykl211c_1_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_ykl211c_1_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_ykl211c_1,'nature-loop3_expt001-plate002').
plate('nature-loop3_expt001-plate002').
has_proposition(trial_on_rich_growthrate_ykl211c_1,trial_on_rich_growthrate_ykl211c_1_result).
result(trial_on_rich_growthrate_ykl211c_1_result).
has_part(trial_on_rich_growthrate_ykl211c_1_result,trial_on_rich_growthrate_ykl211c_1_result_1).
has_representation(trial_on_rich_growthrate_ykl211c_1_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_ykl211c_1_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_ykl211c_1_result_1,trial_on_rich_growthrate_ykl211c_1_result_1_proc).
procedure(trial_on_rich_growthrate_ykl211c_1_result_1_proc).
has_representation(trial_on_rich_growthrate_ykl211c_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ykl211c_1_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_ykl211c_1_result,trial_on_rich_growthrate_ykl211c_1_result_2).
has_representation(trial_on_rich_growthrate_ykl211c_1_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_ykl211c_1_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_ykl211c_1_result_2,trial_on_rich_growthrate_ykl211c_1_result_2_proc).
procedure(trial_on_rich_growthrate_ykl211c_1_result_2_proc).
has_representation(trial_on_rich_growthrate_ykl211c_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ykl211c_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_ykl211c_2,trial_on_rich_growthrate_ykl211c_2_design).
design(trial_on_rich_growthrate_ykl211c_2_design).
has_proposition(trial_on_rich_growthrate_ykl211c_2_design,trial_on_rich_growthrate_ykl211c_2_factor).
factor(trial_on_rich_growthrate_ykl211c_2_factor).
has_representation(trial_on_rich_growthrate_ykl211c_2_factor,'presence or absence of ykl211c').
has_input(trial_on_rich_growthrate_ykl211c_2,trial_on_rich_growthrate_ykl211c_2_data).
data(trial_on_rich_growthrate_ykl211c_2_data).
has_part(trial_on_rich_growthrate_ykl211c_2_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_ykl211c_2_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_ykl211c_2_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_ykl211c_2,'nature-loop3_expt002-plate007').
plate('nature-loop3_expt002-plate007').
has_proposition(trial_on_rich_growthrate_ykl211c_2,trial_on_rich_growthrate_ykl211c_2_result).
result(trial_on_rich_growthrate_ykl211c_2_result).
has_part(trial_on_rich_growthrate_ykl211c_2_result,trial_on_rich_growthrate_ykl211c_2_result_1).
has_representation(trial_on_rich_growthrate_ykl211c_2_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_ykl211c_2_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_ykl211c_2_result_1,trial_on_rich_growthrate_ykl211c_2_result_1_proc).
procedure(trial_on_rich_growthrate_ykl211c_2_result_1_proc).
has_representation(trial_on_rich_growthrate_ykl211c_2_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ykl211c_2_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_ykl211c_2_result,trial_on_rich_growthrate_ykl211c_2_result_2).
has_representation(trial_on_rich_growthrate_ykl211c_2_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_ykl211c_2_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_ykl211c_2_result_2,trial_on_rich_growthrate_ykl211c_2_result_2_proc).
procedure(trial_on_rich_growthrate_ykl211c_2_result_2_proc).
has_representation(trial_on_rich_growthrate_ykl211c_2_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ykl211c_2_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_ykl211c_3,trial_on_rich_growthrate_ykl211c_3_design).
design(trial_on_rich_growthrate_ykl211c_3_design).
has_proposition(trial_on_rich_growthrate_ykl211c_3_design,trial_on_rich_growthrate_ykl211c_3_factor).
factor(trial_on_rich_growthrate_ykl211c_3_factor).
has_representation(trial_on_rich_growthrate_ykl211c_3_factor,'presence or absence of ykl211c').
has_input(trial_on_rich_growthrate_ykl211c_3,trial_on_rich_growthrate_ykl211c_3_data).
data(trial_on_rich_growthrate_ykl211c_3_data).
has_part(trial_on_rich_growthrate_ykl211c_3_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_ykl211c_3_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_ykl211c_3_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_ykl211c_3,'nature-loop3_expt003-plate002').
plate('nature-loop3_expt003-plate002').
has_proposition(trial_on_rich_growthrate_ykl211c_3,trial_on_rich_growthrate_ykl211c_3_result).
result(trial_on_rich_growthrate_ykl211c_3_result).
has_part(trial_on_rich_growthrate_ykl211c_3_result,trial_on_rich_growthrate_ykl211c_3_result_1).
has_representation(trial_on_rich_growthrate_ykl211c_3_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_ykl211c_3_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_ykl211c_3_result_1,trial_on_rich_growthrate_ykl211c_3_result_1_proc).
procedure(trial_on_rich_growthrate_ykl211c_3_result_1_proc).
has_representation(trial_on_rich_growthrate_ykl211c_3_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ykl211c_3_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_ykl211c_3_result,trial_on_rich_growthrate_ykl211c_3_result_2).
has_representation(trial_on_rich_growthrate_ykl211c_3_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_ykl211c_3_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_ykl211c_3_result_2,trial_on_rich_growthrate_ykl211c_3_result_2_proc).
procedure(trial_on_rich_growthrate_ykl211c_3_result_2_proc).
has_representation(trial_on_rich_growthrate_ykl211c_3_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ykl211c_3_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_ykl211c_4,trial_on_rich_growthrate_ykl211c_4_design).
design(trial_on_rich_growthrate_ykl211c_4_design).
has_proposition(trial_on_rich_growthrate_ykl211c_4_design,trial_on_rich_growthrate_ykl211c_4_factor).
factor(trial_on_rich_growthrate_ykl211c_4_factor).
has_representation(trial_on_rich_growthrate_ykl211c_4_factor,'presence or absence of ykl211c').
has_input(trial_on_rich_growthrate_ykl211c_4,trial_on_rich_growthrate_ykl211c_4_data).
data(trial_on_rich_growthrate_ykl211c_4_data).
has_part(trial_on_rich_growthrate_ykl211c_4_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_ykl211c_4_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_ykl211c_4_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_ykl211c_4,'nature-loop3_expt004-plate007').
plate('nature-loop3_expt004-plate007').
has_proposition(trial_on_rich_growthrate_ykl211c_4,trial_on_rich_growthrate_ykl211c_4_result).
result(trial_on_rich_growthrate_ykl211c_4_result).
has_part(trial_on_rich_growthrate_ykl211c_4_result,trial_on_rich_growthrate_ykl211c_4_result_1).
has_representation(trial_on_rich_growthrate_ykl211c_4_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_ykl211c_4_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_ykl211c_4_result_1,trial_on_rich_growthrate_ykl211c_4_result_1_proc).
procedure(trial_on_rich_growthrate_ykl211c_4_result_1_proc).
has_representation(trial_on_rich_growthrate_ykl211c_4_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ykl211c_4_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_ykl211c_4_result,trial_on_rich_growthrate_ykl211c_4_result_2).
has_representation(trial_on_rich_growthrate_ykl211c_4_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_ykl211c_4_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_ykl211c_4_result_2,trial_on_rich_growthrate_ykl211c_4_result_2_proc).
procedure(trial_on_rich_growthrate_ykl211c_4_result_2_proc).
has_representation(trial_on_rich_growthrate_ykl211c_4_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ykl211c_4_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_ykl211c_5,trial_on_rich_growthrate_ykl211c_5_design).
design(trial_on_rich_growthrate_ykl211c_5_design).
has_proposition(trial_on_rich_growthrate_ykl211c_5_design,trial_on_rich_growthrate_ykl211c_5_factor).
factor(trial_on_rich_growthrate_ykl211c_5_factor).
has_representation(trial_on_rich_growthrate_ykl211c_5_factor,'presence or absence of ykl211c').
has_input(trial_on_rich_growthrate_ykl211c_5,trial_on_rich_growthrate_ykl211c_5_data).
data(trial_on_rich_growthrate_ykl211c_5_data).
has_part(trial_on_rich_growthrate_ykl211c_5_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_ykl211c_5_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_ykl211c_5_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_ykl211c_5,'nature-loop3_expt005-plate007').
plate('nature-loop3_expt005-plate007').
has_proposition(trial_on_rich_growthrate_ykl211c_5,trial_on_rich_growthrate_ykl211c_5_result).
result(trial_on_rich_growthrate_ykl211c_5_result).
has_part(trial_on_rich_growthrate_ykl211c_5_result,trial_on_rich_growthrate_ykl211c_5_result_1).
has_representation(trial_on_rich_growthrate_ykl211c_5_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_ykl211c_5_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_ykl211c_5_result_1,trial_on_rich_growthrate_ykl211c_5_result_1_proc).
procedure(trial_on_rich_growthrate_ykl211c_5_result_1_proc).
has_representation(trial_on_rich_growthrate_ykl211c_5_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ykl211c_5_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_ykl211c_5_result,trial_on_rich_growthrate_ykl211c_5_result_2).
has_representation(trial_on_rich_growthrate_ykl211c_5_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_ykl211c_5_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_ykl211c_5_result_2,trial_on_rich_growthrate_ykl211c_5_result_2_proc).
procedure(trial_on_rich_growthrate_ykl211c_5_result_2_proc).
has_representation(trial_on_rich_growthrate_ykl211c_5_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ykl211c_5_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_ykl211c_6,trial_on_rich_growthrate_ykl211c_6_design).
design(trial_on_rich_growthrate_ykl211c_6_design).
has_proposition(trial_on_rich_growthrate_ykl211c_6_design,trial_on_rich_growthrate_ykl211c_6_factor).
factor(trial_on_rich_growthrate_ykl211c_6_factor).
has_representation(trial_on_rich_growthrate_ykl211c_6_factor,'presence or absence of ykl211c').
has_input(trial_on_rich_growthrate_ykl211c_6,trial_on_rich_growthrate_ykl211c_6_data).
data(trial_on_rich_growthrate_ykl211c_6_data).
has_part(trial_on_rich_growthrate_ykl211c_6_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_ykl211c_6_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_ykl211c_6_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_ykl211c_6,'nature-loop1_expt001-plate002').
plate('nature-loop1_expt001-plate002').
has_proposition(trial_on_rich_growthrate_ykl211c_6,trial_on_rich_growthrate_ykl211c_6_result).
result(trial_on_rich_growthrate_ykl211c_6_result).
has_part(trial_on_rich_growthrate_ykl211c_6_result,trial_on_rich_growthrate_ykl211c_6_result_1).
has_representation(trial_on_rich_growthrate_ykl211c_6_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_ykl211c_6_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_ykl211c_6_result_1,trial_on_rich_growthrate_ykl211c_6_result_1_proc).
procedure(trial_on_rich_growthrate_ykl211c_6_result_1_proc).
has_representation(trial_on_rich_growthrate_ykl211c_6_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ykl211c_6_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_ykl211c_6_result,trial_on_rich_growthrate_ykl211c_6_result_2).
has_representation(trial_on_rich_growthrate_ykl211c_6_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_ykl211c_6_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_ykl211c_6_result_2,trial_on_rich_growthrate_ykl211c_6_result_2_proc).
procedure(trial_on_rich_growthrate_ykl211c_6_result_2_proc).
has_representation(trial_on_rich_growthrate_ykl211c_6_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ykl211c_6_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_ykl211c_7,trial_on_rich_growthrate_ykl211c_7_design).
design(trial_on_rich_growthrate_ykl211c_7_design).
has_proposition(trial_on_rich_growthrate_ykl211c_7_design,trial_on_rich_growthrate_ykl211c_7_factor).
factor(trial_on_rich_growthrate_ykl211c_7_factor).
has_representation(trial_on_rich_growthrate_ykl211c_7_factor,'presence or absence of ykl211c').
has_input(trial_on_rich_growthrate_ykl211c_7,trial_on_rich_growthrate_ykl211c_7_data).
data(trial_on_rich_growthrate_ykl211c_7_data).
has_part(trial_on_rich_growthrate_ykl211c_7_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_ykl211c_7_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_ykl211c_7_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_ykl211c_7,'nature-loop2_expt001-plate006').
plate('nature-loop2_expt001-plate006').
has_proposition(trial_on_rich_growthrate_ykl211c_7,trial_on_rich_growthrate_ykl211c_7_result).
result(trial_on_rich_growthrate_ykl211c_7_result).
has_part(trial_on_rich_growthrate_ykl211c_7_result,trial_on_rich_growthrate_ykl211c_7_result_1).
has_representation(trial_on_rich_growthrate_ykl211c_7_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_ykl211c_7_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_ykl211c_7_result_1,trial_on_rich_growthrate_ykl211c_7_result_1_proc).
procedure(trial_on_rich_growthrate_ykl211c_7_result_1_proc).
has_representation(trial_on_rich_growthrate_ykl211c_7_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ykl211c_7_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_ykl211c_7_result,trial_on_rich_growthrate_ykl211c_7_result_2).
has_representation(trial_on_rich_growthrate_ykl211c_7_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_ykl211c_7_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_ykl211c_7_result_2,trial_on_rich_growthrate_ykl211c_7_result_2_proc).
procedure(trial_on_rich_growthrate_ykl211c_7_result_2_proc).
has_representation(trial_on_rich_growthrate_ykl211c_7_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ykl211c_7_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_ykl211c_8,trial_on_rich_growthrate_ykl211c_8_design).
design(trial_on_rich_growthrate_ykl211c_8_design).
has_proposition(trial_on_rich_growthrate_ykl211c_8_design,trial_on_rich_growthrate_ykl211c_8_factor).
factor(trial_on_rich_growthrate_ykl211c_8_factor).
has_representation(trial_on_rich_growthrate_ykl211c_8_factor,'presence or absence of ykl211c').
has_input(trial_on_rich_growthrate_ykl211c_8,trial_on_rich_growthrate_ykl211c_8_data).
data(trial_on_rich_growthrate_ykl211c_8_data).
has_part(trial_on_rich_growthrate_ykl211c_8_data,'48 values for growth rate of knockout on rich medium').
has_part(trial_on_rich_growthrate_ykl211c_8_data,'48 values for growth rate of wild type on rich medium').
has_proposition(trial_on_rich_growthrate_ykl211c_8_data,'../data/').
link('../data/').
located_in(trial_on_rich_growthrate_ykl211c_8,'nature-loop3_expt006-plate006').
plate('nature-loop3_expt006-plate006').
has_proposition(trial_on_rich_growthrate_ykl211c_8,trial_on_rich_growthrate_ykl211c_8_result).
result(trial_on_rich_growthrate_ykl211c_8_result).
has_part(trial_on_rich_growthrate_ykl211c_8_result,trial_on_rich_growthrate_ykl211c_8_result_1).
has_representation(trial_on_rich_growthrate_ykl211c_8_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_growthrate_ykl211c_8_result_1,'results/linear_slope_pgrowth_kmedians.txt').
link('results/linear_slope_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_growthrate_ykl211c_8_result_1,trial_on_rich_growthrate_ykl211c_8_result_1_proc).
procedure(trial_on_rich_growthrate_ykl211c_8_result_1_proc).
has_representation(trial_on_rich_growthrate_ykl211c_8_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ykl211c_8_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_rich_growthrate_ykl211c_8_result,trial_on_rich_growthrate_ykl211c_8_result_2).
has_representation(trial_on_rich_growthrate_ykl211c_8_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_growthrate_ykl211c_8_result_2,'results/linear_slope_pgrowth_wmedians.txt').
link('results/linear_slope_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_growthrate_ykl211c_8_result_2,trial_on_rich_growthrate_ykl211c_8_result_2_proc).
procedure(trial_on_rich_growthrate_ykl211c_8_result_2_proc).
has_representation(trial_on_rich_growthrate_ykl211c_8_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_growthrate_ykl211c_8_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_growthrate_ykl211c,trial_on_rich_growthrate_ykl211c_results).
result(trial_on_rich_growthrate_ykl211c_results).
has_part(trial_on_rich_growthrate_ykl211c_results,trial_on_rich_growthrate_ykl211c_results_1).
has_representation(trial_on_rich_growthrate_ykl211c_results_1,'median of knockout medians missing ykl211c').
text_representation('median of knockout medians missing ykl211c').
has_proposition(trial_on_rich_growthrate_ykl211c_results_1,trial_on_rich_growthrate_ykl211c_results_1_proc).
procedure(trial_on_rich_growthrate_ykl211c_results_1_proc).
has_proposition(trial_on_rich_growthrate_ykl211c_results_1_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_rich_growthrate_ykl211c_results,trial_on_rich_growthrate_ykl211c_results_2).
has_representation(trial_on_rich_growthrate_ykl211c_results_2,'median of wild type medians').
text_representation('median of wild type medians').
has_proposition(trial_on_rich_growthrate_ykl211c_results_2,trial_on_rich_growthrate_ykl211c_results_2_proc).
procedure(trial_on_rich_growthrate_ykl211c_results_2_proc).
has_proposition(trial_on_rich_growthrate_ykl211c_results_2_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_rich_growthrate_ykl211c_results,trial_on_rich_growthrate_ykl211c_results_3).
has_representation(trial_on_rich_growthrate_ykl211c_results_3,'difference between trial_on_rich_growthrate_ykl211c_results_1 and trial_on_rich_growthrate_ykl211c_results_2').
text_representation('difference between trial_on_rich_growthrate_ykl211c_results_1 and trial_on_rich_growthrate_ykl211c_results_2').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_result).
result(study_on_rich_growthrate_result).
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_1).
has_representation(study_on_rich_growthrate_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_rich_growthrate_result_1,'results/wr_kr_growth_rate.csv').
link('results/wr_kr_growth_rate.csv').
has_proposition(study_on_rich_growthrate_result_1,study_on_rich_growthrate_result_1_proc).
procedure(study_on_rich_growthrate_result_1_proc).
has_proposition(study_on_rich_growthrate_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_2).
has_representation(study_on_rich_growthrate_result_2,'bar graph (histogram) plotting study_on_rich_growthrate_result_1').
text_representation('bar graph (histogram) plotting study_on_rich_growthrate_result_1').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate1.tiff').
link('results/kr_wr_growth_rate1.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate2.tiff').
link('results/kr_wr_growth_rate2.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/overlayed_growth_rate.tiff').
link('results/overlayed_growth_rate.tiff').
has_proposition(study_on_rich_growthrate_result_2,study_on_rich_growthrate_result_2_proc).
procedure(study_on_rich_growthrate_result_2_proc).
has_proposition(study_on_rich_growthrate_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_conclusion).
conclusion(study_on_rich_growthrate_conclusion).
has_representation(study_on_rich_growthrate_conclusion,'The knockouts have higher growth rate in rich than the wild type').
text_representation('The knockouts have higher growth rate in rich than the wild type').
has_proposition(study_on_rich_growthrate_conclusion,'obtain statistical mode of study_on_rich_growthrate_result_1').
procedure('obtain statistical mode of study_on_rich_growthrate_result_1').
text_representation('obtain statistical mode of study_on_rich_growthrate_result_1').
has_part(study_on_rich_globalmaxod,trial_on_rich_globalmaxod_yhr163w).
trial(trial_on_rich_globalmaxod_yhr163w).
has_agent(trial_on_rich_globalmaxod_yhr163w,yhr163w).
strain(yhr163w).
has_proposition(trial_on_rich_globalmaxod_yhr163w_1,trial_on_rich_globalmaxod_yhr163w_1_design).
design(trial_on_rich_globalmaxod_yhr163w_1_design).
has_proposition(trial_on_rich_globalmaxod_yhr163w_1_design,trial_on_rich_globalmaxod_yhr163w_1_factor).
factor(trial_on_rich_globalmaxod_yhr163w_1_factor).
has_representation(trial_on_rich_globalmaxod_yhr163w_1_factor,'presence or absence of yhr163w').
has_input(trial_on_rich_globalmaxod_yhr163w_1,trial_on_rich_globalmaxod_yhr163w_1_data).
data(trial_on_rich_globalmaxod_yhr163w_1_data).
has_part(trial_on_rich_globalmaxod_yhr163w_1_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_yhr163w_1_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_yhr163w_1_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_yhr163w_1,'jan07-trial1_expt001-plate009').
plate('jan07-trial1_expt001-plate009').
has_proposition(trial_on_rich_globalmaxod_yhr163w_1,trial_on_rich_globalmaxod_yhr163w_1_result).
result(trial_on_rich_globalmaxod_yhr163w_1_result).
has_part(trial_on_rich_globalmaxod_yhr163w_1_result,trial_on_rich_globalmaxod_yhr163w_1_result_1).
has_representation(trial_on_rich_globalmaxod_yhr163w_1_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_yhr163w_1_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_yhr163w_1_result_1,trial_on_rich_globalmaxod_yhr163w_1_result_1_proc).
procedure(trial_on_rich_globalmaxod_yhr163w_1_result_1_proc).
has_representation(trial_on_rich_globalmaxod_yhr163w_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_yhr163w_1_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_yhr163w_1_result,trial_on_rich_globalmaxod_yhr163w_1_result_2).
has_representation(trial_on_rich_globalmaxod_yhr163w_1_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_yhr163w_1_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_yhr163w_1_result_2,trial_on_rich_globalmaxod_yhr163w_1_result_2_proc).
procedure(trial_on_rich_globalmaxod_yhr163w_1_result_2_proc).
has_representation(trial_on_rich_globalmaxod_yhr163w_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_yhr163w_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_yhr163w_2,trial_on_rich_globalmaxod_yhr163w_2_design).
design(trial_on_rich_globalmaxod_yhr163w_2_design).
has_proposition(trial_on_rich_globalmaxod_yhr163w_2_design,trial_on_rich_globalmaxod_yhr163w_2_factor).
factor(trial_on_rich_globalmaxod_yhr163w_2_factor).
has_representation(trial_on_rich_globalmaxod_yhr163w_2_factor,'presence or absence of yhr163w').
has_input(trial_on_rich_globalmaxod_yhr163w_2,trial_on_rich_globalmaxod_yhr163w_2_data).
data(trial_on_rich_globalmaxod_yhr163w_2_data).
has_part(trial_on_rich_globalmaxod_yhr163w_2_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_yhr163w_2_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_yhr163w_2_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_yhr163w_2,'jan07-trial2_expt001-plate001').
plate('jan07-trial2_expt001-plate001').
has_proposition(trial_on_rich_globalmaxod_yhr163w_2,trial_on_rich_globalmaxod_yhr163w_2_result).
result(trial_on_rich_globalmaxod_yhr163w_2_result).
has_part(trial_on_rich_globalmaxod_yhr163w_2_result,trial_on_rich_globalmaxod_yhr163w_2_result_1).
has_representation(trial_on_rich_globalmaxod_yhr163w_2_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_yhr163w_2_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_yhr163w_2_result_1,trial_on_rich_globalmaxod_yhr163w_2_result_1_proc).
procedure(trial_on_rich_globalmaxod_yhr163w_2_result_1_proc).
has_representation(trial_on_rich_globalmaxod_yhr163w_2_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_yhr163w_2_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_yhr163w_2_result,trial_on_rich_globalmaxod_yhr163w_2_result_2).
has_representation(trial_on_rich_globalmaxod_yhr163w_2_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_yhr163w_2_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_yhr163w_2_result_2,trial_on_rich_globalmaxod_yhr163w_2_result_2_proc).
procedure(trial_on_rich_globalmaxod_yhr163w_2_result_2_proc).
has_representation(trial_on_rich_globalmaxod_yhr163w_2_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_yhr163w_2_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_yhr163w_3,trial_on_rich_globalmaxod_yhr163w_3_design).
design(trial_on_rich_globalmaxod_yhr163w_3_design).
has_proposition(trial_on_rich_globalmaxod_yhr163w_3_design,trial_on_rich_globalmaxod_yhr163w_3_factor).
factor(trial_on_rich_globalmaxod_yhr163w_3_factor).
has_representation(trial_on_rich_globalmaxod_yhr163w_3_factor,'presence or absence of yhr163w').
has_input(trial_on_rich_globalmaxod_yhr163w_3,trial_on_rich_globalmaxod_yhr163w_3_data).
data(trial_on_rich_globalmaxod_yhr163w_3_data).
has_part(trial_on_rich_globalmaxod_yhr163w_3_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_yhr163w_3_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_yhr163w_3_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_yhr163w_3,'mar07-trial2_expt001-plate001').
plate('mar07-trial2_expt001-plate001').
has_proposition(trial_on_rich_globalmaxod_yhr163w_3,trial_on_rich_globalmaxod_yhr163w_3_result).
result(trial_on_rich_globalmaxod_yhr163w_3_result).
has_part(trial_on_rich_globalmaxod_yhr163w_3_result,trial_on_rich_globalmaxod_yhr163w_3_result_1).
has_representation(trial_on_rich_globalmaxod_yhr163w_3_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_yhr163w_3_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_yhr163w_3_result_1,trial_on_rich_globalmaxod_yhr163w_3_result_1_proc).
procedure(trial_on_rich_globalmaxod_yhr163w_3_result_1_proc).
has_representation(trial_on_rich_globalmaxod_yhr163w_3_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_yhr163w_3_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_yhr163w_3_result,trial_on_rich_globalmaxod_yhr163w_3_result_2).
has_representation(trial_on_rich_globalmaxod_yhr163w_3_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_yhr163w_3_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_yhr163w_3_result_2,trial_on_rich_globalmaxod_yhr163w_3_result_2_proc).
procedure(trial_on_rich_globalmaxod_yhr163w_3_result_2_proc).
has_representation(trial_on_rich_globalmaxod_yhr163w_3_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_yhr163w_3_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_yhr163w_4,trial_on_rich_globalmaxod_yhr163w_4_design).
design(trial_on_rich_globalmaxod_yhr163w_4_design).
has_proposition(trial_on_rich_globalmaxod_yhr163w_4_design,trial_on_rich_globalmaxod_yhr163w_4_factor).
factor(trial_on_rich_globalmaxod_yhr163w_4_factor).
has_representation(trial_on_rich_globalmaxod_yhr163w_4_factor,'presence or absence of yhr163w').
has_input(trial_on_rich_globalmaxod_yhr163w_4,trial_on_rich_globalmaxod_yhr163w_4_data).
data(trial_on_rich_globalmaxod_yhr163w_4_data).
has_part(trial_on_rich_globalmaxod_yhr163w_4_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_yhr163w_4_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_yhr163w_4_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_yhr163w_4,'mar07-trial2_expt001-plate002').
plate('mar07-trial2_expt001-plate002').
has_proposition(trial_on_rich_globalmaxod_yhr163w_4,trial_on_rich_globalmaxod_yhr163w_4_result).
result(trial_on_rich_globalmaxod_yhr163w_4_result).
has_part(trial_on_rich_globalmaxod_yhr163w_4_result,trial_on_rich_globalmaxod_yhr163w_4_result_1).
has_representation(trial_on_rich_globalmaxod_yhr163w_4_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_yhr163w_4_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_yhr163w_4_result_1,trial_on_rich_globalmaxod_yhr163w_4_result_1_proc).
procedure(trial_on_rich_globalmaxod_yhr163w_4_result_1_proc).
has_representation(trial_on_rich_globalmaxod_yhr163w_4_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_yhr163w_4_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_yhr163w_4_result,trial_on_rich_globalmaxod_yhr163w_4_result_2).
has_representation(trial_on_rich_globalmaxod_yhr163w_4_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_yhr163w_4_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_yhr163w_4_result_2,trial_on_rich_globalmaxod_yhr163w_4_result_2_proc).
procedure(trial_on_rich_globalmaxod_yhr163w_4_result_2_proc).
has_representation(trial_on_rich_globalmaxod_yhr163w_4_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_yhr163w_4_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_yhr163w_5,trial_on_rich_globalmaxod_yhr163w_5_design).
design(trial_on_rich_globalmaxod_yhr163w_5_design).
has_proposition(trial_on_rich_globalmaxod_yhr163w_5_design,trial_on_rich_globalmaxod_yhr163w_5_factor).
factor(trial_on_rich_globalmaxod_yhr163w_5_factor).
has_representation(trial_on_rich_globalmaxod_yhr163w_5_factor,'presence or absence of yhr163w').
has_input(trial_on_rich_globalmaxod_yhr163w_5,trial_on_rich_globalmaxod_yhr163w_5_data).
data(trial_on_rich_globalmaxod_yhr163w_5_data).
has_part(trial_on_rich_globalmaxod_yhr163w_5_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_yhr163w_5_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_yhr163w_5_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_yhr163w_5,'mar07-trial2_expt001-plate003').
plate('mar07-trial2_expt001-plate003').
has_proposition(trial_on_rich_globalmaxod_yhr163w_5,trial_on_rich_globalmaxod_yhr163w_5_result).
result(trial_on_rich_globalmaxod_yhr163w_5_result).
has_part(trial_on_rich_globalmaxod_yhr163w_5_result,trial_on_rich_globalmaxod_yhr163w_5_result_1).
has_representation(trial_on_rich_globalmaxod_yhr163w_5_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_yhr163w_5_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_yhr163w_5_result_1,trial_on_rich_globalmaxod_yhr163w_5_result_1_proc).
procedure(trial_on_rich_globalmaxod_yhr163w_5_result_1_proc).
has_representation(trial_on_rich_globalmaxod_yhr163w_5_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_yhr163w_5_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_yhr163w_5_result,trial_on_rich_globalmaxod_yhr163w_5_result_2).
has_representation(trial_on_rich_globalmaxod_yhr163w_5_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_yhr163w_5_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_yhr163w_5_result_2,trial_on_rich_globalmaxod_yhr163w_5_result_2_proc).
procedure(trial_on_rich_globalmaxod_yhr163w_5_result_2_proc).
has_representation(trial_on_rich_globalmaxod_yhr163w_5_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_yhr163w_5_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_yhr163w_6,trial_on_rich_globalmaxod_yhr163w_6_design).
design(trial_on_rich_globalmaxod_yhr163w_6_design).
has_proposition(trial_on_rich_globalmaxod_yhr163w_6_design,trial_on_rich_globalmaxod_yhr163w_6_factor).
factor(trial_on_rich_globalmaxod_yhr163w_6_factor).
has_representation(trial_on_rich_globalmaxod_yhr163w_6_factor,'presence or absence of yhr163w').
has_input(trial_on_rich_globalmaxod_yhr163w_6,trial_on_rich_globalmaxod_yhr163w_6_data).
data(trial_on_rich_globalmaxod_yhr163w_6_data).
has_part(trial_on_rich_globalmaxod_yhr163w_6_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_yhr163w_6_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_yhr163w_6_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_yhr163w_6,'mar07-trial2_expt001-plate004').
plate('mar07-trial2_expt001-plate004').
has_proposition(trial_on_rich_globalmaxod_yhr163w_6,trial_on_rich_globalmaxod_yhr163w_6_result).
result(trial_on_rich_globalmaxod_yhr163w_6_result).
has_part(trial_on_rich_globalmaxod_yhr163w_6_result,trial_on_rich_globalmaxod_yhr163w_6_result_1).
has_representation(trial_on_rich_globalmaxod_yhr163w_6_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_yhr163w_6_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_yhr163w_6_result_1,trial_on_rich_globalmaxod_yhr163w_6_result_1_proc).
procedure(trial_on_rich_globalmaxod_yhr163w_6_result_1_proc).
has_representation(trial_on_rich_globalmaxod_yhr163w_6_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_yhr163w_6_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_yhr163w_6_result,trial_on_rich_globalmaxod_yhr163w_6_result_2).
has_representation(trial_on_rich_globalmaxod_yhr163w_6_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_yhr163w_6_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_yhr163w_6_result_2,trial_on_rich_globalmaxod_yhr163w_6_result_2_proc).
procedure(trial_on_rich_globalmaxod_yhr163w_6_result_2_proc).
has_representation(trial_on_rich_globalmaxod_yhr163w_6_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_yhr163w_6_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_yhr163w_7,trial_on_rich_globalmaxod_yhr163w_7_design).
design(trial_on_rich_globalmaxod_yhr163w_7_design).
has_proposition(trial_on_rich_globalmaxod_yhr163w_7_design,trial_on_rich_globalmaxod_yhr163w_7_factor).
factor(trial_on_rich_globalmaxod_yhr163w_7_factor).
has_representation(trial_on_rich_globalmaxod_yhr163w_7_factor,'presence or absence of yhr163w').
has_input(trial_on_rich_globalmaxod_yhr163w_7,trial_on_rich_globalmaxod_yhr163w_7_data).
data(trial_on_rich_globalmaxod_yhr163w_7_data).
has_part(trial_on_rich_globalmaxod_yhr163w_7_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_yhr163w_7_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_yhr163w_7_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_yhr163w_7,'mar07-trial2_expt001-plate005').
plate('mar07-trial2_expt001-plate005').
has_proposition(trial_on_rich_globalmaxod_yhr163w_7,trial_on_rich_globalmaxod_yhr163w_7_result).
result(trial_on_rich_globalmaxod_yhr163w_7_result).
has_part(trial_on_rich_globalmaxod_yhr163w_7_result,trial_on_rich_globalmaxod_yhr163w_7_result_1).
has_representation(trial_on_rich_globalmaxod_yhr163w_7_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_yhr163w_7_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_yhr163w_7_result_1,trial_on_rich_globalmaxod_yhr163w_7_result_1_proc).
procedure(trial_on_rich_globalmaxod_yhr163w_7_result_1_proc).
has_representation(trial_on_rich_globalmaxod_yhr163w_7_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_yhr163w_7_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_yhr163w_7_result,trial_on_rich_globalmaxod_yhr163w_7_result_2).
has_representation(trial_on_rich_globalmaxod_yhr163w_7_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_yhr163w_7_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_yhr163w_7_result_2,trial_on_rich_globalmaxod_yhr163w_7_result_2_proc).
procedure(trial_on_rich_globalmaxod_yhr163w_7_result_2_proc).
has_representation(trial_on_rich_globalmaxod_yhr163w_7_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_yhr163w_7_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_yhr163w_8,trial_on_rich_globalmaxod_yhr163w_8_design).
design(trial_on_rich_globalmaxod_yhr163w_8_design).
has_proposition(trial_on_rich_globalmaxod_yhr163w_8_design,trial_on_rich_globalmaxod_yhr163w_8_factor).
factor(trial_on_rich_globalmaxod_yhr163w_8_factor).
has_representation(trial_on_rich_globalmaxod_yhr163w_8_factor,'presence or absence of yhr163w').
has_input(trial_on_rich_globalmaxod_yhr163w_8,trial_on_rich_globalmaxod_yhr163w_8_data).
data(trial_on_rich_globalmaxod_yhr163w_8_data).
has_part(trial_on_rich_globalmaxod_yhr163w_8_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_yhr163w_8_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_yhr163w_8_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_yhr163w_8,'mar07-trial2_expt001-plate006').
plate('mar07-trial2_expt001-plate006').
has_proposition(trial_on_rich_globalmaxod_yhr163w_8,trial_on_rich_globalmaxod_yhr163w_8_result).
result(trial_on_rich_globalmaxod_yhr163w_8_result).
has_part(trial_on_rich_globalmaxod_yhr163w_8_result,trial_on_rich_globalmaxod_yhr163w_8_result_1).
has_representation(trial_on_rich_globalmaxod_yhr163w_8_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_yhr163w_8_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_yhr163w_8_result_1,trial_on_rich_globalmaxod_yhr163w_8_result_1_proc).
procedure(trial_on_rich_globalmaxod_yhr163w_8_result_1_proc).
has_representation(trial_on_rich_globalmaxod_yhr163w_8_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_yhr163w_8_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_yhr163w_8_result,trial_on_rich_globalmaxod_yhr163w_8_result_2).
has_representation(trial_on_rich_globalmaxod_yhr163w_8_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_yhr163w_8_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_yhr163w_8_result_2,trial_on_rich_globalmaxod_yhr163w_8_result_2_proc).
procedure(trial_on_rich_globalmaxod_yhr163w_8_result_2_proc).
has_representation(trial_on_rich_globalmaxod_yhr163w_8_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_yhr163w_8_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_yhr163w,trial_on_rich_globalmaxod_yhr163w_results).
result(trial_on_rich_globalmaxod_yhr163w_results).
has_part(trial_on_rich_globalmaxod_yhr163w_results,trial_on_rich_globalmaxod_yhr163w_results_1).
has_representation(trial_on_rich_globalmaxod_yhr163w_results_1,'median of knockout medians missing yhr163w').
text_representation('median of knockout medians missing yhr163w').
has_proposition(trial_on_rich_globalmaxod_yhr163w_results_1,trial_on_rich_globalmaxod_yhr163w_results_1_proc).
procedure(trial_on_rich_globalmaxod_yhr163w_results_1_proc).
has_proposition(trial_on_rich_globalmaxod_yhr163w_results_1_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_rich_globalmaxod_yhr163w_results,trial_on_rich_globalmaxod_yhr163w_results_2).
has_representation(trial_on_rich_globalmaxod_yhr163w_results_2,'median of wild type medians').
text_representation('median of wild type medians').
has_proposition(trial_on_rich_globalmaxod_yhr163w_results_2,trial_on_rich_globalmaxod_yhr163w_results_2_proc).
procedure(trial_on_rich_globalmaxod_yhr163w_results_2_proc).
has_proposition(trial_on_rich_globalmaxod_yhr163w_results_2_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_rich_globalmaxod_yhr163w_results,trial_on_rich_globalmaxod_yhr163w_results_3).
has_representation(trial_on_rich_globalmaxod_yhr163w_results_3,'difference between trial_on_rich_globalmaxod_yhr163w_results_1 and trial_on_rich_globalmaxod_yhr163w_results_2').
text_representation('difference between trial_on_rich_globalmaxod_yhr163w_results_1 and trial_on_rich_globalmaxod_yhr163w_results_2').
has_proposition(study_on_rich_globalmaxod,study_on_rich_globalmaxod_result).
result(study_on_rich_globalmaxod_result).
has_part(study_on_rich_globalmaxod_result,study_on_rich_globalmaxod_result_1).
has_representation(study_on_rich_globalmaxod_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_rich_globalmaxod_result_1,'results/wr_kr_global_max_od.csv').
link('results/wr_kr_global_max_od.csv').
has_proposition(study_on_rich_globalmaxod_result_1,study_on_rich_globalmaxod_result_1_proc).
procedure(study_on_rich_globalmaxod_result_1_proc).
has_proposition(study_on_rich_globalmaxod_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_rich_globalmaxod_result,study_on_rich_globalmaxod_result_2).
has_representation(study_on_rich_globalmaxod_result_2,'bar graph (histogram) plotting study_on_rich_globalmaxod_result_1').
text_representation('bar graph (histogram) plotting study_on_rich_globalmaxod_result_1').
has_proposition(study_on_rich_globalmaxod_result_2,'results/overlayed_global_max_od0.8.tiff').
link('results/overlayed_global_max_od0.8.tiff').
has_proposition(study_on_rich_globalmaxod_result_2,study_on_rich_globalmaxod_result_2_proc).
procedure(study_on_rich_globalmaxod_result_2_proc).
has_proposition(study_on_rich_globalmaxod_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_rich_globalmaxod,study_on_rich_globalmaxod_conclusion).
conclusion(study_on_rich_globalmaxod_conclusion).
has_representation(study_on_rich_globalmaxod_conclusion,'The knockouts reach a lower global_max_od in rich than the wild type').
text_representation('The knockouts reach a lower global_max_od in rich than the wild type').
has_proposition(study_on_rich_globalmaxod_conclusion,'obtain statistical mode of study_on_rich_globalmaxod_result_1').
procedure('obtain statistical mode of study_on_rich_globalmaxod_result_1').
text_representation('obtain statistical mode of study_on_rich_globalmaxod_result_1').
has_part(study_on_rich_globalmaxod,trial_on_rich_globalmaxod_ydr035w).
trial(trial_on_rich_globalmaxod_ydr035w).
has_agent(trial_on_rich_globalmaxod_ydr035w,ydr035w).
strain(ydr035w).
has_proposition(trial_on_rich_globalmaxod_ydr035w_1,trial_on_rich_globalmaxod_ydr035w_1_design).
design(trial_on_rich_globalmaxod_ydr035w_1_design).
has_proposition(trial_on_rich_globalmaxod_ydr035w_1_design,trial_on_rich_globalmaxod_ydr035w_1_factor).
factor(trial_on_rich_globalmaxod_ydr035w_1_factor).
has_representation(trial_on_rich_globalmaxod_ydr035w_1_factor,'presence or absence of ydr035w').
has_input(trial_on_rich_globalmaxod_ydr035w_1,trial_on_rich_globalmaxod_ydr035w_1_data).
data(trial_on_rich_globalmaxod_ydr035w_1_data).
has_part(trial_on_rich_globalmaxod_ydr035w_1_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_ydr035w_1_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_ydr035w_1_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_ydr035w_1,'nature-loop3_expt001-plate006').
plate('nature-loop3_expt001-plate006').
has_proposition(trial_on_rich_globalmaxod_ydr035w_1,trial_on_rich_globalmaxod_ydr035w_1_result).
result(trial_on_rich_globalmaxod_ydr035w_1_result).
has_part(trial_on_rich_globalmaxod_ydr035w_1_result,trial_on_rich_globalmaxod_ydr035w_1_result_1).
has_representation(trial_on_rich_globalmaxod_ydr035w_1_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_ydr035w_1_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ydr035w_1_result_1,trial_on_rich_globalmaxod_ydr035w_1_result_1_proc).
procedure(trial_on_rich_globalmaxod_ydr035w_1_result_1_proc).
has_representation(trial_on_rich_globalmaxod_ydr035w_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ydr035w_1_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_ydr035w_1_result,trial_on_rich_globalmaxod_ydr035w_1_result_2).
has_representation(trial_on_rich_globalmaxod_ydr035w_1_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_ydr035w_1_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ydr035w_1_result_2,trial_on_rich_globalmaxod_ydr035w_1_result_2_proc).
procedure(trial_on_rich_globalmaxod_ydr035w_1_result_2_proc).
has_representation(trial_on_rich_globalmaxod_ydr035w_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ydr035w_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_ydr035w_2,trial_on_rich_globalmaxod_ydr035w_2_design).
design(trial_on_rich_globalmaxod_ydr035w_2_design).
has_proposition(trial_on_rich_globalmaxod_ydr035w_2_design,trial_on_rich_globalmaxod_ydr035w_2_factor).
factor(trial_on_rich_globalmaxod_ydr035w_2_factor).
has_representation(trial_on_rich_globalmaxod_ydr035w_2_factor,'presence or absence of ydr035w').
has_input(trial_on_rich_globalmaxod_ydr035w_2,trial_on_rich_globalmaxod_ydr035w_2_data).
data(trial_on_rich_globalmaxod_ydr035w_2_data).
has_part(trial_on_rich_globalmaxod_ydr035w_2_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_ydr035w_2_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_ydr035w_2_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_ydr035w_2,'nature-loop3_expt002-plate003').
plate('nature-loop3_expt002-plate003').
has_proposition(trial_on_rich_globalmaxod_ydr035w_2,trial_on_rich_globalmaxod_ydr035w_2_result).
result(trial_on_rich_globalmaxod_ydr035w_2_result).
has_part(trial_on_rich_globalmaxod_ydr035w_2_result,trial_on_rich_globalmaxod_ydr035w_2_result_1).
has_representation(trial_on_rich_globalmaxod_ydr035w_2_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_ydr035w_2_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ydr035w_2_result_1,trial_on_rich_globalmaxod_ydr035w_2_result_1_proc).
procedure(trial_on_rich_globalmaxod_ydr035w_2_result_1_proc).
has_representation(trial_on_rich_globalmaxod_ydr035w_2_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ydr035w_2_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_ydr035w_2_result,trial_on_rich_globalmaxod_ydr035w_2_result_2).
has_representation(trial_on_rich_globalmaxod_ydr035w_2_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_ydr035w_2_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ydr035w_2_result_2,trial_on_rich_globalmaxod_ydr035w_2_result_2_proc).
procedure(trial_on_rich_globalmaxod_ydr035w_2_result_2_proc).
has_representation(trial_on_rich_globalmaxod_ydr035w_2_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ydr035w_2_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_ydr035w_3,trial_on_rich_globalmaxod_ydr035w_3_design).
design(trial_on_rich_globalmaxod_ydr035w_3_design).
has_proposition(trial_on_rich_globalmaxod_ydr035w_3_design,trial_on_rich_globalmaxod_ydr035w_3_factor).
factor(trial_on_rich_globalmaxod_ydr035w_3_factor).
has_representation(trial_on_rich_globalmaxod_ydr035w_3_factor,'presence or absence of ydr035w').
has_input(trial_on_rich_globalmaxod_ydr035w_3,trial_on_rich_globalmaxod_ydr035w_3_data).
data(trial_on_rich_globalmaxod_ydr035w_3_data).
has_part(trial_on_rich_globalmaxod_ydr035w_3_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_ydr035w_3_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_ydr035w_3_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_ydr035w_3,'nature-loop3_expt003-plate006').
plate('nature-loop3_expt003-plate006').
has_proposition(trial_on_rich_globalmaxod_ydr035w_3,trial_on_rich_globalmaxod_ydr035w_3_result).
result(trial_on_rich_globalmaxod_ydr035w_3_result).
has_part(trial_on_rich_globalmaxod_ydr035w_3_result,trial_on_rich_globalmaxod_ydr035w_3_result_1).
has_representation(trial_on_rich_globalmaxod_ydr035w_3_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_ydr035w_3_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ydr035w_3_result_1,trial_on_rich_globalmaxod_ydr035w_3_result_1_proc).
procedure(trial_on_rich_globalmaxod_ydr035w_3_result_1_proc).
has_representation(trial_on_rich_globalmaxod_ydr035w_3_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ydr035w_3_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_ydr035w_3_result,trial_on_rich_globalmaxod_ydr035w_3_result_2).
has_representation(trial_on_rich_globalmaxod_ydr035w_3_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_ydr035w_3_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ydr035w_3_result_2,trial_on_rich_globalmaxod_ydr035w_3_result_2_proc).
procedure(trial_on_rich_globalmaxod_ydr035w_3_result_2_proc).
has_representation(trial_on_rich_globalmaxod_ydr035w_3_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ydr035w_3_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_ydr035w_4,trial_on_rich_globalmaxod_ydr035w_4_design).
design(trial_on_rich_globalmaxod_ydr035w_4_design).
has_proposition(trial_on_rich_globalmaxod_ydr035w_4_design,trial_on_rich_globalmaxod_ydr035w_4_factor).
factor(trial_on_rich_globalmaxod_ydr035w_4_factor).
has_representation(trial_on_rich_globalmaxod_ydr035w_4_factor,'presence or absence of ydr035w').
has_input(trial_on_rich_globalmaxod_ydr035w_4,trial_on_rich_globalmaxod_ydr035w_4_data).
data(trial_on_rich_globalmaxod_ydr035w_4_data).
has_part(trial_on_rich_globalmaxod_ydr035w_4_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_ydr035w_4_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_ydr035w_4_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_ydr035w_4,'nature-loop3_expt004-plate003').
plate('nature-loop3_expt004-plate003').
has_proposition(trial_on_rich_globalmaxod_ydr035w_4,trial_on_rich_globalmaxod_ydr035w_4_result).
result(trial_on_rich_globalmaxod_ydr035w_4_result).
has_part(trial_on_rich_globalmaxod_ydr035w_4_result,trial_on_rich_globalmaxod_ydr035w_4_result_1).
has_representation(trial_on_rich_globalmaxod_ydr035w_4_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_ydr035w_4_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ydr035w_4_result_1,trial_on_rich_globalmaxod_ydr035w_4_result_1_proc).
procedure(trial_on_rich_globalmaxod_ydr035w_4_result_1_proc).
has_representation(trial_on_rich_globalmaxod_ydr035w_4_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ydr035w_4_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_ydr035w_4_result,trial_on_rich_globalmaxod_ydr035w_4_result_2).
has_representation(trial_on_rich_globalmaxod_ydr035w_4_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_ydr035w_4_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ydr035w_4_result_2,trial_on_rich_globalmaxod_ydr035w_4_result_2_proc).
procedure(trial_on_rich_globalmaxod_ydr035w_4_result_2_proc).
has_representation(trial_on_rich_globalmaxod_ydr035w_4_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ydr035w_4_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_ydr035w_5,trial_on_rich_globalmaxod_ydr035w_5_design).
design(trial_on_rich_globalmaxod_ydr035w_5_design).
has_proposition(trial_on_rich_globalmaxod_ydr035w_5_design,trial_on_rich_globalmaxod_ydr035w_5_factor).
factor(trial_on_rich_globalmaxod_ydr035w_5_factor).
has_representation(trial_on_rich_globalmaxod_ydr035w_5_factor,'presence or absence of ydr035w').
has_input(trial_on_rich_globalmaxod_ydr035w_5,trial_on_rich_globalmaxod_ydr035w_5_data).
data(trial_on_rich_globalmaxod_ydr035w_5_data).
has_part(trial_on_rich_globalmaxod_ydr035w_5_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_ydr035w_5_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_ydr035w_5_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_ydr035w_5,'nature-loop3_expt005-plate003').
plate('nature-loop3_expt005-plate003').
has_proposition(trial_on_rich_globalmaxod_ydr035w_5,trial_on_rich_globalmaxod_ydr035w_5_result).
result(trial_on_rich_globalmaxod_ydr035w_5_result).
has_part(trial_on_rich_globalmaxod_ydr035w_5_result,trial_on_rich_globalmaxod_ydr035w_5_result_1).
has_representation(trial_on_rich_globalmaxod_ydr035w_5_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_ydr035w_5_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ydr035w_5_result_1,trial_on_rich_globalmaxod_ydr035w_5_result_1_proc).
procedure(trial_on_rich_globalmaxod_ydr035w_5_result_1_proc).
has_representation(trial_on_rich_globalmaxod_ydr035w_5_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ydr035w_5_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_ydr035w_5_result,trial_on_rich_globalmaxod_ydr035w_5_result_2).
has_representation(trial_on_rich_globalmaxod_ydr035w_5_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_ydr035w_5_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ydr035w_5_result_2,trial_on_rich_globalmaxod_ydr035w_5_result_2_proc).
procedure(trial_on_rich_globalmaxod_ydr035w_5_result_2_proc).
has_representation(trial_on_rich_globalmaxod_ydr035w_5_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ydr035w_5_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_ydr035w_6,trial_on_rich_globalmaxod_ydr035w_6_design).
design(trial_on_rich_globalmaxod_ydr035w_6_design).
has_proposition(trial_on_rich_globalmaxod_ydr035w_6_design,trial_on_rich_globalmaxod_ydr035w_6_factor).
factor(trial_on_rich_globalmaxod_ydr035w_6_factor).
has_representation(trial_on_rich_globalmaxod_ydr035w_6_factor,'presence or absence of ydr035w').
has_input(trial_on_rich_globalmaxod_ydr035w_6,trial_on_rich_globalmaxod_ydr035w_6_data).
data(trial_on_rich_globalmaxod_ydr035w_6_data).
has_part(trial_on_rich_globalmaxod_ydr035w_6_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_ydr035w_6_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_ydr035w_6_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_ydr035w_6,'nature-loop1_expt001-plate006').
plate('nature-loop1_expt001-plate006').
has_proposition(trial_on_rich_globalmaxod_ydr035w_6,trial_on_rich_globalmaxod_ydr035w_6_result).
result(trial_on_rich_globalmaxod_ydr035w_6_result).
has_part(trial_on_rich_globalmaxod_ydr035w_6_result,trial_on_rich_globalmaxod_ydr035w_6_result_1).
has_representation(trial_on_rich_globalmaxod_ydr035w_6_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_ydr035w_6_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ydr035w_6_result_1,trial_on_rich_globalmaxod_ydr035w_6_result_1_proc).
procedure(trial_on_rich_globalmaxod_ydr035w_6_result_1_proc).
has_representation(trial_on_rich_globalmaxod_ydr035w_6_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ydr035w_6_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_ydr035w_6_result,trial_on_rich_globalmaxod_ydr035w_6_result_2).
has_representation(trial_on_rich_globalmaxod_ydr035w_6_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_ydr035w_6_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ydr035w_6_result_2,trial_on_rich_globalmaxod_ydr035w_6_result_2_proc).
procedure(trial_on_rich_globalmaxod_ydr035w_6_result_2_proc).
has_representation(trial_on_rich_globalmaxod_ydr035w_6_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ydr035w_6_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_ydr035w_7,trial_on_rich_globalmaxod_ydr035w_7_design).
design(trial_on_rich_globalmaxod_ydr035w_7_design).
has_proposition(trial_on_rich_globalmaxod_ydr035w_7_design,trial_on_rich_globalmaxod_ydr035w_7_factor).
factor(trial_on_rich_globalmaxod_ydr035w_7_factor).
has_representation(trial_on_rich_globalmaxod_ydr035w_7_factor,'presence or absence of ydr035w').
has_input(trial_on_rich_globalmaxod_ydr035w_7,trial_on_rich_globalmaxod_ydr035w_7_data).
data(trial_on_rich_globalmaxod_ydr035w_7_data).
has_part(trial_on_rich_globalmaxod_ydr035w_7_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_ydr035w_7_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_ydr035w_7_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_ydr035w_7,'nature-loop2_expt001-plate002').
plate('nature-loop2_expt001-plate002').
has_proposition(trial_on_rich_globalmaxod_ydr035w_7,trial_on_rich_globalmaxod_ydr035w_7_result).
result(trial_on_rich_globalmaxod_ydr035w_7_result).
has_part(trial_on_rich_globalmaxod_ydr035w_7_result,trial_on_rich_globalmaxod_ydr035w_7_result_1).
has_representation(trial_on_rich_globalmaxod_ydr035w_7_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_ydr035w_7_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ydr035w_7_result_1,trial_on_rich_globalmaxod_ydr035w_7_result_1_proc).
procedure(trial_on_rich_globalmaxod_ydr035w_7_result_1_proc).
has_representation(trial_on_rich_globalmaxod_ydr035w_7_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ydr035w_7_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_ydr035w_7_result,trial_on_rich_globalmaxod_ydr035w_7_result_2).
has_representation(trial_on_rich_globalmaxod_ydr035w_7_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_ydr035w_7_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ydr035w_7_result_2,trial_on_rich_globalmaxod_ydr035w_7_result_2_proc).
procedure(trial_on_rich_globalmaxod_ydr035w_7_result_2_proc).
has_representation(trial_on_rich_globalmaxod_ydr035w_7_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ydr035w_7_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_ydr035w_8,trial_on_rich_globalmaxod_ydr035w_8_design).
design(trial_on_rich_globalmaxod_ydr035w_8_design).
has_proposition(trial_on_rich_globalmaxod_ydr035w_8_design,trial_on_rich_globalmaxod_ydr035w_8_factor).
factor(trial_on_rich_globalmaxod_ydr035w_8_factor).
has_representation(trial_on_rich_globalmaxod_ydr035w_8_factor,'presence or absence of ydr035w').
has_input(trial_on_rich_globalmaxod_ydr035w_8,trial_on_rich_globalmaxod_ydr035w_8_data).
data(trial_on_rich_globalmaxod_ydr035w_8_data).
has_part(trial_on_rich_globalmaxod_ydr035w_8_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_ydr035w_8_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_ydr035w_8_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_ydr035w_8,'nature-loop2_expt001-plate009').
plate('nature-loop2_expt001-plate009').
has_proposition(trial_on_rich_globalmaxod_ydr035w_8,trial_on_rich_globalmaxod_ydr035w_8_result).
result(trial_on_rich_globalmaxod_ydr035w_8_result).
has_part(trial_on_rich_globalmaxod_ydr035w_8_result,trial_on_rich_globalmaxod_ydr035w_8_result_1).
has_representation(trial_on_rich_globalmaxod_ydr035w_8_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_ydr035w_8_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ydr035w_8_result_1,trial_on_rich_globalmaxod_ydr035w_8_result_1_proc).
procedure(trial_on_rich_globalmaxod_ydr035w_8_result_1_proc).
has_representation(trial_on_rich_globalmaxod_ydr035w_8_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ydr035w_8_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_ydr035w_8_result,trial_on_rich_globalmaxod_ydr035w_8_result_2).
has_representation(trial_on_rich_globalmaxod_ydr035w_8_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_ydr035w_8_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ydr035w_8_result_2,trial_on_rich_globalmaxod_ydr035w_8_result_2_proc).
procedure(trial_on_rich_globalmaxod_ydr035w_8_result_2_proc).
has_representation(trial_on_rich_globalmaxod_ydr035w_8_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ydr035w_8_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_ydr035w_9,trial_on_rich_globalmaxod_ydr035w_9_design).
design(trial_on_rich_globalmaxod_ydr035w_9_design).
has_proposition(trial_on_rich_globalmaxod_ydr035w_9_design,trial_on_rich_globalmaxod_ydr035w_9_factor).
factor(trial_on_rich_globalmaxod_ydr035w_9_factor).
has_representation(trial_on_rich_globalmaxod_ydr035w_9_factor,'presence or absence of ydr035w').
has_input(trial_on_rich_globalmaxod_ydr035w_9,trial_on_rich_globalmaxod_ydr035w_9_data).
data(trial_on_rich_globalmaxod_ydr035w_9_data).
has_part(trial_on_rich_globalmaxod_ydr035w_9_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_ydr035w_9_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_ydr035w_9_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_ydr035w_9,'nature-loop3_expt006-plate002').
plate('nature-loop3_expt006-plate002').
has_proposition(trial_on_rich_globalmaxod_ydr035w_9,trial_on_rich_globalmaxod_ydr035w_9_result).
result(trial_on_rich_globalmaxod_ydr035w_9_result).
has_part(trial_on_rich_globalmaxod_ydr035w_9_result,trial_on_rich_globalmaxod_ydr035w_9_result_1).
has_representation(trial_on_rich_globalmaxod_ydr035w_9_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_ydr035w_9_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ydr035w_9_result_1,trial_on_rich_globalmaxod_ydr035w_9_result_1_proc).
procedure(trial_on_rich_globalmaxod_ydr035w_9_result_1_proc).
has_representation(trial_on_rich_globalmaxod_ydr035w_9_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ydr035w_9_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_ydr035w_9_result,trial_on_rich_globalmaxod_ydr035w_9_result_2).
has_representation(trial_on_rich_globalmaxod_ydr035w_9_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_ydr035w_9_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ydr035w_9_result_2,trial_on_rich_globalmaxod_ydr035w_9_result_2_proc).
procedure(trial_on_rich_globalmaxod_ydr035w_9_result_2_proc).
has_representation(trial_on_rich_globalmaxod_ydr035w_9_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ydr035w_9_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_ydr035w,trial_on_rich_globalmaxod_ydr035w_results).
result(trial_on_rich_globalmaxod_ydr035w_results).
has_part(trial_on_rich_globalmaxod_ydr035w_results,trial_on_rich_globalmaxod_ydr035w_results_1).
has_representation(trial_on_rich_globalmaxod_ydr035w_results_1,'median of knockout medians missing ydr035w').
text_representation('median of knockout medians missing ydr035w').
has_proposition(trial_on_rich_globalmaxod_ydr035w_results_1,trial_on_rich_globalmaxod_ydr035w_results_1_proc).
procedure(trial_on_rich_globalmaxod_ydr035w_results_1_proc).
has_proposition(trial_on_rich_globalmaxod_ydr035w_results_1_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_rich_globalmaxod_ydr035w_results,trial_on_rich_globalmaxod_ydr035w_results_2).
has_representation(trial_on_rich_globalmaxod_ydr035w_results_2,'median of wild type medians').
text_representation('median of wild type medians').
has_proposition(trial_on_rich_globalmaxod_ydr035w_results_2,trial_on_rich_globalmaxod_ydr035w_results_2_proc).
procedure(trial_on_rich_globalmaxod_ydr035w_results_2_proc).
has_proposition(trial_on_rich_globalmaxod_ydr035w_results_2_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_rich_globalmaxod_ydr035w_results,trial_on_rich_globalmaxod_ydr035w_results_3).
has_representation(trial_on_rich_globalmaxod_ydr035w_results_3,'difference between trial_on_rich_globalmaxod_ydr035w_results_1 and trial_on_rich_globalmaxod_ydr035w_results_2').
text_representation('difference between trial_on_rich_globalmaxod_ydr035w_results_1 and trial_on_rich_globalmaxod_ydr035w_results_2').
has_proposition(study_on_rich_globalmaxod,study_on_rich_globalmaxod_result).
result(study_on_rich_globalmaxod_result).
has_part(study_on_rich_globalmaxod_result,study_on_rich_globalmaxod_result_1).
has_representation(study_on_rich_globalmaxod_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_rich_globalmaxod_result_1,'results/wr_kr_global_max_od.csv').
link('results/wr_kr_global_max_od.csv').
has_proposition(study_on_rich_globalmaxod_result_1,study_on_rich_globalmaxod_result_1_proc).
procedure(study_on_rich_globalmaxod_result_1_proc).
has_proposition(study_on_rich_globalmaxod_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_rich_globalmaxod_result,study_on_rich_globalmaxod_result_2).
has_representation(study_on_rich_globalmaxod_result_2,'bar graph (histogram) plotting study_on_rich_globalmaxod_result_1').
text_representation('bar graph (histogram) plotting study_on_rich_globalmaxod_result_1').
has_proposition(study_on_rich_globalmaxod_result_2,'results/overlayed_global_max_od0.8.tiff').
link('results/overlayed_global_max_od0.8.tiff').
has_proposition(study_on_rich_globalmaxod_result_2,study_on_rich_globalmaxod_result_2_proc).
procedure(study_on_rich_globalmaxod_result_2_proc).
has_proposition(study_on_rich_globalmaxod_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_rich_globalmaxod,study_on_rich_globalmaxod_conclusion).
conclusion(study_on_rich_globalmaxod_conclusion).
has_representation(study_on_rich_globalmaxod_conclusion,'The knockouts reach a lower global_max_od in rich than the wild type').
text_representation('The knockouts reach a lower global_max_od in rich than the wild type').
has_proposition(study_on_rich_globalmaxod_conclusion,'obtain statistical mode of study_on_rich_globalmaxod_result_1').
procedure('obtain statistical mode of study_on_rich_globalmaxod_result_1').
text_representation('obtain statistical mode of study_on_rich_globalmaxod_result_1').
has_part(study_on_rich_globalmaxod,trial_on_rich_globalmaxod_ygr248w).
trial(trial_on_rich_globalmaxod_ygr248w).
has_agent(trial_on_rich_globalmaxod_ygr248w,ygr248w).
strain(ygr248w).
has_proposition(trial_on_rich_globalmaxod_ygr248w_1,trial_on_rich_globalmaxod_ygr248w_1_design).
design(trial_on_rich_globalmaxod_ygr248w_1_design).
has_proposition(trial_on_rich_globalmaxod_ygr248w_1_design,trial_on_rich_globalmaxod_ygr248w_1_factor).
factor(trial_on_rich_globalmaxod_ygr248w_1_factor).
has_representation(trial_on_rich_globalmaxod_ygr248w_1_factor,'presence or absence of ygr248w').
has_input(trial_on_rich_globalmaxod_ygr248w_1,trial_on_rich_globalmaxod_ygr248w_1_data).
data(trial_on_rich_globalmaxod_ygr248w_1_data).
has_part(trial_on_rich_globalmaxod_ygr248w_1_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_ygr248w_1_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_ygr248w_1_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_ygr248w_1,'feb07-trial1_expt001-plate008').
plate('feb07-trial1_expt001-plate008').
has_proposition(trial_on_rich_globalmaxod_ygr248w_1,trial_on_rich_globalmaxod_ygr248w_1_result).
result(trial_on_rich_globalmaxod_ygr248w_1_result).
has_part(trial_on_rich_globalmaxod_ygr248w_1_result,trial_on_rich_globalmaxod_ygr248w_1_result_1).
has_representation(trial_on_rich_globalmaxod_ygr248w_1_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_ygr248w_1_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ygr248w_1_result_1,trial_on_rich_globalmaxod_ygr248w_1_result_1_proc).
procedure(trial_on_rich_globalmaxod_ygr248w_1_result_1_proc).
has_representation(trial_on_rich_globalmaxod_ygr248w_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ygr248w_1_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_ygr248w_1_result,trial_on_rich_globalmaxod_ygr248w_1_result_2).
has_representation(trial_on_rich_globalmaxod_ygr248w_1_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_ygr248w_1_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ygr248w_1_result_2,trial_on_rich_globalmaxod_ygr248w_1_result_2_proc).
procedure(trial_on_rich_globalmaxod_ygr248w_1_result_2_proc).
has_representation(trial_on_rich_globalmaxod_ygr248w_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ygr248w_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_ygr248w_2,trial_on_rich_globalmaxod_ygr248w_2_design).
design(trial_on_rich_globalmaxod_ygr248w_2_design).
has_proposition(trial_on_rich_globalmaxod_ygr248w_2_design,trial_on_rich_globalmaxod_ygr248w_2_factor).
factor(trial_on_rich_globalmaxod_ygr248w_2_factor).
has_representation(trial_on_rich_globalmaxod_ygr248w_2_factor,'presence or absence of ygr248w').
has_input(trial_on_rich_globalmaxod_ygr248w_2,trial_on_rich_globalmaxod_ygr248w_2_data).
data(trial_on_rich_globalmaxod_ygr248w_2_data).
has_part(trial_on_rich_globalmaxod_ygr248w_2_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_ygr248w_2_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_ygr248w_2_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_ygr248w_2,'feb07-trial1_expt001-plate009').
plate('feb07-trial1_expt001-plate009').
has_proposition(trial_on_rich_globalmaxod_ygr248w_2,trial_on_rich_globalmaxod_ygr248w_2_result).
result(trial_on_rich_globalmaxod_ygr248w_2_result).
has_part(trial_on_rich_globalmaxod_ygr248w_2_result,trial_on_rich_globalmaxod_ygr248w_2_result_1).
has_representation(trial_on_rich_globalmaxod_ygr248w_2_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_ygr248w_2_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ygr248w_2_result_1,trial_on_rich_globalmaxod_ygr248w_2_result_1_proc).
procedure(trial_on_rich_globalmaxod_ygr248w_2_result_1_proc).
has_representation(trial_on_rich_globalmaxod_ygr248w_2_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ygr248w_2_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_ygr248w_2_result,trial_on_rich_globalmaxod_ygr248w_2_result_2).
has_representation(trial_on_rich_globalmaxod_ygr248w_2_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_ygr248w_2_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ygr248w_2_result_2,trial_on_rich_globalmaxod_ygr248w_2_result_2_proc).
procedure(trial_on_rich_globalmaxod_ygr248w_2_result_2_proc).
has_representation(trial_on_rich_globalmaxod_ygr248w_2_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ygr248w_2_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_ygr248w,trial_on_rich_globalmaxod_ygr248w_results).
result(trial_on_rich_globalmaxod_ygr248w_results).
has_part(trial_on_rich_globalmaxod_ygr248w_results,trial_on_rich_globalmaxod_ygr248w_results_1).
has_representation(trial_on_rich_globalmaxod_ygr248w_results_1,'median of knockout medians missing ygr248w').
text_representation('median of knockout medians missing ygr248w').
has_proposition(trial_on_rich_globalmaxod_ygr248w_results_1,trial_on_rich_globalmaxod_ygr248w_results_1_proc).
procedure(trial_on_rich_globalmaxod_ygr248w_results_1_proc).
has_proposition(trial_on_rich_globalmaxod_ygr248w_results_1_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_rich_globalmaxod_ygr248w_results,trial_on_rich_globalmaxod_ygr248w_results_2).
has_representation(trial_on_rich_globalmaxod_ygr248w_results_2,'median of wild type medians').
text_representation('median of wild type medians').
has_proposition(trial_on_rich_globalmaxod_ygr248w_results_2,trial_on_rich_globalmaxod_ygr248w_results_2_proc).
procedure(trial_on_rich_globalmaxod_ygr248w_results_2_proc).
has_proposition(trial_on_rich_globalmaxod_ygr248w_results_2_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_rich_globalmaxod_ygr248w_results,trial_on_rich_globalmaxod_ygr248w_results_3).
has_representation(trial_on_rich_globalmaxod_ygr248w_results_3,'difference between trial_on_rich_globalmaxod_ygr248w_results_1 and trial_on_rich_globalmaxod_ygr248w_results_2').
text_representation('difference between trial_on_rich_globalmaxod_ygr248w_results_1 and trial_on_rich_globalmaxod_ygr248w_results_2').
has_proposition(study_on_rich_globalmaxod,study_on_rich_globalmaxod_result).
result(study_on_rich_globalmaxod_result).
has_part(study_on_rich_globalmaxod_result,study_on_rich_globalmaxod_result_1).
has_representation(study_on_rich_globalmaxod_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_rich_globalmaxod_result_1,'results/wr_kr_global_max_od.csv').
link('results/wr_kr_global_max_od.csv').
has_proposition(study_on_rich_globalmaxod_result_1,study_on_rich_globalmaxod_result_1_proc).
procedure(study_on_rich_globalmaxod_result_1_proc).
has_proposition(study_on_rich_globalmaxod_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_rich_globalmaxod_result,study_on_rich_globalmaxod_result_2).
has_representation(study_on_rich_globalmaxod_result_2,'bar graph (histogram) plotting study_on_rich_globalmaxod_result_1').
text_representation('bar graph (histogram) plotting study_on_rich_globalmaxod_result_1').
has_proposition(study_on_rich_globalmaxod_result_2,'results/overlayed_global_max_od0.8.tiff').
link('results/overlayed_global_max_od0.8.tiff').
has_proposition(study_on_rich_globalmaxod_result_2,study_on_rich_globalmaxod_result_2_proc).
procedure(study_on_rich_globalmaxod_result_2_proc).
has_proposition(study_on_rich_globalmaxod_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_rich_globalmaxod,study_on_rich_globalmaxod_conclusion).
conclusion(study_on_rich_globalmaxod_conclusion).
has_representation(study_on_rich_globalmaxod_conclusion,'The knockouts reach a lower global_max_od in rich than the wild type').
text_representation('The knockouts reach a lower global_max_od in rich than the wild type').
has_proposition(study_on_rich_globalmaxod_conclusion,'obtain statistical mode of study_on_rich_globalmaxod_result_1').
procedure('obtain statistical mode of study_on_rich_globalmaxod_result_1').
text_representation('obtain statistical mode of study_on_rich_globalmaxod_result_1').
has_part(study_on_rich_globalmaxod,trial_on_rich_globalmaxod_ymr020w).
trial(trial_on_rich_globalmaxod_ymr020w).
has_agent(trial_on_rich_globalmaxod_ymr020w,ymr020w).
strain(ymr020w).
has_proposition(trial_on_rich_globalmaxod_ymr020w_1,trial_on_rich_globalmaxod_ymr020w_1_design).
design(trial_on_rich_globalmaxod_ymr020w_1_design).
has_proposition(trial_on_rich_globalmaxod_ymr020w_1_design,trial_on_rich_globalmaxod_ymr020w_1_factor).
factor(trial_on_rich_globalmaxod_ymr020w_1_factor).
has_representation(trial_on_rich_globalmaxod_ymr020w_1_factor,'presence or absence of ymr020w').
has_input(trial_on_rich_globalmaxod_ymr020w_1,trial_on_rich_globalmaxod_ymr020w_1_data).
data(trial_on_rich_globalmaxod_ymr020w_1_data).
has_part(trial_on_rich_globalmaxod_ymr020w_1_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_ymr020w_1_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_ymr020w_1_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_ymr020w_1,'mar07-trial4_expt1-plate003').
plate('mar07-trial4_expt1-plate003').
has_proposition(trial_on_rich_globalmaxod_ymr020w_1,trial_on_rich_globalmaxod_ymr020w_1_result).
result(trial_on_rich_globalmaxod_ymr020w_1_result).
has_part(trial_on_rich_globalmaxod_ymr020w_1_result,trial_on_rich_globalmaxod_ymr020w_1_result_1).
has_representation(trial_on_rich_globalmaxod_ymr020w_1_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_ymr020w_1_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ymr020w_1_result_1,trial_on_rich_globalmaxod_ymr020w_1_result_1_proc).
procedure(trial_on_rich_globalmaxod_ymr020w_1_result_1_proc).
has_representation(trial_on_rich_globalmaxod_ymr020w_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ymr020w_1_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_ymr020w_1_result,trial_on_rich_globalmaxod_ymr020w_1_result_2).
has_representation(trial_on_rich_globalmaxod_ymr020w_1_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_ymr020w_1_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ymr020w_1_result_2,trial_on_rich_globalmaxod_ymr020w_1_result_2_proc).
procedure(trial_on_rich_globalmaxod_ymr020w_1_result_2_proc).
has_representation(trial_on_rich_globalmaxod_ymr020w_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ymr020w_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_ymr020w_2,trial_on_rich_globalmaxod_ymr020w_2_design).
design(trial_on_rich_globalmaxod_ymr020w_2_design).
has_proposition(trial_on_rich_globalmaxod_ymr020w_2_design,trial_on_rich_globalmaxod_ymr020w_2_factor).
factor(trial_on_rich_globalmaxod_ymr020w_2_factor).
has_representation(trial_on_rich_globalmaxod_ymr020w_2_factor,'presence or absence of ymr020w').
has_input(trial_on_rich_globalmaxod_ymr020w_2,trial_on_rich_globalmaxod_ymr020w_2_data).
data(trial_on_rich_globalmaxod_ymr020w_2_data).
has_part(trial_on_rich_globalmaxod_ymr020w_2_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_ymr020w_2_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_ymr020w_2_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_ymr020w_2,'mar07-trial5_expt001-plate006').
plate('mar07-trial5_expt001-plate006').
has_proposition(trial_on_rich_globalmaxod_ymr020w_2,trial_on_rich_globalmaxod_ymr020w_2_result).
result(trial_on_rich_globalmaxod_ymr020w_2_result).
has_part(trial_on_rich_globalmaxod_ymr020w_2_result,trial_on_rich_globalmaxod_ymr020w_2_result_1).
has_representation(trial_on_rich_globalmaxod_ymr020w_2_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_ymr020w_2_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ymr020w_2_result_1,trial_on_rich_globalmaxod_ymr020w_2_result_1_proc).
procedure(trial_on_rich_globalmaxod_ymr020w_2_result_1_proc).
has_representation(trial_on_rich_globalmaxod_ymr020w_2_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ymr020w_2_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_ymr020w_2_result,trial_on_rich_globalmaxod_ymr020w_2_result_2).
has_representation(trial_on_rich_globalmaxod_ymr020w_2_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_ymr020w_2_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ymr020w_2_result_2,trial_on_rich_globalmaxod_ymr020w_2_result_2_proc).
procedure(trial_on_rich_globalmaxod_ymr020w_2_result_2_proc).
has_representation(trial_on_rich_globalmaxod_ymr020w_2_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ymr020w_2_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_ymr020w_3,trial_on_rich_globalmaxod_ymr020w_3_design).
design(trial_on_rich_globalmaxod_ymr020w_3_design).
has_proposition(trial_on_rich_globalmaxod_ymr020w_3_design,trial_on_rich_globalmaxod_ymr020w_3_factor).
factor(trial_on_rich_globalmaxod_ymr020w_3_factor).
has_representation(trial_on_rich_globalmaxod_ymr020w_3_factor,'presence or absence of ymr020w').
has_input(trial_on_rich_globalmaxod_ymr020w_3,trial_on_rich_globalmaxod_ymr020w_3_data).
data(trial_on_rich_globalmaxod_ymr020w_3_data).
has_part(trial_on_rich_globalmaxod_ymr020w_3_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_ymr020w_3_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_ymr020w_3_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_ymr020w_3,'mar07-trial7_expt001-plate004').
plate('mar07-trial7_expt001-plate004').
has_proposition(trial_on_rich_globalmaxod_ymr020w_3,trial_on_rich_globalmaxod_ymr020w_3_result).
result(trial_on_rich_globalmaxod_ymr020w_3_result).
has_part(trial_on_rich_globalmaxod_ymr020w_3_result,trial_on_rich_globalmaxod_ymr020w_3_result_1).
has_representation(trial_on_rich_globalmaxod_ymr020w_3_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_ymr020w_3_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ymr020w_3_result_1,trial_on_rich_globalmaxod_ymr020w_3_result_1_proc).
procedure(trial_on_rich_globalmaxod_ymr020w_3_result_1_proc).
has_representation(trial_on_rich_globalmaxod_ymr020w_3_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ymr020w_3_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_ymr020w_3_result,trial_on_rich_globalmaxod_ymr020w_3_result_2).
has_representation(trial_on_rich_globalmaxod_ymr020w_3_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_ymr020w_3_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ymr020w_3_result_2,trial_on_rich_globalmaxod_ymr020w_3_result_2_proc).
procedure(trial_on_rich_globalmaxod_ymr020w_3_result_2_proc).
has_representation(trial_on_rich_globalmaxod_ymr020w_3_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ymr020w_3_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_ymr020w_4,trial_on_rich_globalmaxod_ymr020w_4_design).
design(trial_on_rich_globalmaxod_ymr020w_4_design).
has_proposition(trial_on_rich_globalmaxod_ymr020w_4_design,trial_on_rich_globalmaxod_ymr020w_4_factor).
factor(trial_on_rich_globalmaxod_ymr020w_4_factor).
has_representation(trial_on_rich_globalmaxod_ymr020w_4_factor,'presence or absence of ymr020w').
has_input(trial_on_rich_globalmaxod_ymr020w_4,trial_on_rich_globalmaxod_ymr020w_4_data).
data(trial_on_rich_globalmaxod_ymr020w_4_data).
has_part(trial_on_rich_globalmaxod_ymr020w_4_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_ymr020w_4_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_ymr020w_4_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_ymr020w_4,'mar07-trial7_expt001-plate006').
plate('mar07-trial7_expt001-plate006').
has_proposition(trial_on_rich_globalmaxod_ymr020w_4,trial_on_rich_globalmaxod_ymr020w_4_result).
result(trial_on_rich_globalmaxod_ymr020w_4_result).
has_part(trial_on_rich_globalmaxod_ymr020w_4_result,trial_on_rich_globalmaxod_ymr020w_4_result_1).
has_representation(trial_on_rich_globalmaxod_ymr020w_4_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_ymr020w_4_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ymr020w_4_result_1,trial_on_rich_globalmaxod_ymr020w_4_result_1_proc).
procedure(trial_on_rich_globalmaxod_ymr020w_4_result_1_proc).
has_representation(trial_on_rich_globalmaxod_ymr020w_4_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ymr020w_4_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_ymr020w_4_result,trial_on_rich_globalmaxod_ymr020w_4_result_2).
has_representation(trial_on_rich_globalmaxod_ymr020w_4_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_ymr020w_4_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ymr020w_4_result_2,trial_on_rich_globalmaxod_ymr020w_4_result_2_proc).
procedure(trial_on_rich_globalmaxod_ymr020w_4_result_2_proc).
has_representation(trial_on_rich_globalmaxod_ymr020w_4_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ymr020w_4_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_ymr020w,trial_on_rich_globalmaxod_ymr020w_results).
result(trial_on_rich_globalmaxod_ymr020w_results).
has_part(trial_on_rich_globalmaxod_ymr020w_results,trial_on_rich_globalmaxod_ymr020w_results_1).
has_representation(trial_on_rich_globalmaxod_ymr020w_results_1,'median of knockout medians missing ymr020w').
text_representation('median of knockout medians missing ymr020w').
has_proposition(trial_on_rich_globalmaxod_ymr020w_results_1,trial_on_rich_globalmaxod_ymr020w_results_1_proc).
procedure(trial_on_rich_globalmaxod_ymr020w_results_1_proc).
has_proposition(trial_on_rich_globalmaxod_ymr020w_results_1_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_rich_globalmaxod_ymr020w_results,trial_on_rich_globalmaxod_ymr020w_results_2).
has_representation(trial_on_rich_globalmaxod_ymr020w_results_2,'median of wild type medians').
text_representation('median of wild type medians').
has_proposition(trial_on_rich_globalmaxod_ymr020w_results_2,trial_on_rich_globalmaxod_ymr020w_results_2_proc).
procedure(trial_on_rich_globalmaxod_ymr020w_results_2_proc).
has_proposition(trial_on_rich_globalmaxod_ymr020w_results_2_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_rich_globalmaxod_ymr020w_results,trial_on_rich_globalmaxod_ymr020w_results_3).
has_representation(trial_on_rich_globalmaxod_ymr020w_results_3,'difference between trial_on_rich_globalmaxod_ymr020w_results_1 and trial_on_rich_globalmaxod_ymr020w_results_2').
text_representation('difference between trial_on_rich_globalmaxod_ymr020w_results_1 and trial_on_rich_globalmaxod_ymr020w_results_2').
has_proposition(study_on_rich_globalmaxod,study_on_rich_globalmaxod_result).
result(study_on_rich_globalmaxod_result).
has_part(study_on_rich_globalmaxod_result,study_on_rich_globalmaxod_result_1).
has_representation(study_on_rich_globalmaxod_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_rich_globalmaxod_result_1,'results/wr_kr_global_max_od.csv').
link('results/wr_kr_global_max_od.csv').
has_proposition(study_on_rich_globalmaxod_result_1,study_on_rich_globalmaxod_result_1_proc).
procedure(study_on_rich_globalmaxod_result_1_proc).
has_proposition(study_on_rich_globalmaxod_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_rich_globalmaxod_result,study_on_rich_globalmaxod_result_2).
has_representation(study_on_rich_globalmaxod_result_2,'bar graph (histogram) plotting study_on_rich_globalmaxod_result_1').
text_representation('bar graph (histogram) plotting study_on_rich_globalmaxod_result_1').
has_proposition(study_on_rich_globalmaxod_result_2,'results/overlayed_global_max_od0.8.tiff').
link('results/overlayed_global_max_od0.8.tiff').
has_proposition(study_on_rich_globalmaxod_result_2,study_on_rich_globalmaxod_result_2_proc).
procedure(study_on_rich_globalmaxod_result_2_proc).
has_proposition(study_on_rich_globalmaxod_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_rich_globalmaxod,study_on_rich_globalmaxod_conclusion).
conclusion(study_on_rich_globalmaxod_conclusion).
has_representation(study_on_rich_globalmaxod_conclusion,'The knockouts reach a lower global_max_od in rich than the wild type').
text_representation('The knockouts reach a lower global_max_od in rich than the wild type').
has_proposition(study_on_rich_globalmaxod_conclusion,'obtain statistical mode of study_on_rich_globalmaxod_result_1').
procedure('obtain statistical mode of study_on_rich_globalmaxod_result_1').
text_representation('obtain statistical mode of study_on_rich_globalmaxod_result_1').
has_part(study_on_rich_globalmaxod,trial_on_rich_globalmaxod_ylr017w).
trial(trial_on_rich_globalmaxod_ylr017w).
has_agent(trial_on_rich_globalmaxod_ylr017w,ylr017w).
strain(ylr017w).
has_proposition(trial_on_rich_globalmaxod_ylr017w_1,trial_on_rich_globalmaxod_ylr017w_1_design).
design(trial_on_rich_globalmaxod_ylr017w_1_design).
has_proposition(trial_on_rich_globalmaxod_ylr017w_1_design,trial_on_rich_globalmaxod_ylr017w_1_factor).
factor(trial_on_rich_globalmaxod_ylr017w_1_factor).
has_representation(trial_on_rich_globalmaxod_ylr017w_1_factor,'presence or absence of ylr017w').
has_input(trial_on_rich_globalmaxod_ylr017w_1,trial_on_rich_globalmaxod_ylr017w_1_data).
data(trial_on_rich_globalmaxod_ylr017w_1_data).
has_part(trial_on_rich_globalmaxod_ylr017w_1_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_ylr017w_1_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_ylr017w_1_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_ylr017w_1,'jan07-single_expt001-plate001').
plate('jan07-single_expt001-plate001').
has_proposition(trial_on_rich_globalmaxod_ylr017w_1,trial_on_rich_globalmaxod_ylr017w_1_result).
result(trial_on_rich_globalmaxod_ylr017w_1_result).
has_part(trial_on_rich_globalmaxod_ylr017w_1_result,trial_on_rich_globalmaxod_ylr017w_1_result_1).
has_representation(trial_on_rich_globalmaxod_ylr017w_1_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_ylr017w_1_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ylr017w_1_result_1,trial_on_rich_globalmaxod_ylr017w_1_result_1_proc).
procedure(trial_on_rich_globalmaxod_ylr017w_1_result_1_proc).
has_representation(trial_on_rich_globalmaxod_ylr017w_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ylr017w_1_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_ylr017w_1_result,trial_on_rich_globalmaxod_ylr017w_1_result_2).
has_representation(trial_on_rich_globalmaxod_ylr017w_1_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_ylr017w_1_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ylr017w_1_result_2,trial_on_rich_globalmaxod_ylr017w_1_result_2_proc).
procedure(trial_on_rich_globalmaxod_ylr017w_1_result_2_proc).
has_representation(trial_on_rich_globalmaxod_ylr017w_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ylr017w_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_ylr017w_2,trial_on_rich_globalmaxod_ylr017w_2_design).
design(trial_on_rich_globalmaxod_ylr017w_2_design).
has_proposition(trial_on_rich_globalmaxod_ylr017w_2_design,trial_on_rich_globalmaxod_ylr017w_2_factor).
factor(trial_on_rich_globalmaxod_ylr017w_2_factor).
has_representation(trial_on_rich_globalmaxod_ylr017w_2_factor,'presence or absence of ylr017w').
has_input(trial_on_rich_globalmaxod_ylr017w_2,trial_on_rich_globalmaxod_ylr017w_2_data).
data(trial_on_rich_globalmaxod_ylr017w_2_data).
has_part(trial_on_rich_globalmaxod_ylr017w_2_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_ylr017w_2_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_ylr017w_2_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_ylr017w_2,'jan07-single2_expt001-plate001').
plate('jan07-single2_expt001-plate001').
has_proposition(trial_on_rich_globalmaxod_ylr017w_2,trial_on_rich_globalmaxod_ylr017w_2_result).
result(trial_on_rich_globalmaxod_ylr017w_2_result).
has_part(trial_on_rich_globalmaxod_ylr017w_2_result,trial_on_rich_globalmaxod_ylr017w_2_result_1).
has_representation(trial_on_rich_globalmaxod_ylr017w_2_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_ylr017w_2_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ylr017w_2_result_1,trial_on_rich_globalmaxod_ylr017w_2_result_1_proc).
procedure(trial_on_rich_globalmaxod_ylr017w_2_result_1_proc).
has_representation(trial_on_rich_globalmaxod_ylr017w_2_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ylr017w_2_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_ylr017w_2_result,trial_on_rich_globalmaxod_ylr017w_2_result_2).
has_representation(trial_on_rich_globalmaxod_ylr017w_2_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_ylr017w_2_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ylr017w_2_result_2,trial_on_rich_globalmaxod_ylr017w_2_result_2_proc).
procedure(trial_on_rich_globalmaxod_ylr017w_2_result_2_proc).
has_representation(trial_on_rich_globalmaxod_ylr017w_2_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ylr017w_2_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_ylr017w_3,trial_on_rich_globalmaxod_ylr017w_3_design).
design(trial_on_rich_globalmaxod_ylr017w_3_design).
has_proposition(trial_on_rich_globalmaxod_ylr017w_3_design,trial_on_rich_globalmaxod_ylr017w_3_factor).
factor(trial_on_rich_globalmaxod_ylr017w_3_factor).
has_representation(trial_on_rich_globalmaxod_ylr017w_3_factor,'presence or absence of ylr017w').
has_input(trial_on_rich_globalmaxod_ylr017w_3,trial_on_rich_globalmaxod_ylr017w_3_data).
data(trial_on_rich_globalmaxod_ylr017w_3_data).
has_part(trial_on_rich_globalmaxod_ylr017w_3_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_ylr017w_3_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_ylr017w_3_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_ylr017w_3,'jan07-trial1_expt001-plate004').
plate('jan07-trial1_expt001-plate004').
has_proposition(trial_on_rich_globalmaxod_ylr017w_3,trial_on_rich_globalmaxod_ylr017w_3_result).
result(trial_on_rich_globalmaxod_ylr017w_3_result).
has_part(trial_on_rich_globalmaxod_ylr017w_3_result,trial_on_rich_globalmaxod_ylr017w_3_result_1).
has_representation(trial_on_rich_globalmaxod_ylr017w_3_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_ylr017w_3_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ylr017w_3_result_1,trial_on_rich_globalmaxod_ylr017w_3_result_1_proc).
procedure(trial_on_rich_globalmaxod_ylr017w_3_result_1_proc).
has_representation(trial_on_rich_globalmaxod_ylr017w_3_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ylr017w_3_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_ylr017w_3_result,trial_on_rich_globalmaxod_ylr017w_3_result_2).
has_representation(trial_on_rich_globalmaxod_ylr017w_3_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_ylr017w_3_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ylr017w_3_result_2,trial_on_rich_globalmaxod_ylr017w_3_result_2_proc).
procedure(trial_on_rich_globalmaxod_ylr017w_3_result_2_proc).
has_representation(trial_on_rich_globalmaxod_ylr017w_3_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ylr017w_3_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_ylr017w_4,trial_on_rich_globalmaxod_ylr017w_4_design).
design(trial_on_rich_globalmaxod_ylr017w_4_design).
has_proposition(trial_on_rich_globalmaxod_ylr017w_4_design,trial_on_rich_globalmaxod_ylr017w_4_factor).
factor(trial_on_rich_globalmaxod_ylr017w_4_factor).
has_representation(trial_on_rich_globalmaxod_ylr017w_4_factor,'presence or absence of ylr017w').
has_input(trial_on_rich_globalmaxod_ylr017w_4,trial_on_rich_globalmaxod_ylr017w_4_data).
data(trial_on_rich_globalmaxod_ylr017w_4_data).
has_part(trial_on_rich_globalmaxod_ylr017w_4_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_ylr017w_4_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_ylr017w_4_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_ylr017w_4,'jan07-trial1_expt001-plate006').
plate('jan07-trial1_expt001-plate006').
has_proposition(trial_on_rich_globalmaxod_ylr017w_4,trial_on_rich_globalmaxod_ylr017w_4_result).
result(trial_on_rich_globalmaxod_ylr017w_4_result).
has_part(trial_on_rich_globalmaxod_ylr017w_4_result,trial_on_rich_globalmaxod_ylr017w_4_result_1).
has_representation(trial_on_rich_globalmaxod_ylr017w_4_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_ylr017w_4_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ylr017w_4_result_1,trial_on_rich_globalmaxod_ylr017w_4_result_1_proc).
procedure(trial_on_rich_globalmaxod_ylr017w_4_result_1_proc).
has_representation(trial_on_rich_globalmaxod_ylr017w_4_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ylr017w_4_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_ylr017w_4_result,trial_on_rich_globalmaxod_ylr017w_4_result_2).
has_representation(trial_on_rich_globalmaxod_ylr017w_4_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_ylr017w_4_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ylr017w_4_result_2,trial_on_rich_globalmaxod_ylr017w_4_result_2_proc).
procedure(trial_on_rich_globalmaxod_ylr017w_4_result_2_proc).
has_representation(trial_on_rich_globalmaxod_ylr017w_4_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ylr017w_4_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_ylr017w_5,trial_on_rich_globalmaxod_ylr017w_5_design).
design(trial_on_rich_globalmaxod_ylr017w_5_design).
has_proposition(trial_on_rich_globalmaxod_ylr017w_5_design,trial_on_rich_globalmaxod_ylr017w_5_factor).
factor(trial_on_rich_globalmaxod_ylr017w_5_factor).
has_representation(trial_on_rich_globalmaxod_ylr017w_5_factor,'presence or absence of ylr017w').
has_input(trial_on_rich_globalmaxod_ylr017w_5,trial_on_rich_globalmaxod_ylr017w_5_data).
data(trial_on_rich_globalmaxod_ylr017w_5_data).
has_part(trial_on_rich_globalmaxod_ylr017w_5_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_ylr017w_5_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_ylr017w_5_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_ylr017w_5,'jan07-trial1_expt001-plate007').
plate('jan07-trial1_expt001-plate007').
has_proposition(trial_on_rich_globalmaxod_ylr017w_5,trial_on_rich_globalmaxod_ylr017w_5_result).
result(trial_on_rich_globalmaxod_ylr017w_5_result).
has_part(trial_on_rich_globalmaxod_ylr017w_5_result,trial_on_rich_globalmaxod_ylr017w_5_result_1).
has_representation(trial_on_rich_globalmaxod_ylr017w_5_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_ylr017w_5_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ylr017w_5_result_1,trial_on_rich_globalmaxod_ylr017w_5_result_1_proc).
procedure(trial_on_rich_globalmaxod_ylr017w_5_result_1_proc).
has_representation(trial_on_rich_globalmaxod_ylr017w_5_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ylr017w_5_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_ylr017w_5_result,trial_on_rich_globalmaxod_ylr017w_5_result_2).
has_representation(trial_on_rich_globalmaxod_ylr017w_5_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_ylr017w_5_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ylr017w_5_result_2,trial_on_rich_globalmaxod_ylr017w_5_result_2_proc).
procedure(trial_on_rich_globalmaxod_ylr017w_5_result_2_proc).
has_representation(trial_on_rich_globalmaxod_ylr017w_5_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ylr017w_5_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_ylr017w_6,trial_on_rich_globalmaxod_ylr017w_6_design).
design(trial_on_rich_globalmaxod_ylr017w_6_design).
has_proposition(trial_on_rich_globalmaxod_ylr017w_6_design,trial_on_rich_globalmaxod_ylr017w_6_factor).
factor(trial_on_rich_globalmaxod_ylr017w_6_factor).
has_representation(trial_on_rich_globalmaxod_ylr017w_6_factor,'presence or absence of ylr017w').
has_input(trial_on_rich_globalmaxod_ylr017w_6,trial_on_rich_globalmaxod_ylr017w_6_data).
data(trial_on_rich_globalmaxod_ylr017w_6_data).
has_part(trial_on_rich_globalmaxod_ylr017w_6_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_ylr017w_6_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_ylr017w_6_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_ylr017w_6,'jan07-trial1_expt001-plate011').
plate('jan07-trial1_expt001-plate011').
has_proposition(trial_on_rich_globalmaxod_ylr017w_6,trial_on_rich_globalmaxod_ylr017w_6_result).
result(trial_on_rich_globalmaxod_ylr017w_6_result).
has_part(trial_on_rich_globalmaxod_ylr017w_6_result,trial_on_rich_globalmaxod_ylr017w_6_result_1).
has_representation(trial_on_rich_globalmaxod_ylr017w_6_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_ylr017w_6_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ylr017w_6_result_1,trial_on_rich_globalmaxod_ylr017w_6_result_1_proc).
procedure(trial_on_rich_globalmaxod_ylr017w_6_result_1_proc).
has_representation(trial_on_rich_globalmaxod_ylr017w_6_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ylr017w_6_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_ylr017w_6_result,trial_on_rich_globalmaxod_ylr017w_6_result_2).
has_representation(trial_on_rich_globalmaxod_ylr017w_6_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_ylr017w_6_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ylr017w_6_result_2,trial_on_rich_globalmaxod_ylr017w_6_result_2_proc).
procedure(trial_on_rich_globalmaxod_ylr017w_6_result_2_proc).
has_representation(trial_on_rich_globalmaxod_ylr017w_6_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ylr017w_6_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_ylr017w_7,trial_on_rich_globalmaxod_ylr017w_7_design).
design(trial_on_rich_globalmaxod_ylr017w_7_design).
has_proposition(trial_on_rich_globalmaxod_ylr017w_7_design,trial_on_rich_globalmaxod_ylr017w_7_factor).
factor(trial_on_rich_globalmaxod_ylr017w_7_factor).
has_representation(trial_on_rich_globalmaxod_ylr017w_7_factor,'presence or absence of ylr017w').
has_input(trial_on_rich_globalmaxod_ylr017w_7,trial_on_rich_globalmaxod_ylr017w_7_data).
data(trial_on_rich_globalmaxod_ylr017w_7_data).
has_part(trial_on_rich_globalmaxod_ylr017w_7_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_ylr017w_7_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_ylr017w_7_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_ylr017w_7,'mar07-trial1_expt001-plate003').
plate('mar07-trial1_expt001-plate003').
has_proposition(trial_on_rich_globalmaxod_ylr017w_7,trial_on_rich_globalmaxod_ylr017w_7_result).
result(trial_on_rich_globalmaxod_ylr017w_7_result).
has_part(trial_on_rich_globalmaxod_ylr017w_7_result,trial_on_rich_globalmaxod_ylr017w_7_result_1).
has_representation(trial_on_rich_globalmaxod_ylr017w_7_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_ylr017w_7_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ylr017w_7_result_1,trial_on_rich_globalmaxod_ylr017w_7_result_1_proc).
procedure(trial_on_rich_globalmaxod_ylr017w_7_result_1_proc).
has_representation(trial_on_rich_globalmaxod_ylr017w_7_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ylr017w_7_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_ylr017w_7_result,trial_on_rich_globalmaxod_ylr017w_7_result_2).
has_representation(trial_on_rich_globalmaxod_ylr017w_7_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_ylr017w_7_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ylr017w_7_result_2,trial_on_rich_globalmaxod_ylr017w_7_result_2_proc).
procedure(trial_on_rich_globalmaxod_ylr017w_7_result_2_proc).
has_representation(trial_on_rich_globalmaxod_ylr017w_7_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ylr017w_7_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_ylr017w_8,trial_on_rich_globalmaxod_ylr017w_8_design).
design(trial_on_rich_globalmaxod_ylr017w_8_design).
has_proposition(trial_on_rich_globalmaxod_ylr017w_8_design,trial_on_rich_globalmaxod_ylr017w_8_factor).
factor(trial_on_rich_globalmaxod_ylr017w_8_factor).
has_representation(trial_on_rich_globalmaxod_ylr017w_8_factor,'presence or absence of ylr017w').
has_input(trial_on_rich_globalmaxod_ylr017w_8,trial_on_rich_globalmaxod_ylr017w_8_data).
data(trial_on_rich_globalmaxod_ylr017w_8_data).
has_part(trial_on_rich_globalmaxod_ylr017w_8_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_ylr017w_8_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_ylr017w_8_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_ylr017w_8,'mar07-trial1_expt001-plate004').
plate('mar07-trial1_expt001-plate004').
has_proposition(trial_on_rich_globalmaxod_ylr017w_8,trial_on_rich_globalmaxod_ylr017w_8_result).
result(trial_on_rich_globalmaxod_ylr017w_8_result).
has_part(trial_on_rich_globalmaxod_ylr017w_8_result,trial_on_rich_globalmaxod_ylr017w_8_result_1).
has_representation(trial_on_rich_globalmaxod_ylr017w_8_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_ylr017w_8_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ylr017w_8_result_1,trial_on_rich_globalmaxod_ylr017w_8_result_1_proc).
procedure(trial_on_rich_globalmaxod_ylr017w_8_result_1_proc).
has_representation(trial_on_rich_globalmaxod_ylr017w_8_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ylr017w_8_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_ylr017w_8_result,trial_on_rich_globalmaxod_ylr017w_8_result_2).
has_representation(trial_on_rich_globalmaxod_ylr017w_8_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_ylr017w_8_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ylr017w_8_result_2,trial_on_rich_globalmaxod_ylr017w_8_result_2_proc).
procedure(trial_on_rich_globalmaxod_ylr017w_8_result_2_proc).
has_representation(trial_on_rich_globalmaxod_ylr017w_8_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ylr017w_8_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_ylr017w,trial_on_rich_globalmaxod_ylr017w_results).
result(trial_on_rich_globalmaxod_ylr017w_results).
has_part(trial_on_rich_globalmaxod_ylr017w_results,trial_on_rich_globalmaxod_ylr017w_results_1).
has_representation(trial_on_rich_globalmaxod_ylr017w_results_1,'median of knockout medians missing ylr017w').
text_representation('median of knockout medians missing ylr017w').
has_proposition(trial_on_rich_globalmaxod_ylr017w_results_1,trial_on_rich_globalmaxod_ylr017w_results_1_proc).
procedure(trial_on_rich_globalmaxod_ylr017w_results_1_proc).
has_proposition(trial_on_rich_globalmaxod_ylr017w_results_1_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_rich_globalmaxod_ylr017w_results,trial_on_rich_globalmaxod_ylr017w_results_2).
has_representation(trial_on_rich_globalmaxod_ylr017w_results_2,'median of wild type medians').
text_representation('median of wild type medians').
has_proposition(trial_on_rich_globalmaxod_ylr017w_results_2,trial_on_rich_globalmaxod_ylr017w_results_2_proc).
procedure(trial_on_rich_globalmaxod_ylr017w_results_2_proc).
has_proposition(trial_on_rich_globalmaxod_ylr017w_results_2_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_rich_globalmaxod_ylr017w_results,trial_on_rich_globalmaxod_ylr017w_results_3).
has_representation(trial_on_rich_globalmaxod_ylr017w_results_3,'difference between trial_on_rich_globalmaxod_ylr017w_results_1 and trial_on_rich_globalmaxod_ylr017w_results_2').
text_representation('difference between trial_on_rich_globalmaxod_ylr017w_results_1 and trial_on_rich_globalmaxod_ylr017w_results_2').
has_proposition(study_on_rich_globalmaxod,study_on_rich_globalmaxod_result).
result(study_on_rich_globalmaxod_result).
has_part(study_on_rich_globalmaxod_result,study_on_rich_globalmaxod_result_1).
has_representation(study_on_rich_globalmaxod_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_rich_globalmaxod_result_1,'results/wr_kr_global_max_od.csv').
link('results/wr_kr_global_max_od.csv').
has_proposition(study_on_rich_globalmaxod_result_1,study_on_rich_globalmaxod_result_1_proc).
procedure(study_on_rich_globalmaxod_result_1_proc).
has_proposition(study_on_rich_globalmaxod_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_rich_globalmaxod_result,study_on_rich_globalmaxod_result_2).
has_representation(study_on_rich_globalmaxod_result_2,'bar graph (histogram) plotting study_on_rich_globalmaxod_result_1').
text_representation('bar graph (histogram) plotting study_on_rich_globalmaxod_result_1').
has_proposition(study_on_rich_globalmaxod_result_2,'results/overlayed_global_max_od0.8.tiff').
link('results/overlayed_global_max_od0.8.tiff').
has_proposition(study_on_rich_globalmaxod_result_2,study_on_rich_globalmaxod_result_2_proc).
procedure(study_on_rich_globalmaxod_result_2_proc).
has_proposition(study_on_rich_globalmaxod_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_rich_globalmaxod,study_on_rich_globalmaxod_conclusion).
conclusion(study_on_rich_globalmaxod_conclusion).
has_representation(study_on_rich_globalmaxod_conclusion,'The knockouts reach a lower global_max_od in rich than the wild type').
text_representation('The knockouts reach a lower global_max_od in rich than the wild type').
has_proposition(study_on_rich_globalmaxod_conclusion,'obtain statistical mode of study_on_rich_globalmaxod_result_1').
procedure('obtain statistical mode of study_on_rich_globalmaxod_result_1').
text_representation('obtain statistical mode of study_on_rich_globalmaxod_result_1').
has_part(study_on_rich_globalmaxod,trial_on_rich_globalmaxod_rsyd000004).
trial(trial_on_rich_globalmaxod_rsyd000004).
has_agent(trial_on_rich_globalmaxod_rsyd000004,rsyd000004).
strain(rsyd000004).
has_proposition(trial_on_rich_globalmaxod_rsyd000004_1,trial_on_rich_globalmaxod_rsyd000004_1_design).
design(trial_on_rich_globalmaxod_rsyd000004_1_design).
has_proposition(trial_on_rich_globalmaxod_rsyd000004_1_design,trial_on_rich_globalmaxod_rsyd000004_1_factor).
factor(trial_on_rich_globalmaxod_rsyd000004_1_factor).
has_representation(trial_on_rich_globalmaxod_rsyd000004_1_factor,'presence or absence of rsyd000004').
has_input(trial_on_rich_globalmaxod_rsyd000004_1,trial_on_rich_globalmaxod_rsyd000004_1_data).
data(trial_on_rich_globalmaxod_rsyd000004_1_data).
has_part(trial_on_rich_globalmaxod_rsyd000004_1_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_rsyd000004_1_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_rsyd000004_1_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_rsyd000004_1,'trial-130407_expt001-plate001').
plate('trial-130407_expt001-plate001').
has_proposition(trial_on_rich_globalmaxod_rsyd000004_1,trial_on_rich_globalmaxod_rsyd000004_1_result).
result(trial_on_rich_globalmaxod_rsyd000004_1_result).
has_part(trial_on_rich_globalmaxod_rsyd000004_1_result,trial_on_rich_globalmaxod_rsyd000004_1_result_1).
has_representation(trial_on_rich_globalmaxod_rsyd000004_1_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_rsyd000004_1_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_rsyd000004_1_result_1,trial_on_rich_globalmaxod_rsyd000004_1_result_1_proc).
procedure(trial_on_rich_globalmaxod_rsyd000004_1_result_1_proc).
has_representation(trial_on_rich_globalmaxod_rsyd000004_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_rsyd000004_1_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_rsyd000004_1_result,trial_on_rich_globalmaxod_rsyd000004_1_result_2).
has_representation(trial_on_rich_globalmaxod_rsyd000004_1_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_rsyd000004_1_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_rsyd000004_1_result_2,trial_on_rich_globalmaxod_rsyd000004_1_result_2_proc).
procedure(trial_on_rich_globalmaxod_rsyd000004_1_result_2_proc).
has_representation(trial_on_rich_globalmaxod_rsyd000004_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_rsyd000004_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_rsyd000004_2,trial_on_rich_globalmaxod_rsyd000004_2_design).
design(trial_on_rich_globalmaxod_rsyd000004_2_design).
has_proposition(trial_on_rich_globalmaxod_rsyd000004_2_design,trial_on_rich_globalmaxod_rsyd000004_2_factor).
factor(trial_on_rich_globalmaxod_rsyd000004_2_factor).
has_representation(trial_on_rich_globalmaxod_rsyd000004_2_factor,'presence or absence of rsyd000004').
has_input(trial_on_rich_globalmaxod_rsyd000004_2,trial_on_rich_globalmaxod_rsyd000004_2_data).
data(trial_on_rich_globalmaxod_rsyd000004_2_data).
has_part(trial_on_rich_globalmaxod_rsyd000004_2_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_rsyd000004_2_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_rsyd000004_2_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_rsyd000004_2,'trial-130407_expt001-plate002').
plate('trial-130407_expt001-plate002').
has_proposition(trial_on_rich_globalmaxod_rsyd000004_2,trial_on_rich_globalmaxod_rsyd000004_2_result).
result(trial_on_rich_globalmaxod_rsyd000004_2_result).
has_part(trial_on_rich_globalmaxod_rsyd000004_2_result,trial_on_rich_globalmaxod_rsyd000004_2_result_1).
has_representation(trial_on_rich_globalmaxod_rsyd000004_2_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_rsyd000004_2_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_rsyd000004_2_result_1,trial_on_rich_globalmaxod_rsyd000004_2_result_1_proc).
procedure(trial_on_rich_globalmaxod_rsyd000004_2_result_1_proc).
has_representation(trial_on_rich_globalmaxod_rsyd000004_2_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_rsyd000004_2_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_rsyd000004_2_result,trial_on_rich_globalmaxod_rsyd000004_2_result_2).
has_representation(trial_on_rich_globalmaxod_rsyd000004_2_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_rsyd000004_2_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_rsyd000004_2_result_2,trial_on_rich_globalmaxod_rsyd000004_2_result_2_proc).
procedure(trial_on_rich_globalmaxod_rsyd000004_2_result_2_proc).
has_representation(trial_on_rich_globalmaxod_rsyd000004_2_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_rsyd000004_2_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_rsyd000004_3,trial_on_rich_globalmaxod_rsyd000004_3_design).
design(trial_on_rich_globalmaxod_rsyd000004_3_design).
has_proposition(trial_on_rich_globalmaxod_rsyd000004_3_design,trial_on_rich_globalmaxod_rsyd000004_3_factor).
factor(trial_on_rich_globalmaxod_rsyd000004_3_factor).
has_representation(trial_on_rich_globalmaxod_rsyd000004_3_factor,'presence or absence of rsyd000004').
has_input(trial_on_rich_globalmaxod_rsyd000004_3,trial_on_rich_globalmaxod_rsyd000004_3_data).
data(trial_on_rich_globalmaxod_rsyd000004_3_data).
has_part(trial_on_rich_globalmaxod_rsyd000004_3_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_rsyd000004_3_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_rsyd000004_3_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_rsyd000004_3,'trial-130407_expt001-plate003').
plate('trial-130407_expt001-plate003').
has_proposition(trial_on_rich_globalmaxod_rsyd000004_3,trial_on_rich_globalmaxod_rsyd000004_3_result).
result(trial_on_rich_globalmaxod_rsyd000004_3_result).
has_part(trial_on_rich_globalmaxod_rsyd000004_3_result,trial_on_rich_globalmaxod_rsyd000004_3_result_1).
has_representation(trial_on_rich_globalmaxod_rsyd000004_3_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_rsyd000004_3_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_rsyd000004_3_result_1,trial_on_rich_globalmaxod_rsyd000004_3_result_1_proc).
procedure(trial_on_rich_globalmaxod_rsyd000004_3_result_1_proc).
has_representation(trial_on_rich_globalmaxod_rsyd000004_3_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_rsyd000004_3_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_rsyd000004_3_result,trial_on_rich_globalmaxod_rsyd000004_3_result_2).
has_representation(trial_on_rich_globalmaxod_rsyd000004_3_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_rsyd000004_3_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_rsyd000004_3_result_2,trial_on_rich_globalmaxod_rsyd000004_3_result_2_proc).
procedure(trial_on_rich_globalmaxod_rsyd000004_3_result_2_proc).
has_representation(trial_on_rich_globalmaxod_rsyd000004_3_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_rsyd000004_3_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_rsyd000004,trial_on_rich_globalmaxod_rsyd000004_results).
result(trial_on_rich_globalmaxod_rsyd000004_results).
has_part(trial_on_rich_globalmaxod_rsyd000004_results,trial_on_rich_globalmaxod_rsyd000004_results_1).
has_representation(trial_on_rich_globalmaxod_rsyd000004_results_1,'median of knockout medians missing rsyd000004').
text_representation('median of knockout medians missing rsyd000004').
has_proposition(trial_on_rich_globalmaxod_rsyd000004_results_1,trial_on_rich_globalmaxod_rsyd000004_results_1_proc).
procedure(trial_on_rich_globalmaxod_rsyd000004_results_1_proc).
has_proposition(trial_on_rich_globalmaxod_rsyd000004_results_1_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_rich_globalmaxod_rsyd000004_results,trial_on_rich_globalmaxod_rsyd000004_results_2).
has_representation(trial_on_rich_globalmaxod_rsyd000004_results_2,'median of wild type medians').
text_representation('median of wild type medians').
has_proposition(trial_on_rich_globalmaxod_rsyd000004_results_2,trial_on_rich_globalmaxod_rsyd000004_results_2_proc).
procedure(trial_on_rich_globalmaxod_rsyd000004_results_2_proc).
has_proposition(trial_on_rich_globalmaxod_rsyd000004_results_2_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_rich_globalmaxod_rsyd000004_results,trial_on_rich_globalmaxod_rsyd000004_results_3).
has_representation(trial_on_rich_globalmaxod_rsyd000004_results_3,'difference between trial_on_rich_globalmaxod_rsyd000004_results_1 and trial_on_rich_globalmaxod_rsyd000004_results_2').
text_representation('difference between trial_on_rich_globalmaxod_rsyd000004_results_1 and trial_on_rich_globalmaxod_rsyd000004_results_2').
has_proposition(study_on_rich_globalmaxod,study_on_rich_globalmaxod_result).
result(study_on_rich_globalmaxod_result).
has_part(study_on_rich_globalmaxod_result,study_on_rich_globalmaxod_result_1).
has_representation(study_on_rich_globalmaxod_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_rich_globalmaxod_result_1,'results/wr_kr_global_max_od.csv').
link('results/wr_kr_global_max_od.csv').
has_proposition(study_on_rich_globalmaxod_result_1,study_on_rich_globalmaxod_result_1_proc).
procedure(study_on_rich_globalmaxod_result_1_proc).
has_proposition(study_on_rich_globalmaxod_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_rich_globalmaxod_result,study_on_rich_globalmaxod_result_2).
has_representation(study_on_rich_globalmaxod_result_2,'bar graph (histogram) plotting study_on_rich_globalmaxod_result_1').
text_representation('bar graph (histogram) plotting study_on_rich_globalmaxod_result_1').
has_proposition(study_on_rich_globalmaxod_result_2,'results/overlayed_global_max_od0.8.tiff').
link('results/overlayed_global_max_od0.8.tiff').
has_proposition(study_on_rich_globalmaxod_result_2,study_on_rich_globalmaxod_result_2_proc).
procedure(study_on_rich_globalmaxod_result_2_proc).
has_proposition(study_on_rich_globalmaxod_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_rich_globalmaxod,study_on_rich_globalmaxod_conclusion).
conclusion(study_on_rich_globalmaxod_conclusion).
has_representation(study_on_rich_globalmaxod_conclusion,'The knockouts reach a lower global_max_od in rich than the wild type').
text_representation('The knockouts reach a lower global_max_od in rich than the wild type').
has_proposition(study_on_rich_globalmaxod_conclusion,'obtain statistical mode of study_on_rich_globalmaxod_result_1').
procedure('obtain statistical mode of study_on_rich_globalmaxod_result_1').
text_representation('obtain statistical mode of study_on_rich_globalmaxod_result_1').
has_part(study_on_rich_globalmaxod,trial_on_rich_globalmaxod_rsyd000005).
trial(trial_on_rich_globalmaxod_rsyd000005).
has_agent(trial_on_rich_globalmaxod_rsyd000005,rsyd000005).
strain(rsyd000005).
has_proposition(trial_on_rich_globalmaxod_rsyd000005_1,trial_on_rich_globalmaxod_rsyd000005_1_design).
design(trial_on_rich_globalmaxod_rsyd000005_1_design).
has_proposition(trial_on_rich_globalmaxod_rsyd000005_1_design,trial_on_rich_globalmaxod_rsyd000005_1_factor).
factor(trial_on_rich_globalmaxod_rsyd000005_1_factor).
has_representation(trial_on_rich_globalmaxod_rsyd000005_1_factor,'presence or absence of rsyd000005').
has_input(trial_on_rich_globalmaxod_rsyd000005_1,trial_on_rich_globalmaxod_rsyd000005_1_data).
data(trial_on_rich_globalmaxod_rsyd000005_1_data).
has_part(trial_on_rich_globalmaxod_rsyd000005_1_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_rsyd000005_1_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_rsyd000005_1_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_rsyd000005_1,'trial-130407_expt001-plate004').
plate('trial-130407_expt001-plate004').
has_proposition(trial_on_rich_globalmaxod_rsyd000005_1,trial_on_rich_globalmaxod_rsyd000005_1_result).
result(trial_on_rich_globalmaxod_rsyd000005_1_result).
has_part(trial_on_rich_globalmaxod_rsyd000005_1_result,trial_on_rich_globalmaxod_rsyd000005_1_result_1).
has_representation(trial_on_rich_globalmaxod_rsyd000005_1_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_rsyd000005_1_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_rsyd000005_1_result_1,trial_on_rich_globalmaxod_rsyd000005_1_result_1_proc).
procedure(trial_on_rich_globalmaxod_rsyd000005_1_result_1_proc).
has_representation(trial_on_rich_globalmaxod_rsyd000005_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_rsyd000005_1_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_rsyd000005_1_result,trial_on_rich_globalmaxod_rsyd000005_1_result_2).
has_representation(trial_on_rich_globalmaxod_rsyd000005_1_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
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link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_rsyd000005_1_result_2,trial_on_rich_globalmaxod_rsyd000005_1_result_2_proc).
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text_representation('procedure for obtaining median').
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link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_rsyd000005_2,trial_on_rich_globalmaxod_rsyd000005_2_design).
design(trial_on_rich_globalmaxod_rsyd000005_2_design).
has_proposition(trial_on_rich_globalmaxod_rsyd000005_2_design,trial_on_rich_globalmaxod_rsyd000005_2_factor).
factor(trial_on_rich_globalmaxod_rsyd000005_2_factor).
has_representation(trial_on_rich_globalmaxod_rsyd000005_2_factor,'presence or absence of rsyd000005').
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data(trial_on_rich_globalmaxod_rsyd000005_2_data).
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has_proposition(trial_on_rich_globalmaxod_rsyd000005_2_data,'../data/').
link('../data/').
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plate('trial-130407_expt001-plate005').
has_proposition(trial_on_rich_globalmaxod_rsyd000005_2,trial_on_rich_globalmaxod_rsyd000005_2_result).
result(trial_on_rich_globalmaxod_rsyd000005_2_result).
has_part(trial_on_rich_globalmaxod_rsyd000005_2_result,trial_on_rich_globalmaxod_rsyd000005_2_result_1).
has_representation(trial_on_rich_globalmaxod_rsyd000005_2_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_rsyd000005_2_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_rsyd000005_2_result_1,trial_on_rich_globalmaxod_rsyd000005_2_result_1_proc).
procedure(trial_on_rich_globalmaxod_rsyd000005_2_result_1_proc).
has_representation(trial_on_rich_globalmaxod_rsyd000005_2_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_rsyd000005_2_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_rsyd000005_2_result,trial_on_rich_globalmaxod_rsyd000005_2_result_2).
has_representation(trial_on_rich_globalmaxod_rsyd000005_2_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
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link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_rsyd000005_2_result_2,trial_on_rich_globalmaxod_rsyd000005_2_result_2_proc).
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text_representation('procedure for obtaining median').
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link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_rsyd000005_3,trial_on_rich_globalmaxod_rsyd000005_3_design).
design(trial_on_rich_globalmaxod_rsyd000005_3_design).
has_proposition(trial_on_rich_globalmaxod_rsyd000005_3_design,trial_on_rich_globalmaxod_rsyd000005_3_factor).
factor(trial_on_rich_globalmaxod_rsyd000005_3_factor).
has_representation(trial_on_rich_globalmaxod_rsyd000005_3_factor,'presence or absence of rsyd000005').
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data(trial_on_rich_globalmaxod_rsyd000005_3_data).
has_part(trial_on_rich_globalmaxod_rsyd000005_3_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_rsyd000005_3_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_rsyd000005_3_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_rsyd000005_3,'trial-130407_expt001-plate006').
plate('trial-130407_expt001-plate006').
has_proposition(trial_on_rich_globalmaxod_rsyd000005_3,trial_on_rich_globalmaxod_rsyd000005_3_result).
result(trial_on_rich_globalmaxod_rsyd000005_3_result).
has_part(trial_on_rich_globalmaxod_rsyd000005_3_result,trial_on_rich_globalmaxod_rsyd000005_3_result_1).
has_representation(trial_on_rich_globalmaxod_rsyd000005_3_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_rsyd000005_3_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_rsyd000005_3_result_1,trial_on_rich_globalmaxod_rsyd000005_3_result_1_proc).
procedure(trial_on_rich_globalmaxod_rsyd000005_3_result_1_proc).
has_representation(trial_on_rich_globalmaxod_rsyd000005_3_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
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link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_rsyd000005_3_result,trial_on_rich_globalmaxod_rsyd000005_3_result_2).
has_representation(trial_on_rich_globalmaxod_rsyd000005_3_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_rsyd000005_3_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_rsyd000005_3_result_2,trial_on_rich_globalmaxod_rsyd000005_3_result_2_proc).
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text_representation('procedure for obtaining median').
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link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_rsyd000005,trial_on_rich_globalmaxod_rsyd000005_results).
result(trial_on_rich_globalmaxod_rsyd000005_results).
has_part(trial_on_rich_globalmaxod_rsyd000005_results,trial_on_rich_globalmaxod_rsyd000005_results_1).
has_representation(trial_on_rich_globalmaxod_rsyd000005_results_1,'median of knockout medians missing rsyd000005').
text_representation('median of knockout medians missing rsyd000005').
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has_proposition(trial_on_rich_globalmaxod_rsyd000005_results_1_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_rich_globalmaxod_rsyd000005_results,trial_on_rich_globalmaxod_rsyd000005_results_2).
has_representation(trial_on_rich_globalmaxod_rsyd000005_results_2,'median of wild type medians').
text_representation('median of wild type medians').
has_proposition(trial_on_rich_globalmaxod_rsyd000005_results_2,trial_on_rich_globalmaxod_rsyd000005_results_2_proc).
procedure(trial_on_rich_globalmaxod_rsyd000005_results_2_proc).
has_proposition(trial_on_rich_globalmaxod_rsyd000005_results_2_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_rich_globalmaxod_rsyd000005_results,trial_on_rich_globalmaxod_rsyd000005_results_3).
has_representation(trial_on_rich_globalmaxod_rsyd000005_results_3,'difference between trial_on_rich_globalmaxod_rsyd000005_results_1 and trial_on_rich_globalmaxod_rsyd000005_results_2').
text_representation('difference between trial_on_rich_globalmaxod_rsyd000005_results_1 and trial_on_rich_globalmaxod_rsyd000005_results_2').
has_proposition(study_on_rich_globalmaxod,study_on_rich_globalmaxod_result).
result(study_on_rich_globalmaxod_result).
has_part(study_on_rich_globalmaxod_result,study_on_rich_globalmaxod_result_1).
has_representation(study_on_rich_globalmaxod_result_1,'vector of differences').
text_representation('vector of differences').
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link('results/wr_kr_global_max_od.csv').
has_proposition(study_on_rich_globalmaxod_result_1,study_on_rich_globalmaxod_result_1_proc).
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has_proposition(study_on_rich_globalmaxod_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_rich_globalmaxod_result,study_on_rich_globalmaxod_result_2).
has_representation(study_on_rich_globalmaxod_result_2,'bar graph (histogram) plotting study_on_rich_globalmaxod_result_1').
text_representation('bar graph (histogram) plotting study_on_rich_globalmaxod_result_1').
has_proposition(study_on_rich_globalmaxod_result_2,'results/overlayed_global_max_od0.8.tiff').
link('results/overlayed_global_max_od0.8.tiff').
has_proposition(study_on_rich_globalmaxod_result_2,study_on_rich_globalmaxod_result_2_proc).
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has_proposition(study_on_rich_globalmaxod_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_rich_globalmaxod,study_on_rich_globalmaxod_conclusion).
conclusion(study_on_rich_globalmaxod_conclusion).
has_representation(study_on_rich_globalmaxod_conclusion,'The knockouts reach a lower global_max_od in rich than the wild type').
text_representation('The knockouts reach a lower global_max_od in rich than the wild type').
has_proposition(study_on_rich_globalmaxod_conclusion,'obtain statistical mode of study_on_rich_globalmaxod_result_1').
procedure('obtain statistical mode of study_on_rich_globalmaxod_result_1').
text_representation('obtain statistical mode of study_on_rich_globalmaxod_result_1').
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trial(trial_on_rich_globalmaxod_ynr073c).
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strain(ynr073c).
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design(trial_on_rich_globalmaxod_ynr073c_1_design).
has_proposition(trial_on_rich_globalmaxod_ynr073c_1_design,trial_on_rich_globalmaxod_ynr073c_1_factor).
factor(trial_on_rich_globalmaxod_ynr073c_1_factor).
has_representation(trial_on_rich_globalmaxod_ynr073c_1_factor,'presence or absence of ynr073c').
has_input(trial_on_rich_globalmaxod_ynr073c_1,trial_on_rich_globalmaxod_ynr073c_1_data).
data(trial_on_rich_globalmaxod_ynr073c_1_data).
has_part(trial_on_rich_globalmaxod_ynr073c_1_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_ynr073c_1_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_ynr073c_1_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_ynr073c_1,'mar07-trial3_expt001-plate001').
plate('mar07-trial3_expt001-plate001').
has_proposition(trial_on_rich_globalmaxod_ynr073c_1,trial_on_rich_globalmaxod_ynr073c_1_result).
result(trial_on_rich_globalmaxod_ynr073c_1_result).
has_part(trial_on_rich_globalmaxod_ynr073c_1_result,trial_on_rich_globalmaxod_ynr073c_1_result_1).
has_representation(trial_on_rich_globalmaxod_ynr073c_1_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_ynr073c_1_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ynr073c_1_result_1,trial_on_rich_globalmaxod_ynr073c_1_result_1_proc).
procedure(trial_on_rich_globalmaxod_ynr073c_1_result_1_proc).
has_representation(trial_on_rich_globalmaxod_ynr073c_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ynr073c_1_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_ynr073c_1_result,trial_on_rich_globalmaxod_ynr073c_1_result_2).
has_representation(trial_on_rich_globalmaxod_ynr073c_1_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_ynr073c_1_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ynr073c_1_result_2,trial_on_rich_globalmaxod_ynr073c_1_result_2_proc).
procedure(trial_on_rich_globalmaxod_ynr073c_1_result_2_proc).
has_representation(trial_on_rich_globalmaxod_ynr073c_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ynr073c_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_ynr073c_2,trial_on_rich_globalmaxod_ynr073c_2_design).
design(trial_on_rich_globalmaxod_ynr073c_2_design).
has_proposition(trial_on_rich_globalmaxod_ynr073c_2_design,trial_on_rich_globalmaxod_ynr073c_2_factor).
factor(trial_on_rich_globalmaxod_ynr073c_2_factor).
has_representation(trial_on_rich_globalmaxod_ynr073c_2_factor,'presence or absence of ynr073c').
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data(trial_on_rich_globalmaxod_ynr073c_2_data).
has_part(trial_on_rich_globalmaxod_ynr073c_2_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_ynr073c_2_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_ynr073c_2_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_ynr073c_2,'mar07-trial3_expt001-plate002').
plate('mar07-trial3_expt001-plate002').
has_proposition(trial_on_rich_globalmaxod_ynr073c_2,trial_on_rich_globalmaxod_ynr073c_2_result).
result(trial_on_rich_globalmaxod_ynr073c_2_result).
has_part(trial_on_rich_globalmaxod_ynr073c_2_result,trial_on_rich_globalmaxod_ynr073c_2_result_1).
has_representation(trial_on_rich_globalmaxod_ynr073c_2_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_ynr073c_2_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ynr073c_2_result_1,trial_on_rich_globalmaxod_ynr073c_2_result_1_proc).
procedure(trial_on_rich_globalmaxod_ynr073c_2_result_1_proc).
has_representation(trial_on_rich_globalmaxod_ynr073c_2_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ynr073c_2_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_ynr073c_2_result,trial_on_rich_globalmaxod_ynr073c_2_result_2).
has_representation(trial_on_rich_globalmaxod_ynr073c_2_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_ynr073c_2_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ynr073c_2_result_2,trial_on_rich_globalmaxod_ynr073c_2_result_2_proc).
procedure(trial_on_rich_globalmaxod_ynr073c_2_result_2_proc).
has_representation(trial_on_rich_globalmaxod_ynr073c_2_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ynr073c_2_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_ynr073c_3,trial_on_rich_globalmaxod_ynr073c_3_design).
design(trial_on_rich_globalmaxod_ynr073c_3_design).
has_proposition(trial_on_rich_globalmaxod_ynr073c_3_design,trial_on_rich_globalmaxod_ynr073c_3_factor).
factor(trial_on_rich_globalmaxod_ynr073c_3_factor).
has_representation(trial_on_rich_globalmaxod_ynr073c_3_factor,'presence or absence of ynr073c').
has_input(trial_on_rich_globalmaxod_ynr073c_3,trial_on_rich_globalmaxod_ynr073c_3_data).
data(trial_on_rich_globalmaxod_ynr073c_3_data).
has_part(trial_on_rich_globalmaxod_ynr073c_3_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_ynr073c_3_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_ynr073c_3_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_ynr073c_3,'mar07-trial3_expt001-plate005').
plate('mar07-trial3_expt001-plate005').
has_proposition(trial_on_rich_globalmaxod_ynr073c_3,trial_on_rich_globalmaxod_ynr073c_3_result).
result(trial_on_rich_globalmaxod_ynr073c_3_result).
has_part(trial_on_rich_globalmaxod_ynr073c_3_result,trial_on_rich_globalmaxod_ynr073c_3_result_1).
has_representation(trial_on_rich_globalmaxod_ynr073c_3_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_ynr073c_3_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ynr073c_3_result_1,trial_on_rich_globalmaxod_ynr073c_3_result_1_proc).
procedure(trial_on_rich_globalmaxod_ynr073c_3_result_1_proc).
has_representation(trial_on_rich_globalmaxod_ynr073c_3_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ynr073c_3_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_ynr073c_3_result,trial_on_rich_globalmaxod_ynr073c_3_result_2).
has_representation(trial_on_rich_globalmaxod_ynr073c_3_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_ynr073c_3_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ynr073c_3_result_2,trial_on_rich_globalmaxod_ynr073c_3_result_2_proc).
procedure(trial_on_rich_globalmaxod_ynr073c_3_result_2_proc).
has_representation(trial_on_rich_globalmaxod_ynr073c_3_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ynr073c_3_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_ynr073c_4,trial_on_rich_globalmaxod_ynr073c_4_design).
design(trial_on_rich_globalmaxod_ynr073c_4_design).
has_proposition(trial_on_rich_globalmaxod_ynr073c_4_design,trial_on_rich_globalmaxod_ynr073c_4_factor).
factor(trial_on_rich_globalmaxod_ynr073c_4_factor).
has_representation(trial_on_rich_globalmaxod_ynr073c_4_factor,'presence or absence of ynr073c').
has_input(trial_on_rich_globalmaxod_ynr073c_4,trial_on_rich_globalmaxod_ynr073c_4_data).
data(trial_on_rich_globalmaxod_ynr073c_4_data).
has_part(trial_on_rich_globalmaxod_ynr073c_4_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_ynr073c_4_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_ynr073c_4_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_ynr073c_4,'mar07-trial3_expt001-plate006').
plate('mar07-trial3_expt001-plate006').
has_proposition(trial_on_rich_globalmaxod_ynr073c_4,trial_on_rich_globalmaxod_ynr073c_4_result).
result(trial_on_rich_globalmaxod_ynr073c_4_result).
has_part(trial_on_rich_globalmaxod_ynr073c_4_result,trial_on_rich_globalmaxod_ynr073c_4_result_1).
has_representation(trial_on_rich_globalmaxod_ynr073c_4_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_ynr073c_4_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ynr073c_4_result_1,trial_on_rich_globalmaxod_ynr073c_4_result_1_proc).
procedure(trial_on_rich_globalmaxod_ynr073c_4_result_1_proc).
has_representation(trial_on_rich_globalmaxod_ynr073c_4_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ynr073c_4_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_ynr073c_4_result,trial_on_rich_globalmaxod_ynr073c_4_result_2).
has_representation(trial_on_rich_globalmaxod_ynr073c_4_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_ynr073c_4_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ynr073c_4_result_2,trial_on_rich_globalmaxod_ynr073c_4_result_2_proc).
procedure(trial_on_rich_globalmaxod_ynr073c_4_result_2_proc).
has_representation(trial_on_rich_globalmaxod_ynr073c_4_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ynr073c_4_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_ynr073c_5,trial_on_rich_globalmaxod_ynr073c_5_design).
design(trial_on_rich_globalmaxod_ynr073c_5_design).
has_proposition(trial_on_rich_globalmaxod_ynr073c_5_design,trial_on_rich_globalmaxod_ynr073c_5_factor).
factor(trial_on_rich_globalmaxod_ynr073c_5_factor).
has_representation(trial_on_rich_globalmaxod_ynr073c_5_factor,'presence or absence of ynr073c').
has_input(trial_on_rich_globalmaxod_ynr073c_5,trial_on_rich_globalmaxod_ynr073c_5_data).
data(trial_on_rich_globalmaxod_ynr073c_5_data).
has_part(trial_on_rich_globalmaxod_ynr073c_5_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_ynr073c_5_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_ynr073c_5_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_ynr073c_5,'mar07-trial5_expt001-plate004').
plate('mar07-trial5_expt001-plate004').
has_proposition(trial_on_rich_globalmaxod_ynr073c_5,trial_on_rich_globalmaxod_ynr073c_5_result).
result(trial_on_rich_globalmaxod_ynr073c_5_result).
has_part(trial_on_rich_globalmaxod_ynr073c_5_result,trial_on_rich_globalmaxod_ynr073c_5_result_1).
has_representation(trial_on_rich_globalmaxod_ynr073c_5_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_ynr073c_5_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ynr073c_5_result_1,trial_on_rich_globalmaxod_ynr073c_5_result_1_proc).
procedure(trial_on_rich_globalmaxod_ynr073c_5_result_1_proc).
has_representation(trial_on_rich_globalmaxod_ynr073c_5_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ynr073c_5_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_ynr073c_5_result,trial_on_rich_globalmaxod_ynr073c_5_result_2).
has_representation(trial_on_rich_globalmaxod_ynr073c_5_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_ynr073c_5_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ynr073c_5_result_2,trial_on_rich_globalmaxod_ynr073c_5_result_2_proc).
procedure(trial_on_rich_globalmaxod_ynr073c_5_result_2_proc).
has_representation(trial_on_rich_globalmaxod_ynr073c_5_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ynr073c_5_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_ynr073c_6,trial_on_rich_globalmaxod_ynr073c_6_design).
design(trial_on_rich_globalmaxod_ynr073c_6_design).
has_proposition(trial_on_rich_globalmaxod_ynr073c_6_design,trial_on_rich_globalmaxod_ynr073c_6_factor).
factor(trial_on_rich_globalmaxod_ynr073c_6_factor).
has_representation(trial_on_rich_globalmaxod_ynr073c_6_factor,'presence or absence of ynr073c').
has_input(trial_on_rich_globalmaxod_ynr073c_6,trial_on_rich_globalmaxod_ynr073c_6_data).
data(trial_on_rich_globalmaxod_ynr073c_6_data).
has_part(trial_on_rich_globalmaxod_ynr073c_6_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_ynr073c_6_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_ynr073c_6_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_ynr073c_6,'mar07-trial7_expt001-plate002').
plate('mar07-trial7_expt001-plate002').
has_proposition(trial_on_rich_globalmaxod_ynr073c_6,trial_on_rich_globalmaxod_ynr073c_6_result).
result(trial_on_rich_globalmaxod_ynr073c_6_result).
has_part(trial_on_rich_globalmaxod_ynr073c_6_result,trial_on_rich_globalmaxod_ynr073c_6_result_1).
has_representation(trial_on_rich_globalmaxod_ynr073c_6_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_ynr073c_6_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ynr073c_6_result_1,trial_on_rich_globalmaxod_ynr073c_6_result_1_proc).
procedure(trial_on_rich_globalmaxod_ynr073c_6_result_1_proc).
has_representation(trial_on_rich_globalmaxod_ynr073c_6_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ynr073c_6_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_ynr073c_6_result,trial_on_rich_globalmaxod_ynr073c_6_result_2).
has_representation(trial_on_rich_globalmaxod_ynr073c_6_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_ynr073c_6_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ynr073c_6_result_2,trial_on_rich_globalmaxod_ynr073c_6_result_2_proc).
procedure(trial_on_rich_globalmaxod_ynr073c_6_result_2_proc).
has_representation(trial_on_rich_globalmaxod_ynr073c_6_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ynr073c_6_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_ynr073c,trial_on_rich_globalmaxod_ynr073c_results).
result(trial_on_rich_globalmaxod_ynr073c_results).
has_part(trial_on_rich_globalmaxod_ynr073c_results,trial_on_rich_globalmaxod_ynr073c_results_1).
has_representation(trial_on_rich_globalmaxod_ynr073c_results_1,'median of knockout medians missing ynr073c').
text_representation('median of knockout medians missing ynr073c').
has_proposition(trial_on_rich_globalmaxod_ynr073c_results_1,trial_on_rich_globalmaxod_ynr073c_results_1_proc).
procedure(trial_on_rich_globalmaxod_ynr073c_results_1_proc).
has_proposition(trial_on_rich_globalmaxod_ynr073c_results_1_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_rich_globalmaxod_ynr073c_results,trial_on_rich_globalmaxod_ynr073c_results_2).
has_representation(trial_on_rich_globalmaxod_ynr073c_results_2,'median of wild type medians').
text_representation('median of wild type medians').
has_proposition(trial_on_rich_globalmaxod_ynr073c_results_2,trial_on_rich_globalmaxod_ynr073c_results_2_proc).
procedure(trial_on_rich_globalmaxod_ynr073c_results_2_proc).
has_proposition(trial_on_rich_globalmaxod_ynr073c_results_2_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_rich_globalmaxod_ynr073c_results,trial_on_rich_globalmaxod_ynr073c_results_3).
has_representation(trial_on_rich_globalmaxod_ynr073c_results_3,'difference between trial_on_rich_globalmaxod_ynr073c_results_1 and trial_on_rich_globalmaxod_ynr073c_results_2').
text_representation('difference between trial_on_rich_globalmaxod_ynr073c_results_1 and trial_on_rich_globalmaxod_ynr073c_results_2').
has_proposition(study_on_rich_globalmaxod,study_on_rich_globalmaxod_result).
result(study_on_rich_globalmaxod_result).
has_part(study_on_rich_globalmaxod_result,study_on_rich_globalmaxod_result_1).
has_representation(study_on_rich_globalmaxod_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_rich_globalmaxod_result_1,'results/wr_kr_global_max_od.csv').
link('results/wr_kr_global_max_od.csv').
has_proposition(study_on_rich_globalmaxod_result_1,study_on_rich_globalmaxod_result_1_proc).
procedure(study_on_rich_globalmaxod_result_1_proc).
has_proposition(study_on_rich_globalmaxod_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_rich_globalmaxod_result,study_on_rich_globalmaxod_result_2).
has_representation(study_on_rich_globalmaxod_result_2,'bar graph (histogram) plotting study_on_rich_globalmaxod_result_1').
text_representation('bar graph (histogram) plotting study_on_rich_globalmaxod_result_1').
has_proposition(study_on_rich_globalmaxod_result_2,'results/overlayed_global_max_od0.8.tiff').
link('results/overlayed_global_max_od0.8.tiff').
has_proposition(study_on_rich_globalmaxod_result_2,study_on_rich_globalmaxod_result_2_proc).
procedure(study_on_rich_globalmaxod_result_2_proc).
has_proposition(study_on_rich_globalmaxod_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_rich_globalmaxod,study_on_rich_globalmaxod_conclusion).
conclusion(study_on_rich_globalmaxod_conclusion).
has_representation(study_on_rich_globalmaxod_conclusion,'The knockouts reach a lower global_max_od in rich than the wild type').
text_representation('The knockouts reach a lower global_max_od in rich than the wild type').
has_proposition(study_on_rich_globalmaxod_conclusion,'obtain statistical mode of study_on_rich_globalmaxod_result_1').
procedure('obtain statistical mode of study_on_rich_globalmaxod_result_1').
text_representation('obtain statistical mode of study_on_rich_globalmaxod_result_1').
has_part(study_on_rich_globalmaxod,trial_on_rich_globalmaxod_yer152c).
trial(trial_on_rich_globalmaxod_yer152c).
has_agent(trial_on_rich_globalmaxod_yer152c,yer152c).
strain(yer152c).
has_proposition(trial_on_rich_globalmaxod_yer152c_1,trial_on_rich_globalmaxod_yer152c_1_design).
design(trial_on_rich_globalmaxod_yer152c_1_design).
has_proposition(trial_on_rich_globalmaxod_yer152c_1_design,trial_on_rich_globalmaxod_yer152c_1_factor).
factor(trial_on_rich_globalmaxod_yer152c_1_factor).
has_representation(trial_on_rich_globalmaxod_yer152c_1_factor,'presence or absence of yer152c').
has_input(trial_on_rich_globalmaxod_yer152c_1,trial_on_rich_globalmaxod_yer152c_1_data).
data(trial_on_rich_globalmaxod_yer152c_1_data).
has_part(trial_on_rich_globalmaxod_yer152c_1_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_yer152c_1_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_yer152c_1_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_yer152c_1,'jan07-lyss1_expt001-plate007').
plate('jan07-lyss1_expt001-plate007').
has_proposition(trial_on_rich_globalmaxod_yer152c_1,trial_on_rich_globalmaxod_yer152c_1_result).
result(trial_on_rich_globalmaxod_yer152c_1_result).
has_part(trial_on_rich_globalmaxod_yer152c_1_result,trial_on_rich_globalmaxod_yer152c_1_result_1).
has_representation(trial_on_rich_globalmaxod_yer152c_1_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_yer152c_1_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_yer152c_1_result_1,trial_on_rich_globalmaxod_yer152c_1_result_1_proc).
procedure(trial_on_rich_globalmaxod_yer152c_1_result_1_proc).
has_representation(trial_on_rich_globalmaxod_yer152c_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_yer152c_1_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_yer152c_1_result,trial_on_rich_globalmaxod_yer152c_1_result_2).
has_representation(trial_on_rich_globalmaxod_yer152c_1_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_yer152c_1_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_yer152c_1_result_2,trial_on_rich_globalmaxod_yer152c_1_result_2_proc).
procedure(trial_on_rich_globalmaxod_yer152c_1_result_2_proc).
has_representation(trial_on_rich_globalmaxod_yer152c_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_yer152c_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_yer152c_2,trial_on_rich_globalmaxod_yer152c_2_design).
design(trial_on_rich_globalmaxod_yer152c_2_design).
has_proposition(trial_on_rich_globalmaxod_yer152c_2_design,trial_on_rich_globalmaxod_yer152c_2_factor).
factor(trial_on_rich_globalmaxod_yer152c_2_factor).
has_representation(trial_on_rich_globalmaxod_yer152c_2_factor,'presence or absence of yer152c').
has_input(trial_on_rich_globalmaxod_yer152c_2,trial_on_rich_globalmaxod_yer152c_2_data).
data(trial_on_rich_globalmaxod_yer152c_2_data).
has_part(trial_on_rich_globalmaxod_yer152c_2_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_yer152c_2_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_yer152c_2_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_yer152c_2,'jan07-lyss1_expt001-plate008').
plate('jan07-lyss1_expt001-plate008').
has_proposition(trial_on_rich_globalmaxod_yer152c_2,trial_on_rich_globalmaxod_yer152c_2_result).
result(trial_on_rich_globalmaxod_yer152c_2_result).
has_part(trial_on_rich_globalmaxod_yer152c_2_result,trial_on_rich_globalmaxod_yer152c_2_result_1).
has_representation(trial_on_rich_globalmaxod_yer152c_2_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_yer152c_2_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_yer152c_2_result_1,trial_on_rich_globalmaxod_yer152c_2_result_1_proc).
procedure(trial_on_rich_globalmaxod_yer152c_2_result_1_proc).
has_representation(trial_on_rich_globalmaxod_yer152c_2_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_yer152c_2_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_yer152c_2_result,trial_on_rich_globalmaxod_yer152c_2_result_2).
has_representation(trial_on_rich_globalmaxod_yer152c_2_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_yer152c_2_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_yer152c_2_result_2,trial_on_rich_globalmaxod_yer152c_2_result_2_proc).
procedure(trial_on_rich_globalmaxod_yer152c_2_result_2_proc).
has_representation(trial_on_rich_globalmaxod_yer152c_2_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_yer152c_2_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_yer152c_3,trial_on_rich_globalmaxod_yer152c_3_design).
design(trial_on_rich_globalmaxod_yer152c_3_design).
has_proposition(trial_on_rich_globalmaxod_yer152c_3_design,trial_on_rich_globalmaxod_yer152c_3_factor).
factor(trial_on_rich_globalmaxod_yer152c_3_factor).
has_representation(trial_on_rich_globalmaxod_yer152c_3_factor,'presence or absence of yer152c').
has_input(trial_on_rich_globalmaxod_yer152c_3,trial_on_rich_globalmaxod_yer152c_3_data).
data(trial_on_rich_globalmaxod_yer152c_3_data).
has_part(trial_on_rich_globalmaxod_yer152c_3_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_yer152c_3_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_yer152c_3_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_yer152c_3,'jan07-lyss1_expt001-plate009').
plate('jan07-lyss1_expt001-plate009').
has_proposition(trial_on_rich_globalmaxod_yer152c_3,trial_on_rich_globalmaxod_yer152c_3_result).
result(trial_on_rich_globalmaxod_yer152c_3_result).
has_part(trial_on_rich_globalmaxod_yer152c_3_result,trial_on_rich_globalmaxod_yer152c_3_result_1).
has_representation(trial_on_rich_globalmaxod_yer152c_3_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_yer152c_3_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_yer152c_3_result_1,trial_on_rich_globalmaxod_yer152c_3_result_1_proc).
procedure(trial_on_rich_globalmaxod_yer152c_3_result_1_proc).
has_representation(trial_on_rich_globalmaxod_yer152c_3_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_yer152c_3_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_yer152c_3_result,trial_on_rich_globalmaxod_yer152c_3_result_2).
has_representation(trial_on_rich_globalmaxod_yer152c_3_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_yer152c_3_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_yer152c_3_result_2,trial_on_rich_globalmaxod_yer152c_3_result_2_proc).
procedure(trial_on_rich_globalmaxod_yer152c_3_result_2_proc).
has_representation(trial_on_rich_globalmaxod_yer152c_3_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_yer152c_3_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_yer152c,trial_on_rich_globalmaxod_yer152c_results).
result(trial_on_rich_globalmaxod_yer152c_results).
has_part(trial_on_rich_globalmaxod_yer152c_results,trial_on_rich_globalmaxod_yer152c_results_1).
has_representation(trial_on_rich_globalmaxod_yer152c_results_1,'median of knockout medians missing yer152c').
text_representation('median of knockout medians missing yer152c').
has_proposition(trial_on_rich_globalmaxod_yer152c_results_1,trial_on_rich_globalmaxod_yer152c_results_1_proc).
procedure(trial_on_rich_globalmaxod_yer152c_results_1_proc).
has_proposition(trial_on_rich_globalmaxod_yer152c_results_1_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_rich_globalmaxod_yer152c_results,trial_on_rich_globalmaxod_yer152c_results_2).
has_representation(trial_on_rich_globalmaxod_yer152c_results_2,'median of wild type medians').
text_representation('median of wild type medians').
has_proposition(trial_on_rich_globalmaxod_yer152c_results_2,trial_on_rich_globalmaxod_yer152c_results_2_proc).
procedure(trial_on_rich_globalmaxod_yer152c_results_2_proc).
has_proposition(trial_on_rich_globalmaxod_yer152c_results_2_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_rich_globalmaxod_yer152c_results,trial_on_rich_globalmaxod_yer152c_results_3).
has_representation(trial_on_rich_globalmaxod_yer152c_results_3,'difference between trial_on_rich_globalmaxod_yer152c_results_1 and trial_on_rich_globalmaxod_yer152c_results_2').
text_representation('difference between trial_on_rich_globalmaxod_yer152c_results_1 and trial_on_rich_globalmaxod_yer152c_results_2').
has_proposition(study_on_rich_globalmaxod,study_on_rich_globalmaxod_result).
result(study_on_rich_globalmaxod_result).
has_part(study_on_rich_globalmaxod_result,study_on_rich_globalmaxod_result_1).
has_representation(study_on_rich_globalmaxod_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_rich_globalmaxod_result_1,'results/wr_kr_global_max_od.csv').
link('results/wr_kr_global_max_od.csv').
has_proposition(study_on_rich_globalmaxod_result_1,study_on_rich_globalmaxod_result_1_proc).
procedure(study_on_rich_globalmaxod_result_1_proc).
has_proposition(study_on_rich_globalmaxod_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_rich_globalmaxod_result,study_on_rich_globalmaxod_result_2).
has_representation(study_on_rich_globalmaxod_result_2,'bar graph (histogram) plotting study_on_rich_globalmaxod_result_1').
text_representation('bar graph (histogram) plotting study_on_rich_globalmaxod_result_1').
has_proposition(study_on_rich_globalmaxod_result_2,'results/overlayed_global_max_od0.8.tiff').
link('results/overlayed_global_max_od0.8.tiff').
has_proposition(study_on_rich_globalmaxod_result_2,study_on_rich_globalmaxod_result_2_proc).
procedure(study_on_rich_globalmaxod_result_2_proc).
has_proposition(study_on_rich_globalmaxod_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_rich_globalmaxod,study_on_rich_globalmaxod_conclusion).
conclusion(study_on_rich_globalmaxod_conclusion).
has_representation(study_on_rich_globalmaxod_conclusion,'The knockouts reach a lower global_max_od in rich than the wild type').
text_representation('The knockouts reach a lower global_max_od in rich than the wild type').
has_proposition(study_on_rich_globalmaxod_conclusion,'obtain statistical mode of study_on_rich_globalmaxod_result_1').
procedure('obtain statistical mode of study_on_rich_globalmaxod_result_1').
text_representation('obtain statistical mode of study_on_rich_globalmaxod_result_1').
has_part(study_on_rich_globalmaxod,trial_on_rich_globalmaxod_rsyd000001).
trial(trial_on_rich_globalmaxod_rsyd000001).
has_agent(trial_on_rich_globalmaxod_rsyd000001,rsyd000001).
strain(rsyd000001).
has_proposition(trial_on_rich_globalmaxod_rsyd000001_1,trial_on_rich_globalmaxod_rsyd000001_1_design).
design(trial_on_rich_globalmaxod_rsyd000001_1_design).
has_proposition(trial_on_rich_globalmaxod_rsyd000001_1_design,trial_on_rich_globalmaxod_rsyd000001_1_factor).
factor(trial_on_rich_globalmaxod_rsyd000001_1_factor).
has_representation(trial_on_rich_globalmaxod_rsyd000001_1_factor,'presence or absence of rsyd000001').
has_input(trial_on_rich_globalmaxod_rsyd000001_1,trial_on_rich_globalmaxod_rsyd000001_1_data).
data(trial_on_rich_globalmaxod_rsyd000001_1_data).
has_part(trial_on_rich_globalmaxod_rsyd000001_1_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_rsyd000001_1_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_rsyd000001_1_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_rsyd000001_1,'jan07-lysd1_expt001-plate004').
plate('jan07-lysd1_expt001-plate004').
has_proposition(trial_on_rich_globalmaxod_rsyd000001_1,trial_on_rich_globalmaxod_rsyd000001_1_result).
result(trial_on_rich_globalmaxod_rsyd000001_1_result).
has_part(trial_on_rich_globalmaxod_rsyd000001_1_result,trial_on_rich_globalmaxod_rsyd000001_1_result_1).
has_representation(trial_on_rich_globalmaxod_rsyd000001_1_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_rsyd000001_1_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_rsyd000001_1_result_1,trial_on_rich_globalmaxod_rsyd000001_1_result_1_proc).
procedure(trial_on_rich_globalmaxod_rsyd000001_1_result_1_proc).
has_representation(trial_on_rich_globalmaxod_rsyd000001_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_rsyd000001_1_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_rsyd000001_1_result,trial_on_rich_globalmaxod_rsyd000001_1_result_2).
has_representation(trial_on_rich_globalmaxod_rsyd000001_1_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_rsyd000001_1_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_rsyd000001_1_result_2,trial_on_rich_globalmaxod_rsyd000001_1_result_2_proc).
procedure(trial_on_rich_globalmaxod_rsyd000001_1_result_2_proc).
has_representation(trial_on_rich_globalmaxod_rsyd000001_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_rsyd000001_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_rsyd000001_2,trial_on_rich_globalmaxod_rsyd000001_2_design).
design(trial_on_rich_globalmaxod_rsyd000001_2_design).
has_proposition(trial_on_rich_globalmaxod_rsyd000001_2_design,trial_on_rich_globalmaxod_rsyd000001_2_factor).
factor(trial_on_rich_globalmaxod_rsyd000001_2_factor).
has_representation(trial_on_rich_globalmaxod_rsyd000001_2_factor,'presence or absence of rsyd000001').
has_input(trial_on_rich_globalmaxod_rsyd000001_2,trial_on_rich_globalmaxod_rsyd000001_2_data).
data(trial_on_rich_globalmaxod_rsyd000001_2_data).
has_part(trial_on_rich_globalmaxod_rsyd000001_2_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_rsyd000001_2_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_rsyd000001_2_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_rsyd000001_2,'jan07-lysd1_expt001-plate005').
plate('jan07-lysd1_expt001-plate005').
has_proposition(trial_on_rich_globalmaxod_rsyd000001_2,trial_on_rich_globalmaxod_rsyd000001_2_result).
result(trial_on_rich_globalmaxod_rsyd000001_2_result).
has_part(trial_on_rich_globalmaxod_rsyd000001_2_result,trial_on_rich_globalmaxod_rsyd000001_2_result_1).
has_representation(trial_on_rich_globalmaxod_rsyd000001_2_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_rsyd000001_2_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_rsyd000001_2_result_1,trial_on_rich_globalmaxod_rsyd000001_2_result_1_proc).
procedure(trial_on_rich_globalmaxod_rsyd000001_2_result_1_proc).
has_representation(trial_on_rich_globalmaxod_rsyd000001_2_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_rsyd000001_2_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_rsyd000001_2_result,trial_on_rich_globalmaxod_rsyd000001_2_result_2).
has_representation(trial_on_rich_globalmaxod_rsyd000001_2_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_rsyd000001_2_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_rsyd000001_2_result_2,trial_on_rich_globalmaxod_rsyd000001_2_result_2_proc).
procedure(trial_on_rich_globalmaxod_rsyd000001_2_result_2_proc).
has_representation(trial_on_rich_globalmaxod_rsyd000001_2_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_rsyd000001_2_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_rsyd000001_3,trial_on_rich_globalmaxod_rsyd000001_3_design).
design(trial_on_rich_globalmaxod_rsyd000001_3_design).
has_proposition(trial_on_rich_globalmaxod_rsyd000001_3_design,trial_on_rich_globalmaxod_rsyd000001_3_factor).
factor(trial_on_rich_globalmaxod_rsyd000001_3_factor).
has_representation(trial_on_rich_globalmaxod_rsyd000001_3_factor,'presence or absence of rsyd000001').
has_input(trial_on_rich_globalmaxod_rsyd000001_3,trial_on_rich_globalmaxod_rsyd000001_3_data).
data(trial_on_rich_globalmaxod_rsyd000001_3_data).
has_part(trial_on_rich_globalmaxod_rsyd000001_3_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_rsyd000001_3_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_rsyd000001_3_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_rsyd000001_3,'jan07-lysd1_expt001-plate006').
plate('jan07-lysd1_expt001-plate006').
has_proposition(trial_on_rich_globalmaxod_rsyd000001_3,trial_on_rich_globalmaxod_rsyd000001_3_result).
result(trial_on_rich_globalmaxod_rsyd000001_3_result).
has_part(trial_on_rich_globalmaxod_rsyd000001_3_result,trial_on_rich_globalmaxod_rsyd000001_3_result_1).
has_representation(trial_on_rich_globalmaxod_rsyd000001_3_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_rsyd000001_3_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_rsyd000001_3_result_1,trial_on_rich_globalmaxod_rsyd000001_3_result_1_proc).
procedure(trial_on_rich_globalmaxod_rsyd000001_3_result_1_proc).
has_representation(trial_on_rich_globalmaxod_rsyd000001_3_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_rsyd000001_3_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_rsyd000001_3_result,trial_on_rich_globalmaxod_rsyd000001_3_result_2).
has_representation(trial_on_rich_globalmaxod_rsyd000001_3_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_rsyd000001_3_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_rsyd000001_3_result_2,trial_on_rich_globalmaxod_rsyd000001_3_result_2_proc).
procedure(trial_on_rich_globalmaxod_rsyd000001_3_result_2_proc).
has_representation(trial_on_rich_globalmaxod_rsyd000001_3_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_rsyd000001_3_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_rsyd000001,trial_on_rich_globalmaxod_rsyd000001_results).
result(trial_on_rich_globalmaxod_rsyd000001_results).
has_part(trial_on_rich_globalmaxod_rsyd000001_results,trial_on_rich_globalmaxod_rsyd000001_results_1).
has_representation(trial_on_rich_globalmaxod_rsyd000001_results_1,'median of knockout medians missing rsyd000001').
text_representation('median of knockout medians missing rsyd000001').
has_proposition(trial_on_rich_globalmaxod_rsyd000001_results_1,trial_on_rich_globalmaxod_rsyd000001_results_1_proc).
procedure(trial_on_rich_globalmaxod_rsyd000001_results_1_proc).
has_proposition(trial_on_rich_globalmaxod_rsyd000001_results_1_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_rich_globalmaxod_rsyd000001_results,trial_on_rich_globalmaxod_rsyd000001_results_2).
has_representation(trial_on_rich_globalmaxod_rsyd000001_results_2,'median of wild type medians').
text_representation('median of wild type medians').
has_proposition(trial_on_rich_globalmaxod_rsyd000001_results_2,trial_on_rich_globalmaxod_rsyd000001_results_2_proc).
procedure(trial_on_rich_globalmaxod_rsyd000001_results_2_proc).
has_proposition(trial_on_rich_globalmaxod_rsyd000001_results_2_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_rich_globalmaxod_rsyd000001_results,trial_on_rich_globalmaxod_rsyd000001_results_3).
has_representation(trial_on_rich_globalmaxod_rsyd000001_results_3,'difference between trial_on_rich_globalmaxod_rsyd000001_results_1 and trial_on_rich_globalmaxod_rsyd000001_results_2').
text_representation('difference between trial_on_rich_globalmaxod_rsyd000001_results_1 and trial_on_rich_globalmaxod_rsyd000001_results_2').
has_proposition(study_on_rich_globalmaxod,study_on_rich_globalmaxod_result).
result(study_on_rich_globalmaxod_result).
has_part(study_on_rich_globalmaxod_result,study_on_rich_globalmaxod_result_1).
has_representation(study_on_rich_globalmaxod_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_rich_globalmaxod_result_1,'results/wr_kr_global_max_od.csv').
link('results/wr_kr_global_max_od.csv').
has_proposition(study_on_rich_globalmaxod_result_1,study_on_rich_globalmaxod_result_1_proc).
procedure(study_on_rich_globalmaxod_result_1_proc).
has_proposition(study_on_rich_globalmaxod_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_rich_globalmaxod_result,study_on_rich_globalmaxod_result_2).
has_representation(study_on_rich_globalmaxod_result_2,'bar graph (histogram) plotting study_on_rich_globalmaxod_result_1').
text_representation('bar graph (histogram) plotting study_on_rich_globalmaxod_result_1').
has_proposition(study_on_rich_globalmaxod_result_2,'results/overlayed_global_max_od0.8.tiff').
link('results/overlayed_global_max_od0.8.tiff').
has_proposition(study_on_rich_globalmaxod_result_2,study_on_rich_globalmaxod_result_2_proc).
procedure(study_on_rich_globalmaxod_result_2_proc).
has_proposition(study_on_rich_globalmaxod_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_rich_globalmaxod,study_on_rich_globalmaxod_conclusion).
conclusion(study_on_rich_globalmaxod_conclusion).
has_representation(study_on_rich_globalmaxod_conclusion,'The knockouts reach a lower global_max_od in rich than the wild type').
text_representation('The knockouts reach a lower global_max_od in rich than the wild type').
has_proposition(study_on_rich_globalmaxod_conclusion,'obtain statistical mode of study_on_rich_globalmaxod_result_1').
procedure('obtain statistical mode of study_on_rich_globalmaxod_result_1').
text_representation('obtain statistical mode of study_on_rich_globalmaxod_result_1').
has_part(study_on_rich_globalmaxod,trial_on_rich_globalmaxod_rsyd000003).
trial(trial_on_rich_globalmaxod_rsyd000003).
has_agent(trial_on_rich_globalmaxod_rsyd000003,rsyd000003).
strain(rsyd000003).
has_proposition(trial_on_rich_globalmaxod_rsyd000003_1,trial_on_rich_globalmaxod_rsyd000003_1_design).
design(trial_on_rich_globalmaxod_rsyd000003_1_design).
has_proposition(trial_on_rich_globalmaxod_rsyd000003_1_design,trial_on_rich_globalmaxod_rsyd000003_1_factor).
factor(trial_on_rich_globalmaxod_rsyd000003_1_factor).
has_representation(trial_on_rich_globalmaxod_rsyd000003_1_factor,'presence or absence of rsyd000003').
has_input(trial_on_rich_globalmaxod_rsyd000003_1,trial_on_rich_globalmaxod_rsyd000003_1_data).
data(trial_on_rich_globalmaxod_rsyd000003_1_data).
has_part(trial_on_rich_globalmaxod_rsyd000003_1_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_rsyd000003_1_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_rsyd000003_1_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_rsyd000003_1,'jan07-lysd1_expt001-plate001').
plate('jan07-lysd1_expt001-plate001').
has_proposition(trial_on_rich_globalmaxod_rsyd000003_1,trial_on_rich_globalmaxod_rsyd000003_1_result).
result(trial_on_rich_globalmaxod_rsyd000003_1_result).
has_part(trial_on_rich_globalmaxod_rsyd000003_1_result,trial_on_rich_globalmaxod_rsyd000003_1_result_1).
has_representation(trial_on_rich_globalmaxod_rsyd000003_1_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_rsyd000003_1_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_rsyd000003_1_result_1,trial_on_rich_globalmaxod_rsyd000003_1_result_1_proc).
procedure(trial_on_rich_globalmaxod_rsyd000003_1_result_1_proc).
has_representation(trial_on_rich_globalmaxod_rsyd000003_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_rsyd000003_1_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_rsyd000003_1_result,trial_on_rich_globalmaxod_rsyd000003_1_result_2).
has_representation(trial_on_rich_globalmaxod_rsyd000003_1_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_rsyd000003_1_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_rsyd000003_1_result_2,trial_on_rich_globalmaxod_rsyd000003_1_result_2_proc).
procedure(trial_on_rich_globalmaxod_rsyd000003_1_result_2_proc).
has_representation(trial_on_rich_globalmaxod_rsyd000003_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_rsyd000003_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_rsyd000003_2,trial_on_rich_globalmaxod_rsyd000003_2_design).
design(trial_on_rich_globalmaxod_rsyd000003_2_design).
has_proposition(trial_on_rich_globalmaxod_rsyd000003_2_design,trial_on_rich_globalmaxod_rsyd000003_2_factor).
factor(trial_on_rich_globalmaxod_rsyd000003_2_factor).
has_representation(trial_on_rich_globalmaxod_rsyd000003_2_factor,'presence or absence of rsyd000003').
has_input(trial_on_rich_globalmaxod_rsyd000003_2,trial_on_rich_globalmaxod_rsyd000003_2_data).
data(trial_on_rich_globalmaxod_rsyd000003_2_data).
has_part(trial_on_rich_globalmaxod_rsyd000003_2_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_rsyd000003_2_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_rsyd000003_2_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_rsyd000003_2,'jan07-lysd1_expt001-plate002').
plate('jan07-lysd1_expt001-plate002').
has_proposition(trial_on_rich_globalmaxod_rsyd000003_2,trial_on_rich_globalmaxod_rsyd000003_2_result).
result(trial_on_rich_globalmaxod_rsyd000003_2_result).
has_part(trial_on_rich_globalmaxod_rsyd000003_2_result,trial_on_rich_globalmaxod_rsyd000003_2_result_1).
has_representation(trial_on_rich_globalmaxod_rsyd000003_2_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_rsyd000003_2_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_rsyd000003_2_result_1,trial_on_rich_globalmaxod_rsyd000003_2_result_1_proc).
procedure(trial_on_rich_globalmaxod_rsyd000003_2_result_1_proc).
has_representation(trial_on_rich_globalmaxod_rsyd000003_2_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_rsyd000003_2_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_rsyd000003_2_result,trial_on_rich_globalmaxod_rsyd000003_2_result_2).
has_representation(trial_on_rich_globalmaxod_rsyd000003_2_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_rsyd000003_2_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_rsyd000003_2_result_2,trial_on_rich_globalmaxod_rsyd000003_2_result_2_proc).
procedure(trial_on_rich_globalmaxod_rsyd000003_2_result_2_proc).
has_representation(trial_on_rich_globalmaxod_rsyd000003_2_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_rsyd000003_2_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_rsyd000003_3,trial_on_rich_globalmaxod_rsyd000003_3_design).
design(trial_on_rich_globalmaxod_rsyd000003_3_design).
has_proposition(trial_on_rich_globalmaxod_rsyd000003_3_design,trial_on_rich_globalmaxod_rsyd000003_3_factor).
factor(trial_on_rich_globalmaxod_rsyd000003_3_factor).
has_representation(trial_on_rich_globalmaxod_rsyd000003_3_factor,'presence or absence of rsyd000003').
has_input(trial_on_rich_globalmaxod_rsyd000003_3,trial_on_rich_globalmaxod_rsyd000003_3_data).
data(trial_on_rich_globalmaxod_rsyd000003_3_data).
has_part(trial_on_rich_globalmaxod_rsyd000003_3_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_rsyd000003_3_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_rsyd000003_3_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_rsyd000003_3,'jan07-lysd1_expt001-plate003').
plate('jan07-lysd1_expt001-plate003').
has_proposition(trial_on_rich_globalmaxod_rsyd000003_3,trial_on_rich_globalmaxod_rsyd000003_3_result).
result(trial_on_rich_globalmaxod_rsyd000003_3_result).
has_part(trial_on_rich_globalmaxod_rsyd000003_3_result,trial_on_rich_globalmaxod_rsyd000003_3_result_1).
has_representation(trial_on_rich_globalmaxod_rsyd000003_3_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_rsyd000003_3_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_rsyd000003_3_result_1,trial_on_rich_globalmaxod_rsyd000003_3_result_1_proc).
procedure(trial_on_rich_globalmaxod_rsyd000003_3_result_1_proc).
has_representation(trial_on_rich_globalmaxod_rsyd000003_3_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_rsyd000003_3_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_rsyd000003_3_result,trial_on_rich_globalmaxod_rsyd000003_3_result_2).
has_representation(trial_on_rich_globalmaxod_rsyd000003_3_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_rsyd000003_3_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_rsyd000003_3_result_2,trial_on_rich_globalmaxod_rsyd000003_3_result_2_proc).
procedure(trial_on_rich_globalmaxod_rsyd000003_3_result_2_proc).
has_representation(trial_on_rich_globalmaxod_rsyd000003_3_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_rsyd000003_3_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_rsyd000003,trial_on_rich_globalmaxod_rsyd000003_results).
result(trial_on_rich_globalmaxod_rsyd000003_results).
has_part(trial_on_rich_globalmaxod_rsyd000003_results,trial_on_rich_globalmaxod_rsyd000003_results_1).
has_representation(trial_on_rich_globalmaxod_rsyd000003_results_1,'median of knockout medians missing rsyd000003').
text_representation('median of knockout medians missing rsyd000003').
has_proposition(trial_on_rich_globalmaxod_rsyd000003_results_1,trial_on_rich_globalmaxod_rsyd000003_results_1_proc).
procedure(trial_on_rich_globalmaxod_rsyd000003_results_1_proc).
has_proposition(trial_on_rich_globalmaxod_rsyd000003_results_1_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_rich_globalmaxod_rsyd000003_results,trial_on_rich_globalmaxod_rsyd000003_results_2).
has_representation(trial_on_rich_globalmaxod_rsyd000003_results_2,'median of wild type medians').
text_representation('median of wild type medians').
has_proposition(trial_on_rich_globalmaxod_rsyd000003_results_2,trial_on_rich_globalmaxod_rsyd000003_results_2_proc).
procedure(trial_on_rich_globalmaxod_rsyd000003_results_2_proc).
has_proposition(trial_on_rich_globalmaxod_rsyd000003_results_2_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_rich_globalmaxod_rsyd000003_results,trial_on_rich_globalmaxod_rsyd000003_results_3).
has_representation(trial_on_rich_globalmaxod_rsyd000003_results_3,'difference between trial_on_rich_globalmaxod_rsyd000003_results_1 and trial_on_rich_globalmaxod_rsyd000003_results_2').
text_representation('difference between trial_on_rich_globalmaxod_rsyd000003_results_1 and trial_on_rich_globalmaxod_rsyd000003_results_2').
has_proposition(study_on_rich_globalmaxod,study_on_rich_globalmaxod_result).
result(study_on_rich_globalmaxod_result).
has_part(study_on_rich_globalmaxod_result,study_on_rich_globalmaxod_result_1).
has_representation(study_on_rich_globalmaxod_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_rich_globalmaxod_result_1,'results/wr_kr_global_max_od.csv').
link('results/wr_kr_global_max_od.csv').
has_proposition(study_on_rich_globalmaxod_result_1,study_on_rich_globalmaxod_result_1_proc).
procedure(study_on_rich_globalmaxod_result_1_proc).
has_proposition(study_on_rich_globalmaxod_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_rich_globalmaxod_result,study_on_rich_globalmaxod_result_2).
has_representation(study_on_rich_globalmaxod_result_2,'bar graph (histogram) plotting study_on_rich_globalmaxod_result_1').
text_representation('bar graph (histogram) plotting study_on_rich_globalmaxod_result_1').
has_proposition(study_on_rich_globalmaxod_result_2,'results/overlayed_global_max_od0.8.tiff').
link('results/overlayed_global_max_od0.8.tiff').
has_proposition(study_on_rich_globalmaxod_result_2,study_on_rich_globalmaxod_result_2_proc).
procedure(study_on_rich_globalmaxod_result_2_proc).
has_proposition(study_on_rich_globalmaxod_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_rich_globalmaxod,study_on_rich_globalmaxod_conclusion).
conclusion(study_on_rich_globalmaxod_conclusion).
has_representation(study_on_rich_globalmaxod_conclusion,'The knockouts reach a lower global_max_od in rich than the wild type').
text_representation('The knockouts reach a lower global_max_od in rich than the wild type').
has_proposition(study_on_rich_globalmaxod_conclusion,'obtain statistical mode of study_on_rich_globalmaxod_result_1').
procedure('obtain statistical mode of study_on_rich_globalmaxod_result_1').
text_representation('obtain statistical mode of study_on_rich_globalmaxod_result_1').
has_part(study_on_rich_globalmaxod,trial_on_rich_globalmaxod_ynr034w).
trial(trial_on_rich_globalmaxod_ynr034w).
has_agent(trial_on_rich_globalmaxod_ynr034w,ynr034w).
strain(ynr034w).
has_proposition(trial_on_rich_globalmaxod_ynr034w_1,trial_on_rich_globalmaxod_ynr034w_1_design).
design(trial_on_rich_globalmaxod_ynr034w_1_design).
has_proposition(trial_on_rich_globalmaxod_ynr034w_1_design,trial_on_rich_globalmaxod_ynr034w_1_factor).
factor(trial_on_rich_globalmaxod_ynr034w_1_factor).
has_representation(trial_on_rich_globalmaxod_ynr034w_1_factor,'presence or absence of ynr034w').
has_input(trial_on_rich_globalmaxod_ynr034w_1,trial_on_rich_globalmaxod_ynr034w_1_data).
data(trial_on_rich_globalmaxod_ynr034w_1_data).
has_part(trial_on_rich_globalmaxod_ynr034w_1_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_ynr034w_1_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_ynr034w_1_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_ynr034w_1,'feb07-trial1_expt001-plate006').
plate('feb07-trial1_expt001-plate006').
has_proposition(trial_on_rich_globalmaxod_ynr034w_1,trial_on_rich_globalmaxod_ynr034w_1_result).
result(trial_on_rich_globalmaxod_ynr034w_1_result).
has_part(trial_on_rich_globalmaxod_ynr034w_1_result,trial_on_rich_globalmaxod_ynr034w_1_result_1).
has_representation(trial_on_rich_globalmaxod_ynr034w_1_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_ynr034w_1_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ynr034w_1_result_1,trial_on_rich_globalmaxod_ynr034w_1_result_1_proc).
procedure(trial_on_rich_globalmaxod_ynr034w_1_result_1_proc).
has_representation(trial_on_rich_globalmaxod_ynr034w_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ynr034w_1_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_ynr034w_1_result,trial_on_rich_globalmaxod_ynr034w_1_result_2).
has_representation(trial_on_rich_globalmaxod_ynr034w_1_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_ynr034w_1_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ynr034w_1_result_2,trial_on_rich_globalmaxod_ynr034w_1_result_2_proc).
procedure(trial_on_rich_globalmaxod_ynr034w_1_result_2_proc).
has_representation(trial_on_rich_globalmaxod_ynr034w_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ynr034w_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_ynr034w_2,trial_on_rich_globalmaxod_ynr034w_2_design).
design(trial_on_rich_globalmaxod_ynr034w_2_design).
has_proposition(trial_on_rich_globalmaxod_ynr034w_2_design,trial_on_rich_globalmaxod_ynr034w_2_factor).
factor(trial_on_rich_globalmaxod_ynr034w_2_factor).
has_representation(trial_on_rich_globalmaxod_ynr034w_2_factor,'presence or absence of ynr034w').
has_input(trial_on_rich_globalmaxod_ynr034w_2,trial_on_rich_globalmaxod_ynr034w_2_data).
data(trial_on_rich_globalmaxod_ynr034w_2_data).
has_part(trial_on_rich_globalmaxod_ynr034w_2_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_ynr034w_2_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_ynr034w_2_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_ynr034w_2,'feb07-trial1_expt001-plate007').
plate('feb07-trial1_expt001-plate007').
has_proposition(trial_on_rich_globalmaxod_ynr034w_2,trial_on_rich_globalmaxod_ynr034w_2_result).
result(trial_on_rich_globalmaxod_ynr034w_2_result).
has_part(trial_on_rich_globalmaxod_ynr034w_2_result,trial_on_rich_globalmaxod_ynr034w_2_result_1).
has_representation(trial_on_rich_globalmaxod_ynr034w_2_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_ynr034w_2_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ynr034w_2_result_1,trial_on_rich_globalmaxod_ynr034w_2_result_1_proc).
procedure(trial_on_rich_globalmaxod_ynr034w_2_result_1_proc).
has_representation(trial_on_rich_globalmaxod_ynr034w_2_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ynr034w_2_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_ynr034w_2_result,trial_on_rich_globalmaxod_ynr034w_2_result_2).
has_representation(trial_on_rich_globalmaxod_ynr034w_2_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_ynr034w_2_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ynr034w_2_result_2,trial_on_rich_globalmaxod_ynr034w_2_result_2_proc).
procedure(trial_on_rich_globalmaxod_ynr034w_2_result_2_proc).
has_representation(trial_on_rich_globalmaxod_ynr034w_2_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ynr034w_2_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_ynr034w,trial_on_rich_globalmaxod_ynr034w_results).
result(trial_on_rich_globalmaxod_ynr034w_results).
has_part(trial_on_rich_globalmaxod_ynr034w_results,trial_on_rich_globalmaxod_ynr034w_results_1).
has_representation(trial_on_rich_globalmaxod_ynr034w_results_1,'median of knockout medians missing ynr034w').
text_representation('median of knockout medians missing ynr034w').
has_proposition(trial_on_rich_globalmaxod_ynr034w_results_1,trial_on_rich_globalmaxod_ynr034w_results_1_proc).
procedure(trial_on_rich_globalmaxod_ynr034w_results_1_proc).
has_proposition(trial_on_rich_globalmaxod_ynr034w_results_1_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_rich_globalmaxod_ynr034w_results,trial_on_rich_globalmaxod_ynr034w_results_2).
has_representation(trial_on_rich_globalmaxod_ynr034w_results_2,'median of wild type medians').
text_representation('median of wild type medians').
has_proposition(trial_on_rich_globalmaxod_ynr034w_results_2,trial_on_rich_globalmaxod_ynr034w_results_2_proc).
procedure(trial_on_rich_globalmaxod_ynr034w_results_2_proc).
has_proposition(trial_on_rich_globalmaxod_ynr034w_results_2_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_rich_globalmaxod_ynr034w_results,trial_on_rich_globalmaxod_ynr034w_results_3).
has_representation(trial_on_rich_globalmaxod_ynr034w_results_3,'difference between trial_on_rich_globalmaxod_ynr034w_results_1 and trial_on_rich_globalmaxod_ynr034w_results_2').
text_representation('difference between trial_on_rich_globalmaxod_ynr034w_results_1 and trial_on_rich_globalmaxod_ynr034w_results_2').
has_proposition(study_on_rich_globalmaxod,study_on_rich_globalmaxod_result).
result(study_on_rich_globalmaxod_result).
has_part(study_on_rich_globalmaxod_result,study_on_rich_globalmaxod_result_1).
has_representation(study_on_rich_globalmaxod_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_rich_globalmaxod_result_1,'results/wr_kr_global_max_od.csv').
link('results/wr_kr_global_max_od.csv').
has_proposition(study_on_rich_globalmaxod_result_1,study_on_rich_globalmaxod_result_1_proc).
procedure(study_on_rich_globalmaxod_result_1_proc).
has_proposition(study_on_rich_globalmaxod_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_rich_globalmaxod_result,study_on_rich_globalmaxod_result_2).
has_representation(study_on_rich_globalmaxod_result_2,'bar graph (histogram) plotting study_on_rich_globalmaxod_result_1').
text_representation('bar graph (histogram) plotting study_on_rich_globalmaxod_result_1').
has_proposition(study_on_rich_globalmaxod_result_2,'results/overlayed_global_max_od0.8.tiff').
link('results/overlayed_global_max_od0.8.tiff').
has_proposition(study_on_rich_globalmaxod_result_2,study_on_rich_globalmaxod_result_2_proc).
procedure(study_on_rich_globalmaxod_result_2_proc).
has_proposition(study_on_rich_globalmaxod_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_rich_globalmaxod,study_on_rich_globalmaxod_conclusion).
conclusion(study_on_rich_globalmaxod_conclusion).
has_representation(study_on_rich_globalmaxod_conclusion,'The knockouts reach a lower global_max_od in rich than the wild type').
text_representation('The knockouts reach a lower global_max_od in rich than the wild type').
has_proposition(study_on_rich_globalmaxod_conclusion,'obtain statistical mode of study_on_rich_globalmaxod_result_1').
procedure('obtain statistical mode of study_on_rich_globalmaxod_result_1').
text_representation('obtain statistical mode of study_on_rich_globalmaxod_result_1').
has_part(study_on_rich_globalmaxod,trial_on_rich_globalmaxod_yjl218w).
trial(trial_on_rich_globalmaxod_yjl218w).
has_agent(trial_on_rich_globalmaxod_yjl218w,yjl218w).
strain(yjl218w).
has_proposition(trial_on_rich_globalmaxod_yjl218w_1,trial_on_rich_globalmaxod_yjl218w_1_design).
design(trial_on_rich_globalmaxod_yjl218w_1_design).
has_proposition(trial_on_rich_globalmaxod_yjl218w_1_design,trial_on_rich_globalmaxod_yjl218w_1_factor).
factor(trial_on_rich_globalmaxod_yjl218w_1_factor).
has_representation(trial_on_rich_globalmaxod_yjl218w_1_factor,'presence or absence of yjl218w').
has_input(trial_on_rich_globalmaxod_yjl218w_1,trial_on_rich_globalmaxod_yjl218w_1_data).
data(trial_on_rich_globalmaxod_yjl218w_1_data).
has_part(trial_on_rich_globalmaxod_yjl218w_1_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_yjl218w_1_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_yjl218w_1_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_yjl218w_1,'jan07-trial2_expt001-plate002').
plate('jan07-trial2_expt001-plate002').
has_proposition(trial_on_rich_globalmaxod_yjl218w_1,trial_on_rich_globalmaxod_yjl218w_1_result).
result(trial_on_rich_globalmaxod_yjl218w_1_result).
has_part(trial_on_rich_globalmaxod_yjl218w_1_result,trial_on_rich_globalmaxod_yjl218w_1_result_1).
has_representation(trial_on_rich_globalmaxod_yjl218w_1_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_yjl218w_1_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_yjl218w_1_result_1,trial_on_rich_globalmaxod_yjl218w_1_result_1_proc).
procedure(trial_on_rich_globalmaxod_yjl218w_1_result_1_proc).
has_representation(trial_on_rich_globalmaxod_yjl218w_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_yjl218w_1_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_yjl218w_1_result,trial_on_rich_globalmaxod_yjl218w_1_result_2).
has_representation(trial_on_rich_globalmaxod_yjl218w_1_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_yjl218w_1_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_yjl218w_1_result_2,trial_on_rich_globalmaxod_yjl218w_1_result_2_proc).
procedure(trial_on_rich_globalmaxod_yjl218w_1_result_2_proc).
has_representation(trial_on_rich_globalmaxod_yjl218w_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_yjl218w_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_yjl218w_2,trial_on_rich_globalmaxod_yjl218w_2_design).
design(trial_on_rich_globalmaxod_yjl218w_2_design).
has_proposition(trial_on_rich_globalmaxod_yjl218w_2_design,trial_on_rich_globalmaxod_yjl218w_2_factor).
factor(trial_on_rich_globalmaxod_yjl218w_2_factor).
has_representation(trial_on_rich_globalmaxod_yjl218w_2_factor,'presence or absence of yjl218w').
has_input(trial_on_rich_globalmaxod_yjl218w_2,trial_on_rich_globalmaxod_yjl218w_2_data).
data(trial_on_rich_globalmaxod_yjl218w_2_data).
has_part(trial_on_rich_globalmaxod_yjl218w_2_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_yjl218w_2_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_yjl218w_2_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_yjl218w_2,'mar07-trial1_expt001-plate001').
plate('mar07-trial1_expt001-plate001').
has_proposition(trial_on_rich_globalmaxod_yjl218w_2,trial_on_rich_globalmaxod_yjl218w_2_result).
result(trial_on_rich_globalmaxod_yjl218w_2_result).
has_part(trial_on_rich_globalmaxod_yjl218w_2_result,trial_on_rich_globalmaxod_yjl218w_2_result_1).
has_representation(trial_on_rich_globalmaxod_yjl218w_2_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_yjl218w_2_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_yjl218w_2_result_1,trial_on_rich_globalmaxod_yjl218w_2_result_1_proc).
procedure(trial_on_rich_globalmaxod_yjl218w_2_result_1_proc).
has_representation(trial_on_rich_globalmaxod_yjl218w_2_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_yjl218w_2_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_yjl218w_2_result,trial_on_rich_globalmaxod_yjl218w_2_result_2).
has_representation(trial_on_rich_globalmaxod_yjl218w_2_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_yjl218w_2_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_yjl218w_2_result_2,trial_on_rich_globalmaxod_yjl218w_2_result_2_proc).
procedure(trial_on_rich_globalmaxod_yjl218w_2_result_2_proc).
has_representation(trial_on_rich_globalmaxod_yjl218w_2_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_yjl218w_2_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_yjl218w,trial_on_rich_globalmaxod_yjl218w_results).
result(trial_on_rich_globalmaxod_yjl218w_results).
has_part(trial_on_rich_globalmaxod_yjl218w_results,trial_on_rich_globalmaxod_yjl218w_results_1).
has_representation(trial_on_rich_globalmaxod_yjl218w_results_1,'median of knockout medians missing yjl218w').
text_representation('median of knockout medians missing yjl218w').
has_proposition(trial_on_rich_globalmaxod_yjl218w_results_1,trial_on_rich_globalmaxod_yjl218w_results_1_proc).
procedure(trial_on_rich_globalmaxod_yjl218w_results_1_proc).
has_proposition(trial_on_rich_globalmaxod_yjl218w_results_1_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_rich_globalmaxod_yjl218w_results,trial_on_rich_globalmaxod_yjl218w_results_2).
has_representation(trial_on_rich_globalmaxod_yjl218w_results_2,'median of wild type medians').
text_representation('median of wild type medians').
has_proposition(trial_on_rich_globalmaxod_yjl218w_results_2,trial_on_rich_globalmaxod_yjl218w_results_2_proc).
procedure(trial_on_rich_globalmaxod_yjl218w_results_2_proc).
has_proposition(trial_on_rich_globalmaxod_yjl218w_results_2_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_rich_globalmaxod_yjl218w_results,trial_on_rich_globalmaxod_yjl218w_results_3).
has_representation(trial_on_rich_globalmaxod_yjl218w_results_3,'difference between trial_on_rich_globalmaxod_yjl218w_results_1 and trial_on_rich_globalmaxod_yjl218w_results_2').
text_representation('difference between trial_on_rich_globalmaxod_yjl218w_results_1 and trial_on_rich_globalmaxod_yjl218w_results_2').
has_proposition(study_on_rich_globalmaxod,study_on_rich_globalmaxod_result).
result(study_on_rich_globalmaxod_result).
has_part(study_on_rich_globalmaxod_result,study_on_rich_globalmaxod_result_1).
has_representation(study_on_rich_globalmaxod_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_rich_globalmaxod_result_1,'results/wr_kr_global_max_od.csv').
link('results/wr_kr_global_max_od.csv').
has_proposition(study_on_rich_globalmaxod_result_1,study_on_rich_globalmaxod_result_1_proc).
procedure(study_on_rich_globalmaxod_result_1_proc).
has_proposition(study_on_rich_globalmaxod_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_rich_globalmaxod_result,study_on_rich_globalmaxod_result_2).
has_representation(study_on_rich_globalmaxod_result_2,'bar graph (histogram) plotting study_on_rich_globalmaxod_result_1').
text_representation('bar graph (histogram) plotting study_on_rich_globalmaxod_result_1').
has_proposition(study_on_rich_globalmaxod_result_2,'results/overlayed_global_max_od0.8.tiff').
link('results/overlayed_global_max_od0.8.tiff').
has_proposition(study_on_rich_globalmaxod_result_2,study_on_rich_globalmaxod_result_2_proc).
procedure(study_on_rich_globalmaxod_result_2_proc).
has_proposition(study_on_rich_globalmaxod_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_rich_globalmaxod,study_on_rich_globalmaxod_conclusion).
conclusion(study_on_rich_globalmaxod_conclusion).
has_representation(study_on_rich_globalmaxod_conclusion,'The knockouts reach a lower global_max_od in rich than the wild type').
text_representation('The knockouts reach a lower global_max_od in rich than the wild type').
has_proposition(study_on_rich_globalmaxod_conclusion,'obtain statistical mode of study_on_rich_globalmaxod_result_1').
procedure('obtain statistical mode of study_on_rich_globalmaxod_result_1').
text_representation('obtain statistical mode of study_on_rich_globalmaxod_result_1').
has_part(study_on_rich_globalmaxod,trial_on_rich_globalmaxod_ydr007w).
trial(trial_on_rich_globalmaxod_ydr007w).
has_agent(trial_on_rich_globalmaxod_ydr007w,ydr007w).
strain(ydr007w).
has_proposition(trial_on_rich_globalmaxod_ydr007w_1,trial_on_rich_globalmaxod_ydr007w_1_design).
design(trial_on_rich_globalmaxod_ydr007w_1_design).
has_proposition(trial_on_rich_globalmaxod_ydr007w_1_design,trial_on_rich_globalmaxod_ydr007w_1_factor).
factor(trial_on_rich_globalmaxod_ydr007w_1_factor).
has_representation(trial_on_rich_globalmaxod_ydr007w_1_factor,'presence or absence of ydr007w').
has_input(trial_on_rich_globalmaxod_ydr007w_1,trial_on_rich_globalmaxod_ydr007w_1_data).
data(trial_on_rich_globalmaxod_ydr007w_1_data).
has_part(trial_on_rich_globalmaxod_ydr007w_1_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_ydr007w_1_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_ydr007w_1_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_ydr007w_1,'nature-loop3_expt001-plate007').
plate('nature-loop3_expt001-plate007').
has_proposition(trial_on_rich_globalmaxod_ydr007w_1,trial_on_rich_globalmaxod_ydr007w_1_result).
result(trial_on_rich_globalmaxod_ydr007w_1_result).
has_part(trial_on_rich_globalmaxod_ydr007w_1_result,trial_on_rich_globalmaxod_ydr007w_1_result_1).
has_representation(trial_on_rich_globalmaxod_ydr007w_1_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_ydr007w_1_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ydr007w_1_result_1,trial_on_rich_globalmaxod_ydr007w_1_result_1_proc).
procedure(trial_on_rich_globalmaxod_ydr007w_1_result_1_proc).
has_representation(trial_on_rich_globalmaxod_ydr007w_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ydr007w_1_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_ydr007w_1_result,trial_on_rich_globalmaxod_ydr007w_1_result_2).
has_representation(trial_on_rich_globalmaxod_ydr007w_1_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_ydr007w_1_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ydr007w_1_result_2,trial_on_rich_globalmaxod_ydr007w_1_result_2_proc).
procedure(trial_on_rich_globalmaxod_ydr007w_1_result_2_proc).
has_representation(trial_on_rich_globalmaxod_ydr007w_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ydr007w_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_ydr007w_2,trial_on_rich_globalmaxod_ydr007w_2_design).
design(trial_on_rich_globalmaxod_ydr007w_2_design).
has_proposition(trial_on_rich_globalmaxod_ydr007w_2_design,trial_on_rich_globalmaxod_ydr007w_2_factor).
factor(trial_on_rich_globalmaxod_ydr007w_2_factor).
has_representation(trial_on_rich_globalmaxod_ydr007w_2_factor,'presence or absence of ydr007w').
has_input(trial_on_rich_globalmaxod_ydr007w_2,trial_on_rich_globalmaxod_ydr007w_2_data).
data(trial_on_rich_globalmaxod_ydr007w_2_data).
has_part(trial_on_rich_globalmaxod_ydr007w_2_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_ydr007w_2_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_ydr007w_2_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_ydr007w_2,'nature-loop3_expt002-plate002').
plate('nature-loop3_expt002-plate002').
has_proposition(trial_on_rich_globalmaxod_ydr007w_2,trial_on_rich_globalmaxod_ydr007w_2_result).
result(trial_on_rich_globalmaxod_ydr007w_2_result).
has_part(trial_on_rich_globalmaxod_ydr007w_2_result,trial_on_rich_globalmaxod_ydr007w_2_result_1).
has_representation(trial_on_rich_globalmaxod_ydr007w_2_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_ydr007w_2_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ydr007w_2_result_1,trial_on_rich_globalmaxod_ydr007w_2_result_1_proc).
procedure(trial_on_rich_globalmaxod_ydr007w_2_result_1_proc).
has_representation(trial_on_rich_globalmaxod_ydr007w_2_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ydr007w_2_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_ydr007w_2_result,trial_on_rich_globalmaxod_ydr007w_2_result_2).
has_representation(trial_on_rich_globalmaxod_ydr007w_2_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_ydr007w_2_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ydr007w_2_result_2,trial_on_rich_globalmaxod_ydr007w_2_result_2_proc).
procedure(trial_on_rich_globalmaxod_ydr007w_2_result_2_proc).
has_representation(trial_on_rich_globalmaxod_ydr007w_2_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ydr007w_2_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_ydr007w_3,trial_on_rich_globalmaxod_ydr007w_3_design).
design(trial_on_rich_globalmaxod_ydr007w_3_design).
has_proposition(trial_on_rich_globalmaxod_ydr007w_3_design,trial_on_rich_globalmaxod_ydr007w_3_factor).
factor(trial_on_rich_globalmaxod_ydr007w_3_factor).
has_representation(trial_on_rich_globalmaxod_ydr007w_3_factor,'presence or absence of ydr007w').
has_input(trial_on_rich_globalmaxod_ydr007w_3,trial_on_rich_globalmaxod_ydr007w_3_data).
data(trial_on_rich_globalmaxod_ydr007w_3_data).
has_part(trial_on_rich_globalmaxod_ydr007w_3_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_ydr007w_3_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_ydr007w_3_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_ydr007w_3,'nature-loop3_expt003-plate007').
plate('nature-loop3_expt003-plate007').
has_proposition(trial_on_rich_globalmaxod_ydr007w_3,trial_on_rich_globalmaxod_ydr007w_3_result).
result(trial_on_rich_globalmaxod_ydr007w_3_result).
has_part(trial_on_rich_globalmaxod_ydr007w_3_result,trial_on_rich_globalmaxod_ydr007w_3_result_1).
has_representation(trial_on_rich_globalmaxod_ydr007w_3_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_ydr007w_3_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ydr007w_3_result_1,trial_on_rich_globalmaxod_ydr007w_3_result_1_proc).
procedure(trial_on_rich_globalmaxod_ydr007w_3_result_1_proc).
has_representation(trial_on_rich_globalmaxod_ydr007w_3_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ydr007w_3_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_ydr007w_3_result,trial_on_rich_globalmaxod_ydr007w_3_result_2).
has_representation(trial_on_rich_globalmaxod_ydr007w_3_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_ydr007w_3_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ydr007w_3_result_2,trial_on_rich_globalmaxod_ydr007w_3_result_2_proc).
procedure(trial_on_rich_globalmaxod_ydr007w_3_result_2_proc).
has_representation(trial_on_rich_globalmaxod_ydr007w_3_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ydr007w_3_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_ydr007w_4,trial_on_rich_globalmaxod_ydr007w_4_design).
design(trial_on_rich_globalmaxod_ydr007w_4_design).
has_proposition(trial_on_rich_globalmaxod_ydr007w_4_design,trial_on_rich_globalmaxod_ydr007w_4_factor).
factor(trial_on_rich_globalmaxod_ydr007w_4_factor).
has_representation(trial_on_rich_globalmaxod_ydr007w_4_factor,'presence or absence of ydr007w').
has_input(trial_on_rich_globalmaxod_ydr007w_4,trial_on_rich_globalmaxod_ydr007w_4_data).
data(trial_on_rich_globalmaxod_ydr007w_4_data).
has_part(trial_on_rich_globalmaxod_ydr007w_4_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_ydr007w_4_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_ydr007w_4_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_ydr007w_4,'nature-loop3_expt004-plate002').
plate('nature-loop3_expt004-plate002').
has_proposition(trial_on_rich_globalmaxod_ydr007w_4,trial_on_rich_globalmaxod_ydr007w_4_result).
result(trial_on_rich_globalmaxod_ydr007w_4_result).
has_part(trial_on_rich_globalmaxod_ydr007w_4_result,trial_on_rich_globalmaxod_ydr007w_4_result_1).
has_representation(trial_on_rich_globalmaxod_ydr007w_4_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_ydr007w_4_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ydr007w_4_result_1,trial_on_rich_globalmaxod_ydr007w_4_result_1_proc).
procedure(trial_on_rich_globalmaxod_ydr007w_4_result_1_proc).
has_representation(trial_on_rich_globalmaxod_ydr007w_4_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ydr007w_4_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_ydr007w_4_result,trial_on_rich_globalmaxod_ydr007w_4_result_2).
has_representation(trial_on_rich_globalmaxod_ydr007w_4_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_ydr007w_4_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ydr007w_4_result_2,trial_on_rich_globalmaxod_ydr007w_4_result_2_proc).
procedure(trial_on_rich_globalmaxod_ydr007w_4_result_2_proc).
has_representation(trial_on_rich_globalmaxod_ydr007w_4_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ydr007w_4_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_ydr007w_5,trial_on_rich_globalmaxod_ydr007w_5_design).
design(trial_on_rich_globalmaxod_ydr007w_5_design).
has_proposition(trial_on_rich_globalmaxod_ydr007w_5_design,trial_on_rich_globalmaxod_ydr007w_5_factor).
factor(trial_on_rich_globalmaxod_ydr007w_5_factor).
has_representation(trial_on_rich_globalmaxod_ydr007w_5_factor,'presence or absence of ydr007w').
has_input(trial_on_rich_globalmaxod_ydr007w_5,trial_on_rich_globalmaxod_ydr007w_5_data).
data(trial_on_rich_globalmaxod_ydr007w_5_data).
has_part(trial_on_rich_globalmaxod_ydr007w_5_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_ydr007w_5_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_ydr007w_5_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_ydr007w_5,'nature-loop3_expt005-plate002').
plate('nature-loop3_expt005-plate002').
has_proposition(trial_on_rich_globalmaxod_ydr007w_5,trial_on_rich_globalmaxod_ydr007w_5_result).
result(trial_on_rich_globalmaxod_ydr007w_5_result).
has_part(trial_on_rich_globalmaxod_ydr007w_5_result,trial_on_rich_globalmaxod_ydr007w_5_result_1).
has_representation(trial_on_rich_globalmaxod_ydr007w_5_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_ydr007w_5_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ydr007w_5_result_1,trial_on_rich_globalmaxod_ydr007w_5_result_1_proc).
procedure(trial_on_rich_globalmaxod_ydr007w_5_result_1_proc).
has_representation(trial_on_rich_globalmaxod_ydr007w_5_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ydr007w_5_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_ydr007w_5_result,trial_on_rich_globalmaxod_ydr007w_5_result_2).
has_representation(trial_on_rich_globalmaxod_ydr007w_5_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_ydr007w_5_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ydr007w_5_result_2,trial_on_rich_globalmaxod_ydr007w_5_result_2_proc).
procedure(trial_on_rich_globalmaxod_ydr007w_5_result_2_proc).
has_representation(trial_on_rich_globalmaxod_ydr007w_5_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ydr007w_5_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_ydr007w_6,trial_on_rich_globalmaxod_ydr007w_6_design).
design(trial_on_rich_globalmaxod_ydr007w_6_design).
has_proposition(trial_on_rich_globalmaxod_ydr007w_6_design,trial_on_rich_globalmaxod_ydr007w_6_factor).
factor(trial_on_rich_globalmaxod_ydr007w_6_factor).
has_representation(trial_on_rich_globalmaxod_ydr007w_6_factor,'presence or absence of ydr007w').
has_input(trial_on_rich_globalmaxod_ydr007w_6,trial_on_rich_globalmaxod_ydr007w_6_data).
data(trial_on_rich_globalmaxod_ydr007w_6_data).
has_part(trial_on_rich_globalmaxod_ydr007w_6_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_ydr007w_6_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_ydr007w_6_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_ydr007w_6,'nature-loop1_expt001-plate007').
plate('nature-loop1_expt001-plate007').
has_proposition(trial_on_rich_globalmaxod_ydr007w_6,trial_on_rich_globalmaxod_ydr007w_6_result).
result(trial_on_rich_globalmaxod_ydr007w_6_result).
has_part(trial_on_rich_globalmaxod_ydr007w_6_result,trial_on_rich_globalmaxod_ydr007w_6_result_1).
has_representation(trial_on_rich_globalmaxod_ydr007w_6_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_ydr007w_6_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ydr007w_6_result_1,trial_on_rich_globalmaxod_ydr007w_6_result_1_proc).
procedure(trial_on_rich_globalmaxod_ydr007w_6_result_1_proc).
has_representation(trial_on_rich_globalmaxod_ydr007w_6_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ydr007w_6_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_ydr007w_6_result,trial_on_rich_globalmaxod_ydr007w_6_result_2).
has_representation(trial_on_rich_globalmaxod_ydr007w_6_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_ydr007w_6_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ydr007w_6_result_2,trial_on_rich_globalmaxod_ydr007w_6_result_2_proc).
procedure(trial_on_rich_globalmaxod_ydr007w_6_result_2_proc).
has_representation(trial_on_rich_globalmaxod_ydr007w_6_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ydr007w_6_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_ydr007w_7,trial_on_rich_globalmaxod_ydr007w_7_design).
design(trial_on_rich_globalmaxod_ydr007w_7_design).
has_proposition(trial_on_rich_globalmaxod_ydr007w_7_design,trial_on_rich_globalmaxod_ydr007w_7_factor).
factor(trial_on_rich_globalmaxod_ydr007w_7_factor).
has_representation(trial_on_rich_globalmaxod_ydr007w_7_factor,'presence or absence of ydr007w').
has_input(trial_on_rich_globalmaxod_ydr007w_7,trial_on_rich_globalmaxod_ydr007w_7_data).
data(trial_on_rich_globalmaxod_ydr007w_7_data).
has_part(trial_on_rich_globalmaxod_ydr007w_7_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_ydr007w_7_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_ydr007w_7_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_ydr007w_7,'nature-loop2_expt001-plate003').
plate('nature-loop2_expt001-plate003').
has_proposition(trial_on_rich_globalmaxod_ydr007w_7,trial_on_rich_globalmaxod_ydr007w_7_result).
result(trial_on_rich_globalmaxod_ydr007w_7_result).
has_part(trial_on_rich_globalmaxod_ydr007w_7_result,trial_on_rich_globalmaxod_ydr007w_7_result_1).
has_representation(trial_on_rich_globalmaxod_ydr007w_7_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_ydr007w_7_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ydr007w_7_result_1,trial_on_rich_globalmaxod_ydr007w_7_result_1_proc).
procedure(trial_on_rich_globalmaxod_ydr007w_7_result_1_proc).
has_representation(trial_on_rich_globalmaxod_ydr007w_7_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ydr007w_7_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_ydr007w_7_result,trial_on_rich_globalmaxod_ydr007w_7_result_2).
has_representation(trial_on_rich_globalmaxod_ydr007w_7_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_ydr007w_7_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ydr007w_7_result_2,trial_on_rich_globalmaxod_ydr007w_7_result_2_proc).
procedure(trial_on_rich_globalmaxod_ydr007w_7_result_2_proc).
has_representation(trial_on_rich_globalmaxod_ydr007w_7_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ydr007w_7_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_ydr007w_8,trial_on_rich_globalmaxod_ydr007w_8_design).
design(trial_on_rich_globalmaxod_ydr007w_8_design).
has_proposition(trial_on_rich_globalmaxod_ydr007w_8_design,trial_on_rich_globalmaxod_ydr007w_8_factor).
factor(trial_on_rich_globalmaxod_ydr007w_8_factor).
has_representation(trial_on_rich_globalmaxod_ydr007w_8_factor,'presence or absence of ydr007w').
has_input(trial_on_rich_globalmaxod_ydr007w_8,trial_on_rich_globalmaxod_ydr007w_8_data).
data(trial_on_rich_globalmaxod_ydr007w_8_data).
has_part(trial_on_rich_globalmaxod_ydr007w_8_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_ydr007w_8_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_ydr007w_8_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_ydr007w_8,'nature-loop3_expt006-plate001').
plate('nature-loop3_expt006-plate001').
has_proposition(trial_on_rich_globalmaxod_ydr007w_8,trial_on_rich_globalmaxod_ydr007w_8_result).
result(trial_on_rich_globalmaxod_ydr007w_8_result).
has_part(trial_on_rich_globalmaxod_ydr007w_8_result,trial_on_rich_globalmaxod_ydr007w_8_result_1).
has_representation(trial_on_rich_globalmaxod_ydr007w_8_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_ydr007w_8_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ydr007w_8_result_1,trial_on_rich_globalmaxod_ydr007w_8_result_1_proc).
procedure(trial_on_rich_globalmaxod_ydr007w_8_result_1_proc).
has_representation(trial_on_rich_globalmaxod_ydr007w_8_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ydr007w_8_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_ydr007w_8_result,trial_on_rich_globalmaxod_ydr007w_8_result_2).
has_representation(trial_on_rich_globalmaxod_ydr007w_8_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_ydr007w_8_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ydr007w_8_result_2,trial_on_rich_globalmaxod_ydr007w_8_result_2_proc).
procedure(trial_on_rich_globalmaxod_ydr007w_8_result_2_proc).
has_representation(trial_on_rich_globalmaxod_ydr007w_8_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ydr007w_8_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_ydr007w,trial_on_rich_globalmaxod_ydr007w_results).
result(trial_on_rich_globalmaxod_ydr007w_results).
has_part(trial_on_rich_globalmaxod_ydr007w_results,trial_on_rich_globalmaxod_ydr007w_results_1).
has_representation(trial_on_rich_globalmaxod_ydr007w_results_1,'median of knockout medians missing ydr007w').
text_representation('median of knockout medians missing ydr007w').
has_proposition(trial_on_rich_globalmaxod_ydr007w_results_1,trial_on_rich_globalmaxod_ydr007w_results_1_proc).
procedure(trial_on_rich_globalmaxod_ydr007w_results_1_proc).
has_proposition(trial_on_rich_globalmaxod_ydr007w_results_1_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_rich_globalmaxod_ydr007w_results,trial_on_rich_globalmaxod_ydr007w_results_2).
has_representation(trial_on_rich_globalmaxod_ydr007w_results_2,'median of wild type medians').
text_representation('median of wild type medians').
has_proposition(trial_on_rich_globalmaxod_ydr007w_results_2,trial_on_rich_globalmaxod_ydr007w_results_2_proc).
procedure(trial_on_rich_globalmaxod_ydr007w_results_2_proc).
has_proposition(trial_on_rich_globalmaxod_ydr007w_results_2_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_rich_globalmaxod_ydr007w_results,trial_on_rich_globalmaxod_ydr007w_results_3).
has_representation(trial_on_rich_globalmaxod_ydr007w_results_3,'difference between trial_on_rich_globalmaxod_ydr007w_results_1 and trial_on_rich_globalmaxod_ydr007w_results_2').
text_representation('difference between trial_on_rich_globalmaxod_ydr007w_results_1 and trial_on_rich_globalmaxod_ydr007w_results_2').
has_proposition(study_on_rich_globalmaxod,study_on_rich_globalmaxod_result).
result(study_on_rich_globalmaxod_result).
has_part(study_on_rich_globalmaxod_result,study_on_rich_globalmaxod_result_1).
has_representation(study_on_rich_globalmaxod_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_rich_globalmaxod_result_1,'results/wr_kr_global_max_od.csv').
link('results/wr_kr_global_max_od.csv').
has_proposition(study_on_rich_globalmaxod_result_1,study_on_rich_globalmaxod_result_1_proc).
procedure(study_on_rich_globalmaxod_result_1_proc).
has_proposition(study_on_rich_globalmaxod_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_rich_globalmaxod_result,study_on_rich_globalmaxod_result_2).
has_representation(study_on_rich_globalmaxod_result_2,'bar graph (histogram) plotting study_on_rich_globalmaxod_result_1').
text_representation('bar graph (histogram) plotting study_on_rich_globalmaxod_result_1').
has_proposition(study_on_rich_globalmaxod_result_2,'results/overlayed_global_max_od0.8.tiff').
link('results/overlayed_global_max_od0.8.tiff').
has_proposition(study_on_rich_globalmaxod_result_2,study_on_rich_globalmaxod_result_2_proc).
procedure(study_on_rich_globalmaxod_result_2_proc).
has_proposition(study_on_rich_globalmaxod_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_rich_globalmaxod,study_on_rich_globalmaxod_conclusion).
conclusion(study_on_rich_globalmaxod_conclusion).
has_representation(study_on_rich_globalmaxod_conclusion,'The knockouts reach a lower global_max_od in rich than the wild type').
text_representation('The knockouts reach a lower global_max_od in rich than the wild type').
has_proposition(study_on_rich_globalmaxod_conclusion,'obtain statistical mode of study_on_rich_globalmaxod_result_1').
procedure('obtain statistical mode of study_on_rich_globalmaxod_result_1').
text_representation('obtain statistical mode of study_on_rich_globalmaxod_result_1').
has_part(study_on_rich_globalmaxod,trial_on_rich_globalmaxod_ygl026c).
trial(trial_on_rich_globalmaxod_ygl026c).
has_agent(trial_on_rich_globalmaxod_ygl026c,ygl026c).
strain(ygl026c).
has_proposition(trial_on_rich_globalmaxod_ygl026c_1,trial_on_rich_globalmaxod_ygl026c_1_design).
design(trial_on_rich_globalmaxod_ygl026c_1_design).
has_proposition(trial_on_rich_globalmaxod_ygl026c_1_design,trial_on_rich_globalmaxod_ygl026c_1_factor).
factor(trial_on_rich_globalmaxod_ygl026c_1_factor).
has_representation(trial_on_rich_globalmaxod_ygl026c_1_factor,'presence or absence of ygl026c').
has_input(trial_on_rich_globalmaxod_ygl026c_1,trial_on_rich_globalmaxod_ygl026c_1_data).
data(trial_on_rich_globalmaxod_ygl026c_1_data).
has_part(trial_on_rich_globalmaxod_ygl026c_1_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_ygl026c_1_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_ygl026c_1_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_ygl026c_1,'nature-loop3_expt001-plate003').
plate('nature-loop3_expt001-plate003').
has_proposition(trial_on_rich_globalmaxod_ygl026c_1,trial_on_rich_globalmaxod_ygl026c_1_result).
result(trial_on_rich_globalmaxod_ygl026c_1_result).
has_part(trial_on_rich_globalmaxod_ygl026c_1_result,trial_on_rich_globalmaxod_ygl026c_1_result_1).
has_representation(trial_on_rich_globalmaxod_ygl026c_1_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_ygl026c_1_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ygl026c_1_result_1,trial_on_rich_globalmaxod_ygl026c_1_result_1_proc).
procedure(trial_on_rich_globalmaxod_ygl026c_1_result_1_proc).
has_representation(trial_on_rich_globalmaxod_ygl026c_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ygl026c_1_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_ygl026c_1_result,trial_on_rich_globalmaxod_ygl026c_1_result_2).
has_representation(trial_on_rich_globalmaxod_ygl026c_1_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_ygl026c_1_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ygl026c_1_result_2,trial_on_rich_globalmaxod_ygl026c_1_result_2_proc).
procedure(trial_on_rich_globalmaxod_ygl026c_1_result_2_proc).
has_representation(trial_on_rich_globalmaxod_ygl026c_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ygl026c_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_ygl026c_2,trial_on_rich_globalmaxod_ygl026c_2_design).
design(trial_on_rich_globalmaxod_ygl026c_2_design).
has_proposition(trial_on_rich_globalmaxod_ygl026c_2_design,trial_on_rich_globalmaxod_ygl026c_2_factor).
factor(trial_on_rich_globalmaxod_ygl026c_2_factor).
has_representation(trial_on_rich_globalmaxod_ygl026c_2_factor,'presence or absence of ygl026c').
has_input(trial_on_rich_globalmaxod_ygl026c_2,trial_on_rich_globalmaxod_ygl026c_2_data).
data(trial_on_rich_globalmaxod_ygl026c_2_data).
has_part(trial_on_rich_globalmaxod_ygl026c_2_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_ygl026c_2_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_ygl026c_2_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_ygl026c_2,'nature-loop3_expt002-plate006').
plate('nature-loop3_expt002-plate006').
has_proposition(trial_on_rich_globalmaxod_ygl026c_2,trial_on_rich_globalmaxod_ygl026c_2_result).
result(trial_on_rich_globalmaxod_ygl026c_2_result).
has_part(trial_on_rich_globalmaxod_ygl026c_2_result,trial_on_rich_globalmaxod_ygl026c_2_result_1).
has_representation(trial_on_rich_globalmaxod_ygl026c_2_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_ygl026c_2_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ygl026c_2_result_1,trial_on_rich_globalmaxod_ygl026c_2_result_1_proc).
procedure(trial_on_rich_globalmaxod_ygl026c_2_result_1_proc).
has_representation(trial_on_rich_globalmaxod_ygl026c_2_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ygl026c_2_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_ygl026c_2_result,trial_on_rich_globalmaxod_ygl026c_2_result_2).
has_representation(trial_on_rich_globalmaxod_ygl026c_2_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_ygl026c_2_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ygl026c_2_result_2,trial_on_rich_globalmaxod_ygl026c_2_result_2_proc).
procedure(trial_on_rich_globalmaxod_ygl026c_2_result_2_proc).
has_representation(trial_on_rich_globalmaxod_ygl026c_2_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ygl026c_2_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_ygl026c_3,trial_on_rich_globalmaxod_ygl026c_3_design).
design(trial_on_rich_globalmaxod_ygl026c_3_design).
has_proposition(trial_on_rich_globalmaxod_ygl026c_3_design,trial_on_rich_globalmaxod_ygl026c_3_factor).
factor(trial_on_rich_globalmaxod_ygl026c_3_factor).
has_representation(trial_on_rich_globalmaxod_ygl026c_3_factor,'presence or absence of ygl026c').
has_input(trial_on_rich_globalmaxod_ygl026c_3,trial_on_rich_globalmaxod_ygl026c_3_data).
data(trial_on_rich_globalmaxod_ygl026c_3_data).
has_part(trial_on_rich_globalmaxod_ygl026c_3_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_ygl026c_3_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_ygl026c_3_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_ygl026c_3,'nature-loop3_expt003-plate003').
plate('nature-loop3_expt003-plate003').
has_proposition(trial_on_rich_globalmaxod_ygl026c_3,trial_on_rich_globalmaxod_ygl026c_3_result).
result(trial_on_rich_globalmaxod_ygl026c_3_result).
has_part(trial_on_rich_globalmaxod_ygl026c_3_result,trial_on_rich_globalmaxod_ygl026c_3_result_1).
has_representation(trial_on_rich_globalmaxod_ygl026c_3_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_ygl026c_3_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ygl026c_3_result_1,trial_on_rich_globalmaxod_ygl026c_3_result_1_proc).
procedure(trial_on_rich_globalmaxod_ygl026c_3_result_1_proc).
has_representation(trial_on_rich_globalmaxod_ygl026c_3_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ygl026c_3_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_ygl026c_3_result,trial_on_rich_globalmaxod_ygl026c_3_result_2).
has_representation(trial_on_rich_globalmaxod_ygl026c_3_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_ygl026c_3_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ygl026c_3_result_2,trial_on_rich_globalmaxod_ygl026c_3_result_2_proc).
procedure(trial_on_rich_globalmaxod_ygl026c_3_result_2_proc).
has_representation(trial_on_rich_globalmaxod_ygl026c_3_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ygl026c_3_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_ygl026c_4,trial_on_rich_globalmaxod_ygl026c_4_design).
design(trial_on_rich_globalmaxod_ygl026c_4_design).
has_proposition(trial_on_rich_globalmaxod_ygl026c_4_design,trial_on_rich_globalmaxod_ygl026c_4_factor).
factor(trial_on_rich_globalmaxod_ygl026c_4_factor).
has_representation(trial_on_rich_globalmaxod_ygl026c_4_factor,'presence or absence of ygl026c').
has_input(trial_on_rich_globalmaxod_ygl026c_4,trial_on_rich_globalmaxod_ygl026c_4_data).
data(trial_on_rich_globalmaxod_ygl026c_4_data).
has_part(trial_on_rich_globalmaxod_ygl026c_4_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_ygl026c_4_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_ygl026c_4_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_ygl026c_4,'nature-loop3_expt004-plate006').
plate('nature-loop3_expt004-plate006').
has_proposition(trial_on_rich_globalmaxod_ygl026c_4,trial_on_rich_globalmaxod_ygl026c_4_result).
result(trial_on_rich_globalmaxod_ygl026c_4_result).
has_part(trial_on_rich_globalmaxod_ygl026c_4_result,trial_on_rich_globalmaxod_ygl026c_4_result_1).
has_representation(trial_on_rich_globalmaxod_ygl026c_4_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_ygl026c_4_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ygl026c_4_result_1,trial_on_rich_globalmaxod_ygl026c_4_result_1_proc).
procedure(trial_on_rich_globalmaxod_ygl026c_4_result_1_proc).
has_representation(trial_on_rich_globalmaxod_ygl026c_4_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ygl026c_4_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_ygl026c_4_result,trial_on_rich_globalmaxod_ygl026c_4_result_2).
has_representation(trial_on_rich_globalmaxod_ygl026c_4_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_ygl026c_4_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ygl026c_4_result_2,trial_on_rich_globalmaxod_ygl026c_4_result_2_proc).
procedure(trial_on_rich_globalmaxod_ygl026c_4_result_2_proc).
has_representation(trial_on_rich_globalmaxod_ygl026c_4_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ygl026c_4_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_ygl026c_5,trial_on_rich_globalmaxod_ygl026c_5_design).
design(trial_on_rich_globalmaxod_ygl026c_5_design).
has_proposition(trial_on_rich_globalmaxod_ygl026c_5_design,trial_on_rich_globalmaxod_ygl026c_5_factor).
factor(trial_on_rich_globalmaxod_ygl026c_5_factor).
has_representation(trial_on_rich_globalmaxod_ygl026c_5_factor,'presence or absence of ygl026c').
has_input(trial_on_rich_globalmaxod_ygl026c_5,trial_on_rich_globalmaxod_ygl026c_5_data).
data(trial_on_rich_globalmaxod_ygl026c_5_data).
has_part(trial_on_rich_globalmaxod_ygl026c_5_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_ygl026c_5_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_ygl026c_5_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_ygl026c_5,'nature-loop3_expt005-plate006').
plate('nature-loop3_expt005-plate006').
has_proposition(trial_on_rich_globalmaxod_ygl026c_5,trial_on_rich_globalmaxod_ygl026c_5_result).
result(trial_on_rich_globalmaxod_ygl026c_5_result).
has_part(trial_on_rich_globalmaxod_ygl026c_5_result,trial_on_rich_globalmaxod_ygl026c_5_result_1).
has_representation(trial_on_rich_globalmaxod_ygl026c_5_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_ygl026c_5_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ygl026c_5_result_1,trial_on_rich_globalmaxod_ygl026c_5_result_1_proc).
procedure(trial_on_rich_globalmaxod_ygl026c_5_result_1_proc).
has_representation(trial_on_rich_globalmaxod_ygl026c_5_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ygl026c_5_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_ygl026c_5_result,trial_on_rich_globalmaxod_ygl026c_5_result_2).
has_representation(trial_on_rich_globalmaxod_ygl026c_5_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_ygl026c_5_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ygl026c_5_result_2,trial_on_rich_globalmaxod_ygl026c_5_result_2_proc).
procedure(trial_on_rich_globalmaxod_ygl026c_5_result_2_proc).
has_representation(trial_on_rich_globalmaxod_ygl026c_5_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ygl026c_5_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_ygl026c_6,trial_on_rich_globalmaxod_ygl026c_6_design).
design(trial_on_rich_globalmaxod_ygl026c_6_design).
has_proposition(trial_on_rich_globalmaxod_ygl026c_6_design,trial_on_rich_globalmaxod_ygl026c_6_factor).
factor(trial_on_rich_globalmaxod_ygl026c_6_factor).
has_representation(trial_on_rich_globalmaxod_ygl026c_6_factor,'presence or absence of ygl026c').
has_input(trial_on_rich_globalmaxod_ygl026c_6,trial_on_rich_globalmaxod_ygl026c_6_data).
data(trial_on_rich_globalmaxod_ygl026c_6_data).
has_part(trial_on_rich_globalmaxod_ygl026c_6_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_ygl026c_6_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_ygl026c_6_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_ygl026c_6,'nature-loop1_expt001-plate003').
plate('nature-loop1_expt001-plate003').
has_proposition(trial_on_rich_globalmaxod_ygl026c_6,trial_on_rich_globalmaxod_ygl026c_6_result).
result(trial_on_rich_globalmaxod_ygl026c_6_result).
has_part(trial_on_rich_globalmaxod_ygl026c_6_result,trial_on_rich_globalmaxod_ygl026c_6_result_1).
has_representation(trial_on_rich_globalmaxod_ygl026c_6_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_ygl026c_6_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ygl026c_6_result_1,trial_on_rich_globalmaxod_ygl026c_6_result_1_proc).
procedure(trial_on_rich_globalmaxod_ygl026c_6_result_1_proc).
has_representation(trial_on_rich_globalmaxod_ygl026c_6_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ygl026c_6_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_ygl026c_6_result,trial_on_rich_globalmaxod_ygl026c_6_result_2).
has_representation(trial_on_rich_globalmaxod_ygl026c_6_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_ygl026c_6_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ygl026c_6_result_2,trial_on_rich_globalmaxod_ygl026c_6_result_2_proc).
procedure(trial_on_rich_globalmaxod_ygl026c_6_result_2_proc).
has_representation(trial_on_rich_globalmaxod_ygl026c_6_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ygl026c_6_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_ygl026c_7,trial_on_rich_globalmaxod_ygl026c_7_design).
design(trial_on_rich_globalmaxod_ygl026c_7_design).
has_proposition(trial_on_rich_globalmaxod_ygl026c_7_design,trial_on_rich_globalmaxod_ygl026c_7_factor).
factor(trial_on_rich_globalmaxod_ygl026c_7_factor).
has_representation(trial_on_rich_globalmaxod_ygl026c_7_factor,'presence or absence of ygl026c').
has_input(trial_on_rich_globalmaxod_ygl026c_7,trial_on_rich_globalmaxod_ygl026c_7_data).
data(trial_on_rich_globalmaxod_ygl026c_7_data).
has_part(trial_on_rich_globalmaxod_ygl026c_7_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_ygl026c_7_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_ygl026c_7_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_ygl026c_7,'nature-loop2_expt001-plate005').
plate('nature-loop2_expt001-plate005').
has_proposition(trial_on_rich_globalmaxod_ygl026c_7,trial_on_rich_globalmaxod_ygl026c_7_result).
result(trial_on_rich_globalmaxod_ygl026c_7_result).
has_part(trial_on_rich_globalmaxod_ygl026c_7_result,trial_on_rich_globalmaxod_ygl026c_7_result_1).
has_representation(trial_on_rich_globalmaxod_ygl026c_7_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_ygl026c_7_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ygl026c_7_result_1,trial_on_rich_globalmaxod_ygl026c_7_result_1_proc).
procedure(trial_on_rich_globalmaxod_ygl026c_7_result_1_proc).
has_representation(trial_on_rich_globalmaxod_ygl026c_7_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ygl026c_7_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_ygl026c_7_result,trial_on_rich_globalmaxod_ygl026c_7_result_2).
has_representation(trial_on_rich_globalmaxod_ygl026c_7_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_ygl026c_7_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ygl026c_7_result_2,trial_on_rich_globalmaxod_ygl026c_7_result_2_proc).
procedure(trial_on_rich_globalmaxod_ygl026c_7_result_2_proc).
has_representation(trial_on_rich_globalmaxod_ygl026c_7_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ygl026c_7_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_ygl026c_8,trial_on_rich_globalmaxod_ygl026c_8_design).
design(trial_on_rich_globalmaxod_ygl026c_8_design).
has_proposition(trial_on_rich_globalmaxod_ygl026c_8_design,trial_on_rich_globalmaxod_ygl026c_8_factor).
factor(trial_on_rich_globalmaxod_ygl026c_8_factor).
has_representation(trial_on_rich_globalmaxod_ygl026c_8_factor,'presence or absence of ygl026c').
has_input(trial_on_rich_globalmaxod_ygl026c_8,trial_on_rich_globalmaxod_ygl026c_8_data).
data(trial_on_rich_globalmaxod_ygl026c_8_data).
has_part(trial_on_rich_globalmaxod_ygl026c_8_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_ygl026c_8_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_ygl026c_8_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_ygl026c_8,'nature-loop3_expt006-plate005').
plate('nature-loop3_expt006-plate005').
has_proposition(trial_on_rich_globalmaxod_ygl026c_8,trial_on_rich_globalmaxod_ygl026c_8_result).
result(trial_on_rich_globalmaxod_ygl026c_8_result).
has_part(trial_on_rich_globalmaxod_ygl026c_8_result,trial_on_rich_globalmaxod_ygl026c_8_result_1).
has_representation(trial_on_rich_globalmaxod_ygl026c_8_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_ygl026c_8_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ygl026c_8_result_1,trial_on_rich_globalmaxod_ygl026c_8_result_1_proc).
procedure(trial_on_rich_globalmaxod_ygl026c_8_result_1_proc).
has_representation(trial_on_rich_globalmaxod_ygl026c_8_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ygl026c_8_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_ygl026c_8_result,trial_on_rich_globalmaxod_ygl026c_8_result_2).
has_representation(trial_on_rich_globalmaxod_ygl026c_8_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_ygl026c_8_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ygl026c_8_result_2,trial_on_rich_globalmaxod_ygl026c_8_result_2_proc).
procedure(trial_on_rich_globalmaxod_ygl026c_8_result_2_proc).
has_representation(trial_on_rich_globalmaxod_ygl026c_8_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ygl026c_8_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_ygl026c,trial_on_rich_globalmaxod_ygl026c_results).
result(trial_on_rich_globalmaxod_ygl026c_results).
has_part(trial_on_rich_globalmaxod_ygl026c_results,trial_on_rich_globalmaxod_ygl026c_results_1).
has_representation(trial_on_rich_globalmaxod_ygl026c_results_1,'median of knockout medians missing ygl026c').
text_representation('median of knockout medians missing ygl026c').
has_proposition(trial_on_rich_globalmaxod_ygl026c_results_1,trial_on_rich_globalmaxod_ygl026c_results_1_proc).
procedure(trial_on_rich_globalmaxod_ygl026c_results_1_proc).
has_proposition(trial_on_rich_globalmaxod_ygl026c_results_1_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_rich_globalmaxod_ygl026c_results,trial_on_rich_globalmaxod_ygl026c_results_2).
has_representation(trial_on_rich_globalmaxod_ygl026c_results_2,'median of wild type medians').
text_representation('median of wild type medians').
has_proposition(trial_on_rich_globalmaxod_ygl026c_results_2,trial_on_rich_globalmaxod_ygl026c_results_2_proc).
procedure(trial_on_rich_globalmaxod_ygl026c_results_2_proc).
has_proposition(trial_on_rich_globalmaxod_ygl026c_results_2_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_rich_globalmaxod_ygl026c_results,trial_on_rich_globalmaxod_ygl026c_results_3).
has_representation(trial_on_rich_globalmaxod_ygl026c_results_3,'difference between trial_on_rich_globalmaxod_ygl026c_results_1 and trial_on_rich_globalmaxod_ygl026c_results_2').
text_representation('difference between trial_on_rich_globalmaxod_ygl026c_results_1 and trial_on_rich_globalmaxod_ygl026c_results_2').
has_proposition(study_on_rich_globalmaxod,study_on_rich_globalmaxod_result).
result(study_on_rich_globalmaxod_result).
has_part(study_on_rich_globalmaxod_result,study_on_rich_globalmaxod_result_1).
has_representation(study_on_rich_globalmaxod_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_rich_globalmaxod_result_1,'results/wr_kr_global_max_od.csv').
link('results/wr_kr_global_max_od.csv').
has_proposition(study_on_rich_globalmaxod_result_1,study_on_rich_globalmaxod_result_1_proc).
procedure(study_on_rich_globalmaxod_result_1_proc).
has_proposition(study_on_rich_globalmaxod_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_rich_globalmaxod_result,study_on_rich_globalmaxod_result_2).
has_representation(study_on_rich_globalmaxod_result_2,'bar graph (histogram) plotting study_on_rich_globalmaxod_result_1').
text_representation('bar graph (histogram) plotting study_on_rich_globalmaxod_result_1').
has_proposition(study_on_rich_globalmaxod_result_2,'results/overlayed_global_max_od0.8.tiff').
link('results/overlayed_global_max_od0.8.tiff').
has_proposition(study_on_rich_globalmaxod_result_2,study_on_rich_globalmaxod_result_2_proc).
procedure(study_on_rich_globalmaxod_result_2_proc).
has_proposition(study_on_rich_globalmaxod_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_rich_globalmaxod,study_on_rich_globalmaxod_conclusion).
conclusion(study_on_rich_globalmaxod_conclusion).
has_representation(study_on_rich_globalmaxod_conclusion,'The knockouts reach a lower global_max_od in rich than the wild type').
text_representation('The knockouts reach a lower global_max_od in rich than the wild type').
has_proposition(study_on_rich_globalmaxod_conclusion,'obtain statistical mode of study_on_rich_globalmaxod_result_1').
procedure('obtain statistical mode of study_on_rich_globalmaxod_result_1').
text_representation('obtain statistical mode of study_on_rich_globalmaxod_result_1').
has_part(study_on_rich_globalmaxod,trial_on_rich_globalmaxod_ydr354w).
trial(trial_on_rich_globalmaxod_ydr354w).
has_agent(trial_on_rich_globalmaxod_ydr354w,ydr354w).
strain(ydr354w).
has_proposition(trial_on_rich_globalmaxod_ydr354w_1,trial_on_rich_globalmaxod_ydr354w_1_design).
design(trial_on_rich_globalmaxod_ydr354w_1_design).
has_proposition(trial_on_rich_globalmaxod_ydr354w_1_design,trial_on_rich_globalmaxod_ydr354w_1_factor).
factor(trial_on_rich_globalmaxod_ydr354w_1_factor).
has_representation(trial_on_rich_globalmaxod_ydr354w_1_factor,'presence or absence of ydr354w').
has_input(trial_on_rich_globalmaxod_ydr354w_1,trial_on_rich_globalmaxod_ydr354w_1_data).
data(trial_on_rich_globalmaxod_ydr354w_1_data).
has_part(trial_on_rich_globalmaxod_ydr354w_1_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_ydr354w_1_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_ydr354w_1_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_ydr354w_1,'nature-loop3_expt001-plate005').
plate('nature-loop3_expt001-plate005').
has_proposition(trial_on_rich_globalmaxod_ydr354w_1,trial_on_rich_globalmaxod_ydr354w_1_result).
result(trial_on_rich_globalmaxod_ydr354w_1_result).
has_part(trial_on_rich_globalmaxod_ydr354w_1_result,trial_on_rich_globalmaxod_ydr354w_1_result_1).
has_representation(trial_on_rich_globalmaxod_ydr354w_1_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_ydr354w_1_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ydr354w_1_result_1,trial_on_rich_globalmaxod_ydr354w_1_result_1_proc).
procedure(trial_on_rich_globalmaxod_ydr354w_1_result_1_proc).
has_representation(trial_on_rich_globalmaxod_ydr354w_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ydr354w_1_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_ydr354w_1_result,trial_on_rich_globalmaxod_ydr354w_1_result_2).
has_representation(trial_on_rich_globalmaxod_ydr354w_1_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_ydr354w_1_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ydr354w_1_result_2,trial_on_rich_globalmaxod_ydr354w_1_result_2_proc).
procedure(trial_on_rich_globalmaxod_ydr354w_1_result_2_proc).
has_representation(trial_on_rich_globalmaxod_ydr354w_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ydr354w_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_ydr354w_2,trial_on_rich_globalmaxod_ydr354w_2_design).
design(trial_on_rich_globalmaxod_ydr354w_2_design).
has_proposition(trial_on_rich_globalmaxod_ydr354w_2_design,trial_on_rich_globalmaxod_ydr354w_2_factor).
factor(trial_on_rich_globalmaxod_ydr354w_2_factor).
has_representation(trial_on_rich_globalmaxod_ydr354w_2_factor,'presence or absence of ydr354w').
has_input(trial_on_rich_globalmaxod_ydr354w_2,trial_on_rich_globalmaxod_ydr354w_2_data).
data(trial_on_rich_globalmaxod_ydr354w_2_data).
has_part(trial_on_rich_globalmaxod_ydr354w_2_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_ydr354w_2_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_ydr354w_2_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_ydr354w_2,'nature-loop3_expt002-plate004').
plate('nature-loop3_expt002-plate004').
has_proposition(trial_on_rich_globalmaxod_ydr354w_2,trial_on_rich_globalmaxod_ydr354w_2_result).
result(trial_on_rich_globalmaxod_ydr354w_2_result).
has_part(trial_on_rich_globalmaxod_ydr354w_2_result,trial_on_rich_globalmaxod_ydr354w_2_result_1).
has_representation(trial_on_rich_globalmaxod_ydr354w_2_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_ydr354w_2_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ydr354w_2_result_1,trial_on_rich_globalmaxod_ydr354w_2_result_1_proc).
procedure(trial_on_rich_globalmaxod_ydr354w_2_result_1_proc).
has_representation(trial_on_rich_globalmaxod_ydr354w_2_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ydr354w_2_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_ydr354w_2_result,trial_on_rich_globalmaxod_ydr354w_2_result_2).
has_representation(trial_on_rich_globalmaxod_ydr354w_2_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_ydr354w_2_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ydr354w_2_result_2,trial_on_rich_globalmaxod_ydr354w_2_result_2_proc).
procedure(trial_on_rich_globalmaxod_ydr354w_2_result_2_proc).
has_representation(trial_on_rich_globalmaxod_ydr354w_2_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ydr354w_2_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_ydr354w_3,trial_on_rich_globalmaxod_ydr354w_3_design).
design(trial_on_rich_globalmaxod_ydr354w_3_design).
has_proposition(trial_on_rich_globalmaxod_ydr354w_3_design,trial_on_rich_globalmaxod_ydr354w_3_factor).
factor(trial_on_rich_globalmaxod_ydr354w_3_factor).
has_representation(trial_on_rich_globalmaxod_ydr354w_3_factor,'presence or absence of ydr354w').
has_input(trial_on_rich_globalmaxod_ydr354w_3,trial_on_rich_globalmaxod_ydr354w_3_data).
data(trial_on_rich_globalmaxod_ydr354w_3_data).
has_part(trial_on_rich_globalmaxod_ydr354w_3_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_ydr354w_3_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_ydr354w_3_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_ydr354w_3,'nature-loop3_expt003-plate005').
plate('nature-loop3_expt003-plate005').
has_proposition(trial_on_rich_globalmaxod_ydr354w_3,trial_on_rich_globalmaxod_ydr354w_3_result).
result(trial_on_rich_globalmaxod_ydr354w_3_result).
has_part(trial_on_rich_globalmaxod_ydr354w_3_result,trial_on_rich_globalmaxod_ydr354w_3_result_1).
has_representation(trial_on_rich_globalmaxod_ydr354w_3_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_ydr354w_3_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ydr354w_3_result_1,trial_on_rich_globalmaxod_ydr354w_3_result_1_proc).
procedure(trial_on_rich_globalmaxod_ydr354w_3_result_1_proc).
has_representation(trial_on_rich_globalmaxod_ydr354w_3_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ydr354w_3_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_ydr354w_3_result,trial_on_rich_globalmaxod_ydr354w_3_result_2).
has_representation(trial_on_rich_globalmaxod_ydr354w_3_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_ydr354w_3_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ydr354w_3_result_2,trial_on_rich_globalmaxod_ydr354w_3_result_2_proc).
procedure(trial_on_rich_globalmaxod_ydr354w_3_result_2_proc).
has_representation(trial_on_rich_globalmaxod_ydr354w_3_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ydr354w_3_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_ydr354w_4,trial_on_rich_globalmaxod_ydr354w_4_design).
design(trial_on_rich_globalmaxod_ydr354w_4_design).
has_proposition(trial_on_rich_globalmaxod_ydr354w_4_design,trial_on_rich_globalmaxod_ydr354w_4_factor).
factor(trial_on_rich_globalmaxod_ydr354w_4_factor).
has_representation(trial_on_rich_globalmaxod_ydr354w_4_factor,'presence or absence of ydr354w').
has_input(trial_on_rich_globalmaxod_ydr354w_4,trial_on_rich_globalmaxod_ydr354w_4_data).
data(trial_on_rich_globalmaxod_ydr354w_4_data).
has_part(trial_on_rich_globalmaxod_ydr354w_4_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_ydr354w_4_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_ydr354w_4_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_ydr354w_4,'nature-loop3_expt004-plate004').
plate('nature-loop3_expt004-plate004').
has_proposition(trial_on_rich_globalmaxod_ydr354w_4,trial_on_rich_globalmaxod_ydr354w_4_result).
result(trial_on_rich_globalmaxod_ydr354w_4_result).
has_part(trial_on_rich_globalmaxod_ydr354w_4_result,trial_on_rich_globalmaxod_ydr354w_4_result_1).
has_representation(trial_on_rich_globalmaxod_ydr354w_4_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_ydr354w_4_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ydr354w_4_result_1,trial_on_rich_globalmaxod_ydr354w_4_result_1_proc).
procedure(trial_on_rich_globalmaxod_ydr354w_4_result_1_proc).
has_representation(trial_on_rich_globalmaxod_ydr354w_4_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ydr354w_4_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_ydr354w_4_result,trial_on_rich_globalmaxod_ydr354w_4_result_2).
has_representation(trial_on_rich_globalmaxod_ydr354w_4_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_ydr354w_4_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ydr354w_4_result_2,trial_on_rich_globalmaxod_ydr354w_4_result_2_proc).
procedure(trial_on_rich_globalmaxod_ydr354w_4_result_2_proc).
has_representation(trial_on_rich_globalmaxod_ydr354w_4_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ydr354w_4_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_ydr354w_5,trial_on_rich_globalmaxod_ydr354w_5_design).
design(trial_on_rich_globalmaxod_ydr354w_5_design).
has_proposition(trial_on_rich_globalmaxod_ydr354w_5_design,trial_on_rich_globalmaxod_ydr354w_5_factor).
factor(trial_on_rich_globalmaxod_ydr354w_5_factor).
has_representation(trial_on_rich_globalmaxod_ydr354w_5_factor,'presence or absence of ydr354w').
has_input(trial_on_rich_globalmaxod_ydr354w_5,trial_on_rich_globalmaxod_ydr354w_5_data).
data(trial_on_rich_globalmaxod_ydr354w_5_data).
has_part(trial_on_rich_globalmaxod_ydr354w_5_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_ydr354w_5_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_ydr354w_5_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_ydr354w_5,'nature-loop3_expt005-plate004').
plate('nature-loop3_expt005-plate004').
has_proposition(trial_on_rich_globalmaxod_ydr354w_5,trial_on_rich_globalmaxod_ydr354w_5_result).
result(trial_on_rich_globalmaxod_ydr354w_5_result).
has_part(trial_on_rich_globalmaxod_ydr354w_5_result,trial_on_rich_globalmaxod_ydr354w_5_result_1).
has_representation(trial_on_rich_globalmaxod_ydr354w_5_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_ydr354w_5_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ydr354w_5_result_1,trial_on_rich_globalmaxod_ydr354w_5_result_1_proc).
procedure(trial_on_rich_globalmaxod_ydr354w_5_result_1_proc).
has_representation(trial_on_rich_globalmaxod_ydr354w_5_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ydr354w_5_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_ydr354w_5_result,trial_on_rich_globalmaxod_ydr354w_5_result_2).
has_representation(trial_on_rich_globalmaxod_ydr354w_5_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_ydr354w_5_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ydr354w_5_result_2,trial_on_rich_globalmaxod_ydr354w_5_result_2_proc).
procedure(trial_on_rich_globalmaxod_ydr354w_5_result_2_proc).
has_representation(trial_on_rich_globalmaxod_ydr354w_5_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ydr354w_5_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_ydr354w_6,trial_on_rich_globalmaxod_ydr354w_6_design).
design(trial_on_rich_globalmaxod_ydr354w_6_design).
has_proposition(trial_on_rich_globalmaxod_ydr354w_6_design,trial_on_rich_globalmaxod_ydr354w_6_factor).
factor(trial_on_rich_globalmaxod_ydr354w_6_factor).
has_representation(trial_on_rich_globalmaxod_ydr354w_6_factor,'presence or absence of ydr354w').
has_input(trial_on_rich_globalmaxod_ydr354w_6,trial_on_rich_globalmaxod_ydr354w_6_data).
data(trial_on_rich_globalmaxod_ydr354w_6_data).
has_part(trial_on_rich_globalmaxod_ydr354w_6_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_ydr354w_6_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_ydr354w_6_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_ydr354w_6,'nature-loop1_expt001-plate005').
plate('nature-loop1_expt001-plate005').
has_proposition(trial_on_rich_globalmaxod_ydr354w_6,trial_on_rich_globalmaxod_ydr354w_6_result).
result(trial_on_rich_globalmaxod_ydr354w_6_result).
has_part(trial_on_rich_globalmaxod_ydr354w_6_result,trial_on_rich_globalmaxod_ydr354w_6_result_1).
has_representation(trial_on_rich_globalmaxod_ydr354w_6_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_ydr354w_6_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ydr354w_6_result_1,trial_on_rich_globalmaxod_ydr354w_6_result_1_proc).
procedure(trial_on_rich_globalmaxod_ydr354w_6_result_1_proc).
has_representation(trial_on_rich_globalmaxod_ydr354w_6_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ydr354w_6_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_ydr354w_6_result,trial_on_rich_globalmaxod_ydr354w_6_result_2).
has_representation(trial_on_rich_globalmaxod_ydr354w_6_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_ydr354w_6_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ydr354w_6_result_2,trial_on_rich_globalmaxod_ydr354w_6_result_2_proc).
procedure(trial_on_rich_globalmaxod_ydr354w_6_result_2_proc).
has_representation(trial_on_rich_globalmaxod_ydr354w_6_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ydr354w_6_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_ydr354w_7,trial_on_rich_globalmaxod_ydr354w_7_design).
design(trial_on_rich_globalmaxod_ydr354w_7_design).
has_proposition(trial_on_rich_globalmaxod_ydr354w_7_design,trial_on_rich_globalmaxod_ydr354w_7_factor).
factor(trial_on_rich_globalmaxod_ydr354w_7_factor).
has_representation(trial_on_rich_globalmaxod_ydr354w_7_factor,'presence or absence of ydr354w').
has_input(trial_on_rich_globalmaxod_ydr354w_7,trial_on_rich_globalmaxod_ydr354w_7_data).
data(trial_on_rich_globalmaxod_ydr354w_7_data).
has_part(trial_on_rich_globalmaxod_ydr354w_7_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_ydr354w_7_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_ydr354w_7_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_ydr354w_7,'nature-loop2_expt001-plate004').
plate('nature-loop2_expt001-plate004').
has_proposition(trial_on_rich_globalmaxod_ydr354w_7,trial_on_rich_globalmaxod_ydr354w_7_result).
result(trial_on_rich_globalmaxod_ydr354w_7_result).
has_part(trial_on_rich_globalmaxod_ydr354w_7_result,trial_on_rich_globalmaxod_ydr354w_7_result_1).
has_representation(trial_on_rich_globalmaxod_ydr354w_7_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_ydr354w_7_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ydr354w_7_result_1,trial_on_rich_globalmaxod_ydr354w_7_result_1_proc).
procedure(trial_on_rich_globalmaxod_ydr354w_7_result_1_proc).
has_representation(trial_on_rich_globalmaxod_ydr354w_7_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ydr354w_7_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_ydr354w_7_result,trial_on_rich_globalmaxod_ydr354w_7_result_2).
has_representation(trial_on_rich_globalmaxod_ydr354w_7_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_ydr354w_7_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ydr354w_7_result_2,trial_on_rich_globalmaxod_ydr354w_7_result_2_proc).
procedure(trial_on_rich_globalmaxod_ydr354w_7_result_2_proc).
has_representation(trial_on_rich_globalmaxod_ydr354w_7_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ydr354w_7_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_ydr354w_8,trial_on_rich_globalmaxod_ydr354w_8_design).
design(trial_on_rich_globalmaxod_ydr354w_8_design).
has_proposition(trial_on_rich_globalmaxod_ydr354w_8_design,trial_on_rich_globalmaxod_ydr354w_8_factor).
factor(trial_on_rich_globalmaxod_ydr354w_8_factor).
has_representation(trial_on_rich_globalmaxod_ydr354w_8_factor,'presence or absence of ydr354w').
has_input(trial_on_rich_globalmaxod_ydr354w_8,trial_on_rich_globalmaxod_ydr354w_8_data).
data(trial_on_rich_globalmaxod_ydr354w_8_data).
has_part(trial_on_rich_globalmaxod_ydr354w_8_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_ydr354w_8_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_ydr354w_8_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_ydr354w_8,'nature-loop3_expt006-plate003').
plate('nature-loop3_expt006-plate003').
has_proposition(trial_on_rich_globalmaxod_ydr354w_8,trial_on_rich_globalmaxod_ydr354w_8_result).
result(trial_on_rich_globalmaxod_ydr354w_8_result).
has_part(trial_on_rich_globalmaxod_ydr354w_8_result,trial_on_rich_globalmaxod_ydr354w_8_result_1).
has_representation(trial_on_rich_globalmaxod_ydr354w_8_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_ydr354w_8_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ydr354w_8_result_1,trial_on_rich_globalmaxod_ydr354w_8_result_1_proc).
procedure(trial_on_rich_globalmaxod_ydr354w_8_result_1_proc).
has_representation(trial_on_rich_globalmaxod_ydr354w_8_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ydr354w_8_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_ydr354w_8_result,trial_on_rich_globalmaxod_ydr354w_8_result_2).
has_representation(trial_on_rich_globalmaxod_ydr354w_8_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_ydr354w_8_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ydr354w_8_result_2,trial_on_rich_globalmaxod_ydr354w_8_result_2_proc).
procedure(trial_on_rich_globalmaxod_ydr354w_8_result_2_proc).
has_representation(trial_on_rich_globalmaxod_ydr354w_8_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ydr354w_8_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_ydr354w,trial_on_rich_globalmaxod_ydr354w_results).
result(trial_on_rich_globalmaxod_ydr354w_results).
has_part(trial_on_rich_globalmaxod_ydr354w_results,trial_on_rich_globalmaxod_ydr354w_results_1).
has_representation(trial_on_rich_globalmaxod_ydr354w_results_1,'median of knockout medians missing ydr354w').
text_representation('median of knockout medians missing ydr354w').
has_proposition(trial_on_rich_globalmaxod_ydr354w_results_1,trial_on_rich_globalmaxod_ydr354w_results_1_proc).
procedure(trial_on_rich_globalmaxod_ydr354w_results_1_proc).
has_proposition(trial_on_rich_globalmaxod_ydr354w_results_1_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
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text_representation('median of wild type medians').
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link('procedures/remove_dupl_medians.R').
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text_representation('median of knockout on rich').
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link('proceduresplotKMedians.R').
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text_representation('median of wild type on rich').
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plate('nature-loop3_expt003-plate004').
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text_representation('median of knockout on rich').
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text_representation('median of wild type on rich').
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has_proposition(trial_on_rich_globalmaxod_yer090w_3_result_2,trial_on_rich_globalmaxod_yer090w_3_result_2_proc).
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text_representation('procedure for obtaining median').
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plate('nature-loop3_expt004-plate005').
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text_representation('median of knockout on rich').
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text_representation('procedure for obtaining median').
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text_representation('median of wild type on rich').
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text_representation('procedure for obtaining median').
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text_representation('median of knockout on rich').
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text_representation('median of wild type on rich').
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text_representation('procedure for obtaining median').
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link('../data/').
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plate('nature-loop2_expt001-plate007').
has_proposition(trial_on_rich_globalmaxod_yer090w_7,trial_on_rich_globalmaxod_yer090w_7_result).
result(trial_on_rich_globalmaxod_yer090w_7_result).
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text_representation('median of knockout on rich').
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link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_yer090w_7_result_1,trial_on_rich_globalmaxod_yer090w_7_result_1_proc).
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text_representation('procedure for obtaining median').
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link('proceduresplotKMedians.R').
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text_representation('median of wild type on rich').
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link('results/global_max_od_pgrowth_wmedians.txt').
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text_representation('procedure for obtaining median').
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link('procedures/plotWMedians.R').
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plate('nature-loop3_expt006-plate004').
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text_representation('median of knockout on rich').
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text_representation('procedure for obtaining median').
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link('proceduresplotKMedians.R').
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text_representation('median of wild type on rich').
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text_representation('procedure for obtaining median').
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link('procedures/plotWMedians.R').
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link('procedures/remove_dupl_medians.R').
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text_representation('median of wild type medians').
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link('results/overlayed_global_max_od0.8.tiff').
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link('procedures/plot2pretty.m').
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conclusion(study_on_rich_globalmaxod_conclusion).
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text_representation('The knockouts reach a lower global_max_od in rich than the wild type').
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text_representation('median of knockout on rich').
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link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_yer183c_1_result_1,trial_on_rich_globalmaxod_yer183c_1_result_1_proc).
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text_representation('procedure for obtaining median').
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link('proceduresplotKMedians.R').
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text_representation('median of wild type on rich').
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link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_yer183c_1_result_2,trial_on_rich_globalmaxod_yer183c_1_result_2_proc).
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text_representation('procedure for obtaining median').
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link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_yer183c_2,trial_on_rich_globalmaxod_yer183c_2_design).
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factor(trial_on_rich_globalmaxod_yer183c_2_factor).
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link('../data/').
located_in(trial_on_rich_globalmaxod_yer183c_2,'feb07-trial1_expt001-plate002').
plate('feb07-trial1_expt001-plate002').
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text_representation('median of knockout on rich').
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link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_yer183c_2_result_1,trial_on_rich_globalmaxod_yer183c_2_result_1_proc).
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text_representation('procedure for obtaining median').
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link('proceduresplotKMedians.R').
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text_representation('median of wild type on rich').
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link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_yer183c_2_result_2,trial_on_rich_globalmaxod_yer183c_2_result_2_proc).
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text_representation('procedure for obtaining median').
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link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_yer183c_3,trial_on_rich_globalmaxod_yer183c_3_design).
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link('../data/').
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text_representation('median of knockout on rich').
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link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_yer183c_3_result_1,trial_on_rich_globalmaxod_yer183c_3_result_1_proc).
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text_representation('procedure for obtaining median').
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link('proceduresplotKMedians.R').
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text_representation('median of wild type on rich').
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link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_yer183c_3_result_2,trial_on_rich_globalmaxod_yer183c_3_result_2_proc).
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text_representation('procedure for obtaining median').
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link('procedures/plotWMedians.R').
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factor(trial_on_rich_globalmaxod_yer183c_4_factor).
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has_proposition(trial_on_rich_globalmaxod_yer183c_4_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_yer183c_4,'feb07-trial1_expt001-plate004').
plate('feb07-trial1_expt001-plate004').
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text_representation('median of knockout on rich').
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link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_yer183c_4_result_1,trial_on_rich_globalmaxod_yer183c_4_result_1_proc).
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text_representation('procedure for obtaining median').
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link('proceduresplotKMedians.R').
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text_representation('median of wild type on rich').
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link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_yer183c_4_result_2,trial_on_rich_globalmaxod_yer183c_4_result_2_proc).
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has_representation(trial_on_rich_globalmaxod_yer183c_4_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_yer183c_4_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_yer183c,trial_on_rich_globalmaxod_yer183c_results).
result(trial_on_rich_globalmaxod_yer183c_results).
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has_representation(trial_on_rich_globalmaxod_yer183c_results_1,'median of knockout medians missing yer183c').
text_representation('median of knockout medians missing yer183c').
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procedure(trial_on_rich_globalmaxod_yer183c_results_1_proc).
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link('procedures/remove_dupl_medians.R').
has_part(trial_on_rich_globalmaxod_yer183c_results,trial_on_rich_globalmaxod_yer183c_results_2).
has_representation(trial_on_rich_globalmaxod_yer183c_results_2,'median of wild type medians').
text_representation('median of wild type medians').
has_proposition(trial_on_rich_globalmaxod_yer183c_results_2,trial_on_rich_globalmaxod_yer183c_results_2_proc).
procedure(trial_on_rich_globalmaxod_yer183c_results_2_proc).
has_proposition(trial_on_rich_globalmaxod_yer183c_results_2_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_rich_globalmaxod_yer183c_results,trial_on_rich_globalmaxod_yer183c_results_3).
has_representation(trial_on_rich_globalmaxod_yer183c_results_3,'difference between trial_on_rich_globalmaxod_yer183c_results_1 and trial_on_rich_globalmaxod_yer183c_results_2').
text_representation('difference between trial_on_rich_globalmaxod_yer183c_results_1 and trial_on_rich_globalmaxod_yer183c_results_2').
has_proposition(study_on_rich_globalmaxod,study_on_rich_globalmaxod_result).
result(study_on_rich_globalmaxod_result).
has_part(study_on_rich_globalmaxod_result,study_on_rich_globalmaxod_result_1).
has_representation(study_on_rich_globalmaxod_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_rich_globalmaxod_result_1,'results/wr_kr_global_max_od.csv').
link('results/wr_kr_global_max_od.csv').
has_proposition(study_on_rich_globalmaxod_result_1,study_on_rich_globalmaxod_result_1_proc).
procedure(study_on_rich_globalmaxod_result_1_proc).
has_proposition(study_on_rich_globalmaxod_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_rich_globalmaxod_result,study_on_rich_globalmaxod_result_2).
has_representation(study_on_rich_globalmaxod_result_2,'bar graph (histogram) plotting study_on_rich_globalmaxod_result_1').
text_representation('bar graph (histogram) plotting study_on_rich_globalmaxod_result_1').
has_proposition(study_on_rich_globalmaxod_result_2,'results/overlayed_global_max_od0.8.tiff').
link('results/overlayed_global_max_od0.8.tiff').
has_proposition(study_on_rich_globalmaxod_result_2,study_on_rich_globalmaxod_result_2_proc).
procedure(study_on_rich_globalmaxod_result_2_proc).
has_proposition(study_on_rich_globalmaxod_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_rich_globalmaxod,study_on_rich_globalmaxod_conclusion).
conclusion(study_on_rich_globalmaxod_conclusion).
has_representation(study_on_rich_globalmaxod_conclusion,'The knockouts reach a lower global_max_od in rich than the wild type').
text_representation('The knockouts reach a lower global_max_od in rich than the wild type').
has_proposition(study_on_rich_globalmaxod_conclusion,'obtain statistical mode of study_on_rich_globalmaxod_result_1').
procedure('obtain statistical mode of study_on_rich_globalmaxod_result_1').
text_representation('obtain statistical mode of study_on_rich_globalmaxod_result_1').
has_part(study_on_rich_globalmaxod,trial_on_rich_globalmaxod_yjl045w).
trial(trial_on_rich_globalmaxod_yjl045w).
has_agent(trial_on_rich_globalmaxod_yjl045w,yjl045w).
strain(yjl045w).
has_proposition(trial_on_rich_globalmaxod_yjl045w_1,trial_on_rich_globalmaxod_yjl045w_1_design).
design(trial_on_rich_globalmaxod_yjl045w_1_design).
has_proposition(trial_on_rich_globalmaxod_yjl045w_1_design,trial_on_rich_globalmaxod_yjl045w_1_factor).
factor(trial_on_rich_globalmaxod_yjl045w_1_factor).
has_representation(trial_on_rich_globalmaxod_yjl045w_1_factor,'presence or absence of yjl045w').
has_input(trial_on_rich_globalmaxod_yjl045w_1,trial_on_rich_globalmaxod_yjl045w_1_data).
data(trial_on_rich_globalmaxod_yjl045w_1_data).
has_part(trial_on_rich_globalmaxod_yjl045w_1_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_yjl045w_1_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_yjl045w_1_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_yjl045w_1,'mar07-trial7_expt001-plate001').
plate('mar07-trial7_expt001-plate001').
has_proposition(trial_on_rich_globalmaxod_yjl045w_1,trial_on_rich_globalmaxod_yjl045w_1_result).
result(trial_on_rich_globalmaxod_yjl045w_1_result).
has_part(trial_on_rich_globalmaxod_yjl045w_1_result,trial_on_rich_globalmaxod_yjl045w_1_result_1).
has_representation(trial_on_rich_globalmaxod_yjl045w_1_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_yjl045w_1_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_yjl045w_1_result_1,trial_on_rich_globalmaxod_yjl045w_1_result_1_proc).
procedure(trial_on_rich_globalmaxod_yjl045w_1_result_1_proc).
has_representation(trial_on_rich_globalmaxod_yjl045w_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_yjl045w_1_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_yjl045w_1_result,trial_on_rich_globalmaxod_yjl045w_1_result_2).
has_representation(trial_on_rich_globalmaxod_yjl045w_1_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_yjl045w_1_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_yjl045w_1_result_2,trial_on_rich_globalmaxod_yjl045w_1_result_2_proc).
procedure(trial_on_rich_globalmaxod_yjl045w_1_result_2_proc).
has_representation(trial_on_rich_globalmaxod_yjl045w_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_yjl045w_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_yjl045w,trial_on_rich_globalmaxod_yjl045w_results).
result(trial_on_rich_globalmaxod_yjl045w_results).
has_part(trial_on_rich_globalmaxod_yjl045w_results,trial_on_rich_globalmaxod_yjl045w_results_1).
has_representation(trial_on_rich_globalmaxod_yjl045w_results_1,'median of knockout medians missing yjl045w').
text_representation('median of knockout medians missing yjl045w').
has_proposition(trial_on_rich_globalmaxod_yjl045w_results_1,trial_on_rich_globalmaxod_yjl045w_results_1_proc).
procedure(trial_on_rich_globalmaxod_yjl045w_results_1_proc).
has_proposition(trial_on_rich_globalmaxod_yjl045w_results_1_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_rich_globalmaxod_yjl045w_results,trial_on_rich_globalmaxod_yjl045w_results_2).
has_representation(trial_on_rich_globalmaxod_yjl045w_results_2,'median of wild type medians').
text_representation('median of wild type medians').
has_proposition(trial_on_rich_globalmaxod_yjl045w_results_2,trial_on_rich_globalmaxod_yjl045w_results_2_proc).
procedure(trial_on_rich_globalmaxod_yjl045w_results_2_proc).
has_proposition(trial_on_rich_globalmaxod_yjl045w_results_2_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_rich_globalmaxod_yjl045w_results,trial_on_rich_globalmaxod_yjl045w_results_3).
has_representation(trial_on_rich_globalmaxod_yjl045w_results_3,'difference between trial_on_rich_globalmaxod_yjl045w_results_1 and trial_on_rich_globalmaxod_yjl045w_results_2').
text_representation('difference between trial_on_rich_globalmaxod_yjl045w_results_1 and trial_on_rich_globalmaxod_yjl045w_results_2').
has_proposition(study_on_rich_globalmaxod,study_on_rich_globalmaxod_result).
result(study_on_rich_globalmaxod_result).
has_part(study_on_rich_globalmaxod_result,study_on_rich_globalmaxod_result_1).
has_representation(study_on_rich_globalmaxod_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_rich_globalmaxod_result_1,'results/wr_kr_global_max_od.csv').
link('results/wr_kr_global_max_od.csv').
has_proposition(study_on_rich_globalmaxod_result_1,study_on_rich_globalmaxod_result_1_proc).
procedure(study_on_rich_globalmaxod_result_1_proc).
has_proposition(study_on_rich_globalmaxod_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_rich_globalmaxod_result,study_on_rich_globalmaxod_result_2).
has_representation(study_on_rich_globalmaxod_result_2,'bar graph (histogram) plotting study_on_rich_globalmaxod_result_1').
text_representation('bar graph (histogram) plotting study_on_rich_globalmaxod_result_1').
has_proposition(study_on_rich_globalmaxod_result_2,'results/overlayed_global_max_od0.8.tiff').
link('results/overlayed_global_max_od0.8.tiff').
has_proposition(study_on_rich_globalmaxod_result_2,study_on_rich_globalmaxod_result_2_proc).
procedure(study_on_rich_globalmaxod_result_2_proc).
has_proposition(study_on_rich_globalmaxod_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_rich_globalmaxod,study_on_rich_globalmaxod_conclusion).
conclusion(study_on_rich_globalmaxod_conclusion).
has_representation(study_on_rich_globalmaxod_conclusion,'The knockouts reach a lower global_max_od in rich than the wild type').
text_representation('The knockouts reach a lower global_max_od in rich than the wild type').
has_proposition(study_on_rich_globalmaxod_conclusion,'obtain statistical mode of study_on_rich_globalmaxod_result_1').
procedure('obtain statistical mode of study_on_rich_globalmaxod_result_1').
text_representation('obtain statistical mode of study_on_rich_globalmaxod_result_1').
has_part(study_on_rich_globalmaxod,trial_on_rich_globalmaxod_ynl316c).
trial(trial_on_rich_globalmaxod_ynl316c).
has_agent(trial_on_rich_globalmaxod_ynl316c,ynl316c).
strain(ynl316c).
has_proposition(trial_on_rich_globalmaxod_ynl316c_1,trial_on_rich_globalmaxod_ynl316c_1_design).
design(trial_on_rich_globalmaxod_ynl316c_1_design).
has_proposition(trial_on_rich_globalmaxod_ynl316c_1_design,trial_on_rich_globalmaxod_ynl316c_1_factor).
factor(trial_on_rich_globalmaxod_ynl316c_1_factor).
has_representation(trial_on_rich_globalmaxod_ynl316c_1_factor,'presence or absence of ynl316c').
has_input(trial_on_rich_globalmaxod_ynl316c_1,trial_on_rich_globalmaxod_ynl316c_1_data).
data(trial_on_rich_globalmaxod_ynl316c_1_data).
has_part(trial_on_rich_globalmaxod_ynl316c_1_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_ynl316c_1_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_ynl316c_1_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_ynl316c_1,'nature-loop3_expt001-plate001').
plate('nature-loop3_expt001-plate001').
has_proposition(trial_on_rich_globalmaxod_ynl316c_1,trial_on_rich_globalmaxod_ynl316c_1_result).
result(trial_on_rich_globalmaxod_ynl316c_1_result).
has_part(trial_on_rich_globalmaxod_ynl316c_1_result,trial_on_rich_globalmaxod_ynl316c_1_result_1).
has_representation(trial_on_rich_globalmaxod_ynl316c_1_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_ynl316c_1_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ynl316c_1_result_1,trial_on_rich_globalmaxod_ynl316c_1_result_1_proc).
procedure(trial_on_rich_globalmaxod_ynl316c_1_result_1_proc).
has_representation(trial_on_rich_globalmaxod_ynl316c_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ynl316c_1_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_ynl316c_1_result,trial_on_rich_globalmaxod_ynl316c_1_result_2).
has_representation(trial_on_rich_globalmaxod_ynl316c_1_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_ynl316c_1_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ynl316c_1_result_2,trial_on_rich_globalmaxod_ynl316c_1_result_2_proc).
procedure(trial_on_rich_globalmaxod_ynl316c_1_result_2_proc).
has_representation(trial_on_rich_globalmaxod_ynl316c_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ynl316c_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_ynl316c_2,trial_on_rich_globalmaxod_ynl316c_2_design).
design(trial_on_rich_globalmaxod_ynl316c_2_design).
has_proposition(trial_on_rich_globalmaxod_ynl316c_2_design,trial_on_rich_globalmaxod_ynl316c_2_factor).
factor(trial_on_rich_globalmaxod_ynl316c_2_factor).
has_representation(trial_on_rich_globalmaxod_ynl316c_2_factor,'presence or absence of ynl316c').
has_input(trial_on_rich_globalmaxod_ynl316c_2,trial_on_rich_globalmaxod_ynl316c_2_data).
data(trial_on_rich_globalmaxod_ynl316c_2_data).
has_part(trial_on_rich_globalmaxod_ynl316c_2_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_ynl316c_2_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_ynl316c_2_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_ynl316c_2,'nature-loop3_expt002-plate008').
plate('nature-loop3_expt002-plate008').
has_proposition(trial_on_rich_globalmaxod_ynl316c_2,trial_on_rich_globalmaxod_ynl316c_2_result).
result(trial_on_rich_globalmaxod_ynl316c_2_result).
has_part(trial_on_rich_globalmaxod_ynl316c_2_result,trial_on_rich_globalmaxod_ynl316c_2_result_1).
has_representation(trial_on_rich_globalmaxod_ynl316c_2_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_ynl316c_2_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ynl316c_2_result_1,trial_on_rich_globalmaxod_ynl316c_2_result_1_proc).
procedure(trial_on_rich_globalmaxod_ynl316c_2_result_1_proc).
has_representation(trial_on_rich_globalmaxod_ynl316c_2_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ynl316c_2_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_ynl316c_2_result,trial_on_rich_globalmaxod_ynl316c_2_result_2).
has_representation(trial_on_rich_globalmaxod_ynl316c_2_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_ynl316c_2_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ynl316c_2_result_2,trial_on_rich_globalmaxod_ynl316c_2_result_2_proc).
procedure(trial_on_rich_globalmaxod_ynl316c_2_result_2_proc).
has_representation(trial_on_rich_globalmaxod_ynl316c_2_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ynl316c_2_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_ynl316c_3,trial_on_rich_globalmaxod_ynl316c_3_design).
design(trial_on_rich_globalmaxod_ynl316c_3_design).
has_proposition(trial_on_rich_globalmaxod_ynl316c_3_design,trial_on_rich_globalmaxod_ynl316c_3_factor).
factor(trial_on_rich_globalmaxod_ynl316c_3_factor).
has_representation(trial_on_rich_globalmaxod_ynl316c_3_factor,'presence or absence of ynl316c').
has_input(trial_on_rich_globalmaxod_ynl316c_3,trial_on_rich_globalmaxod_ynl316c_3_data).
data(trial_on_rich_globalmaxod_ynl316c_3_data).
has_part(trial_on_rich_globalmaxod_ynl316c_3_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_ynl316c_3_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_ynl316c_3_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_ynl316c_3,'nature-loop3_expt003-plate001').
plate('nature-loop3_expt003-plate001').
has_proposition(trial_on_rich_globalmaxod_ynl316c_3,trial_on_rich_globalmaxod_ynl316c_3_result).
result(trial_on_rich_globalmaxod_ynl316c_3_result).
has_part(trial_on_rich_globalmaxod_ynl316c_3_result,trial_on_rich_globalmaxod_ynl316c_3_result_1).
has_representation(trial_on_rich_globalmaxod_ynl316c_3_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_ynl316c_3_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ynl316c_3_result_1,trial_on_rich_globalmaxod_ynl316c_3_result_1_proc).
procedure(trial_on_rich_globalmaxod_ynl316c_3_result_1_proc).
has_representation(trial_on_rich_globalmaxod_ynl316c_3_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ynl316c_3_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_ynl316c_3_result,trial_on_rich_globalmaxod_ynl316c_3_result_2).
has_representation(trial_on_rich_globalmaxod_ynl316c_3_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_ynl316c_3_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ynl316c_3_result_2,trial_on_rich_globalmaxod_ynl316c_3_result_2_proc).
procedure(trial_on_rich_globalmaxod_ynl316c_3_result_2_proc).
has_representation(trial_on_rich_globalmaxod_ynl316c_3_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ynl316c_3_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_ynl316c_4,trial_on_rich_globalmaxod_ynl316c_4_design).
design(trial_on_rich_globalmaxod_ynl316c_4_design).
has_proposition(trial_on_rich_globalmaxod_ynl316c_4_design,trial_on_rich_globalmaxod_ynl316c_4_factor).
factor(trial_on_rich_globalmaxod_ynl316c_4_factor).
has_representation(trial_on_rich_globalmaxod_ynl316c_4_factor,'presence or absence of ynl316c').
has_input(trial_on_rich_globalmaxod_ynl316c_4,trial_on_rich_globalmaxod_ynl316c_4_data).
data(trial_on_rich_globalmaxod_ynl316c_4_data).
has_part(trial_on_rich_globalmaxod_ynl316c_4_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_ynl316c_4_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_ynl316c_4_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_ynl316c_4,'nature-loop3_expt004-plate008').
plate('nature-loop3_expt004-plate008').
has_proposition(trial_on_rich_globalmaxod_ynl316c_4,trial_on_rich_globalmaxod_ynl316c_4_result).
result(trial_on_rich_globalmaxod_ynl316c_4_result).
has_part(trial_on_rich_globalmaxod_ynl316c_4_result,trial_on_rich_globalmaxod_ynl316c_4_result_1).
has_representation(trial_on_rich_globalmaxod_ynl316c_4_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_ynl316c_4_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ynl316c_4_result_1,trial_on_rich_globalmaxod_ynl316c_4_result_1_proc).
procedure(trial_on_rich_globalmaxod_ynl316c_4_result_1_proc).
has_representation(trial_on_rich_globalmaxod_ynl316c_4_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ynl316c_4_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_ynl316c_4_result,trial_on_rich_globalmaxod_ynl316c_4_result_2).
has_representation(trial_on_rich_globalmaxod_ynl316c_4_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_ynl316c_4_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ynl316c_4_result_2,trial_on_rich_globalmaxod_ynl316c_4_result_2_proc).
procedure(trial_on_rich_globalmaxod_ynl316c_4_result_2_proc).
has_representation(trial_on_rich_globalmaxod_ynl316c_4_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
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link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_ynl316c_5,trial_on_rich_globalmaxod_ynl316c_5_design).
design(trial_on_rich_globalmaxod_ynl316c_5_design).
has_proposition(trial_on_rich_globalmaxod_ynl316c_5_design,trial_on_rich_globalmaxod_ynl316c_5_factor).
factor(trial_on_rich_globalmaxod_ynl316c_5_factor).
has_representation(trial_on_rich_globalmaxod_ynl316c_5_factor,'presence or absence of ynl316c').
has_input(trial_on_rich_globalmaxod_ynl316c_5,trial_on_rich_globalmaxod_ynl316c_5_data).
data(trial_on_rich_globalmaxod_ynl316c_5_data).
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has_part(trial_on_rich_globalmaxod_ynl316c_5_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_ynl316c_5_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_ynl316c_5,'nature-loop3_expt005-plate008').
plate('nature-loop3_expt005-plate008').
has_proposition(trial_on_rich_globalmaxod_ynl316c_5,trial_on_rich_globalmaxod_ynl316c_5_result).
result(trial_on_rich_globalmaxod_ynl316c_5_result).
has_part(trial_on_rich_globalmaxod_ynl316c_5_result,trial_on_rich_globalmaxod_ynl316c_5_result_1).
has_representation(trial_on_rich_globalmaxod_ynl316c_5_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_ynl316c_5_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ynl316c_5_result_1,trial_on_rich_globalmaxod_ynl316c_5_result_1_proc).
procedure(trial_on_rich_globalmaxod_ynl316c_5_result_1_proc).
has_representation(trial_on_rich_globalmaxod_ynl316c_5_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ynl316c_5_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_ynl316c_5_result,trial_on_rich_globalmaxod_ynl316c_5_result_2).
has_representation(trial_on_rich_globalmaxod_ynl316c_5_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
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link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ynl316c_5_result_2,trial_on_rich_globalmaxod_ynl316c_5_result_2_proc).
procedure(trial_on_rich_globalmaxod_ynl316c_5_result_2_proc).
has_representation(trial_on_rich_globalmaxod_ynl316c_5_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
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link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_ynl316c_6,trial_on_rich_globalmaxod_ynl316c_6_design).
design(trial_on_rich_globalmaxod_ynl316c_6_design).
has_proposition(trial_on_rich_globalmaxod_ynl316c_6_design,trial_on_rich_globalmaxod_ynl316c_6_factor).
factor(trial_on_rich_globalmaxod_ynl316c_6_factor).
has_representation(trial_on_rich_globalmaxod_ynl316c_6_factor,'presence or absence of ynl316c').
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data(trial_on_rich_globalmaxod_ynl316c_6_data).
has_part(trial_on_rich_globalmaxod_ynl316c_6_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_ynl316c_6_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_ynl316c_6_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_ynl316c_6,'nature-loop1_expt001-plate001').
plate('nature-loop1_expt001-plate001').
has_proposition(trial_on_rich_globalmaxod_ynl316c_6,trial_on_rich_globalmaxod_ynl316c_6_result).
result(trial_on_rich_globalmaxod_ynl316c_6_result).
has_part(trial_on_rich_globalmaxod_ynl316c_6_result,trial_on_rich_globalmaxod_ynl316c_6_result_1).
has_representation(trial_on_rich_globalmaxod_ynl316c_6_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_ynl316c_6_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ynl316c_6_result_1,trial_on_rich_globalmaxod_ynl316c_6_result_1_proc).
procedure(trial_on_rich_globalmaxod_ynl316c_6_result_1_proc).
has_representation(trial_on_rich_globalmaxod_ynl316c_6_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
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link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_ynl316c_6_result,trial_on_rich_globalmaxod_ynl316c_6_result_2).
has_representation(trial_on_rich_globalmaxod_ynl316c_6_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
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link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ynl316c_6_result_2,trial_on_rich_globalmaxod_ynl316c_6_result_2_proc).
procedure(trial_on_rich_globalmaxod_ynl316c_6_result_2_proc).
has_representation(trial_on_rich_globalmaxod_ynl316c_6_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ynl316c_6_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_ynl316c_7,trial_on_rich_globalmaxod_ynl316c_7_design).
design(trial_on_rich_globalmaxod_ynl316c_7_design).
has_proposition(trial_on_rich_globalmaxod_ynl316c_7_design,trial_on_rich_globalmaxod_ynl316c_7_factor).
factor(trial_on_rich_globalmaxod_ynl316c_7_factor).
has_representation(trial_on_rich_globalmaxod_ynl316c_7_factor,'presence or absence of ynl316c').
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data(trial_on_rich_globalmaxod_ynl316c_7_data).
has_part(trial_on_rich_globalmaxod_ynl316c_7_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_ynl316c_7_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_ynl316c_7_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_ynl316c_7,'nature-loop2_expt001-plate008').
plate('nature-loop2_expt001-plate008').
has_proposition(trial_on_rich_globalmaxod_ynl316c_7,trial_on_rich_globalmaxod_ynl316c_7_result).
result(trial_on_rich_globalmaxod_ynl316c_7_result).
has_part(trial_on_rich_globalmaxod_ynl316c_7_result,trial_on_rich_globalmaxod_ynl316c_7_result_1).
has_representation(trial_on_rich_globalmaxod_ynl316c_7_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_ynl316c_7_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ynl316c_7_result_1,trial_on_rich_globalmaxod_ynl316c_7_result_1_proc).
procedure(trial_on_rich_globalmaxod_ynl316c_7_result_1_proc).
has_representation(trial_on_rich_globalmaxod_ynl316c_7_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ynl316c_7_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_ynl316c_7_result,trial_on_rich_globalmaxod_ynl316c_7_result_2).
has_representation(trial_on_rich_globalmaxod_ynl316c_7_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_ynl316c_7_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ynl316c_7_result_2,trial_on_rich_globalmaxod_ynl316c_7_result_2_proc).
procedure(trial_on_rich_globalmaxod_ynl316c_7_result_2_proc).
has_representation(trial_on_rich_globalmaxod_ynl316c_7_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ynl316c_7_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_ynl316c_8,trial_on_rich_globalmaxod_ynl316c_8_design).
design(trial_on_rich_globalmaxod_ynl316c_8_design).
has_proposition(trial_on_rich_globalmaxod_ynl316c_8_design,trial_on_rich_globalmaxod_ynl316c_8_factor).
factor(trial_on_rich_globalmaxod_ynl316c_8_factor).
has_representation(trial_on_rich_globalmaxod_ynl316c_8_factor,'presence or absence of ynl316c').
has_input(trial_on_rich_globalmaxod_ynl316c_8,trial_on_rich_globalmaxod_ynl316c_8_data).
data(trial_on_rich_globalmaxod_ynl316c_8_data).
has_part(trial_on_rich_globalmaxod_ynl316c_8_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_ynl316c_8_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_ynl316c_8_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_ynl316c_8,'nature-loop3_expt006-plate007').
plate('nature-loop3_expt006-plate007').
has_proposition(trial_on_rich_globalmaxod_ynl316c_8,trial_on_rich_globalmaxod_ynl316c_8_result).
result(trial_on_rich_globalmaxod_ynl316c_8_result).
has_part(trial_on_rich_globalmaxod_ynl316c_8_result,trial_on_rich_globalmaxod_ynl316c_8_result_1).
has_representation(trial_on_rich_globalmaxod_ynl316c_8_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_ynl316c_8_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ynl316c_8_result_1,trial_on_rich_globalmaxod_ynl316c_8_result_1_proc).
procedure(trial_on_rich_globalmaxod_ynl316c_8_result_1_proc).
has_representation(trial_on_rich_globalmaxod_ynl316c_8_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
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link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_ynl316c_8_result,trial_on_rich_globalmaxod_ynl316c_8_result_2).
has_representation(trial_on_rich_globalmaxod_ynl316c_8_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_ynl316c_8_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ynl316c_8_result_2,trial_on_rich_globalmaxod_ynl316c_8_result_2_proc).
procedure(trial_on_rich_globalmaxod_ynl316c_8_result_2_proc).
has_representation(trial_on_rich_globalmaxod_ynl316c_8_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ynl316c_8_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_ynl316c,trial_on_rich_globalmaxod_ynl316c_results).
result(trial_on_rich_globalmaxod_ynl316c_results).
has_part(trial_on_rich_globalmaxod_ynl316c_results,trial_on_rich_globalmaxod_ynl316c_results_1).
has_representation(trial_on_rich_globalmaxod_ynl316c_results_1,'median of knockout medians missing ynl316c').
text_representation('median of knockout medians missing ynl316c').
has_proposition(trial_on_rich_globalmaxod_ynl316c_results_1,trial_on_rich_globalmaxod_ynl316c_results_1_proc).
procedure(trial_on_rich_globalmaxod_ynl316c_results_1_proc).
has_proposition(trial_on_rich_globalmaxod_ynl316c_results_1_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_rich_globalmaxod_ynl316c_results,trial_on_rich_globalmaxod_ynl316c_results_2).
has_representation(trial_on_rich_globalmaxod_ynl316c_results_2,'median of wild type medians').
text_representation('median of wild type medians').
has_proposition(trial_on_rich_globalmaxod_ynl316c_results_2,trial_on_rich_globalmaxod_ynl316c_results_2_proc).
procedure(trial_on_rich_globalmaxod_ynl316c_results_2_proc).
has_proposition(trial_on_rich_globalmaxod_ynl316c_results_2_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_rich_globalmaxod_ynl316c_results,trial_on_rich_globalmaxod_ynl316c_results_3).
has_representation(trial_on_rich_globalmaxod_ynl316c_results_3,'difference between trial_on_rich_globalmaxod_ynl316c_results_1 and trial_on_rich_globalmaxod_ynl316c_results_2').
text_representation('difference between trial_on_rich_globalmaxod_ynl316c_results_1 and trial_on_rich_globalmaxod_ynl316c_results_2').
has_proposition(study_on_rich_globalmaxod,study_on_rich_globalmaxod_result).
result(study_on_rich_globalmaxod_result).
has_part(study_on_rich_globalmaxod_result,study_on_rich_globalmaxod_result_1).
has_representation(study_on_rich_globalmaxod_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_rich_globalmaxod_result_1,'results/wr_kr_global_max_od.csv').
link('results/wr_kr_global_max_od.csv').
has_proposition(study_on_rich_globalmaxod_result_1,study_on_rich_globalmaxod_result_1_proc).
procedure(study_on_rich_globalmaxod_result_1_proc).
has_proposition(study_on_rich_globalmaxod_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_rich_globalmaxod_result,study_on_rich_globalmaxod_result_2).
has_representation(study_on_rich_globalmaxod_result_2,'bar graph (histogram) plotting study_on_rich_globalmaxod_result_1').
text_representation('bar graph (histogram) plotting study_on_rich_globalmaxod_result_1').
has_proposition(study_on_rich_globalmaxod_result_2,'results/overlayed_global_max_od0.8.tiff').
link('results/overlayed_global_max_od0.8.tiff').
has_proposition(study_on_rich_globalmaxod_result_2,study_on_rich_globalmaxod_result_2_proc).
procedure(study_on_rich_globalmaxod_result_2_proc).
has_proposition(study_on_rich_globalmaxod_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_rich_globalmaxod,study_on_rich_globalmaxod_conclusion).
conclusion(study_on_rich_globalmaxod_conclusion).
has_representation(study_on_rich_globalmaxod_conclusion,'The knockouts reach a lower global_max_od in rich than the wild type').
text_representation('The knockouts reach a lower global_max_od in rich than the wild type').
has_proposition(study_on_rich_globalmaxod_conclusion,'obtain statistical mode of study_on_rich_globalmaxod_result_1').
procedure('obtain statistical mode of study_on_rich_globalmaxod_result_1').
text_representation('obtain statistical mode of study_on_rich_globalmaxod_result_1').
has_part(study_on_rich_globalmaxod,trial_on_rich_globalmaxod_ydl052c).
trial(trial_on_rich_globalmaxod_ydl052c).
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strain(ydl052c).
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design(trial_on_rich_globalmaxod_ydl052c_1_design).
has_proposition(trial_on_rich_globalmaxod_ydl052c_1_design,trial_on_rich_globalmaxod_ydl052c_1_factor).
factor(trial_on_rich_globalmaxod_ydl052c_1_factor).
has_representation(trial_on_rich_globalmaxod_ydl052c_1_factor,'presence or absence of ydl052c').
has_input(trial_on_rich_globalmaxod_ydl052c_1,trial_on_rich_globalmaxod_ydl052c_1_data).
data(trial_on_rich_globalmaxod_ydl052c_1_data).
has_part(trial_on_rich_globalmaxod_ydl052c_1_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_ydl052c_1_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_ydl052c_1_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_ydl052c_1,'feb07-trial1_expt001-plate010').
plate('feb07-trial1_expt001-plate010').
has_proposition(trial_on_rich_globalmaxod_ydl052c_1,trial_on_rich_globalmaxod_ydl052c_1_result).
result(trial_on_rich_globalmaxod_ydl052c_1_result).
has_part(trial_on_rich_globalmaxod_ydl052c_1_result,trial_on_rich_globalmaxod_ydl052c_1_result_1).
has_representation(trial_on_rich_globalmaxod_ydl052c_1_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_ydl052c_1_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ydl052c_1_result_1,trial_on_rich_globalmaxod_ydl052c_1_result_1_proc).
procedure(trial_on_rich_globalmaxod_ydl052c_1_result_1_proc).
has_representation(trial_on_rich_globalmaxod_ydl052c_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ydl052c_1_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_ydl052c_1_result,trial_on_rich_globalmaxod_ydl052c_1_result_2).
has_representation(trial_on_rich_globalmaxod_ydl052c_1_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_ydl052c_1_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ydl052c_1_result_2,trial_on_rich_globalmaxod_ydl052c_1_result_2_proc).
procedure(trial_on_rich_globalmaxod_ydl052c_1_result_2_proc).
has_representation(trial_on_rich_globalmaxod_ydl052c_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ydl052c_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_ydl052c_2,trial_on_rich_globalmaxod_ydl052c_2_design).
design(trial_on_rich_globalmaxod_ydl052c_2_design).
has_proposition(trial_on_rich_globalmaxod_ydl052c_2_design,trial_on_rich_globalmaxod_ydl052c_2_factor).
factor(trial_on_rich_globalmaxod_ydl052c_2_factor).
has_representation(trial_on_rich_globalmaxod_ydl052c_2_factor,'presence or absence of ydl052c').
has_input(trial_on_rich_globalmaxod_ydl052c_2,trial_on_rich_globalmaxod_ydl052c_2_data).
data(trial_on_rich_globalmaxod_ydl052c_2_data).
has_part(trial_on_rich_globalmaxod_ydl052c_2_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_ydl052c_2_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_ydl052c_2_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_ydl052c_2,'mar07-trial7_expt001-plate007').
plate('mar07-trial7_expt001-plate007').
has_proposition(trial_on_rich_globalmaxod_ydl052c_2,trial_on_rich_globalmaxod_ydl052c_2_result).
result(trial_on_rich_globalmaxod_ydl052c_2_result).
has_part(trial_on_rich_globalmaxod_ydl052c_2_result,trial_on_rich_globalmaxod_ydl052c_2_result_1).
has_representation(trial_on_rich_globalmaxod_ydl052c_2_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_ydl052c_2_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ydl052c_2_result_1,trial_on_rich_globalmaxod_ydl052c_2_result_1_proc).
procedure(trial_on_rich_globalmaxod_ydl052c_2_result_1_proc).
has_representation(trial_on_rich_globalmaxod_ydl052c_2_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ydl052c_2_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_ydl052c_2_result,trial_on_rich_globalmaxod_ydl052c_2_result_2).
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text_representation('median of wild type on rich').
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link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ydl052c_2_result_2,trial_on_rich_globalmaxod_ydl052c_2_result_2_proc).
procedure(trial_on_rich_globalmaxod_ydl052c_2_result_2_proc).
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text_representation('procedure for obtaining median').
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link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_ydl052c_3,trial_on_rich_globalmaxod_ydl052c_3_design).
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has_proposition(trial_on_rich_globalmaxod_ydl052c_3_design,trial_on_rich_globalmaxod_ydl052c_3_factor).
factor(trial_on_rich_globalmaxod_ydl052c_3_factor).
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data(trial_on_rich_globalmaxod_ydl052c_3_data).
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link('../data/').
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plate('mar07-trial7_expt001-plate008').
has_proposition(trial_on_rich_globalmaxod_ydl052c_3,trial_on_rich_globalmaxod_ydl052c_3_result).
result(trial_on_rich_globalmaxod_ydl052c_3_result).
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text_representation('median of knockout on rich').
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link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ydl052c_3_result_1,trial_on_rich_globalmaxod_ydl052c_3_result_1_proc).
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text_representation('procedure for obtaining median').
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link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_ydl052c_3_result,trial_on_rich_globalmaxod_ydl052c_3_result_2).
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text_representation('median of wild type on rich').
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link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ydl052c_3_result_2,trial_on_rich_globalmaxod_ydl052c_3_result_2_proc).
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text_representation('procedure for obtaining median').
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link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_ydl052c_4,trial_on_rich_globalmaxod_ydl052c_4_design).
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has_proposition(trial_on_rich_globalmaxod_ydl052c_4_design,trial_on_rich_globalmaxod_ydl052c_4_factor).
factor(trial_on_rich_globalmaxod_ydl052c_4_factor).
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data(trial_on_rich_globalmaxod_ydl052c_4_data).
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has_proposition(trial_on_rich_globalmaxod_ydl052c_4_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_ydl052c_4,'mar07-trial8_expt001-plate001').
plate('mar07-trial8_expt001-plate001').
has_proposition(trial_on_rich_globalmaxod_ydl052c_4,trial_on_rich_globalmaxod_ydl052c_4_result).
result(trial_on_rich_globalmaxod_ydl052c_4_result).
has_part(trial_on_rich_globalmaxod_ydl052c_4_result,trial_on_rich_globalmaxod_ydl052c_4_result_1).
has_representation(trial_on_rich_globalmaxod_ydl052c_4_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
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link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ydl052c_4_result_1,trial_on_rich_globalmaxod_ydl052c_4_result_1_proc).
procedure(trial_on_rich_globalmaxod_ydl052c_4_result_1_proc).
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text_representation('procedure for obtaining median').
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link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_ydl052c_4_result,trial_on_rich_globalmaxod_ydl052c_4_result_2).
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text_representation('median of wild type on rich').
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link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ydl052c_4_result_2,trial_on_rich_globalmaxod_ydl052c_4_result_2_proc).
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text_representation('procedure for obtaining median').
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link('procedures/plotWMedians.R').
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has_proposition(trial_on_rich_globalmaxod_ydl052c_5_design,trial_on_rich_globalmaxod_ydl052c_5_factor).
factor(trial_on_rich_globalmaxod_ydl052c_5_factor).
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data(trial_on_rich_globalmaxod_ydl052c_5_data).
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link('../data/').
located_in(trial_on_rich_globalmaxod_ydl052c_5,'mar07-trial8_expt001-plate002').
plate('mar07-trial8_expt001-plate002').
has_proposition(trial_on_rich_globalmaxod_ydl052c_5,trial_on_rich_globalmaxod_ydl052c_5_result).
result(trial_on_rich_globalmaxod_ydl052c_5_result).
has_part(trial_on_rich_globalmaxod_ydl052c_5_result,trial_on_rich_globalmaxod_ydl052c_5_result_1).
has_representation(trial_on_rich_globalmaxod_ydl052c_5_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
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link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ydl052c_5_result_1,trial_on_rich_globalmaxod_ydl052c_5_result_1_proc).
procedure(trial_on_rich_globalmaxod_ydl052c_5_result_1_proc).
has_representation(trial_on_rich_globalmaxod_ydl052c_5_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
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link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_ydl052c_5_result,trial_on_rich_globalmaxod_ydl052c_5_result_2).
has_representation(trial_on_rich_globalmaxod_ydl052c_5_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
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link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ydl052c_5_result_2,trial_on_rich_globalmaxod_ydl052c_5_result_2_proc).
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text_representation('procedure for obtaining median').
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link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_ydl052c_6,trial_on_rich_globalmaxod_ydl052c_6_design).
design(trial_on_rich_globalmaxod_ydl052c_6_design).
has_proposition(trial_on_rich_globalmaxod_ydl052c_6_design,trial_on_rich_globalmaxod_ydl052c_6_factor).
factor(trial_on_rich_globalmaxod_ydl052c_6_factor).
has_representation(trial_on_rich_globalmaxod_ydl052c_6_factor,'presence or absence of ydl052c').
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data(trial_on_rich_globalmaxod_ydl052c_6_data).
has_part(trial_on_rich_globalmaxod_ydl052c_6_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_ydl052c_6_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_ydl052c_6_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_ydl052c_6,'mar07-trial8_expt001-plate006').
plate('mar07-trial8_expt001-plate006').
has_proposition(trial_on_rich_globalmaxod_ydl052c_6,trial_on_rich_globalmaxod_ydl052c_6_result).
result(trial_on_rich_globalmaxod_ydl052c_6_result).
has_part(trial_on_rich_globalmaxod_ydl052c_6_result,trial_on_rich_globalmaxod_ydl052c_6_result_1).
has_representation(trial_on_rich_globalmaxod_ydl052c_6_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_ydl052c_6_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ydl052c_6_result_1,trial_on_rich_globalmaxod_ydl052c_6_result_1_proc).
procedure(trial_on_rich_globalmaxod_ydl052c_6_result_1_proc).
has_representation(trial_on_rich_globalmaxod_ydl052c_6_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
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link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_ydl052c_6_result,trial_on_rich_globalmaxod_ydl052c_6_result_2).
has_representation(trial_on_rich_globalmaxod_ydl052c_6_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_ydl052c_6_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ydl052c_6_result_2,trial_on_rich_globalmaxod_ydl052c_6_result_2_proc).
procedure(trial_on_rich_globalmaxod_ydl052c_6_result_2_proc).
has_representation(trial_on_rich_globalmaxod_ydl052c_6_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
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link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_ydl052c,trial_on_rich_globalmaxod_ydl052c_results).
result(trial_on_rich_globalmaxod_ydl052c_results).
has_part(trial_on_rich_globalmaxod_ydl052c_results,trial_on_rich_globalmaxod_ydl052c_results_1).
has_representation(trial_on_rich_globalmaxod_ydl052c_results_1,'median of knockout medians missing ydl052c').
text_representation('median of knockout medians missing ydl052c').
has_proposition(trial_on_rich_globalmaxod_ydl052c_results_1,trial_on_rich_globalmaxod_ydl052c_results_1_proc).
procedure(trial_on_rich_globalmaxod_ydl052c_results_1_proc).
has_proposition(trial_on_rich_globalmaxod_ydl052c_results_1_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_rich_globalmaxod_ydl052c_results,trial_on_rich_globalmaxod_ydl052c_results_2).
has_representation(trial_on_rich_globalmaxod_ydl052c_results_2,'median of wild type medians').
text_representation('median of wild type medians').
has_proposition(trial_on_rich_globalmaxod_ydl052c_results_2,trial_on_rich_globalmaxod_ydl052c_results_2_proc).
procedure(trial_on_rich_globalmaxod_ydl052c_results_2_proc).
has_proposition(trial_on_rich_globalmaxod_ydl052c_results_2_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_rich_globalmaxod_ydl052c_results,trial_on_rich_globalmaxod_ydl052c_results_3).
has_representation(trial_on_rich_globalmaxod_ydl052c_results_3,'difference between trial_on_rich_globalmaxod_ydl052c_results_1 and trial_on_rich_globalmaxod_ydl052c_results_2').
text_representation('difference between trial_on_rich_globalmaxod_ydl052c_results_1 and trial_on_rich_globalmaxod_ydl052c_results_2').
has_proposition(study_on_rich_globalmaxod,study_on_rich_globalmaxod_result).
result(study_on_rich_globalmaxod_result).
has_part(study_on_rich_globalmaxod_result,study_on_rich_globalmaxod_result_1).
has_representation(study_on_rich_globalmaxod_result_1,'vector of differences').
text_representation('vector of differences').
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link('results/wr_kr_global_max_od.csv').
has_proposition(study_on_rich_globalmaxod_result_1,study_on_rich_globalmaxod_result_1_proc).
procedure(study_on_rich_globalmaxod_result_1_proc).
has_proposition(study_on_rich_globalmaxod_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_rich_globalmaxod_result,study_on_rich_globalmaxod_result_2).
has_representation(study_on_rich_globalmaxod_result_2,'bar graph (histogram) plotting study_on_rich_globalmaxod_result_1').
text_representation('bar graph (histogram) plotting study_on_rich_globalmaxod_result_1').
has_proposition(study_on_rich_globalmaxod_result_2,'results/overlayed_global_max_od0.8.tiff').
link('results/overlayed_global_max_od0.8.tiff').
has_proposition(study_on_rich_globalmaxod_result_2,study_on_rich_globalmaxod_result_2_proc).
procedure(study_on_rich_globalmaxod_result_2_proc).
has_proposition(study_on_rich_globalmaxod_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_rich_globalmaxod,study_on_rich_globalmaxod_conclusion).
conclusion(study_on_rich_globalmaxod_conclusion).
has_representation(study_on_rich_globalmaxod_conclusion,'The knockouts reach a lower global_max_od in rich than the wild type').
text_representation('The knockouts reach a lower global_max_od in rich than the wild type').
has_proposition(study_on_rich_globalmaxod_conclusion,'obtain statistical mode of study_on_rich_globalmaxod_result_1').
procedure('obtain statistical mode of study_on_rich_globalmaxod_result_1').
text_representation('obtain statistical mode of study_on_rich_globalmaxod_result_1').
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trial(trial_on_rich_globalmaxod_yil033c).
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strain(yil033c).
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design(trial_on_rich_globalmaxod_yil033c_1_design).
has_proposition(trial_on_rich_globalmaxod_yil033c_1_design,trial_on_rich_globalmaxod_yil033c_1_factor).
factor(trial_on_rich_globalmaxod_yil033c_1_factor).
has_representation(trial_on_rich_globalmaxod_yil033c_1_factor,'presence or absence of yil033c').
has_input(trial_on_rich_globalmaxod_yil033c_1,trial_on_rich_globalmaxod_yil033c_1_data).
data(trial_on_rich_globalmaxod_yil033c_1_data).
has_part(trial_on_rich_globalmaxod_yil033c_1_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_yil033c_1_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_yil033c_1_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_yil033c_1,'mar07-trial5_expt001-plate001').
plate('mar07-trial5_expt001-plate001').
has_proposition(trial_on_rich_globalmaxod_yil033c_1,trial_on_rich_globalmaxod_yil033c_1_result).
result(trial_on_rich_globalmaxod_yil033c_1_result).
has_part(trial_on_rich_globalmaxod_yil033c_1_result,trial_on_rich_globalmaxod_yil033c_1_result_1).
has_representation(trial_on_rich_globalmaxod_yil033c_1_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_yil033c_1_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_yil033c_1_result_1,trial_on_rich_globalmaxod_yil033c_1_result_1_proc).
procedure(trial_on_rich_globalmaxod_yil033c_1_result_1_proc).
has_representation(trial_on_rich_globalmaxod_yil033c_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_yil033c_1_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_yil033c_1_result,trial_on_rich_globalmaxod_yil033c_1_result_2).
has_representation(trial_on_rich_globalmaxod_yil033c_1_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_yil033c_1_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_yil033c_1_result_2,trial_on_rich_globalmaxod_yil033c_1_result_2_proc).
procedure(trial_on_rich_globalmaxod_yil033c_1_result_2_proc).
has_representation(trial_on_rich_globalmaxod_yil033c_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_yil033c_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_yil033c_2,trial_on_rich_globalmaxod_yil033c_2_design).
design(trial_on_rich_globalmaxod_yil033c_2_design).
has_proposition(trial_on_rich_globalmaxod_yil033c_2_design,trial_on_rich_globalmaxod_yil033c_2_factor).
factor(trial_on_rich_globalmaxod_yil033c_2_factor).
has_representation(trial_on_rich_globalmaxod_yil033c_2_factor,'presence or absence of yil033c').
has_input(trial_on_rich_globalmaxod_yil033c_2,trial_on_rich_globalmaxod_yil033c_2_data).
data(trial_on_rich_globalmaxod_yil033c_2_data).
has_part(trial_on_rich_globalmaxod_yil033c_2_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_yil033c_2_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_yil033c_2_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_yil033c_2,'mar07-trial5_expt001-plate002').
plate('mar07-trial5_expt001-plate002').
has_proposition(trial_on_rich_globalmaxod_yil033c_2,trial_on_rich_globalmaxod_yil033c_2_result).
result(trial_on_rich_globalmaxod_yil033c_2_result).
has_part(trial_on_rich_globalmaxod_yil033c_2_result,trial_on_rich_globalmaxod_yil033c_2_result_1).
has_representation(trial_on_rich_globalmaxod_yil033c_2_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_yil033c_2_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_yil033c_2_result_1,trial_on_rich_globalmaxod_yil033c_2_result_1_proc).
procedure(trial_on_rich_globalmaxod_yil033c_2_result_1_proc).
has_representation(trial_on_rich_globalmaxod_yil033c_2_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_yil033c_2_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_yil033c_2_result,trial_on_rich_globalmaxod_yil033c_2_result_2).
has_representation(trial_on_rich_globalmaxod_yil033c_2_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_yil033c_2_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_yil033c_2_result_2,trial_on_rich_globalmaxod_yil033c_2_result_2_proc).
procedure(trial_on_rich_globalmaxod_yil033c_2_result_2_proc).
has_representation(trial_on_rich_globalmaxod_yil033c_2_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_yil033c_2_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_yil033c_3,trial_on_rich_globalmaxod_yil033c_3_design).
design(trial_on_rich_globalmaxod_yil033c_3_design).
has_proposition(trial_on_rich_globalmaxod_yil033c_3_design,trial_on_rich_globalmaxod_yil033c_3_factor).
factor(trial_on_rich_globalmaxod_yil033c_3_factor).
has_representation(trial_on_rich_globalmaxod_yil033c_3_factor,'presence or absence of yil033c').
has_input(trial_on_rich_globalmaxod_yil033c_3,trial_on_rich_globalmaxod_yil033c_3_data).
data(trial_on_rich_globalmaxod_yil033c_3_data).
has_part(trial_on_rich_globalmaxod_yil033c_3_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_yil033c_3_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_yil033c_3_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_yil033c_3,'mar07-trial5_expt001-plate003').
plate('mar07-trial5_expt001-plate003').
has_proposition(trial_on_rich_globalmaxod_yil033c_3,trial_on_rich_globalmaxod_yil033c_3_result).
result(trial_on_rich_globalmaxod_yil033c_3_result).
has_part(trial_on_rich_globalmaxod_yil033c_3_result,trial_on_rich_globalmaxod_yil033c_3_result_1).
has_representation(trial_on_rich_globalmaxod_yil033c_3_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_yil033c_3_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_yil033c_3_result_1,trial_on_rich_globalmaxod_yil033c_3_result_1_proc).
procedure(trial_on_rich_globalmaxod_yil033c_3_result_1_proc).
has_representation(trial_on_rich_globalmaxod_yil033c_3_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_yil033c_3_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_yil033c_3_result,trial_on_rich_globalmaxod_yil033c_3_result_2).
has_representation(trial_on_rich_globalmaxod_yil033c_3_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_yil033c_3_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_yil033c_3_result_2,trial_on_rich_globalmaxod_yil033c_3_result_2_proc).
procedure(trial_on_rich_globalmaxod_yil033c_3_result_2_proc).
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text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_yil033c_3_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_yil033c_4,trial_on_rich_globalmaxod_yil033c_4_design).
design(trial_on_rich_globalmaxod_yil033c_4_design).
has_proposition(trial_on_rich_globalmaxod_yil033c_4_design,trial_on_rich_globalmaxod_yil033c_4_factor).
factor(trial_on_rich_globalmaxod_yil033c_4_factor).
has_representation(trial_on_rich_globalmaxod_yil033c_4_factor,'presence or absence of yil033c').
has_input(trial_on_rich_globalmaxod_yil033c_4,trial_on_rich_globalmaxod_yil033c_4_data).
data(trial_on_rich_globalmaxod_yil033c_4_data).
has_part(trial_on_rich_globalmaxod_yil033c_4_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_yil033c_4_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_yil033c_4_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_yil033c_4,'mar07-trial6_expt001-plate003').
plate('mar07-trial6_expt001-plate003').
has_proposition(trial_on_rich_globalmaxod_yil033c_4,trial_on_rich_globalmaxod_yil033c_4_result).
result(trial_on_rich_globalmaxod_yil033c_4_result).
has_part(trial_on_rich_globalmaxod_yil033c_4_result,trial_on_rich_globalmaxod_yil033c_4_result_1).
has_representation(trial_on_rich_globalmaxod_yil033c_4_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_yil033c_4_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_yil033c_4_result_1,trial_on_rich_globalmaxod_yil033c_4_result_1_proc).
procedure(trial_on_rich_globalmaxod_yil033c_4_result_1_proc).
has_representation(trial_on_rich_globalmaxod_yil033c_4_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_yil033c_4_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_yil033c_4_result,trial_on_rich_globalmaxod_yil033c_4_result_2).
has_representation(trial_on_rich_globalmaxod_yil033c_4_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_yil033c_4_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_yil033c_4_result_2,trial_on_rich_globalmaxod_yil033c_4_result_2_proc).
procedure(trial_on_rich_globalmaxod_yil033c_4_result_2_proc).
has_representation(trial_on_rich_globalmaxod_yil033c_4_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_yil033c_4_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_yil033c_5,trial_on_rich_globalmaxod_yil033c_5_design).
design(trial_on_rich_globalmaxod_yil033c_5_design).
has_proposition(trial_on_rich_globalmaxod_yil033c_5_design,trial_on_rich_globalmaxod_yil033c_5_factor).
factor(trial_on_rich_globalmaxod_yil033c_5_factor).
has_representation(trial_on_rich_globalmaxod_yil033c_5_factor,'presence or absence of yil033c').
has_input(trial_on_rich_globalmaxod_yil033c_5,trial_on_rich_globalmaxod_yil033c_5_data).
data(trial_on_rich_globalmaxod_yil033c_5_data).
has_part(trial_on_rich_globalmaxod_yil033c_5_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_yil033c_5_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_yil033c_5_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_yil033c_5,'mar07-trial6_expt001-plate005').
plate('mar07-trial6_expt001-plate005').
has_proposition(trial_on_rich_globalmaxod_yil033c_5,trial_on_rich_globalmaxod_yil033c_5_result).
result(trial_on_rich_globalmaxod_yil033c_5_result).
has_part(trial_on_rich_globalmaxod_yil033c_5_result,trial_on_rich_globalmaxod_yil033c_5_result_1).
has_representation(trial_on_rich_globalmaxod_yil033c_5_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_yil033c_5_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_yil033c_5_result_1,trial_on_rich_globalmaxod_yil033c_5_result_1_proc).
procedure(trial_on_rich_globalmaxod_yil033c_5_result_1_proc).
has_representation(trial_on_rich_globalmaxod_yil033c_5_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_yil033c_5_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_yil033c_5_result,trial_on_rich_globalmaxod_yil033c_5_result_2).
has_representation(trial_on_rich_globalmaxod_yil033c_5_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_yil033c_5_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_yil033c_5_result_2,trial_on_rich_globalmaxod_yil033c_5_result_2_proc).
procedure(trial_on_rich_globalmaxod_yil033c_5_result_2_proc).
has_representation(trial_on_rich_globalmaxod_yil033c_5_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_yil033c_5_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_yil033c_6,trial_on_rich_globalmaxod_yil033c_6_design).
design(trial_on_rich_globalmaxod_yil033c_6_design).
has_proposition(trial_on_rich_globalmaxod_yil033c_6_design,trial_on_rich_globalmaxod_yil033c_6_factor).
factor(trial_on_rich_globalmaxod_yil033c_6_factor).
has_representation(trial_on_rich_globalmaxod_yil033c_6_factor,'presence or absence of yil033c').
has_input(trial_on_rich_globalmaxod_yil033c_6,trial_on_rich_globalmaxod_yil033c_6_data).
data(trial_on_rich_globalmaxod_yil033c_6_data).
has_part(trial_on_rich_globalmaxod_yil033c_6_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_yil033c_6_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_yil033c_6_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_yil033c_6,'mar07-trial7_expt001-plate003').
plate('mar07-trial7_expt001-plate003').
has_proposition(trial_on_rich_globalmaxod_yil033c_6,trial_on_rich_globalmaxod_yil033c_6_result).
result(trial_on_rich_globalmaxod_yil033c_6_result).
has_part(trial_on_rich_globalmaxod_yil033c_6_result,trial_on_rich_globalmaxod_yil033c_6_result_1).
has_representation(trial_on_rich_globalmaxod_yil033c_6_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_yil033c_6_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_yil033c_6_result_1,trial_on_rich_globalmaxod_yil033c_6_result_1_proc).
procedure(trial_on_rich_globalmaxod_yil033c_6_result_1_proc).
has_representation(trial_on_rich_globalmaxod_yil033c_6_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_yil033c_6_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_yil033c_6_result,trial_on_rich_globalmaxod_yil033c_6_result_2).
has_representation(trial_on_rich_globalmaxod_yil033c_6_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_yil033c_6_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_yil033c_6_result_2,trial_on_rich_globalmaxod_yil033c_6_result_2_proc).
procedure(trial_on_rich_globalmaxod_yil033c_6_result_2_proc).
has_representation(trial_on_rich_globalmaxod_yil033c_6_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_yil033c_6_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_yil033c_7,trial_on_rich_globalmaxod_yil033c_7_design).
design(trial_on_rich_globalmaxod_yil033c_7_design).
has_proposition(trial_on_rich_globalmaxod_yil033c_7_design,trial_on_rich_globalmaxod_yil033c_7_factor).
factor(trial_on_rich_globalmaxod_yil033c_7_factor).
has_representation(trial_on_rich_globalmaxod_yil033c_7_factor,'presence or absence of yil033c').
has_input(trial_on_rich_globalmaxod_yil033c_7,trial_on_rich_globalmaxod_yil033c_7_data).
data(trial_on_rich_globalmaxod_yil033c_7_data).
has_part(trial_on_rich_globalmaxod_yil033c_7_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_yil033c_7_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_yil033c_7_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_yil033c_7,'mar07-trial7_expt001-plate005').
plate('mar07-trial7_expt001-plate005').
has_proposition(trial_on_rich_globalmaxod_yil033c_7,trial_on_rich_globalmaxod_yil033c_7_result).
result(trial_on_rich_globalmaxod_yil033c_7_result).
has_part(trial_on_rich_globalmaxod_yil033c_7_result,trial_on_rich_globalmaxod_yil033c_7_result_1).
has_representation(trial_on_rich_globalmaxod_yil033c_7_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_yil033c_7_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_yil033c_7_result_1,trial_on_rich_globalmaxod_yil033c_7_result_1_proc).
procedure(trial_on_rich_globalmaxod_yil033c_7_result_1_proc).
has_representation(trial_on_rich_globalmaxod_yil033c_7_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_yil033c_7_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_yil033c_7_result,trial_on_rich_globalmaxod_yil033c_7_result_2).
has_representation(trial_on_rich_globalmaxod_yil033c_7_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_yil033c_7_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_yil033c_7_result_2,trial_on_rich_globalmaxod_yil033c_7_result_2_proc).
procedure(trial_on_rich_globalmaxod_yil033c_7_result_2_proc).
has_representation(trial_on_rich_globalmaxod_yil033c_7_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_yil033c_7_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_yil033c_8,trial_on_rich_globalmaxod_yil033c_8_design).
design(trial_on_rich_globalmaxod_yil033c_8_design).
has_proposition(trial_on_rich_globalmaxod_yil033c_8_design,trial_on_rich_globalmaxod_yil033c_8_factor).
factor(trial_on_rich_globalmaxod_yil033c_8_factor).
has_representation(trial_on_rich_globalmaxod_yil033c_8_factor,'presence or absence of yil033c').
has_input(trial_on_rich_globalmaxod_yil033c_8,trial_on_rich_globalmaxod_yil033c_8_data).
data(trial_on_rich_globalmaxod_yil033c_8_data).
has_part(trial_on_rich_globalmaxod_yil033c_8_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_yil033c_8_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_yil033c_8_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_yil033c_8,'mar07-trial8_expt001-plate003').
plate('mar07-trial8_expt001-plate003').
has_proposition(trial_on_rich_globalmaxod_yil033c_8,trial_on_rich_globalmaxod_yil033c_8_result).
result(trial_on_rich_globalmaxod_yil033c_8_result).
has_part(trial_on_rich_globalmaxod_yil033c_8_result,trial_on_rich_globalmaxod_yil033c_8_result_1).
has_representation(trial_on_rich_globalmaxod_yil033c_8_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_yil033c_8_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_yil033c_8_result_1,trial_on_rich_globalmaxod_yil033c_8_result_1_proc).
procedure(trial_on_rich_globalmaxod_yil033c_8_result_1_proc).
has_representation(trial_on_rich_globalmaxod_yil033c_8_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_yil033c_8_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_yil033c_8_result,trial_on_rich_globalmaxod_yil033c_8_result_2).
has_representation(trial_on_rich_globalmaxod_yil033c_8_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_yil033c_8_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_yil033c_8_result_2,trial_on_rich_globalmaxod_yil033c_8_result_2_proc).
procedure(trial_on_rich_globalmaxod_yil033c_8_result_2_proc).
has_representation(trial_on_rich_globalmaxod_yil033c_8_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_yil033c_8_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_yil033c_9,trial_on_rich_globalmaxod_yil033c_9_design).
design(trial_on_rich_globalmaxod_yil033c_9_design).
has_proposition(trial_on_rich_globalmaxod_yil033c_9_design,trial_on_rich_globalmaxod_yil033c_9_factor).
factor(trial_on_rich_globalmaxod_yil033c_9_factor).
has_representation(trial_on_rich_globalmaxod_yil033c_9_factor,'presence or absence of yil033c').
has_input(trial_on_rich_globalmaxod_yil033c_9,trial_on_rich_globalmaxod_yil033c_9_data).
data(trial_on_rich_globalmaxod_yil033c_9_data).
has_part(trial_on_rich_globalmaxod_yil033c_9_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_yil033c_9_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_yil033c_9_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_yil033c_9,'mar07-trial8_expt001-plate004').
plate('mar07-trial8_expt001-plate004').
has_proposition(trial_on_rich_globalmaxod_yil033c_9,trial_on_rich_globalmaxod_yil033c_9_result).
result(trial_on_rich_globalmaxod_yil033c_9_result).
has_part(trial_on_rich_globalmaxod_yil033c_9_result,trial_on_rich_globalmaxod_yil033c_9_result_1).
has_representation(trial_on_rich_globalmaxod_yil033c_9_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_yil033c_9_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_yil033c_9_result_1,trial_on_rich_globalmaxod_yil033c_9_result_1_proc).
procedure(trial_on_rich_globalmaxod_yil033c_9_result_1_proc).
has_representation(trial_on_rich_globalmaxod_yil033c_9_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_yil033c_9_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_yil033c_9_result,trial_on_rich_globalmaxod_yil033c_9_result_2).
has_representation(trial_on_rich_globalmaxod_yil033c_9_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_yil033c_9_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_yil033c_9_result_2,trial_on_rich_globalmaxod_yil033c_9_result_2_proc).
procedure(trial_on_rich_globalmaxod_yil033c_9_result_2_proc).
has_representation(trial_on_rich_globalmaxod_yil033c_9_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_yil033c_9_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_yil033c_10,trial_on_rich_globalmaxod_yil033c_10_design).
design(trial_on_rich_globalmaxod_yil033c_10_design).
has_proposition(trial_on_rich_globalmaxod_yil033c_10_design,trial_on_rich_globalmaxod_yil033c_10_factor).
factor(trial_on_rich_globalmaxod_yil033c_10_factor).
has_representation(trial_on_rich_globalmaxod_yil033c_10_factor,'presence or absence of yil033c').
has_input(trial_on_rich_globalmaxod_yil033c_10,trial_on_rich_globalmaxod_yil033c_10_data).
data(trial_on_rich_globalmaxod_yil033c_10_data).
has_part(trial_on_rich_globalmaxod_yil033c_10_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_yil033c_10_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_yil033c_10_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_yil033c_10,'mar07-trial8_expt001-plate005').
plate('mar07-trial8_expt001-plate005').
has_proposition(trial_on_rich_globalmaxod_yil033c_10,trial_on_rich_globalmaxod_yil033c_10_result).
result(trial_on_rich_globalmaxod_yil033c_10_result).
has_part(trial_on_rich_globalmaxod_yil033c_10_result,trial_on_rich_globalmaxod_yil033c_10_result_1).
has_representation(trial_on_rich_globalmaxod_yil033c_10_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_yil033c_10_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_yil033c_10_result_1,trial_on_rich_globalmaxod_yil033c_10_result_1_proc).
procedure(trial_on_rich_globalmaxod_yil033c_10_result_1_proc).
has_representation(trial_on_rich_globalmaxod_yil033c_10_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_yil033c_10_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_yil033c_10_result,trial_on_rich_globalmaxod_yil033c_10_result_2).
has_representation(trial_on_rich_globalmaxod_yil033c_10_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
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link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_yil033c_10_result_2,trial_on_rich_globalmaxod_yil033c_10_result_2_proc).
procedure(trial_on_rich_globalmaxod_yil033c_10_result_2_proc).
has_representation(trial_on_rich_globalmaxod_yil033c_10_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_yil033c_10_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_yil033c_11,trial_on_rich_globalmaxod_yil033c_11_design).
design(trial_on_rich_globalmaxod_yil033c_11_design).
has_proposition(trial_on_rich_globalmaxod_yil033c_11_design,trial_on_rich_globalmaxod_yil033c_11_factor).
factor(trial_on_rich_globalmaxod_yil033c_11_factor).
has_representation(trial_on_rich_globalmaxod_yil033c_11_factor,'presence or absence of yil033c').
has_input(trial_on_rich_globalmaxod_yil033c_11,trial_on_rich_globalmaxod_yil033c_11_data).
data(trial_on_rich_globalmaxod_yil033c_11_data).
has_part(trial_on_rich_globalmaxod_yil033c_11_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_yil033c_11_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_yil033c_11_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_yil033c_11,'mar07-trial8_expt001-plate007').
plate('mar07-trial8_expt001-plate007').
has_proposition(trial_on_rich_globalmaxod_yil033c_11,trial_on_rich_globalmaxod_yil033c_11_result).
result(trial_on_rich_globalmaxod_yil033c_11_result).
has_part(trial_on_rich_globalmaxod_yil033c_11_result,trial_on_rich_globalmaxod_yil033c_11_result_1).
has_representation(trial_on_rich_globalmaxod_yil033c_11_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_yil033c_11_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_yil033c_11_result_1,trial_on_rich_globalmaxod_yil033c_11_result_1_proc).
procedure(trial_on_rich_globalmaxod_yil033c_11_result_1_proc).
has_representation(trial_on_rich_globalmaxod_yil033c_11_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
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link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_yil033c_11_result,trial_on_rich_globalmaxod_yil033c_11_result_2).
has_representation(trial_on_rich_globalmaxod_yil033c_11_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_yil033c_11_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_yil033c_11_result_2,trial_on_rich_globalmaxod_yil033c_11_result_2_proc).
procedure(trial_on_rich_globalmaxod_yil033c_11_result_2_proc).
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text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_yil033c_11_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_yil033c,trial_on_rich_globalmaxod_yil033c_results).
result(trial_on_rich_globalmaxod_yil033c_results).
has_part(trial_on_rich_globalmaxod_yil033c_results,trial_on_rich_globalmaxod_yil033c_results_1).
has_representation(trial_on_rich_globalmaxod_yil033c_results_1,'median of knockout medians missing yil033c').
text_representation('median of knockout medians missing yil033c').
has_proposition(trial_on_rich_globalmaxod_yil033c_results_1,trial_on_rich_globalmaxod_yil033c_results_1_proc).
procedure(trial_on_rich_globalmaxod_yil033c_results_1_proc).
has_proposition(trial_on_rich_globalmaxod_yil033c_results_1_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_rich_globalmaxod_yil033c_results,trial_on_rich_globalmaxod_yil033c_results_2).
has_representation(trial_on_rich_globalmaxod_yil033c_results_2,'median of wild type medians').
text_representation('median of wild type medians').
has_proposition(trial_on_rich_globalmaxod_yil033c_results_2,trial_on_rich_globalmaxod_yil033c_results_2_proc).
procedure(trial_on_rich_globalmaxod_yil033c_results_2_proc).
has_proposition(trial_on_rich_globalmaxod_yil033c_results_2_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_rich_globalmaxod_yil033c_results,trial_on_rich_globalmaxod_yil033c_results_3).
has_representation(trial_on_rich_globalmaxod_yil033c_results_3,'difference between trial_on_rich_globalmaxod_yil033c_results_1 and trial_on_rich_globalmaxod_yil033c_results_2').
text_representation('difference between trial_on_rich_globalmaxod_yil033c_results_1 and trial_on_rich_globalmaxod_yil033c_results_2').
has_proposition(study_on_rich_globalmaxod,study_on_rich_globalmaxod_result).
result(study_on_rich_globalmaxod_result).
has_part(study_on_rich_globalmaxod_result,study_on_rich_globalmaxod_result_1).
has_representation(study_on_rich_globalmaxod_result_1,'vector of differences').
text_representation('vector of differences').
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link('results/wr_kr_global_max_od.csv').
has_proposition(study_on_rich_globalmaxod_result_1,study_on_rich_globalmaxod_result_1_proc).
procedure(study_on_rich_globalmaxod_result_1_proc).
has_proposition(study_on_rich_globalmaxod_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_rich_globalmaxod_result,study_on_rich_globalmaxod_result_2).
has_representation(study_on_rich_globalmaxod_result_2,'bar graph (histogram) plotting study_on_rich_globalmaxod_result_1').
text_representation('bar graph (histogram) plotting study_on_rich_globalmaxod_result_1').
has_proposition(study_on_rich_globalmaxod_result_2,'results/overlayed_global_max_od0.8.tiff').
link('results/overlayed_global_max_od0.8.tiff').
has_proposition(study_on_rich_globalmaxod_result_2,study_on_rich_globalmaxod_result_2_proc).
procedure(study_on_rich_globalmaxod_result_2_proc).
has_proposition(study_on_rich_globalmaxod_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_rich_globalmaxod,study_on_rich_globalmaxod_conclusion).
conclusion(study_on_rich_globalmaxod_conclusion).
has_representation(study_on_rich_globalmaxod_conclusion,'The knockouts reach a lower global_max_od in rich than the wild type').
text_representation('The knockouts reach a lower global_max_od in rich than the wild type').
has_proposition(study_on_rich_globalmaxod_conclusion,'obtain statistical mode of study_on_rich_globalmaxod_result_1').
procedure('obtain statistical mode of study_on_rich_globalmaxod_result_1').
text_representation('obtain statistical mode of study_on_rich_globalmaxod_result_1').
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trial(trial_on_rich_globalmaxod_ybr166c).
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strain(ybr166c).
has_proposition(trial_on_rich_globalmaxod_ybr166c_1,trial_on_rich_globalmaxod_ybr166c_1_design).
design(trial_on_rich_globalmaxod_ybr166c_1_design).
has_proposition(trial_on_rich_globalmaxod_ybr166c_1_design,trial_on_rich_globalmaxod_ybr166c_1_factor).
factor(trial_on_rich_globalmaxod_ybr166c_1_factor).
has_representation(trial_on_rich_globalmaxod_ybr166c_1_factor,'presence or absence of ybr166c').
has_input(trial_on_rich_globalmaxod_ybr166c_1,trial_on_rich_globalmaxod_ybr166c_1_data).
data(trial_on_rich_globalmaxod_ybr166c_1_data).
has_part(trial_on_rich_globalmaxod_ybr166c_1_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_ybr166c_1_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_ybr166c_1_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_ybr166c_1,'nature-loop3_expt001-plate008').
plate('nature-loop3_expt001-plate008').
has_proposition(trial_on_rich_globalmaxod_ybr166c_1,trial_on_rich_globalmaxod_ybr166c_1_result).
result(trial_on_rich_globalmaxod_ybr166c_1_result).
has_part(trial_on_rich_globalmaxod_ybr166c_1_result,trial_on_rich_globalmaxod_ybr166c_1_result_1).
has_representation(trial_on_rich_globalmaxod_ybr166c_1_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_ybr166c_1_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ybr166c_1_result_1,trial_on_rich_globalmaxod_ybr166c_1_result_1_proc).
procedure(trial_on_rich_globalmaxod_ybr166c_1_result_1_proc).
has_representation(trial_on_rich_globalmaxod_ybr166c_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ybr166c_1_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_ybr166c_1_result,trial_on_rich_globalmaxod_ybr166c_1_result_2).
has_representation(trial_on_rich_globalmaxod_ybr166c_1_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_ybr166c_1_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ybr166c_1_result_2,trial_on_rich_globalmaxod_ybr166c_1_result_2_proc).
procedure(trial_on_rich_globalmaxod_ybr166c_1_result_2_proc).
has_representation(trial_on_rich_globalmaxod_ybr166c_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ybr166c_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_ybr166c_2,trial_on_rich_globalmaxod_ybr166c_2_design).
design(trial_on_rich_globalmaxod_ybr166c_2_design).
has_proposition(trial_on_rich_globalmaxod_ybr166c_2_design,trial_on_rich_globalmaxod_ybr166c_2_factor).
factor(trial_on_rich_globalmaxod_ybr166c_2_factor).
has_representation(trial_on_rich_globalmaxod_ybr166c_2_factor,'presence or absence of ybr166c').
has_input(trial_on_rich_globalmaxod_ybr166c_2,trial_on_rich_globalmaxod_ybr166c_2_data).
data(trial_on_rich_globalmaxod_ybr166c_2_data).
has_part(trial_on_rich_globalmaxod_ybr166c_2_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_ybr166c_2_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_ybr166c_2_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_ybr166c_2,'nature-loop3_expt002-plate001').
plate('nature-loop3_expt002-plate001').
has_proposition(trial_on_rich_globalmaxod_ybr166c_2,trial_on_rich_globalmaxod_ybr166c_2_result).
result(trial_on_rich_globalmaxod_ybr166c_2_result).
has_part(trial_on_rich_globalmaxod_ybr166c_2_result,trial_on_rich_globalmaxod_ybr166c_2_result_1).
has_representation(trial_on_rich_globalmaxod_ybr166c_2_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_ybr166c_2_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ybr166c_2_result_1,trial_on_rich_globalmaxod_ybr166c_2_result_1_proc).
procedure(trial_on_rich_globalmaxod_ybr166c_2_result_1_proc).
has_representation(trial_on_rich_globalmaxod_ybr166c_2_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ybr166c_2_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_ybr166c_2_result,trial_on_rich_globalmaxod_ybr166c_2_result_2).
has_representation(trial_on_rich_globalmaxod_ybr166c_2_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_ybr166c_2_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ybr166c_2_result_2,trial_on_rich_globalmaxod_ybr166c_2_result_2_proc).
procedure(trial_on_rich_globalmaxod_ybr166c_2_result_2_proc).
has_representation(trial_on_rich_globalmaxod_ybr166c_2_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ybr166c_2_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_ybr166c_3,trial_on_rich_globalmaxod_ybr166c_3_design).
design(trial_on_rich_globalmaxod_ybr166c_3_design).
has_proposition(trial_on_rich_globalmaxod_ybr166c_3_design,trial_on_rich_globalmaxod_ybr166c_3_factor).
factor(trial_on_rich_globalmaxod_ybr166c_3_factor).
has_representation(trial_on_rich_globalmaxod_ybr166c_3_factor,'presence or absence of ybr166c').
has_input(trial_on_rich_globalmaxod_ybr166c_3,trial_on_rich_globalmaxod_ybr166c_3_data).
data(trial_on_rich_globalmaxod_ybr166c_3_data).
has_part(trial_on_rich_globalmaxod_ybr166c_3_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_ybr166c_3_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_ybr166c_3_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_ybr166c_3,'nature-loop3_expt003-plate008').
plate('nature-loop3_expt003-plate008').
has_proposition(trial_on_rich_globalmaxod_ybr166c_3,trial_on_rich_globalmaxod_ybr166c_3_result).
result(trial_on_rich_globalmaxod_ybr166c_3_result).
has_part(trial_on_rich_globalmaxod_ybr166c_3_result,trial_on_rich_globalmaxod_ybr166c_3_result_1).
has_representation(trial_on_rich_globalmaxod_ybr166c_3_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_ybr166c_3_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ybr166c_3_result_1,trial_on_rich_globalmaxod_ybr166c_3_result_1_proc).
procedure(trial_on_rich_globalmaxod_ybr166c_3_result_1_proc).
has_representation(trial_on_rich_globalmaxod_ybr166c_3_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ybr166c_3_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_ybr166c_3_result,trial_on_rich_globalmaxod_ybr166c_3_result_2).
has_representation(trial_on_rich_globalmaxod_ybr166c_3_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_ybr166c_3_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ybr166c_3_result_2,trial_on_rich_globalmaxod_ybr166c_3_result_2_proc).
procedure(trial_on_rich_globalmaxod_ybr166c_3_result_2_proc).
has_representation(trial_on_rich_globalmaxod_ybr166c_3_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ybr166c_3_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_ybr166c_4,trial_on_rich_globalmaxod_ybr166c_4_design).
design(trial_on_rich_globalmaxod_ybr166c_4_design).
has_proposition(trial_on_rich_globalmaxod_ybr166c_4_design,trial_on_rich_globalmaxod_ybr166c_4_factor).
factor(trial_on_rich_globalmaxod_ybr166c_4_factor).
has_representation(trial_on_rich_globalmaxod_ybr166c_4_factor,'presence or absence of ybr166c').
has_input(trial_on_rich_globalmaxod_ybr166c_4,trial_on_rich_globalmaxod_ybr166c_4_data).
data(trial_on_rich_globalmaxod_ybr166c_4_data).
has_part(trial_on_rich_globalmaxod_ybr166c_4_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_ybr166c_4_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_ybr166c_4_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_ybr166c_4,'nature-loop3_expt004-plate001').
plate('nature-loop3_expt004-plate001').
has_proposition(trial_on_rich_globalmaxod_ybr166c_4,trial_on_rich_globalmaxod_ybr166c_4_result).
result(trial_on_rich_globalmaxod_ybr166c_4_result).
has_part(trial_on_rich_globalmaxod_ybr166c_4_result,trial_on_rich_globalmaxod_ybr166c_4_result_1).
has_representation(trial_on_rich_globalmaxod_ybr166c_4_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_ybr166c_4_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ybr166c_4_result_1,trial_on_rich_globalmaxod_ybr166c_4_result_1_proc).
procedure(trial_on_rich_globalmaxod_ybr166c_4_result_1_proc).
has_representation(trial_on_rich_globalmaxod_ybr166c_4_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ybr166c_4_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_ybr166c_4_result,trial_on_rich_globalmaxod_ybr166c_4_result_2).
has_representation(trial_on_rich_globalmaxod_ybr166c_4_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_ybr166c_4_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ybr166c_4_result_2,trial_on_rich_globalmaxod_ybr166c_4_result_2_proc).
procedure(trial_on_rich_globalmaxod_ybr166c_4_result_2_proc).
has_representation(trial_on_rich_globalmaxod_ybr166c_4_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ybr166c_4_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_ybr166c_5,trial_on_rich_globalmaxod_ybr166c_5_design).
design(trial_on_rich_globalmaxod_ybr166c_5_design).
has_proposition(trial_on_rich_globalmaxod_ybr166c_5_design,trial_on_rich_globalmaxod_ybr166c_5_factor).
factor(trial_on_rich_globalmaxod_ybr166c_5_factor).
has_representation(trial_on_rich_globalmaxod_ybr166c_5_factor,'presence or absence of ybr166c').
has_input(trial_on_rich_globalmaxod_ybr166c_5,trial_on_rich_globalmaxod_ybr166c_5_data).
data(trial_on_rich_globalmaxod_ybr166c_5_data).
has_part(trial_on_rich_globalmaxod_ybr166c_5_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_ybr166c_5_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_ybr166c_5_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_ybr166c_5,'nature-loop3_expt005-plate001').
plate('nature-loop3_expt005-plate001').
has_proposition(trial_on_rich_globalmaxod_ybr166c_5,trial_on_rich_globalmaxod_ybr166c_5_result).
result(trial_on_rich_globalmaxod_ybr166c_5_result).
has_part(trial_on_rich_globalmaxod_ybr166c_5_result,trial_on_rich_globalmaxod_ybr166c_5_result_1).
has_representation(trial_on_rich_globalmaxod_ybr166c_5_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_ybr166c_5_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ybr166c_5_result_1,trial_on_rich_globalmaxod_ybr166c_5_result_1_proc).
procedure(trial_on_rich_globalmaxod_ybr166c_5_result_1_proc).
has_representation(trial_on_rich_globalmaxod_ybr166c_5_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ybr166c_5_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_ybr166c_5_result,trial_on_rich_globalmaxod_ybr166c_5_result_2).
has_representation(trial_on_rich_globalmaxod_ybr166c_5_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_ybr166c_5_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ybr166c_5_result_2,trial_on_rich_globalmaxod_ybr166c_5_result_2_proc).
procedure(trial_on_rich_globalmaxod_ybr166c_5_result_2_proc).
has_representation(trial_on_rich_globalmaxod_ybr166c_5_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ybr166c_5_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_ybr166c_6,trial_on_rich_globalmaxod_ybr166c_6_design).
design(trial_on_rich_globalmaxod_ybr166c_6_design).
has_proposition(trial_on_rich_globalmaxod_ybr166c_6_design,trial_on_rich_globalmaxod_ybr166c_6_factor).
factor(trial_on_rich_globalmaxod_ybr166c_6_factor).
has_representation(trial_on_rich_globalmaxod_ybr166c_6_factor,'presence or absence of ybr166c').
has_input(trial_on_rich_globalmaxod_ybr166c_6,trial_on_rich_globalmaxod_ybr166c_6_data).
data(trial_on_rich_globalmaxod_ybr166c_6_data).
has_part(trial_on_rich_globalmaxod_ybr166c_6_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_ybr166c_6_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_ybr166c_6_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_ybr166c_6,'nature-loop1_expt001-plate008').
plate('nature-loop1_expt001-plate008').
has_proposition(trial_on_rich_globalmaxod_ybr166c_6,trial_on_rich_globalmaxod_ybr166c_6_result).
result(trial_on_rich_globalmaxod_ybr166c_6_result).
has_part(trial_on_rich_globalmaxod_ybr166c_6_result,trial_on_rich_globalmaxod_ybr166c_6_result_1).
has_representation(trial_on_rich_globalmaxod_ybr166c_6_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_ybr166c_6_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ybr166c_6_result_1,trial_on_rich_globalmaxod_ybr166c_6_result_1_proc).
procedure(trial_on_rich_globalmaxod_ybr166c_6_result_1_proc).
has_representation(trial_on_rich_globalmaxod_ybr166c_6_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ybr166c_6_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_ybr166c_6_result,trial_on_rich_globalmaxod_ybr166c_6_result_2).
has_representation(trial_on_rich_globalmaxod_ybr166c_6_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_ybr166c_6_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ybr166c_6_result_2,trial_on_rich_globalmaxod_ybr166c_6_result_2_proc).
procedure(trial_on_rich_globalmaxod_ybr166c_6_result_2_proc).
has_representation(trial_on_rich_globalmaxod_ybr166c_6_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ybr166c_6_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_ybr166c_7,trial_on_rich_globalmaxod_ybr166c_7_design).
design(trial_on_rich_globalmaxod_ybr166c_7_design).
has_proposition(trial_on_rich_globalmaxod_ybr166c_7_design,trial_on_rich_globalmaxod_ybr166c_7_factor).
factor(trial_on_rich_globalmaxod_ybr166c_7_factor).
has_representation(trial_on_rich_globalmaxod_ybr166c_7_factor,'presence or absence of ybr166c').
has_input(trial_on_rich_globalmaxod_ybr166c_7,trial_on_rich_globalmaxod_ybr166c_7_data).
data(trial_on_rich_globalmaxod_ybr166c_7_data).
has_part(trial_on_rich_globalmaxod_ybr166c_7_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_ybr166c_7_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_ybr166c_7_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_ybr166c_7,'nature-loop2_expt001-plate001').
plate('nature-loop2_expt001-plate001').
has_proposition(trial_on_rich_globalmaxod_ybr166c_7,trial_on_rich_globalmaxod_ybr166c_7_result).
result(trial_on_rich_globalmaxod_ybr166c_7_result).
has_part(trial_on_rich_globalmaxod_ybr166c_7_result,trial_on_rich_globalmaxod_ybr166c_7_result_1).
has_representation(trial_on_rich_globalmaxod_ybr166c_7_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_ybr166c_7_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ybr166c_7_result_1,trial_on_rich_globalmaxod_ybr166c_7_result_1_proc).
procedure(trial_on_rich_globalmaxod_ybr166c_7_result_1_proc).
has_representation(trial_on_rich_globalmaxod_ybr166c_7_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ybr166c_7_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_ybr166c_7_result,trial_on_rich_globalmaxod_ybr166c_7_result_2).
has_representation(trial_on_rich_globalmaxod_ybr166c_7_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_ybr166c_7_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ybr166c_7_result_2,trial_on_rich_globalmaxod_ybr166c_7_result_2_proc).
procedure(trial_on_rich_globalmaxod_ybr166c_7_result_2_proc).
has_representation(trial_on_rich_globalmaxod_ybr166c_7_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ybr166c_7_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_ybr166c,trial_on_rich_globalmaxod_ybr166c_results).
result(trial_on_rich_globalmaxod_ybr166c_results).
has_part(trial_on_rich_globalmaxod_ybr166c_results,trial_on_rich_globalmaxod_ybr166c_results_1).
has_representation(trial_on_rich_globalmaxod_ybr166c_results_1,'median of knockout medians missing ybr166c').
text_representation('median of knockout medians missing ybr166c').
has_proposition(trial_on_rich_globalmaxod_ybr166c_results_1,trial_on_rich_globalmaxod_ybr166c_results_1_proc).
procedure(trial_on_rich_globalmaxod_ybr166c_results_1_proc).
has_proposition(trial_on_rich_globalmaxod_ybr166c_results_1_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_rich_globalmaxod_ybr166c_results,trial_on_rich_globalmaxod_ybr166c_results_2).
has_representation(trial_on_rich_globalmaxod_ybr166c_results_2,'median of wild type medians').
text_representation('median of wild type medians').
has_proposition(trial_on_rich_globalmaxod_ybr166c_results_2,trial_on_rich_globalmaxod_ybr166c_results_2_proc).
procedure(trial_on_rich_globalmaxod_ybr166c_results_2_proc).
has_proposition(trial_on_rich_globalmaxod_ybr166c_results_2_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_rich_globalmaxod_ybr166c_results,trial_on_rich_globalmaxod_ybr166c_results_3).
has_representation(trial_on_rich_globalmaxod_ybr166c_results_3,'difference between trial_on_rich_globalmaxod_ybr166c_results_1 and trial_on_rich_globalmaxod_ybr166c_results_2').
text_representation('difference between trial_on_rich_globalmaxod_ybr166c_results_1 and trial_on_rich_globalmaxod_ybr166c_results_2').
has_proposition(study_on_rich_globalmaxod,study_on_rich_globalmaxod_result).
result(study_on_rich_globalmaxod_result).
has_part(study_on_rich_globalmaxod_result,study_on_rich_globalmaxod_result_1).
has_representation(study_on_rich_globalmaxod_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_rich_globalmaxod_result_1,'results/wr_kr_global_max_od.csv').
link('results/wr_kr_global_max_od.csv').
has_proposition(study_on_rich_globalmaxod_result_1,study_on_rich_globalmaxod_result_1_proc).
procedure(study_on_rich_globalmaxod_result_1_proc).
has_proposition(study_on_rich_globalmaxod_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_rich_globalmaxod_result,study_on_rich_globalmaxod_result_2).
has_representation(study_on_rich_globalmaxod_result_2,'bar graph (histogram) plotting study_on_rich_globalmaxod_result_1').
text_representation('bar graph (histogram) plotting study_on_rich_globalmaxod_result_1').
has_proposition(study_on_rich_globalmaxod_result_2,'results/overlayed_global_max_od0.8.tiff').
link('results/overlayed_global_max_od0.8.tiff').
has_proposition(study_on_rich_globalmaxod_result_2,study_on_rich_globalmaxod_result_2_proc).
procedure(study_on_rich_globalmaxod_result_2_proc).
has_proposition(study_on_rich_globalmaxod_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_rich_globalmaxod,study_on_rich_globalmaxod_conclusion).
conclusion(study_on_rich_globalmaxod_conclusion).
has_representation(study_on_rich_globalmaxod_conclusion,'The knockouts reach a lower global_max_od in rich than the wild type').
text_representation('The knockouts reach a lower global_max_od in rich than the wild type').
has_proposition(study_on_rich_globalmaxod_conclusion,'obtain statistical mode of study_on_rich_globalmaxod_result_1').
procedure('obtain statistical mode of study_on_rich_globalmaxod_result_1').
text_representation('obtain statistical mode of study_on_rich_globalmaxod_result_1').
has_part(study_on_rich_globalmaxod,trial_on_rich_globalmaxod_ydl168w).
trial(trial_on_rich_globalmaxod_ydl168w).
has_agent(trial_on_rich_globalmaxod_ydl168w,ydl168w).
strain(ydl168w).
has_proposition(trial_on_rich_globalmaxod_ydl168w_1,trial_on_rich_globalmaxod_ydl168w_1_design).
design(trial_on_rich_globalmaxod_ydl168w_1_design).
has_proposition(trial_on_rich_globalmaxod_ydl168w_1_design,trial_on_rich_globalmaxod_ydl168w_1_factor).
factor(trial_on_rich_globalmaxod_ydl168w_1_factor).
has_representation(trial_on_rich_globalmaxod_ydl168w_1_factor,'presence or absence of ydl168w').
has_input(trial_on_rich_globalmaxod_ydl168w_1,trial_on_rich_globalmaxod_ydl168w_1_data).
data(trial_on_rich_globalmaxod_ydl168w_1_data).
has_part(trial_on_rich_globalmaxod_ydl168w_1_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_ydl168w_1_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_ydl168w_1_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_ydl168w_1,'feb07-single1_expt001-plate001').
plate('feb07-single1_expt001-plate001').
has_proposition(trial_on_rich_globalmaxod_ydl168w_1,trial_on_rich_globalmaxod_ydl168w_1_result).
result(trial_on_rich_globalmaxod_ydl168w_1_result).
has_part(trial_on_rich_globalmaxod_ydl168w_1_result,trial_on_rich_globalmaxod_ydl168w_1_result_1).
has_representation(trial_on_rich_globalmaxod_ydl168w_1_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_ydl168w_1_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ydl168w_1_result_1,trial_on_rich_globalmaxod_ydl168w_1_result_1_proc).
procedure(trial_on_rich_globalmaxod_ydl168w_1_result_1_proc).
has_representation(trial_on_rich_globalmaxod_ydl168w_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ydl168w_1_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_ydl168w_1_result,trial_on_rich_globalmaxod_ydl168w_1_result_2).
has_representation(trial_on_rich_globalmaxod_ydl168w_1_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_ydl168w_1_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ydl168w_1_result_2,trial_on_rich_globalmaxod_ydl168w_1_result_2_proc).
procedure(trial_on_rich_globalmaxod_ydl168w_1_result_2_proc).
has_representation(trial_on_rich_globalmaxod_ydl168w_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ydl168w_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_ydl168w_2,trial_on_rich_globalmaxod_ydl168w_2_design).
design(trial_on_rich_globalmaxod_ydl168w_2_design).
has_proposition(trial_on_rich_globalmaxod_ydl168w_2_design,trial_on_rich_globalmaxod_ydl168w_2_factor).
factor(trial_on_rich_globalmaxod_ydl168w_2_factor).
has_representation(trial_on_rich_globalmaxod_ydl168w_2_factor,'presence or absence of ydl168w').
has_input(trial_on_rich_globalmaxod_ydl168w_2,trial_on_rich_globalmaxod_ydl168w_2_data).
data(trial_on_rich_globalmaxod_ydl168w_2_data).
has_part(trial_on_rich_globalmaxod_ydl168w_2_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_ydl168w_2_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_ydl168w_2_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_ydl168w_2,'jan07-single3_expt001-plate001').
plate('jan07-single3_expt001-plate001').
has_proposition(trial_on_rich_globalmaxod_ydl168w_2,trial_on_rich_globalmaxod_ydl168w_2_result).
result(trial_on_rich_globalmaxod_ydl168w_2_result).
has_part(trial_on_rich_globalmaxod_ydl168w_2_result,trial_on_rich_globalmaxod_ydl168w_2_result_1).
has_representation(trial_on_rich_globalmaxod_ydl168w_2_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_ydl168w_2_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ydl168w_2_result_1,trial_on_rich_globalmaxod_ydl168w_2_result_1_proc).
procedure(trial_on_rich_globalmaxod_ydl168w_2_result_1_proc).
has_representation(trial_on_rich_globalmaxod_ydl168w_2_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ydl168w_2_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_ydl168w_2_result,trial_on_rich_globalmaxod_ydl168w_2_result_2).
has_representation(trial_on_rich_globalmaxod_ydl168w_2_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_ydl168w_2_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ydl168w_2_result_2,trial_on_rich_globalmaxod_ydl168w_2_result_2_proc).
procedure(trial_on_rich_globalmaxod_ydl168w_2_result_2_proc).
has_representation(trial_on_rich_globalmaxod_ydl168w_2_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ydl168w_2_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_ydl168w_3,trial_on_rich_globalmaxod_ydl168w_3_design).
design(trial_on_rich_globalmaxod_ydl168w_3_design).
has_proposition(trial_on_rich_globalmaxod_ydl168w_3_design,trial_on_rich_globalmaxod_ydl168w_3_factor).
factor(trial_on_rich_globalmaxod_ydl168w_3_factor).
has_representation(trial_on_rich_globalmaxod_ydl168w_3_factor,'presence or absence of ydl168w').
has_input(trial_on_rich_globalmaxod_ydl168w_3,trial_on_rich_globalmaxod_ydl168w_3_data).
data(trial_on_rich_globalmaxod_ydl168w_3_data).
has_part(trial_on_rich_globalmaxod_ydl168w_3_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_ydl168w_3_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_ydl168w_3_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_ydl168w_3,'jan07-trial1_expt001-plate001').
plate('jan07-trial1_expt001-plate001').
has_proposition(trial_on_rich_globalmaxod_ydl168w_3,trial_on_rich_globalmaxod_ydl168w_3_result).
result(trial_on_rich_globalmaxod_ydl168w_3_result).
has_part(trial_on_rich_globalmaxod_ydl168w_3_result,trial_on_rich_globalmaxod_ydl168w_3_result_1).
has_representation(trial_on_rich_globalmaxod_ydl168w_3_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_ydl168w_3_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ydl168w_3_result_1,trial_on_rich_globalmaxod_ydl168w_3_result_1_proc).
procedure(trial_on_rich_globalmaxod_ydl168w_3_result_1_proc).
has_representation(trial_on_rich_globalmaxod_ydl168w_3_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ydl168w_3_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_ydl168w_3_result,trial_on_rich_globalmaxod_ydl168w_3_result_2).
has_representation(trial_on_rich_globalmaxod_ydl168w_3_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_ydl168w_3_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ydl168w_3_result_2,trial_on_rich_globalmaxod_ydl168w_3_result_2_proc).
procedure(trial_on_rich_globalmaxod_ydl168w_3_result_2_proc).
has_representation(trial_on_rich_globalmaxod_ydl168w_3_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ydl168w_3_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_ydl168w_4,trial_on_rich_globalmaxod_ydl168w_4_design).
design(trial_on_rich_globalmaxod_ydl168w_4_design).
has_proposition(trial_on_rich_globalmaxod_ydl168w_4_design,trial_on_rich_globalmaxod_ydl168w_4_factor).
factor(trial_on_rich_globalmaxod_ydl168w_4_factor).
has_representation(trial_on_rich_globalmaxod_ydl168w_4_factor,'presence or absence of ydl168w').
has_input(trial_on_rich_globalmaxod_ydl168w_4,trial_on_rich_globalmaxod_ydl168w_4_data).
data(trial_on_rich_globalmaxod_ydl168w_4_data).
has_part(trial_on_rich_globalmaxod_ydl168w_4_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_ydl168w_4_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_ydl168w_4_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_ydl168w_4,'jan07-trial1_expt001-plate008').
plate('jan07-trial1_expt001-plate008').
has_proposition(trial_on_rich_globalmaxod_ydl168w_4,trial_on_rich_globalmaxod_ydl168w_4_result).
result(trial_on_rich_globalmaxod_ydl168w_4_result).
has_part(trial_on_rich_globalmaxod_ydl168w_4_result,trial_on_rich_globalmaxod_ydl168w_4_result_1).
has_representation(trial_on_rich_globalmaxod_ydl168w_4_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_ydl168w_4_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ydl168w_4_result_1,trial_on_rich_globalmaxod_ydl168w_4_result_1_proc).
procedure(trial_on_rich_globalmaxod_ydl168w_4_result_1_proc).
has_representation(trial_on_rich_globalmaxod_ydl168w_4_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ydl168w_4_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_ydl168w_4_result,trial_on_rich_globalmaxod_ydl168w_4_result_2).
has_representation(trial_on_rich_globalmaxod_ydl168w_4_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_ydl168w_4_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ydl168w_4_result_2,trial_on_rich_globalmaxod_ydl168w_4_result_2_proc).
procedure(trial_on_rich_globalmaxod_ydl168w_4_result_2_proc).
has_representation(trial_on_rich_globalmaxod_ydl168w_4_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ydl168w_4_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_ydl168w_5,trial_on_rich_globalmaxod_ydl168w_5_design).
design(trial_on_rich_globalmaxod_ydl168w_5_design).
has_proposition(trial_on_rich_globalmaxod_ydl168w_5_design,trial_on_rich_globalmaxod_ydl168w_5_factor).
factor(trial_on_rich_globalmaxod_ydl168w_5_factor).
has_representation(trial_on_rich_globalmaxod_ydl168w_5_factor,'presence or absence of ydl168w').
has_input(trial_on_rich_globalmaxod_ydl168w_5,trial_on_rich_globalmaxod_ydl168w_5_data).
data(trial_on_rich_globalmaxod_ydl168w_5_data).
has_part(trial_on_rich_globalmaxod_ydl168w_5_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_ydl168w_5_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_ydl168w_5_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_ydl168w_5,'jan07-trial2_expt001-plate003').
plate('jan07-trial2_expt001-plate003').
has_proposition(trial_on_rich_globalmaxod_ydl168w_5,trial_on_rich_globalmaxod_ydl168w_5_result).
result(trial_on_rich_globalmaxod_ydl168w_5_result).
has_part(trial_on_rich_globalmaxod_ydl168w_5_result,trial_on_rich_globalmaxod_ydl168w_5_result_1).
has_representation(trial_on_rich_globalmaxod_ydl168w_5_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_ydl168w_5_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ydl168w_5_result_1,trial_on_rich_globalmaxod_ydl168w_5_result_1_proc).
procedure(trial_on_rich_globalmaxod_ydl168w_5_result_1_proc).
has_representation(trial_on_rich_globalmaxod_ydl168w_5_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ydl168w_5_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_ydl168w_5_result,trial_on_rich_globalmaxod_ydl168w_5_result_2).
has_representation(trial_on_rich_globalmaxod_ydl168w_5_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_ydl168w_5_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ydl168w_5_result_2,trial_on_rich_globalmaxod_ydl168w_5_result_2_proc).
procedure(trial_on_rich_globalmaxod_ydl168w_5_result_2_proc).
has_representation(trial_on_rich_globalmaxod_ydl168w_5_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ydl168w_5_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_ydl168w_6,trial_on_rich_globalmaxod_ydl168w_6_design).
design(trial_on_rich_globalmaxod_ydl168w_6_design).
has_proposition(trial_on_rich_globalmaxod_ydl168w_6_design,trial_on_rich_globalmaxod_ydl168w_6_factor).
factor(trial_on_rich_globalmaxod_ydl168w_6_factor).
has_representation(trial_on_rich_globalmaxod_ydl168w_6_factor,'presence or absence of ydl168w').
has_input(trial_on_rich_globalmaxod_ydl168w_6,trial_on_rich_globalmaxod_ydl168w_6_data).
data(trial_on_rich_globalmaxod_ydl168w_6_data).
has_part(trial_on_rich_globalmaxod_ydl168w_6_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_ydl168w_6_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_ydl168w_6_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_ydl168w_6,'jan07-trial2_expt001-plate005').
plate('jan07-trial2_expt001-plate005').
has_proposition(trial_on_rich_globalmaxod_ydl168w_6,trial_on_rich_globalmaxod_ydl168w_6_result).
result(trial_on_rich_globalmaxod_ydl168w_6_result).
has_part(trial_on_rich_globalmaxod_ydl168w_6_result,trial_on_rich_globalmaxod_ydl168w_6_result_1).
has_representation(trial_on_rich_globalmaxod_ydl168w_6_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_ydl168w_6_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ydl168w_6_result_1,trial_on_rich_globalmaxod_ydl168w_6_result_1_proc).
procedure(trial_on_rich_globalmaxod_ydl168w_6_result_1_proc).
has_representation(trial_on_rich_globalmaxod_ydl168w_6_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ydl168w_6_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_ydl168w_6_result,trial_on_rich_globalmaxod_ydl168w_6_result_2).
has_representation(trial_on_rich_globalmaxod_ydl168w_6_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_ydl168w_6_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ydl168w_6_result_2,trial_on_rich_globalmaxod_ydl168w_6_result_2_proc).
procedure(trial_on_rich_globalmaxod_ydl168w_6_result_2_proc).
has_representation(trial_on_rich_globalmaxod_ydl168w_6_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ydl168w_6_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_ydl168w,trial_on_rich_globalmaxod_ydl168w_results).
result(trial_on_rich_globalmaxod_ydl168w_results).
has_part(trial_on_rich_globalmaxod_ydl168w_results,trial_on_rich_globalmaxod_ydl168w_results_1).
has_representation(trial_on_rich_globalmaxod_ydl168w_results_1,'median of knockout medians missing ydl168w').
text_representation('median of knockout medians missing ydl168w').
has_proposition(trial_on_rich_globalmaxod_ydl168w_results_1,trial_on_rich_globalmaxod_ydl168w_results_1_proc).
procedure(trial_on_rich_globalmaxod_ydl168w_results_1_proc).
has_proposition(trial_on_rich_globalmaxod_ydl168w_results_1_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_rich_globalmaxod_ydl168w_results,trial_on_rich_globalmaxod_ydl168w_results_2).
has_representation(trial_on_rich_globalmaxod_ydl168w_results_2,'median of wild type medians').
text_representation('median of wild type medians').
has_proposition(trial_on_rich_globalmaxod_ydl168w_results_2,trial_on_rich_globalmaxod_ydl168w_results_2_proc).
procedure(trial_on_rich_globalmaxod_ydl168w_results_2_proc).
has_proposition(trial_on_rich_globalmaxod_ydl168w_results_2_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_rich_globalmaxod_ydl168w_results,trial_on_rich_globalmaxod_ydl168w_results_3).
has_representation(trial_on_rich_globalmaxod_ydl168w_results_3,'difference between trial_on_rich_globalmaxod_ydl168w_results_1 and trial_on_rich_globalmaxod_ydl168w_results_2').
text_representation('difference between trial_on_rich_globalmaxod_ydl168w_results_1 and trial_on_rich_globalmaxod_ydl168w_results_2').
has_proposition(study_on_rich_globalmaxod,study_on_rich_globalmaxod_result).
result(study_on_rich_globalmaxod_result).
has_part(study_on_rich_globalmaxod_result,study_on_rich_globalmaxod_result_1).
has_representation(study_on_rich_globalmaxod_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_rich_globalmaxod_result_1,'results/wr_kr_global_max_od.csv').
link('results/wr_kr_global_max_od.csv').
has_proposition(study_on_rich_globalmaxod_result_1,study_on_rich_globalmaxod_result_1_proc).
procedure(study_on_rich_globalmaxod_result_1_proc).
has_proposition(study_on_rich_globalmaxod_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_rich_globalmaxod_result,study_on_rich_globalmaxod_result_2).
has_representation(study_on_rich_globalmaxod_result_2,'bar graph (histogram) plotting study_on_rich_globalmaxod_result_1').
text_representation('bar graph (histogram) plotting study_on_rich_globalmaxod_result_1').
has_proposition(study_on_rich_globalmaxod_result_2,'results/overlayed_global_max_od0.8.tiff').
link('results/overlayed_global_max_od0.8.tiff').
has_proposition(study_on_rich_globalmaxod_result_2,study_on_rich_globalmaxod_result_2_proc).
procedure(study_on_rich_globalmaxod_result_2_proc).
has_proposition(study_on_rich_globalmaxod_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_rich_globalmaxod,study_on_rich_globalmaxod_conclusion).
conclusion(study_on_rich_globalmaxod_conclusion).
has_representation(study_on_rich_globalmaxod_conclusion,'The knockouts reach a lower global_max_od in rich than the wild type').
text_representation('The knockouts reach a lower global_max_od in rich than the wild type').
has_proposition(study_on_rich_globalmaxod_conclusion,'obtain statistical mode of study_on_rich_globalmaxod_result_1').
procedure('obtain statistical mode of study_on_rich_globalmaxod_result_1').
text_representation('obtain statistical mode of study_on_rich_globalmaxod_result_1').
has_part(study_on_rich_globalmaxod,trial_on_rich_globalmaxod_ylr209c).
trial(trial_on_rich_globalmaxod_ylr209c).
has_agent(trial_on_rich_globalmaxod_ylr209c,ylr209c).
strain(ylr209c).
has_proposition(trial_on_rich_globalmaxod_ylr209c_1,trial_on_rich_globalmaxod_ylr209c_1_design).
design(trial_on_rich_globalmaxod_ylr209c_1_design).
has_proposition(trial_on_rich_globalmaxod_ylr209c_1_design,trial_on_rich_globalmaxod_ylr209c_1_factor).
factor(trial_on_rich_globalmaxod_ylr209c_1_factor).
has_representation(trial_on_rich_globalmaxod_ylr209c_1_factor,'presence or absence of ylr209c').
has_input(trial_on_rich_globalmaxod_ylr209c_1,trial_on_rich_globalmaxod_ylr209c_1_data).
data(trial_on_rich_globalmaxod_ylr209c_1_data).
has_part(trial_on_rich_globalmaxod_ylr209c_1_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_ylr209c_1_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_ylr209c_1_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_ylr209c_1,'mar07-trial3_expt001-plate003').
plate('mar07-trial3_expt001-plate003').
has_proposition(trial_on_rich_globalmaxod_ylr209c_1,trial_on_rich_globalmaxod_ylr209c_1_result).
result(trial_on_rich_globalmaxod_ylr209c_1_result).
has_part(trial_on_rich_globalmaxod_ylr209c_1_result,trial_on_rich_globalmaxod_ylr209c_1_result_1).
has_representation(trial_on_rich_globalmaxod_ylr209c_1_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_ylr209c_1_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ylr209c_1_result_1,trial_on_rich_globalmaxod_ylr209c_1_result_1_proc).
procedure(trial_on_rich_globalmaxod_ylr209c_1_result_1_proc).
has_representation(trial_on_rich_globalmaxod_ylr209c_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ylr209c_1_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_ylr209c_1_result,trial_on_rich_globalmaxod_ylr209c_1_result_2).
has_representation(trial_on_rich_globalmaxod_ylr209c_1_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_ylr209c_1_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ylr209c_1_result_2,trial_on_rich_globalmaxod_ylr209c_1_result_2_proc).
procedure(trial_on_rich_globalmaxod_ylr209c_1_result_2_proc).
has_representation(trial_on_rich_globalmaxod_ylr209c_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ylr209c_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_ylr209c_2,trial_on_rich_globalmaxod_ylr209c_2_design).
design(trial_on_rich_globalmaxod_ylr209c_2_design).
has_proposition(trial_on_rich_globalmaxod_ylr209c_2_design,trial_on_rich_globalmaxod_ylr209c_2_factor).
factor(trial_on_rich_globalmaxod_ylr209c_2_factor).
has_representation(trial_on_rich_globalmaxod_ylr209c_2_factor,'presence or absence of ylr209c').
has_input(trial_on_rich_globalmaxod_ylr209c_2,trial_on_rich_globalmaxod_ylr209c_2_data).
data(trial_on_rich_globalmaxod_ylr209c_2_data).
has_part(trial_on_rich_globalmaxod_ylr209c_2_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_ylr209c_2_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_ylr209c_2_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_ylr209c_2,'mar07-trial3_expt001-plate004').
plate('mar07-trial3_expt001-plate004').
has_proposition(trial_on_rich_globalmaxod_ylr209c_2,trial_on_rich_globalmaxod_ylr209c_2_result).
result(trial_on_rich_globalmaxod_ylr209c_2_result).
has_part(trial_on_rich_globalmaxod_ylr209c_2_result,trial_on_rich_globalmaxod_ylr209c_2_result_1).
has_representation(trial_on_rich_globalmaxod_ylr209c_2_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_ylr209c_2_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ylr209c_2_result_1,trial_on_rich_globalmaxod_ylr209c_2_result_1_proc).
procedure(trial_on_rich_globalmaxod_ylr209c_2_result_1_proc).
has_representation(trial_on_rich_globalmaxod_ylr209c_2_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ylr209c_2_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_ylr209c_2_result,trial_on_rich_globalmaxod_ylr209c_2_result_2).
has_representation(trial_on_rich_globalmaxod_ylr209c_2_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_ylr209c_2_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ylr209c_2_result_2,trial_on_rich_globalmaxod_ylr209c_2_result_2_proc).
procedure(trial_on_rich_globalmaxod_ylr209c_2_result_2_proc).
has_representation(trial_on_rich_globalmaxod_ylr209c_2_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ylr209c_2_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_ylr209c_3,trial_on_rich_globalmaxod_ylr209c_3_design).
design(trial_on_rich_globalmaxod_ylr209c_3_design).
has_proposition(trial_on_rich_globalmaxod_ylr209c_3_design,trial_on_rich_globalmaxod_ylr209c_3_factor).
factor(trial_on_rich_globalmaxod_ylr209c_3_factor).
has_representation(trial_on_rich_globalmaxod_ylr209c_3_factor,'presence or absence of ylr209c').
has_input(trial_on_rich_globalmaxod_ylr209c_3,trial_on_rich_globalmaxod_ylr209c_3_data).
data(trial_on_rich_globalmaxod_ylr209c_3_data).
has_part(trial_on_rich_globalmaxod_ylr209c_3_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_ylr209c_3_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_ylr209c_3_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_ylr209c_3,'mar07-trial4_expt1-plate004').
plate('mar07-trial4_expt1-plate004').
has_proposition(trial_on_rich_globalmaxod_ylr209c_3,trial_on_rich_globalmaxod_ylr209c_3_result).
result(trial_on_rich_globalmaxod_ylr209c_3_result).
has_part(trial_on_rich_globalmaxod_ylr209c_3_result,trial_on_rich_globalmaxod_ylr209c_3_result_1).
has_representation(trial_on_rich_globalmaxod_ylr209c_3_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_ylr209c_3_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ylr209c_3_result_1,trial_on_rich_globalmaxod_ylr209c_3_result_1_proc).
procedure(trial_on_rich_globalmaxod_ylr209c_3_result_1_proc).
has_representation(trial_on_rich_globalmaxod_ylr209c_3_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ylr209c_3_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_ylr209c_3_result,trial_on_rich_globalmaxod_ylr209c_3_result_2).
has_representation(trial_on_rich_globalmaxod_ylr209c_3_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
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link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ylr209c_3_result_2,trial_on_rich_globalmaxod_ylr209c_3_result_2_proc).
procedure(trial_on_rich_globalmaxod_ylr209c_3_result_2_proc).
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text_representation('procedure for obtaining median').
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link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_ylr209c_4,trial_on_rich_globalmaxod_ylr209c_4_design).
design(trial_on_rich_globalmaxod_ylr209c_4_design).
has_proposition(trial_on_rich_globalmaxod_ylr209c_4_design,trial_on_rich_globalmaxod_ylr209c_4_factor).
factor(trial_on_rich_globalmaxod_ylr209c_4_factor).
has_representation(trial_on_rich_globalmaxod_ylr209c_4_factor,'presence or absence of ylr209c').
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data(trial_on_rich_globalmaxod_ylr209c_4_data).
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has_proposition(trial_on_rich_globalmaxod_ylr209c_4_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_ylr209c_4,'mar07-trial4_expt1-plate005').
plate('mar07-trial4_expt1-plate005').
has_proposition(trial_on_rich_globalmaxod_ylr209c_4,trial_on_rich_globalmaxod_ylr209c_4_result).
result(trial_on_rich_globalmaxod_ylr209c_4_result).
has_part(trial_on_rich_globalmaxod_ylr209c_4_result,trial_on_rich_globalmaxod_ylr209c_4_result_1).
has_representation(trial_on_rich_globalmaxod_ylr209c_4_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
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link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ylr209c_4_result_1,trial_on_rich_globalmaxod_ylr209c_4_result_1_proc).
procedure(trial_on_rich_globalmaxod_ylr209c_4_result_1_proc).
has_representation(trial_on_rich_globalmaxod_ylr209c_4_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
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link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_ylr209c_4_result,trial_on_rich_globalmaxod_ylr209c_4_result_2).
has_representation(trial_on_rich_globalmaxod_ylr209c_4_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_ylr209c_4_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ylr209c_4_result_2,trial_on_rich_globalmaxod_ylr209c_4_result_2_proc).
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has_representation(trial_on_rich_globalmaxod_ylr209c_4_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ylr209c_4_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_ylr209c_5,trial_on_rich_globalmaxod_ylr209c_5_design).
design(trial_on_rich_globalmaxod_ylr209c_5_design).
has_proposition(trial_on_rich_globalmaxod_ylr209c_5_design,trial_on_rich_globalmaxod_ylr209c_5_factor).
factor(trial_on_rich_globalmaxod_ylr209c_5_factor).
has_representation(trial_on_rich_globalmaxod_ylr209c_5_factor,'presence or absence of ylr209c').
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data(trial_on_rich_globalmaxod_ylr209c_5_data).
has_part(trial_on_rich_globalmaxod_ylr209c_5_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_ylr209c_5_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_ylr209c_5_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_ylr209c_5,'mar07-trial4_expt1-plate006').
plate('mar07-trial4_expt1-plate006').
has_proposition(trial_on_rich_globalmaxod_ylr209c_5,trial_on_rich_globalmaxod_ylr209c_5_result).
result(trial_on_rich_globalmaxod_ylr209c_5_result).
has_part(trial_on_rich_globalmaxod_ylr209c_5_result,trial_on_rich_globalmaxod_ylr209c_5_result_1).
has_representation(trial_on_rich_globalmaxod_ylr209c_5_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_ylr209c_5_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ylr209c_5_result_1,trial_on_rich_globalmaxod_ylr209c_5_result_1_proc).
procedure(trial_on_rich_globalmaxod_ylr209c_5_result_1_proc).
has_representation(trial_on_rich_globalmaxod_ylr209c_5_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ylr209c_5_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_ylr209c_5_result,trial_on_rich_globalmaxod_ylr209c_5_result_2).
has_representation(trial_on_rich_globalmaxod_ylr209c_5_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_ylr209c_5_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ylr209c_5_result_2,trial_on_rich_globalmaxod_ylr209c_5_result_2_proc).
procedure(trial_on_rich_globalmaxod_ylr209c_5_result_2_proc).
has_representation(trial_on_rich_globalmaxod_ylr209c_5_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
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link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_ylr209c_6,trial_on_rich_globalmaxod_ylr209c_6_design).
design(trial_on_rich_globalmaxod_ylr209c_6_design).
has_proposition(trial_on_rich_globalmaxod_ylr209c_6_design,trial_on_rich_globalmaxod_ylr209c_6_factor).
factor(trial_on_rich_globalmaxod_ylr209c_6_factor).
has_representation(trial_on_rich_globalmaxod_ylr209c_6_factor,'presence or absence of ylr209c').
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data(trial_on_rich_globalmaxod_ylr209c_6_data).
has_part(trial_on_rich_globalmaxod_ylr209c_6_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_ylr209c_6_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_ylr209c_6_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_ylr209c_6,'mar07-trial6_expt001-plate001').
plate('mar07-trial6_expt001-plate001').
has_proposition(trial_on_rich_globalmaxod_ylr209c_6,trial_on_rich_globalmaxod_ylr209c_6_result).
result(trial_on_rich_globalmaxod_ylr209c_6_result).
has_part(trial_on_rich_globalmaxod_ylr209c_6_result,trial_on_rich_globalmaxod_ylr209c_6_result_1).
has_representation(trial_on_rich_globalmaxod_ylr209c_6_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_ylr209c_6_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ylr209c_6_result_1,trial_on_rich_globalmaxod_ylr209c_6_result_1_proc).
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has_representation(trial_on_rich_globalmaxod_ylr209c_6_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
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link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_ylr209c_6_result,trial_on_rich_globalmaxod_ylr209c_6_result_2).
has_representation(trial_on_rich_globalmaxod_ylr209c_6_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_ylr209c_6_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ylr209c_6_result_2,trial_on_rich_globalmaxod_ylr209c_6_result_2_proc).
procedure(trial_on_rich_globalmaxod_ylr209c_6_result_2_proc).
has_representation(trial_on_rich_globalmaxod_ylr209c_6_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ylr209c_6_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_ylr209c_7,trial_on_rich_globalmaxod_ylr209c_7_design).
design(trial_on_rich_globalmaxod_ylr209c_7_design).
has_proposition(trial_on_rich_globalmaxod_ylr209c_7_design,trial_on_rich_globalmaxod_ylr209c_7_factor).
factor(trial_on_rich_globalmaxod_ylr209c_7_factor).
has_representation(trial_on_rich_globalmaxod_ylr209c_7_factor,'presence or absence of ylr209c').
has_input(trial_on_rich_globalmaxod_ylr209c_7,trial_on_rich_globalmaxod_ylr209c_7_data).
data(trial_on_rich_globalmaxod_ylr209c_7_data).
has_part(trial_on_rich_globalmaxod_ylr209c_7_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_ylr209c_7_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_ylr209c_7_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_ylr209c_7,'mar07-trial6_expt001-plate002').
plate('mar07-trial6_expt001-plate002').
has_proposition(trial_on_rich_globalmaxod_ylr209c_7,trial_on_rich_globalmaxod_ylr209c_7_result).
result(trial_on_rich_globalmaxod_ylr209c_7_result).
has_part(trial_on_rich_globalmaxod_ylr209c_7_result,trial_on_rich_globalmaxod_ylr209c_7_result_1).
has_representation(trial_on_rich_globalmaxod_ylr209c_7_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_ylr209c_7_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ylr209c_7_result_1,trial_on_rich_globalmaxod_ylr209c_7_result_1_proc).
procedure(trial_on_rich_globalmaxod_ylr209c_7_result_1_proc).
has_representation(trial_on_rich_globalmaxod_ylr209c_7_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ylr209c_7_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_ylr209c_7_result,trial_on_rich_globalmaxod_ylr209c_7_result_2).
has_representation(trial_on_rich_globalmaxod_ylr209c_7_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_ylr209c_7_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ylr209c_7_result_2,trial_on_rich_globalmaxod_ylr209c_7_result_2_proc).
procedure(trial_on_rich_globalmaxod_ylr209c_7_result_2_proc).
has_representation(trial_on_rich_globalmaxod_ylr209c_7_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ylr209c_7_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_ylr209c_8,trial_on_rich_globalmaxod_ylr209c_8_design).
design(trial_on_rich_globalmaxod_ylr209c_8_design).
has_proposition(trial_on_rich_globalmaxod_ylr209c_8_design,trial_on_rich_globalmaxod_ylr209c_8_factor).
factor(trial_on_rich_globalmaxod_ylr209c_8_factor).
has_representation(trial_on_rich_globalmaxod_ylr209c_8_factor,'presence or absence of ylr209c').
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data(trial_on_rich_globalmaxod_ylr209c_8_data).
has_part(trial_on_rich_globalmaxod_ylr209c_8_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_ylr209c_8_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_ylr209c_8_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_ylr209c_8,'mar07-trial6_expt001-plate004').
plate('mar07-trial6_expt001-plate004').
has_proposition(trial_on_rich_globalmaxod_ylr209c_8,trial_on_rich_globalmaxod_ylr209c_8_result).
result(trial_on_rich_globalmaxod_ylr209c_8_result).
has_part(trial_on_rich_globalmaxod_ylr209c_8_result,trial_on_rich_globalmaxod_ylr209c_8_result_1).
has_representation(trial_on_rich_globalmaxod_ylr209c_8_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_ylr209c_8_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ylr209c_8_result_1,trial_on_rich_globalmaxod_ylr209c_8_result_1_proc).
procedure(trial_on_rich_globalmaxod_ylr209c_8_result_1_proc).
has_representation(trial_on_rich_globalmaxod_ylr209c_8_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ylr209c_8_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_ylr209c_8_result,trial_on_rich_globalmaxod_ylr209c_8_result_2).
has_representation(trial_on_rich_globalmaxod_ylr209c_8_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_ylr209c_8_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ylr209c_8_result_2,trial_on_rich_globalmaxod_ylr209c_8_result_2_proc).
procedure(trial_on_rich_globalmaxod_ylr209c_8_result_2_proc).
has_representation(trial_on_rich_globalmaxod_ylr209c_8_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ylr209c_8_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_ylr209c_9,trial_on_rich_globalmaxod_ylr209c_9_design).
design(trial_on_rich_globalmaxod_ylr209c_9_design).
has_proposition(trial_on_rich_globalmaxod_ylr209c_9_design,trial_on_rich_globalmaxod_ylr209c_9_factor).
factor(trial_on_rich_globalmaxod_ylr209c_9_factor).
has_representation(trial_on_rich_globalmaxod_ylr209c_9_factor,'presence or absence of ylr209c').
has_input(trial_on_rich_globalmaxod_ylr209c_9,trial_on_rich_globalmaxod_ylr209c_9_data).
data(trial_on_rich_globalmaxod_ylr209c_9_data).
has_part(trial_on_rich_globalmaxod_ylr209c_9_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_ylr209c_9_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_ylr209c_9_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_ylr209c_9,'mar07-trial6_expt001-plate006').
plate('mar07-trial6_expt001-plate006').
has_proposition(trial_on_rich_globalmaxod_ylr209c_9,trial_on_rich_globalmaxod_ylr209c_9_result).
result(trial_on_rich_globalmaxod_ylr209c_9_result).
has_part(trial_on_rich_globalmaxod_ylr209c_9_result,trial_on_rich_globalmaxod_ylr209c_9_result_1).
has_representation(trial_on_rich_globalmaxod_ylr209c_9_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_ylr209c_9_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ylr209c_9_result_1,trial_on_rich_globalmaxod_ylr209c_9_result_1_proc).
procedure(trial_on_rich_globalmaxod_ylr209c_9_result_1_proc).
has_representation(trial_on_rich_globalmaxod_ylr209c_9_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ylr209c_9_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_ylr209c_9_result,trial_on_rich_globalmaxod_ylr209c_9_result_2).
has_representation(trial_on_rich_globalmaxod_ylr209c_9_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_ylr209c_9_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ylr209c_9_result_2,trial_on_rich_globalmaxod_ylr209c_9_result_2_proc).
procedure(trial_on_rich_globalmaxod_ylr209c_9_result_2_proc).
has_representation(trial_on_rich_globalmaxod_ylr209c_9_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ylr209c_9_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_ylr209c_10,trial_on_rich_globalmaxod_ylr209c_10_design).
design(trial_on_rich_globalmaxod_ylr209c_10_design).
has_proposition(trial_on_rich_globalmaxod_ylr209c_10_design,trial_on_rich_globalmaxod_ylr209c_10_factor).
factor(trial_on_rich_globalmaxod_ylr209c_10_factor).
has_representation(trial_on_rich_globalmaxod_ylr209c_10_factor,'presence or absence of ylr209c').
has_input(trial_on_rich_globalmaxod_ylr209c_10,trial_on_rich_globalmaxod_ylr209c_10_data).
data(trial_on_rich_globalmaxod_ylr209c_10_data).
has_part(trial_on_rich_globalmaxod_ylr209c_10_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_ylr209c_10_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_ylr209c_10_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_ylr209c_10,'mar07-trial6_expt001-plate007').
plate('mar07-trial6_expt001-plate007').
has_proposition(trial_on_rich_globalmaxod_ylr209c_10,trial_on_rich_globalmaxod_ylr209c_10_result).
result(trial_on_rich_globalmaxod_ylr209c_10_result).
has_part(trial_on_rich_globalmaxod_ylr209c_10_result,trial_on_rich_globalmaxod_ylr209c_10_result_1).
has_representation(trial_on_rich_globalmaxod_ylr209c_10_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_ylr209c_10_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ylr209c_10_result_1,trial_on_rich_globalmaxod_ylr209c_10_result_1_proc).
procedure(trial_on_rich_globalmaxod_ylr209c_10_result_1_proc).
has_representation(trial_on_rich_globalmaxod_ylr209c_10_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ylr209c_10_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_ylr209c_10_result,trial_on_rich_globalmaxod_ylr209c_10_result_2).
has_representation(trial_on_rich_globalmaxod_ylr209c_10_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_ylr209c_10_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ylr209c_10_result_2,trial_on_rich_globalmaxod_ylr209c_10_result_2_proc).
procedure(trial_on_rich_globalmaxod_ylr209c_10_result_2_proc).
has_representation(trial_on_rich_globalmaxod_ylr209c_10_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ylr209c_10_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_ylr209c_11,trial_on_rich_globalmaxod_ylr209c_11_design).
design(trial_on_rich_globalmaxod_ylr209c_11_design).
has_proposition(trial_on_rich_globalmaxod_ylr209c_11_design,trial_on_rich_globalmaxod_ylr209c_11_factor).
factor(trial_on_rich_globalmaxod_ylr209c_11_factor).
has_representation(trial_on_rich_globalmaxod_ylr209c_11_factor,'presence or absence of ylr209c').
has_input(trial_on_rich_globalmaxod_ylr209c_11,trial_on_rich_globalmaxod_ylr209c_11_data).
data(trial_on_rich_globalmaxod_ylr209c_11_data).
has_part(trial_on_rich_globalmaxod_ylr209c_11_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_ylr209c_11_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_ylr209c_11_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_ylr209c_11,'mar07-trial6_expt001-plate008').
plate('mar07-trial6_expt001-plate008').
has_proposition(trial_on_rich_globalmaxod_ylr209c_11,trial_on_rich_globalmaxod_ylr209c_11_result).
result(trial_on_rich_globalmaxod_ylr209c_11_result).
has_part(trial_on_rich_globalmaxod_ylr209c_11_result,trial_on_rich_globalmaxod_ylr209c_11_result_1).
has_representation(trial_on_rich_globalmaxod_ylr209c_11_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_ylr209c_11_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ylr209c_11_result_1,trial_on_rich_globalmaxod_ylr209c_11_result_1_proc).
procedure(trial_on_rich_globalmaxod_ylr209c_11_result_1_proc).
has_representation(trial_on_rich_globalmaxod_ylr209c_11_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ylr209c_11_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_ylr209c_11_result,trial_on_rich_globalmaxod_ylr209c_11_result_2).
has_representation(trial_on_rich_globalmaxod_ylr209c_11_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_ylr209c_11_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ylr209c_11_result_2,trial_on_rich_globalmaxod_ylr209c_11_result_2_proc).
procedure(trial_on_rich_globalmaxod_ylr209c_11_result_2_proc).
has_representation(trial_on_rich_globalmaxod_ylr209c_11_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ylr209c_11_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_ylr209c_12,trial_on_rich_globalmaxod_ylr209c_12_design).
design(trial_on_rich_globalmaxod_ylr209c_12_design).
has_proposition(trial_on_rich_globalmaxod_ylr209c_12_design,trial_on_rich_globalmaxod_ylr209c_12_factor).
factor(trial_on_rich_globalmaxod_ylr209c_12_factor).
has_representation(trial_on_rich_globalmaxod_ylr209c_12_factor,'presence or absence of ylr209c').
has_input(trial_on_rich_globalmaxod_ylr209c_12,trial_on_rich_globalmaxod_ylr209c_12_data).
data(trial_on_rich_globalmaxod_ylr209c_12_data).
has_part(trial_on_rich_globalmaxod_ylr209c_12_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_ylr209c_12_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_ylr209c_12_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_ylr209c_12,'mar07-trial9_expt001-plate005').
plate('mar07-trial9_expt001-plate005').
has_proposition(trial_on_rich_globalmaxod_ylr209c_12,trial_on_rich_globalmaxod_ylr209c_12_result).
result(trial_on_rich_globalmaxod_ylr209c_12_result).
has_part(trial_on_rich_globalmaxod_ylr209c_12_result,trial_on_rich_globalmaxod_ylr209c_12_result_1).
has_representation(trial_on_rich_globalmaxod_ylr209c_12_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_ylr209c_12_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ylr209c_12_result_1,trial_on_rich_globalmaxod_ylr209c_12_result_1_proc).
procedure(trial_on_rich_globalmaxod_ylr209c_12_result_1_proc).
has_representation(trial_on_rich_globalmaxod_ylr209c_12_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ylr209c_12_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_ylr209c_12_result,trial_on_rich_globalmaxod_ylr209c_12_result_2).
has_representation(trial_on_rich_globalmaxod_ylr209c_12_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_ylr209c_12_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ylr209c_12_result_2,trial_on_rich_globalmaxod_ylr209c_12_result_2_proc).
procedure(trial_on_rich_globalmaxod_ylr209c_12_result_2_proc).
has_representation(trial_on_rich_globalmaxod_ylr209c_12_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ylr209c_12_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_ylr209c,trial_on_rich_globalmaxod_ylr209c_results).
result(trial_on_rich_globalmaxod_ylr209c_results).
has_part(trial_on_rich_globalmaxod_ylr209c_results,trial_on_rich_globalmaxod_ylr209c_results_1).
has_representation(trial_on_rich_globalmaxod_ylr209c_results_1,'median of knockout medians missing ylr209c').
text_representation('median of knockout medians missing ylr209c').
has_proposition(trial_on_rich_globalmaxod_ylr209c_results_1,trial_on_rich_globalmaxod_ylr209c_results_1_proc).
procedure(trial_on_rich_globalmaxod_ylr209c_results_1_proc).
has_proposition(trial_on_rich_globalmaxod_ylr209c_results_1_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_rich_globalmaxod_ylr209c_results,trial_on_rich_globalmaxod_ylr209c_results_2).
has_representation(trial_on_rich_globalmaxod_ylr209c_results_2,'median of wild type medians').
text_representation('median of wild type medians').
has_proposition(trial_on_rich_globalmaxod_ylr209c_results_2,trial_on_rich_globalmaxod_ylr209c_results_2_proc).
procedure(trial_on_rich_globalmaxod_ylr209c_results_2_proc).
has_proposition(trial_on_rich_globalmaxod_ylr209c_results_2_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_rich_globalmaxod_ylr209c_results,trial_on_rich_globalmaxod_ylr209c_results_3).
has_representation(trial_on_rich_globalmaxod_ylr209c_results_3,'difference between trial_on_rich_globalmaxod_ylr209c_results_1 and trial_on_rich_globalmaxod_ylr209c_results_2').
text_representation('difference between trial_on_rich_globalmaxod_ylr209c_results_1 and trial_on_rich_globalmaxod_ylr209c_results_2').
has_proposition(study_on_rich_globalmaxod,study_on_rich_globalmaxod_result).
result(study_on_rich_globalmaxod_result).
has_part(study_on_rich_globalmaxod_result,study_on_rich_globalmaxod_result_1).
has_representation(study_on_rich_globalmaxod_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_rich_globalmaxod_result_1,'results/wr_kr_global_max_od.csv').
link('results/wr_kr_global_max_od.csv').
has_proposition(study_on_rich_globalmaxod_result_1,study_on_rich_globalmaxod_result_1_proc).
procedure(study_on_rich_globalmaxod_result_1_proc).
has_proposition(study_on_rich_globalmaxod_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_rich_globalmaxod_result,study_on_rich_globalmaxod_result_2).
has_representation(study_on_rich_globalmaxod_result_2,'bar graph (histogram) plotting study_on_rich_globalmaxod_result_1').
text_representation('bar graph (histogram) plotting study_on_rich_globalmaxod_result_1').
has_proposition(study_on_rich_globalmaxod_result_2,'results/overlayed_global_max_od0.8.tiff').
link('results/overlayed_global_max_od0.8.tiff').
has_proposition(study_on_rich_globalmaxod_result_2,study_on_rich_globalmaxod_result_2_proc).
procedure(study_on_rich_globalmaxod_result_2_proc).
has_proposition(study_on_rich_globalmaxod_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_rich_globalmaxod,study_on_rich_globalmaxod_conclusion).
conclusion(study_on_rich_globalmaxod_conclusion).
has_representation(study_on_rich_globalmaxod_conclusion,'The knockouts reach a lower global_max_od in rich than the wild type').
text_representation('The knockouts reach a lower global_max_od in rich than the wild type').
has_proposition(study_on_rich_globalmaxod_conclusion,'obtain statistical mode of study_on_rich_globalmaxod_result_1').
procedure('obtain statistical mode of study_on_rich_globalmaxod_result_1').
text_representation('obtain statistical mode of study_on_rich_globalmaxod_result_1').
has_part(study_on_rich_globalmaxod,trial_on_rich_globalmaxod_yjl060w).
trial(trial_on_rich_globalmaxod_yjl060w).
has_agent(trial_on_rich_globalmaxod_yjl060w,yjl060w).
strain(yjl060w).
has_proposition(trial_on_rich_globalmaxod_yjl060w_1,trial_on_rich_globalmaxod_yjl060w_1_design).
design(trial_on_rich_globalmaxod_yjl060w_1_design).
has_proposition(trial_on_rich_globalmaxod_yjl060w_1_design,trial_on_rich_globalmaxod_yjl060w_1_factor).
factor(trial_on_rich_globalmaxod_yjl060w_1_factor).
has_representation(trial_on_rich_globalmaxod_yjl060w_1_factor,'presence or absence of yjl060w').
has_input(trial_on_rich_globalmaxod_yjl060w_1,trial_on_rich_globalmaxod_yjl060w_1_data).
data(trial_on_rich_globalmaxod_yjl060w_1_data).
has_part(trial_on_rich_globalmaxod_yjl060w_1_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_yjl060w_1_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_yjl060w_1_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_yjl060w_1,'jan07-lyss1_expt001-plate004').
plate('jan07-lyss1_expt001-plate004').
has_proposition(trial_on_rich_globalmaxod_yjl060w_1,trial_on_rich_globalmaxod_yjl060w_1_result).
result(trial_on_rich_globalmaxod_yjl060w_1_result).
has_part(trial_on_rich_globalmaxod_yjl060w_1_result,trial_on_rich_globalmaxod_yjl060w_1_result_1).
has_representation(trial_on_rich_globalmaxod_yjl060w_1_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_yjl060w_1_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_yjl060w_1_result_1,trial_on_rich_globalmaxod_yjl060w_1_result_1_proc).
procedure(trial_on_rich_globalmaxod_yjl060w_1_result_1_proc).
has_representation(trial_on_rich_globalmaxod_yjl060w_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_yjl060w_1_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_yjl060w_1_result,trial_on_rich_globalmaxod_yjl060w_1_result_2).
has_representation(trial_on_rich_globalmaxod_yjl060w_1_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_yjl060w_1_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_yjl060w_1_result_2,trial_on_rich_globalmaxod_yjl060w_1_result_2_proc).
procedure(trial_on_rich_globalmaxod_yjl060w_1_result_2_proc).
has_representation(trial_on_rich_globalmaxod_yjl060w_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_yjl060w_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_yjl060w_2,trial_on_rich_globalmaxod_yjl060w_2_design).
design(trial_on_rich_globalmaxod_yjl060w_2_design).
has_proposition(trial_on_rich_globalmaxod_yjl060w_2_design,trial_on_rich_globalmaxod_yjl060w_2_factor).
factor(trial_on_rich_globalmaxod_yjl060w_2_factor).
has_representation(trial_on_rich_globalmaxod_yjl060w_2_factor,'presence or absence of yjl060w').
has_input(trial_on_rich_globalmaxod_yjl060w_2,trial_on_rich_globalmaxod_yjl060w_2_data).
data(trial_on_rich_globalmaxod_yjl060w_2_data).
has_part(trial_on_rich_globalmaxod_yjl060w_2_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_yjl060w_2_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_yjl060w_2_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_yjl060w_2,'jan07-lyss1_expt001-plate005').
plate('jan07-lyss1_expt001-plate005').
has_proposition(trial_on_rich_globalmaxod_yjl060w_2,trial_on_rich_globalmaxod_yjl060w_2_result).
result(trial_on_rich_globalmaxod_yjl060w_2_result).
has_part(trial_on_rich_globalmaxod_yjl060w_2_result,trial_on_rich_globalmaxod_yjl060w_2_result_1).
has_representation(trial_on_rich_globalmaxod_yjl060w_2_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_yjl060w_2_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_yjl060w_2_result_1,trial_on_rich_globalmaxod_yjl060w_2_result_1_proc).
procedure(trial_on_rich_globalmaxod_yjl060w_2_result_1_proc).
has_representation(trial_on_rich_globalmaxod_yjl060w_2_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_yjl060w_2_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_yjl060w_2_result,trial_on_rich_globalmaxod_yjl060w_2_result_2).
has_representation(trial_on_rich_globalmaxod_yjl060w_2_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_yjl060w_2_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_yjl060w_2_result_2,trial_on_rich_globalmaxod_yjl060w_2_result_2_proc).
procedure(trial_on_rich_globalmaxod_yjl060w_2_result_2_proc).
has_representation(trial_on_rich_globalmaxod_yjl060w_2_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_yjl060w_2_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_yjl060w_3,trial_on_rich_globalmaxod_yjl060w_3_design).
design(trial_on_rich_globalmaxod_yjl060w_3_design).
has_proposition(trial_on_rich_globalmaxod_yjl060w_3_design,trial_on_rich_globalmaxod_yjl060w_3_factor).
factor(trial_on_rich_globalmaxod_yjl060w_3_factor).
has_representation(trial_on_rich_globalmaxod_yjl060w_3_factor,'presence or absence of yjl060w').
has_input(trial_on_rich_globalmaxod_yjl060w_3,trial_on_rich_globalmaxod_yjl060w_3_data).
data(trial_on_rich_globalmaxod_yjl060w_3_data).
has_part(trial_on_rich_globalmaxod_yjl060w_3_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_yjl060w_3_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_yjl060w_3_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_yjl060w_3,'jan07-lyss1_expt001-plate006').
plate('jan07-lyss1_expt001-plate006').
has_proposition(trial_on_rich_globalmaxod_yjl060w_3,trial_on_rich_globalmaxod_yjl060w_3_result).
result(trial_on_rich_globalmaxod_yjl060w_3_result).
has_part(trial_on_rich_globalmaxod_yjl060w_3_result,trial_on_rich_globalmaxod_yjl060w_3_result_1).
has_representation(trial_on_rich_globalmaxod_yjl060w_3_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_yjl060w_3_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_yjl060w_3_result_1,trial_on_rich_globalmaxod_yjl060w_3_result_1_proc).
procedure(trial_on_rich_globalmaxod_yjl060w_3_result_1_proc).
has_representation(trial_on_rich_globalmaxod_yjl060w_3_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_yjl060w_3_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_yjl060w_3_result,trial_on_rich_globalmaxod_yjl060w_3_result_2).
has_representation(trial_on_rich_globalmaxod_yjl060w_3_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_yjl060w_3_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_yjl060w_3_result_2,trial_on_rich_globalmaxod_yjl060w_3_result_2_proc).
procedure(trial_on_rich_globalmaxod_yjl060w_3_result_2_proc).
has_representation(trial_on_rich_globalmaxod_yjl060w_3_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_yjl060w_3_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_yjl060w,trial_on_rich_globalmaxod_yjl060w_results).
result(trial_on_rich_globalmaxod_yjl060w_results).
has_part(trial_on_rich_globalmaxod_yjl060w_results,trial_on_rich_globalmaxod_yjl060w_results_1).
has_representation(trial_on_rich_globalmaxod_yjl060w_results_1,'median of knockout medians missing yjl060w').
text_representation('median of knockout medians missing yjl060w').
has_proposition(trial_on_rich_globalmaxod_yjl060w_results_1,trial_on_rich_globalmaxod_yjl060w_results_1_proc).
procedure(trial_on_rich_globalmaxod_yjl060w_results_1_proc).
has_proposition(trial_on_rich_globalmaxod_yjl060w_results_1_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_rich_globalmaxod_yjl060w_results,trial_on_rich_globalmaxod_yjl060w_results_2).
has_representation(trial_on_rich_globalmaxod_yjl060w_results_2,'median of wild type medians').
text_representation('median of wild type medians').
has_proposition(trial_on_rich_globalmaxod_yjl060w_results_2,trial_on_rich_globalmaxod_yjl060w_results_2_proc).
procedure(trial_on_rich_globalmaxod_yjl060w_results_2_proc).
has_proposition(trial_on_rich_globalmaxod_yjl060w_results_2_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_rich_globalmaxod_yjl060w_results,trial_on_rich_globalmaxod_yjl060w_results_3).
has_representation(trial_on_rich_globalmaxod_yjl060w_results_3,'difference between trial_on_rich_globalmaxod_yjl060w_results_1 and trial_on_rich_globalmaxod_yjl060w_results_2').
text_representation('difference between trial_on_rich_globalmaxod_yjl060w_results_1 and trial_on_rich_globalmaxod_yjl060w_results_2').
has_proposition(study_on_rich_globalmaxod,study_on_rich_globalmaxod_result).
result(study_on_rich_globalmaxod_result).
has_part(study_on_rich_globalmaxod_result,study_on_rich_globalmaxod_result_1).
has_representation(study_on_rich_globalmaxod_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_rich_globalmaxod_result_1,'results/wr_kr_global_max_od.csv').
link('results/wr_kr_global_max_od.csv').
has_proposition(study_on_rich_globalmaxod_result_1,study_on_rich_globalmaxod_result_1_proc).
procedure(study_on_rich_globalmaxod_result_1_proc).
has_proposition(study_on_rich_globalmaxod_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_rich_globalmaxod_result,study_on_rich_globalmaxod_result_2).
has_representation(study_on_rich_globalmaxod_result_2,'bar graph (histogram) plotting study_on_rich_globalmaxod_result_1').
text_representation('bar graph (histogram) plotting study_on_rich_globalmaxod_result_1').
has_proposition(study_on_rich_globalmaxod_result_2,'results/overlayed_global_max_od0.8.tiff').
link('results/overlayed_global_max_od0.8.tiff').
has_proposition(study_on_rich_globalmaxod_result_2,study_on_rich_globalmaxod_result_2_proc).
procedure(study_on_rich_globalmaxod_result_2_proc).
has_proposition(study_on_rich_globalmaxod_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_rich_globalmaxod,study_on_rich_globalmaxod_conclusion).
conclusion(study_on_rich_globalmaxod_conclusion).
has_representation(study_on_rich_globalmaxod_conclusion,'The knockouts reach a lower global_max_od in rich than the wild type').
text_representation('The knockouts reach a lower global_max_od in rich than the wild type').
has_proposition(study_on_rich_globalmaxod_conclusion,'obtain statistical mode of study_on_rich_globalmaxod_result_1').
procedure('obtain statistical mode of study_on_rich_globalmaxod_result_1').
text_representation('obtain statistical mode of study_on_rich_globalmaxod_result_1').
has_part(study_on_rich_globalmaxod,trial_on_rich_globalmaxod_yll060c).
trial(trial_on_rich_globalmaxod_yll060c).
has_agent(trial_on_rich_globalmaxod_yll060c,yll060c).
strain(yll060c).
has_proposition(trial_on_rich_globalmaxod_yll060c_1,trial_on_rich_globalmaxod_yll060c_1_design).
design(trial_on_rich_globalmaxod_yll060c_1_design).
has_proposition(trial_on_rich_globalmaxod_yll060c_1_design,trial_on_rich_globalmaxod_yll060c_1_factor).
factor(trial_on_rich_globalmaxod_yll060c_1_factor).
has_representation(trial_on_rich_globalmaxod_yll060c_1_factor,'presence or absence of yll060c').
has_input(trial_on_rich_globalmaxod_yll060c_1,trial_on_rich_globalmaxod_yll060c_1_data).
data(trial_on_rich_globalmaxod_yll060c_1_data).
has_part(trial_on_rich_globalmaxod_yll060c_1_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_yll060c_1_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_yll060c_1_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_yll060c_1,'mar07-trial4_expt1-plate001').
plate('mar07-trial4_expt1-plate001').
has_proposition(trial_on_rich_globalmaxod_yll060c_1,trial_on_rich_globalmaxod_yll060c_1_result).
result(trial_on_rich_globalmaxod_yll060c_1_result).
has_part(trial_on_rich_globalmaxod_yll060c_1_result,trial_on_rich_globalmaxod_yll060c_1_result_1).
has_representation(trial_on_rich_globalmaxod_yll060c_1_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_yll060c_1_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_yll060c_1_result_1,trial_on_rich_globalmaxod_yll060c_1_result_1_proc).
procedure(trial_on_rich_globalmaxod_yll060c_1_result_1_proc).
has_representation(trial_on_rich_globalmaxod_yll060c_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_yll060c_1_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_yll060c_1_result,trial_on_rich_globalmaxod_yll060c_1_result_2).
has_representation(trial_on_rich_globalmaxod_yll060c_1_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_yll060c_1_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_yll060c_1_result_2,trial_on_rich_globalmaxod_yll060c_1_result_2_proc).
procedure(trial_on_rich_globalmaxod_yll060c_1_result_2_proc).
has_representation(trial_on_rich_globalmaxod_yll060c_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_yll060c_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_yll060c_2,trial_on_rich_globalmaxod_yll060c_2_design).
design(trial_on_rich_globalmaxod_yll060c_2_design).
has_proposition(trial_on_rich_globalmaxod_yll060c_2_design,trial_on_rich_globalmaxod_yll060c_2_factor).
factor(trial_on_rich_globalmaxod_yll060c_2_factor).
has_representation(trial_on_rich_globalmaxod_yll060c_2_factor,'presence or absence of yll060c').
has_input(trial_on_rich_globalmaxod_yll060c_2,trial_on_rich_globalmaxod_yll060c_2_data).
data(trial_on_rich_globalmaxod_yll060c_2_data).
has_part(trial_on_rich_globalmaxod_yll060c_2_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_yll060c_2_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_yll060c_2_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_yll060c_2,'mar07-trial4_expt1-plate002').
plate('mar07-trial4_expt1-plate002').
has_proposition(trial_on_rich_globalmaxod_yll060c_2,trial_on_rich_globalmaxod_yll060c_2_result).
result(trial_on_rich_globalmaxod_yll060c_2_result).
has_part(trial_on_rich_globalmaxod_yll060c_2_result,trial_on_rich_globalmaxod_yll060c_2_result_1).
has_representation(trial_on_rich_globalmaxod_yll060c_2_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_yll060c_2_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_yll060c_2_result_1,trial_on_rich_globalmaxod_yll060c_2_result_1_proc).
procedure(trial_on_rich_globalmaxod_yll060c_2_result_1_proc).
has_representation(trial_on_rich_globalmaxod_yll060c_2_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_yll060c_2_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_yll060c_2_result,trial_on_rich_globalmaxod_yll060c_2_result_2).
has_representation(trial_on_rich_globalmaxod_yll060c_2_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_yll060c_2_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_yll060c_2_result_2,trial_on_rich_globalmaxod_yll060c_2_result_2_proc).
procedure(trial_on_rich_globalmaxod_yll060c_2_result_2_proc).
has_representation(trial_on_rich_globalmaxod_yll060c_2_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_yll060c_2_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_yll060c_3,trial_on_rich_globalmaxod_yll060c_3_design).
design(trial_on_rich_globalmaxod_yll060c_3_design).
has_proposition(trial_on_rich_globalmaxod_yll060c_3_design,trial_on_rich_globalmaxod_yll060c_3_factor).
factor(trial_on_rich_globalmaxod_yll060c_3_factor).
has_representation(trial_on_rich_globalmaxod_yll060c_3_factor,'presence or absence of yll060c').
has_input(trial_on_rich_globalmaxod_yll060c_3,trial_on_rich_globalmaxod_yll060c_3_data).
data(trial_on_rich_globalmaxod_yll060c_3_data).
has_part(trial_on_rich_globalmaxod_yll060c_3_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_yll060c_3_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_yll060c_3_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_yll060c_3,'mar07-trial5_expt001-plate005').
plate('mar07-trial5_expt001-plate005').
has_proposition(trial_on_rich_globalmaxod_yll060c_3,trial_on_rich_globalmaxod_yll060c_3_result).
result(trial_on_rich_globalmaxod_yll060c_3_result).
has_part(trial_on_rich_globalmaxod_yll060c_3_result,trial_on_rich_globalmaxod_yll060c_3_result_1).
has_representation(trial_on_rich_globalmaxod_yll060c_3_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_yll060c_3_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_yll060c_3_result_1,trial_on_rich_globalmaxod_yll060c_3_result_1_proc).
procedure(trial_on_rich_globalmaxod_yll060c_3_result_1_proc).
has_representation(trial_on_rich_globalmaxod_yll060c_3_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_yll060c_3_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_yll060c_3_result,trial_on_rich_globalmaxod_yll060c_3_result_2).
has_representation(trial_on_rich_globalmaxod_yll060c_3_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_yll060c_3_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_yll060c_3_result_2,trial_on_rich_globalmaxod_yll060c_3_result_2_proc).
procedure(trial_on_rich_globalmaxod_yll060c_3_result_2_proc).
has_representation(trial_on_rich_globalmaxod_yll060c_3_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_yll060c_3_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_yll060c_4,trial_on_rich_globalmaxod_yll060c_4_design).
design(trial_on_rich_globalmaxod_yll060c_4_design).
has_proposition(trial_on_rich_globalmaxod_yll060c_4_design,trial_on_rich_globalmaxod_yll060c_4_factor).
factor(trial_on_rich_globalmaxod_yll060c_4_factor).
has_representation(trial_on_rich_globalmaxod_yll060c_4_factor,'presence or absence of yll060c').
has_input(trial_on_rich_globalmaxod_yll060c_4,trial_on_rich_globalmaxod_yll060c_4_data).
data(trial_on_rich_globalmaxod_yll060c_4_data).
has_part(trial_on_rich_globalmaxod_yll060c_4_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_yll060c_4_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_yll060c_4_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_yll060c_4,'mar07-trial9_expt001-plate001').
plate('mar07-trial9_expt001-plate001').
has_proposition(trial_on_rich_globalmaxod_yll060c_4,trial_on_rich_globalmaxod_yll060c_4_result).
result(trial_on_rich_globalmaxod_yll060c_4_result).
has_part(trial_on_rich_globalmaxod_yll060c_4_result,trial_on_rich_globalmaxod_yll060c_4_result_1).
has_representation(trial_on_rich_globalmaxod_yll060c_4_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_yll060c_4_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_yll060c_4_result_1,trial_on_rich_globalmaxod_yll060c_4_result_1_proc).
procedure(trial_on_rich_globalmaxod_yll060c_4_result_1_proc).
has_representation(trial_on_rich_globalmaxod_yll060c_4_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_yll060c_4_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_yll060c_4_result,trial_on_rich_globalmaxod_yll060c_4_result_2).
has_representation(trial_on_rich_globalmaxod_yll060c_4_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_yll060c_4_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_yll060c_4_result_2,trial_on_rich_globalmaxod_yll060c_4_result_2_proc).
procedure(trial_on_rich_globalmaxod_yll060c_4_result_2_proc).
has_representation(trial_on_rich_globalmaxod_yll060c_4_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_yll060c_4_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_yll060c_5,trial_on_rich_globalmaxod_yll060c_5_design).
design(trial_on_rich_globalmaxod_yll060c_5_design).
has_proposition(trial_on_rich_globalmaxod_yll060c_5_design,trial_on_rich_globalmaxod_yll060c_5_factor).
factor(trial_on_rich_globalmaxod_yll060c_5_factor).
has_representation(trial_on_rich_globalmaxod_yll060c_5_factor,'presence or absence of yll060c').
has_input(trial_on_rich_globalmaxod_yll060c_5,trial_on_rich_globalmaxod_yll060c_5_data).
data(trial_on_rich_globalmaxod_yll060c_5_data).
has_part(trial_on_rich_globalmaxod_yll060c_5_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_yll060c_5_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_yll060c_5_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_yll060c_5,'mar07-trial9_expt001-plate002').
plate('mar07-trial9_expt001-plate002').
has_proposition(trial_on_rich_globalmaxod_yll060c_5,trial_on_rich_globalmaxod_yll060c_5_result).
result(trial_on_rich_globalmaxod_yll060c_5_result).
has_part(trial_on_rich_globalmaxod_yll060c_5_result,trial_on_rich_globalmaxod_yll060c_5_result_1).
has_representation(trial_on_rich_globalmaxod_yll060c_5_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_yll060c_5_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_yll060c_5_result_1,trial_on_rich_globalmaxod_yll060c_5_result_1_proc).
procedure(trial_on_rich_globalmaxod_yll060c_5_result_1_proc).
has_representation(trial_on_rich_globalmaxod_yll060c_5_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_yll060c_5_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_yll060c_5_result,trial_on_rich_globalmaxod_yll060c_5_result_2).
has_representation(trial_on_rich_globalmaxod_yll060c_5_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_yll060c_5_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_yll060c_5_result_2,trial_on_rich_globalmaxod_yll060c_5_result_2_proc).
procedure(trial_on_rich_globalmaxod_yll060c_5_result_2_proc).
has_representation(trial_on_rich_globalmaxod_yll060c_5_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_yll060c_5_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_yll060c,trial_on_rich_globalmaxod_yll060c_results).
result(trial_on_rich_globalmaxod_yll060c_results).
has_part(trial_on_rich_globalmaxod_yll060c_results,trial_on_rich_globalmaxod_yll060c_results_1).
has_representation(trial_on_rich_globalmaxod_yll060c_results_1,'median of knockout medians missing yll060c').
text_representation('median of knockout medians missing yll060c').
has_proposition(trial_on_rich_globalmaxod_yll060c_results_1,trial_on_rich_globalmaxod_yll060c_results_1_proc).
procedure(trial_on_rich_globalmaxod_yll060c_results_1_proc).
has_proposition(trial_on_rich_globalmaxod_yll060c_results_1_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_rich_globalmaxod_yll060c_results,trial_on_rich_globalmaxod_yll060c_results_2).
has_representation(trial_on_rich_globalmaxod_yll060c_results_2,'median of wild type medians').
text_representation('median of wild type medians').
has_proposition(trial_on_rich_globalmaxod_yll060c_results_2,trial_on_rich_globalmaxod_yll060c_results_2_proc).
procedure(trial_on_rich_globalmaxod_yll060c_results_2_proc).
has_proposition(trial_on_rich_globalmaxod_yll060c_results_2_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_rich_globalmaxod_yll060c_results,trial_on_rich_globalmaxod_yll060c_results_3).
has_representation(trial_on_rich_globalmaxod_yll060c_results_3,'difference between trial_on_rich_globalmaxod_yll060c_results_1 and trial_on_rich_globalmaxod_yll060c_results_2').
text_representation('difference between trial_on_rich_globalmaxod_yll060c_results_1 and trial_on_rich_globalmaxod_yll060c_results_2').
has_proposition(study_on_rich_globalmaxod,study_on_rich_globalmaxod_result).
result(study_on_rich_globalmaxod_result).
has_part(study_on_rich_globalmaxod_result,study_on_rich_globalmaxod_result_1).
has_representation(study_on_rich_globalmaxod_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_rich_globalmaxod_result_1,'results/wr_kr_global_max_od.csv').
link('results/wr_kr_global_max_od.csv').
has_proposition(study_on_rich_globalmaxod_result_1,study_on_rich_globalmaxod_result_1_proc).
procedure(study_on_rich_globalmaxod_result_1_proc).
has_proposition(study_on_rich_globalmaxod_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_rich_globalmaxod_result,study_on_rich_globalmaxod_result_2).
has_representation(study_on_rich_globalmaxod_result_2,'bar graph (histogram) plotting study_on_rich_globalmaxod_result_1').
text_representation('bar graph (histogram) plotting study_on_rich_globalmaxod_result_1').
has_proposition(study_on_rich_globalmaxod_result_2,'results/overlayed_global_max_od0.8.tiff').
link('results/overlayed_global_max_od0.8.tiff').
has_proposition(study_on_rich_globalmaxod_result_2,study_on_rich_globalmaxod_result_2_proc).
procedure(study_on_rich_globalmaxod_result_2_proc).
has_proposition(study_on_rich_globalmaxod_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_rich_globalmaxod,study_on_rich_globalmaxod_conclusion).
conclusion(study_on_rich_globalmaxod_conclusion).
has_representation(study_on_rich_globalmaxod_conclusion,'The knockouts reach a lower global_max_od in rich than the wild type').
text_representation('The knockouts reach a lower global_max_od in rich than the wild type').
has_proposition(study_on_rich_globalmaxod_conclusion,'obtain statistical mode of study_on_rich_globalmaxod_result_1').
procedure('obtain statistical mode of study_on_rich_globalmaxod_result_1').
text_representation('obtain statistical mode of study_on_rich_globalmaxod_result_1').
has_part(study_on_rich_globalmaxod,trial_on_rich_globalmaxod_ylr070c).
trial(trial_on_rich_globalmaxod_ylr070c).
has_agent(trial_on_rich_globalmaxod_ylr070c,ylr070c).
strain(ylr070c).
has_proposition(trial_on_rich_globalmaxod_ylr070c_1,trial_on_rich_globalmaxod_ylr070c_1_design).
design(trial_on_rich_globalmaxod_ylr070c_1_design).
has_proposition(trial_on_rich_globalmaxod_ylr070c_1_design,trial_on_rich_globalmaxod_ylr070c_1_factor).
factor(trial_on_rich_globalmaxod_ylr070c_1_factor).
has_representation(trial_on_rich_globalmaxod_ylr070c_1_factor,'presence or absence of ylr070c').
has_input(trial_on_rich_globalmaxod_ylr070c_1,trial_on_rich_globalmaxod_ylr070c_1_data).
data(trial_on_rich_globalmaxod_ylr070c_1_data).
has_part(trial_on_rich_globalmaxod_ylr070c_1_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_ylr070c_1_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_ylr070c_1_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_ylr070c_1,'jan07-trial1_expt001-plate002').
plate('jan07-trial1_expt001-plate002').
has_proposition(trial_on_rich_globalmaxod_ylr070c_1,trial_on_rich_globalmaxod_ylr070c_1_result).
result(trial_on_rich_globalmaxod_ylr070c_1_result).
has_part(trial_on_rich_globalmaxod_ylr070c_1_result,trial_on_rich_globalmaxod_ylr070c_1_result_1).
has_representation(trial_on_rich_globalmaxod_ylr070c_1_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_ylr070c_1_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ylr070c_1_result_1,trial_on_rich_globalmaxod_ylr070c_1_result_1_proc).
procedure(trial_on_rich_globalmaxod_ylr070c_1_result_1_proc).
has_representation(trial_on_rich_globalmaxod_ylr070c_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ylr070c_1_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_ylr070c_1_result,trial_on_rich_globalmaxod_ylr070c_1_result_2).
has_representation(trial_on_rich_globalmaxod_ylr070c_1_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_ylr070c_1_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ylr070c_1_result_2,trial_on_rich_globalmaxod_ylr070c_1_result_2_proc).
procedure(trial_on_rich_globalmaxod_ylr070c_1_result_2_proc).
has_representation(trial_on_rich_globalmaxod_ylr070c_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ylr070c_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_ylr070c_2,trial_on_rich_globalmaxod_ylr070c_2_design).
design(trial_on_rich_globalmaxod_ylr070c_2_design).
has_proposition(trial_on_rich_globalmaxod_ylr070c_2_design,trial_on_rich_globalmaxod_ylr070c_2_factor).
factor(trial_on_rich_globalmaxod_ylr070c_2_factor).
has_representation(trial_on_rich_globalmaxod_ylr070c_2_factor,'presence or absence of ylr070c').
has_input(trial_on_rich_globalmaxod_ylr070c_2,trial_on_rich_globalmaxod_ylr070c_2_data).
data(trial_on_rich_globalmaxod_ylr070c_2_data).
has_part(trial_on_rich_globalmaxod_ylr070c_2_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_ylr070c_2_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_ylr070c_2_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_ylr070c_2,'jan07-trial1_expt001-plate003').
plate('jan07-trial1_expt001-plate003').
has_proposition(trial_on_rich_globalmaxod_ylr070c_2,trial_on_rich_globalmaxod_ylr070c_2_result).
result(trial_on_rich_globalmaxod_ylr070c_2_result).
has_part(trial_on_rich_globalmaxod_ylr070c_2_result,trial_on_rich_globalmaxod_ylr070c_2_result_1).
has_representation(trial_on_rich_globalmaxod_ylr070c_2_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_ylr070c_2_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ylr070c_2_result_1,trial_on_rich_globalmaxod_ylr070c_2_result_1_proc).
procedure(trial_on_rich_globalmaxod_ylr070c_2_result_1_proc).
has_representation(trial_on_rich_globalmaxod_ylr070c_2_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ylr070c_2_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_ylr070c_2_result,trial_on_rich_globalmaxod_ylr070c_2_result_2).
has_representation(trial_on_rich_globalmaxod_ylr070c_2_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_ylr070c_2_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ylr070c_2_result_2,trial_on_rich_globalmaxod_ylr070c_2_result_2_proc).
procedure(trial_on_rich_globalmaxod_ylr070c_2_result_2_proc).
has_representation(trial_on_rich_globalmaxod_ylr070c_2_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ylr070c_2_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_ylr070c_3,trial_on_rich_globalmaxod_ylr070c_3_design).
design(trial_on_rich_globalmaxod_ylr070c_3_design).
has_proposition(trial_on_rich_globalmaxod_ylr070c_3_design,trial_on_rich_globalmaxod_ylr070c_3_factor).
factor(trial_on_rich_globalmaxod_ylr070c_3_factor).
has_representation(trial_on_rich_globalmaxod_ylr070c_3_factor,'presence or absence of ylr070c').
has_input(trial_on_rich_globalmaxod_ylr070c_3,trial_on_rich_globalmaxod_ylr070c_3_data).
data(trial_on_rich_globalmaxod_ylr070c_3_data).
has_part(trial_on_rich_globalmaxod_ylr070c_3_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_ylr070c_3_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_ylr070c_3_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_ylr070c_3,'jan07-trial2_expt001-plate007').
plate('jan07-trial2_expt001-plate007').
has_proposition(trial_on_rich_globalmaxod_ylr070c_3,trial_on_rich_globalmaxod_ylr070c_3_result).
result(trial_on_rich_globalmaxod_ylr070c_3_result).
has_part(trial_on_rich_globalmaxod_ylr070c_3_result,trial_on_rich_globalmaxod_ylr070c_3_result_1).
has_representation(trial_on_rich_globalmaxod_ylr070c_3_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_ylr070c_3_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ylr070c_3_result_1,trial_on_rich_globalmaxod_ylr070c_3_result_1_proc).
procedure(trial_on_rich_globalmaxod_ylr070c_3_result_1_proc).
has_representation(trial_on_rich_globalmaxod_ylr070c_3_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ylr070c_3_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_ylr070c_3_result,trial_on_rich_globalmaxod_ylr070c_3_result_2).
has_representation(trial_on_rich_globalmaxod_ylr070c_3_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_ylr070c_3_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ylr070c_3_result_2,trial_on_rich_globalmaxod_ylr070c_3_result_2_proc).
procedure(trial_on_rich_globalmaxod_ylr070c_3_result_2_proc).
has_representation(trial_on_rich_globalmaxod_ylr070c_3_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ylr070c_3_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_ylr070c_4,trial_on_rich_globalmaxod_ylr070c_4_design).
design(trial_on_rich_globalmaxod_ylr070c_4_design).
has_proposition(trial_on_rich_globalmaxod_ylr070c_4_design,trial_on_rich_globalmaxod_ylr070c_4_factor).
factor(trial_on_rich_globalmaxod_ylr070c_4_factor).
has_representation(trial_on_rich_globalmaxod_ylr070c_4_factor,'presence or absence of ylr070c').
has_input(trial_on_rich_globalmaxod_ylr070c_4,trial_on_rich_globalmaxod_ylr070c_4_data).
data(trial_on_rich_globalmaxod_ylr070c_4_data).
has_part(trial_on_rich_globalmaxod_ylr070c_4_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_ylr070c_4_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_ylr070c_4_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_ylr070c_4,'jan07-trial2_expt001-plate008').
plate('jan07-trial2_expt001-plate008').
has_proposition(trial_on_rich_globalmaxod_ylr070c_4,trial_on_rich_globalmaxod_ylr070c_4_result).
result(trial_on_rich_globalmaxod_ylr070c_4_result).
has_part(trial_on_rich_globalmaxod_ylr070c_4_result,trial_on_rich_globalmaxod_ylr070c_4_result_1).
has_representation(trial_on_rich_globalmaxod_ylr070c_4_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_ylr070c_4_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ylr070c_4_result_1,trial_on_rich_globalmaxod_ylr070c_4_result_1_proc).
procedure(trial_on_rich_globalmaxod_ylr070c_4_result_1_proc).
has_representation(trial_on_rich_globalmaxod_ylr070c_4_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ylr070c_4_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_ylr070c_4_result,trial_on_rich_globalmaxod_ylr070c_4_result_2).
has_representation(trial_on_rich_globalmaxod_ylr070c_4_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_ylr070c_4_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ylr070c_4_result_2,trial_on_rich_globalmaxod_ylr070c_4_result_2_proc).
procedure(trial_on_rich_globalmaxod_ylr070c_4_result_2_proc).
has_representation(trial_on_rich_globalmaxod_ylr070c_4_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ylr070c_4_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_ylr070c_5,trial_on_rich_globalmaxod_ylr070c_5_design).
design(trial_on_rich_globalmaxod_ylr070c_5_design).
has_proposition(trial_on_rich_globalmaxod_ylr070c_5_design,trial_on_rich_globalmaxod_ylr070c_5_factor).
factor(trial_on_rich_globalmaxod_ylr070c_5_factor).
has_representation(trial_on_rich_globalmaxod_ylr070c_5_factor,'presence or absence of ylr070c').
has_input(trial_on_rich_globalmaxod_ylr070c_5,trial_on_rich_globalmaxod_ylr070c_5_data).
data(trial_on_rich_globalmaxod_ylr070c_5_data).
has_part(trial_on_rich_globalmaxod_ylr070c_5_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_ylr070c_5_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_ylr070c_5_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_ylr070c_5,'jan07-trial2_expt001-plate009').
plate('jan07-trial2_expt001-plate009').
has_proposition(trial_on_rich_globalmaxod_ylr070c_5,trial_on_rich_globalmaxod_ylr070c_5_result).
result(trial_on_rich_globalmaxod_ylr070c_5_result).
has_part(trial_on_rich_globalmaxod_ylr070c_5_result,trial_on_rich_globalmaxod_ylr070c_5_result_1).
has_representation(trial_on_rich_globalmaxod_ylr070c_5_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_ylr070c_5_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ylr070c_5_result_1,trial_on_rich_globalmaxod_ylr070c_5_result_1_proc).
procedure(trial_on_rich_globalmaxod_ylr070c_5_result_1_proc).
has_representation(trial_on_rich_globalmaxod_ylr070c_5_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ylr070c_5_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_ylr070c_5_result,trial_on_rich_globalmaxod_ylr070c_5_result_2).
has_representation(trial_on_rich_globalmaxod_ylr070c_5_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_ylr070c_5_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ylr070c_5_result_2,trial_on_rich_globalmaxod_ylr070c_5_result_2_proc).
procedure(trial_on_rich_globalmaxod_ylr070c_5_result_2_proc).
has_representation(trial_on_rich_globalmaxod_ylr070c_5_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ylr070c_5_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_ylr070c_6,trial_on_rich_globalmaxod_ylr070c_6_design).
design(trial_on_rich_globalmaxod_ylr070c_6_design).
has_proposition(trial_on_rich_globalmaxod_ylr070c_6_design,trial_on_rich_globalmaxod_ylr070c_6_factor).
factor(trial_on_rich_globalmaxod_ylr070c_6_factor).
has_representation(trial_on_rich_globalmaxod_ylr070c_6_factor,'presence or absence of ylr070c').
has_input(trial_on_rich_globalmaxod_ylr070c_6,trial_on_rich_globalmaxod_ylr070c_6_data).
data(trial_on_rich_globalmaxod_ylr070c_6_data).
has_part(trial_on_rich_globalmaxod_ylr070c_6_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_ylr070c_6_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_ylr070c_6_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_ylr070c_6,'jan07-trial2_expt001-plate010').
plate('jan07-trial2_expt001-plate010').
has_proposition(trial_on_rich_globalmaxod_ylr070c_6,trial_on_rich_globalmaxod_ylr070c_6_result).
result(trial_on_rich_globalmaxod_ylr070c_6_result).
has_part(trial_on_rich_globalmaxod_ylr070c_6_result,trial_on_rich_globalmaxod_ylr070c_6_result_1).
has_representation(trial_on_rich_globalmaxod_ylr070c_6_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_ylr070c_6_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ylr070c_6_result_1,trial_on_rich_globalmaxod_ylr070c_6_result_1_proc).
procedure(trial_on_rich_globalmaxod_ylr070c_6_result_1_proc).
has_representation(trial_on_rich_globalmaxod_ylr070c_6_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ylr070c_6_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_ylr070c_6_result,trial_on_rich_globalmaxod_ylr070c_6_result_2).
has_representation(trial_on_rich_globalmaxod_ylr070c_6_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_ylr070c_6_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ylr070c_6_result_2,trial_on_rich_globalmaxod_ylr070c_6_result_2_proc).
procedure(trial_on_rich_globalmaxod_ylr070c_6_result_2_proc).
has_representation(trial_on_rich_globalmaxod_ylr070c_6_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ylr070c_6_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_ylr070c,trial_on_rich_globalmaxod_ylr070c_results).
result(trial_on_rich_globalmaxod_ylr070c_results).
has_part(trial_on_rich_globalmaxod_ylr070c_results,trial_on_rich_globalmaxod_ylr070c_results_1).
has_representation(trial_on_rich_globalmaxod_ylr070c_results_1,'median of knockout medians missing ylr070c').
text_representation('median of knockout medians missing ylr070c').
has_proposition(trial_on_rich_globalmaxod_ylr070c_results_1,trial_on_rich_globalmaxod_ylr070c_results_1_proc).
procedure(trial_on_rich_globalmaxod_ylr070c_results_1_proc).
has_proposition(trial_on_rich_globalmaxod_ylr070c_results_1_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_rich_globalmaxod_ylr070c_results,trial_on_rich_globalmaxod_ylr070c_results_2).
has_representation(trial_on_rich_globalmaxod_ylr070c_results_2,'median of wild type medians').
text_representation('median of wild type medians').
has_proposition(trial_on_rich_globalmaxod_ylr070c_results_2,trial_on_rich_globalmaxod_ylr070c_results_2_proc).
procedure(trial_on_rich_globalmaxod_ylr070c_results_2_proc).
has_proposition(trial_on_rich_globalmaxod_ylr070c_results_2_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_rich_globalmaxod_ylr070c_results,trial_on_rich_globalmaxod_ylr070c_results_3).
has_representation(trial_on_rich_globalmaxod_ylr070c_results_3,'difference between trial_on_rich_globalmaxod_ylr070c_results_1 and trial_on_rich_globalmaxod_ylr070c_results_2').
text_representation('difference between trial_on_rich_globalmaxod_ylr070c_results_1 and trial_on_rich_globalmaxod_ylr070c_results_2').
has_proposition(study_on_rich_globalmaxod,study_on_rich_globalmaxod_result).
result(study_on_rich_globalmaxod_result).
has_part(study_on_rich_globalmaxod_result,study_on_rich_globalmaxod_result_1).
has_representation(study_on_rich_globalmaxod_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_rich_globalmaxod_result_1,'results/wr_kr_global_max_od.csv').
link('results/wr_kr_global_max_od.csv').
has_proposition(study_on_rich_globalmaxod_result_1,study_on_rich_globalmaxod_result_1_proc).
procedure(study_on_rich_globalmaxod_result_1_proc).
has_proposition(study_on_rich_globalmaxod_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_rich_globalmaxod_result,study_on_rich_globalmaxod_result_2).
has_representation(study_on_rich_globalmaxod_result_2,'bar graph (histogram) plotting study_on_rich_globalmaxod_result_1').
text_representation('bar graph (histogram) plotting study_on_rich_globalmaxod_result_1').
has_proposition(study_on_rich_globalmaxod_result_2,'results/overlayed_global_max_od0.8.tiff').
link('results/overlayed_global_max_od0.8.tiff').
has_proposition(study_on_rich_globalmaxod_result_2,study_on_rich_globalmaxod_result_2_proc).
procedure(study_on_rich_globalmaxod_result_2_proc).
has_proposition(study_on_rich_globalmaxod_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_rich_globalmaxod,study_on_rich_globalmaxod_conclusion).
conclusion(study_on_rich_globalmaxod_conclusion).
has_representation(study_on_rich_globalmaxod_conclusion,'The knockouts reach a lower global_max_od in rich than the wild type').
text_representation('The knockouts reach a lower global_max_od in rich than the wild type').
has_proposition(study_on_rich_globalmaxod_conclusion,'obtain statistical mode of study_on_rich_globalmaxod_result_1').
procedure('obtain statistical mode of study_on_rich_globalmaxod_result_1').
text_representation('obtain statistical mode of study_on_rich_globalmaxod_result_1').
has_part(study_on_rich_globalmaxod,trial_on_rich_globalmaxod_ypr121w).
trial(trial_on_rich_globalmaxod_ypr121w).
has_agent(trial_on_rich_globalmaxod_ypr121w,ypr121w).
strain(ypr121w).
has_proposition(trial_on_rich_globalmaxod_ypr121w_1,trial_on_rich_globalmaxod_ypr121w_1_design).
design(trial_on_rich_globalmaxod_ypr121w_1_design).
has_proposition(trial_on_rich_globalmaxod_ypr121w_1_design,trial_on_rich_globalmaxod_ypr121w_1_factor).
factor(trial_on_rich_globalmaxod_ypr121w_1_factor).
has_representation(trial_on_rich_globalmaxod_ypr121w_1_factor,'presence or absence of ypr121w').
has_input(trial_on_rich_globalmaxod_ypr121w_1,trial_on_rich_globalmaxod_ypr121w_1_data).
data(trial_on_rich_globalmaxod_ypr121w_1_data).
has_part(trial_on_rich_globalmaxod_ypr121w_1_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_ypr121w_1_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_ypr121w_1_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_ypr121w_1,'feb07-trial1_expt001-plate005').
plate('feb07-trial1_expt001-plate005').
has_proposition(trial_on_rich_globalmaxod_ypr121w_1,trial_on_rich_globalmaxod_ypr121w_1_result).
result(trial_on_rich_globalmaxod_ypr121w_1_result).
has_part(trial_on_rich_globalmaxod_ypr121w_1_result,trial_on_rich_globalmaxod_ypr121w_1_result_1).
has_representation(trial_on_rich_globalmaxod_ypr121w_1_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_ypr121w_1_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ypr121w_1_result_1,trial_on_rich_globalmaxod_ypr121w_1_result_1_proc).
procedure(trial_on_rich_globalmaxod_ypr121w_1_result_1_proc).
has_representation(trial_on_rich_globalmaxod_ypr121w_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ypr121w_1_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_ypr121w_1_result,trial_on_rich_globalmaxod_ypr121w_1_result_2).
has_representation(trial_on_rich_globalmaxod_ypr121w_1_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_ypr121w_1_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ypr121w_1_result_2,trial_on_rich_globalmaxod_ypr121w_1_result_2_proc).
procedure(trial_on_rich_globalmaxod_ypr121w_1_result_2_proc).
has_representation(trial_on_rich_globalmaxod_ypr121w_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ypr121w_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_ypr121w,trial_on_rich_globalmaxod_ypr121w_results).
result(trial_on_rich_globalmaxod_ypr121w_results).
has_part(trial_on_rich_globalmaxod_ypr121w_results,trial_on_rich_globalmaxod_ypr121w_results_1).
has_representation(trial_on_rich_globalmaxod_ypr121w_results_1,'median of knockout medians missing ypr121w').
text_representation('median of knockout medians missing ypr121w').
has_proposition(trial_on_rich_globalmaxod_ypr121w_results_1,trial_on_rich_globalmaxod_ypr121w_results_1_proc).
procedure(trial_on_rich_globalmaxod_ypr121w_results_1_proc).
has_proposition(trial_on_rich_globalmaxod_ypr121w_results_1_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_rich_globalmaxod_ypr121w_results,trial_on_rich_globalmaxod_ypr121w_results_2).
has_representation(trial_on_rich_globalmaxod_ypr121w_results_2,'median of wild type medians').
text_representation('median of wild type medians').
has_proposition(trial_on_rich_globalmaxod_ypr121w_results_2,trial_on_rich_globalmaxod_ypr121w_results_2_proc).
procedure(trial_on_rich_globalmaxod_ypr121w_results_2_proc).
has_proposition(trial_on_rich_globalmaxod_ypr121w_results_2_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_rich_globalmaxod_ypr121w_results,trial_on_rich_globalmaxod_ypr121w_results_3).
has_representation(trial_on_rich_globalmaxod_ypr121w_results_3,'difference between trial_on_rich_globalmaxod_ypr121w_results_1 and trial_on_rich_globalmaxod_ypr121w_results_2').
text_representation('difference between trial_on_rich_globalmaxod_ypr121w_results_1 and trial_on_rich_globalmaxod_ypr121w_results_2').
has_proposition(study_on_rich_globalmaxod,study_on_rich_globalmaxod_result).
result(study_on_rich_globalmaxod_result).
has_part(study_on_rich_globalmaxod_result,study_on_rich_globalmaxod_result_1).
has_representation(study_on_rich_globalmaxod_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_rich_globalmaxod_result_1,'results/wr_kr_global_max_od.csv').
link('results/wr_kr_global_max_od.csv').
has_proposition(study_on_rich_globalmaxod_result_1,study_on_rich_globalmaxod_result_1_proc).
procedure(study_on_rich_globalmaxod_result_1_proc).
has_proposition(study_on_rich_globalmaxod_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_rich_globalmaxod_result,study_on_rich_globalmaxod_result_2).
has_representation(study_on_rich_globalmaxod_result_2,'bar graph (histogram) plotting study_on_rich_globalmaxod_result_1').
text_representation('bar graph (histogram) plotting study_on_rich_globalmaxod_result_1').
has_proposition(study_on_rich_globalmaxod_result_2,'results/overlayed_global_max_od0.8.tiff').
link('results/overlayed_global_max_od0.8.tiff').
has_proposition(study_on_rich_globalmaxod_result_2,study_on_rich_globalmaxod_result_2_proc).
procedure(study_on_rich_globalmaxod_result_2_proc).
has_proposition(study_on_rich_globalmaxod_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_rich_globalmaxod,study_on_rich_globalmaxod_conclusion).
conclusion(study_on_rich_globalmaxod_conclusion).
has_representation(study_on_rich_globalmaxod_conclusion,'The knockouts reach a lower global_max_od in rich than the wild type').
text_representation('The knockouts reach a lower global_max_od in rich than the wild type').
has_proposition(study_on_rich_globalmaxod_conclusion,'obtain statistical mode of study_on_rich_globalmaxod_result_1').
procedure('obtain statistical mode of study_on_rich_globalmaxod_result_1').
text_representation('obtain statistical mode of study_on_rich_globalmaxod_result_1').
has_part(study_on_rich_globalmaxod,trial_on_rich_globalmaxod_ynr027w).
trial(trial_on_rich_globalmaxod_ynr027w).
has_agent(trial_on_rich_globalmaxod_ynr027w,ynr027w).
strain(ynr027w).
has_proposition(trial_on_rich_globalmaxod_ynr027w_1,trial_on_rich_globalmaxod_ynr027w_1_design).
design(trial_on_rich_globalmaxod_ynr027w_1_design).
has_proposition(trial_on_rich_globalmaxod_ynr027w_1_design,trial_on_rich_globalmaxod_ynr027w_1_factor).
factor(trial_on_rich_globalmaxod_ynr027w_1_factor).
has_representation(trial_on_rich_globalmaxod_ynr027w_1_factor,'presence or absence of ynr027w').
has_input(trial_on_rich_globalmaxod_ynr027w_1,trial_on_rich_globalmaxod_ynr027w_1_data).
data(trial_on_rich_globalmaxod_ynr027w_1_data).
has_part(trial_on_rich_globalmaxod_ynr027w_1_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_ynr027w_1_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_ynr027w_1_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_ynr027w_1,'jan07-trial1_expt001-plate010').
plate('jan07-trial1_expt001-plate010').
has_proposition(trial_on_rich_globalmaxod_ynr027w_1,trial_on_rich_globalmaxod_ynr027w_1_result).
result(trial_on_rich_globalmaxod_ynr027w_1_result).
has_part(trial_on_rich_globalmaxod_ynr027w_1_result,trial_on_rich_globalmaxod_ynr027w_1_result_1).
has_representation(trial_on_rich_globalmaxod_ynr027w_1_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_ynr027w_1_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ynr027w_1_result_1,trial_on_rich_globalmaxod_ynr027w_1_result_1_proc).
procedure(trial_on_rich_globalmaxod_ynr027w_1_result_1_proc).
has_representation(trial_on_rich_globalmaxod_ynr027w_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ynr027w_1_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_ynr027w_1_result,trial_on_rich_globalmaxod_ynr027w_1_result_2).
has_representation(trial_on_rich_globalmaxod_ynr027w_1_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_ynr027w_1_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ynr027w_1_result_2,trial_on_rich_globalmaxod_ynr027w_1_result_2_proc).
procedure(trial_on_rich_globalmaxod_ynr027w_1_result_2_proc).
has_representation(trial_on_rich_globalmaxod_ynr027w_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ynr027w_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_ynr027w_2,trial_on_rich_globalmaxod_ynr027w_2_design).
design(trial_on_rich_globalmaxod_ynr027w_2_design).
has_proposition(trial_on_rich_globalmaxod_ynr027w_2_design,trial_on_rich_globalmaxod_ynr027w_2_factor).
factor(trial_on_rich_globalmaxod_ynr027w_2_factor).
has_representation(trial_on_rich_globalmaxod_ynr027w_2_factor,'presence or absence of ynr027w').
has_input(trial_on_rich_globalmaxod_ynr027w_2,trial_on_rich_globalmaxod_ynr027w_2_data).
data(trial_on_rich_globalmaxod_ynr027w_2_data).
has_part(trial_on_rich_globalmaxod_ynr027w_2_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_ynr027w_2_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_ynr027w_2_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_ynr027w_2,'mar07-trial1_expt001-plate002').
plate('mar07-trial1_expt001-plate002').
has_proposition(trial_on_rich_globalmaxod_ynr027w_2,trial_on_rich_globalmaxod_ynr027w_2_result).
result(trial_on_rich_globalmaxod_ynr027w_2_result).
has_part(trial_on_rich_globalmaxod_ynr027w_2_result,trial_on_rich_globalmaxod_ynr027w_2_result_1).
has_representation(trial_on_rich_globalmaxod_ynr027w_2_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_ynr027w_2_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ynr027w_2_result_1,trial_on_rich_globalmaxod_ynr027w_2_result_1_proc).
procedure(trial_on_rich_globalmaxod_ynr027w_2_result_1_proc).
has_representation(trial_on_rich_globalmaxod_ynr027w_2_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ynr027w_2_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_ynr027w_2_result,trial_on_rich_globalmaxod_ynr027w_2_result_2).
has_representation(trial_on_rich_globalmaxod_ynr027w_2_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_ynr027w_2_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ynr027w_2_result_2,trial_on_rich_globalmaxod_ynr027w_2_result_2_proc).
procedure(trial_on_rich_globalmaxod_ynr027w_2_result_2_proc).
has_representation(trial_on_rich_globalmaxod_ynr027w_2_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ynr027w_2_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_ynr027w,trial_on_rich_globalmaxod_ynr027w_results).
result(trial_on_rich_globalmaxod_ynr027w_results).
has_part(trial_on_rich_globalmaxod_ynr027w_results,trial_on_rich_globalmaxod_ynr027w_results_1).
has_representation(trial_on_rich_globalmaxod_ynr027w_results_1,'median of knockout medians missing ynr027w').
text_representation('median of knockout medians missing ynr027w').
has_proposition(trial_on_rich_globalmaxod_ynr027w_results_1,trial_on_rich_globalmaxod_ynr027w_results_1_proc).
procedure(trial_on_rich_globalmaxod_ynr027w_results_1_proc).
has_proposition(trial_on_rich_globalmaxod_ynr027w_results_1_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_rich_globalmaxod_ynr027w_results,trial_on_rich_globalmaxod_ynr027w_results_2).
has_representation(trial_on_rich_globalmaxod_ynr027w_results_2,'median of wild type medians').
text_representation('median of wild type medians').
has_proposition(trial_on_rich_globalmaxod_ynr027w_results_2,trial_on_rich_globalmaxod_ynr027w_results_2_proc).
procedure(trial_on_rich_globalmaxod_ynr027w_results_2_proc).
has_proposition(trial_on_rich_globalmaxod_ynr027w_results_2_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_rich_globalmaxod_ynr027w_results,trial_on_rich_globalmaxod_ynr027w_results_3).
has_representation(trial_on_rich_globalmaxod_ynr027w_results_3,'difference between trial_on_rich_globalmaxod_ynr027w_results_1 and trial_on_rich_globalmaxod_ynr027w_results_2').
text_representation('difference between trial_on_rich_globalmaxod_ynr027w_results_1 and trial_on_rich_globalmaxod_ynr027w_results_2').
has_proposition(study_on_rich_globalmaxod,study_on_rich_globalmaxod_result).
result(study_on_rich_globalmaxod_result).
has_part(study_on_rich_globalmaxod_result,study_on_rich_globalmaxod_result_1).
has_representation(study_on_rich_globalmaxod_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_rich_globalmaxod_result_1,'results/wr_kr_global_max_od.csv').
link('results/wr_kr_global_max_od.csv').
has_proposition(study_on_rich_globalmaxod_result_1,study_on_rich_globalmaxod_result_1_proc).
procedure(study_on_rich_globalmaxod_result_1_proc).
has_proposition(study_on_rich_globalmaxod_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_rich_globalmaxod_result,study_on_rich_globalmaxod_result_2).
has_representation(study_on_rich_globalmaxod_result_2,'bar graph (histogram) plotting study_on_rich_globalmaxod_result_1').
text_representation('bar graph (histogram) plotting study_on_rich_globalmaxod_result_1').
has_proposition(study_on_rich_globalmaxod_result_2,'results/overlayed_global_max_od0.8.tiff').
link('results/overlayed_global_max_od0.8.tiff').
has_proposition(study_on_rich_globalmaxod_result_2,study_on_rich_globalmaxod_result_2_proc).
procedure(study_on_rich_globalmaxod_result_2_proc).
has_proposition(study_on_rich_globalmaxod_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_rich_globalmaxod,study_on_rich_globalmaxod_conclusion).
conclusion(study_on_rich_globalmaxod_conclusion).
has_representation(study_on_rich_globalmaxod_conclusion,'The knockouts reach a lower global_max_od in rich than the wild type').
text_representation('The knockouts reach a lower global_max_od in rich than the wild type').
has_proposition(study_on_rich_globalmaxod_conclusion,'obtain statistical mode of study_on_rich_globalmaxod_result_1').
procedure('obtain statistical mode of study_on_rich_globalmaxod_result_1').
text_representation('obtain statistical mode of study_on_rich_globalmaxod_result_1').
has_part(study_on_rich_globalmaxod,trial_on_rich_globalmaxod_ygl202w).
trial(trial_on_rich_globalmaxod_ygl202w).
has_agent(trial_on_rich_globalmaxod_ygl202w,ygl202w).
strain(ygl202w).
has_proposition(trial_on_rich_globalmaxod_ygl202w_1,trial_on_rich_globalmaxod_ygl202w_1_design).
design(trial_on_rich_globalmaxod_ygl202w_1_design).
has_proposition(trial_on_rich_globalmaxod_ygl202w_1_design,trial_on_rich_globalmaxod_ygl202w_1_factor).
factor(trial_on_rich_globalmaxod_ygl202w_1_factor).
has_representation(trial_on_rich_globalmaxod_ygl202w_1_factor,'presence or absence of ygl202w').
has_input(trial_on_rich_globalmaxod_ygl202w_1,trial_on_rich_globalmaxod_ygl202w_1_data).
data(trial_on_rich_globalmaxod_ygl202w_1_data).
has_part(trial_on_rich_globalmaxod_ygl202w_1_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_ygl202w_1_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_ygl202w_1_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_ygl202w_1,'jan07-lyss1_expt001-plate001').
plate('jan07-lyss1_expt001-plate001').
has_proposition(trial_on_rich_globalmaxod_ygl202w_1,trial_on_rich_globalmaxod_ygl202w_1_result).
result(trial_on_rich_globalmaxod_ygl202w_1_result).
has_part(trial_on_rich_globalmaxod_ygl202w_1_result,trial_on_rich_globalmaxod_ygl202w_1_result_1).
has_representation(trial_on_rich_globalmaxod_ygl202w_1_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_ygl202w_1_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ygl202w_1_result_1,trial_on_rich_globalmaxod_ygl202w_1_result_1_proc).
procedure(trial_on_rich_globalmaxod_ygl202w_1_result_1_proc).
has_representation(trial_on_rich_globalmaxod_ygl202w_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ygl202w_1_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_ygl202w_1_result,trial_on_rich_globalmaxod_ygl202w_1_result_2).
has_representation(trial_on_rich_globalmaxod_ygl202w_1_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_ygl202w_1_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ygl202w_1_result_2,trial_on_rich_globalmaxod_ygl202w_1_result_2_proc).
procedure(trial_on_rich_globalmaxod_ygl202w_1_result_2_proc).
has_representation(trial_on_rich_globalmaxod_ygl202w_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ygl202w_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_ygl202w_2,trial_on_rich_globalmaxod_ygl202w_2_design).
design(trial_on_rich_globalmaxod_ygl202w_2_design).
has_proposition(trial_on_rich_globalmaxod_ygl202w_2_design,trial_on_rich_globalmaxod_ygl202w_2_factor).
factor(trial_on_rich_globalmaxod_ygl202w_2_factor).
has_representation(trial_on_rich_globalmaxod_ygl202w_2_factor,'presence or absence of ygl202w').
has_input(trial_on_rich_globalmaxod_ygl202w_2,trial_on_rich_globalmaxod_ygl202w_2_data).
data(trial_on_rich_globalmaxod_ygl202w_2_data).
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link('../data/').
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plate('jan07-lyss1_expt001-plate002').
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result(trial_on_rich_globalmaxod_ygl202w_2_result).
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result(trial_on_rich_globalmaxod_ykl211c_1_result).
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text_representation('median of knockout on rich').
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link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ykl211c_1_result_1,trial_on_rich_globalmaxod_ykl211c_1_result_1_proc).
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text_representation('procedure for obtaining median').
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link('proceduresplotKMedians.R').
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text_representation('median of wild type on rich').
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link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ykl211c_1_result_2,trial_on_rich_globalmaxod_ykl211c_1_result_2_proc).
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text_representation('procedure for obtaining median').
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link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_ykl211c_2,trial_on_rich_globalmaxod_ykl211c_2_design).
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factor(trial_on_rich_globalmaxod_ykl211c_2_factor).
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data(trial_on_rich_globalmaxod_ykl211c_2_data).
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link('../data/').
located_in(trial_on_rich_globalmaxod_ykl211c_2,'nature-loop3_expt002-plate007').
plate('nature-loop3_expt002-plate007').
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result(trial_on_rich_globalmaxod_ykl211c_2_result).
has_part(trial_on_rich_globalmaxod_ykl211c_2_result,trial_on_rich_globalmaxod_ykl211c_2_result_1).
has_representation(trial_on_rich_globalmaxod_ykl211c_2_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
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link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ykl211c_2_result_1,trial_on_rich_globalmaxod_ykl211c_2_result_1_proc).
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text_representation('procedure for obtaining median').
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link('proceduresplotKMedians.R').
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text_representation('median of wild type on rich').
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link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ykl211c_2_result_2,trial_on_rich_globalmaxod_ykl211c_2_result_2_proc).
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text_representation('procedure for obtaining median').
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link('procedures/plotWMedians.R').
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factor(trial_on_rich_globalmaxod_ykl211c_3_factor).
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link('../data/').
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plate('nature-loop3_expt003-plate002').
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result(trial_on_rich_globalmaxod_ykl211c_3_result).
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has_representation(trial_on_rich_globalmaxod_ykl211c_3_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
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link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ykl211c_3_result_1,trial_on_rich_globalmaxod_ykl211c_3_result_1_proc).
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text_representation('procedure for obtaining median').
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link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_ykl211c_3_result,trial_on_rich_globalmaxod_ykl211c_3_result_2).
has_representation(trial_on_rich_globalmaxod_ykl211c_3_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
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link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ykl211c_3_result_2,trial_on_rich_globalmaxod_ykl211c_3_result_2_proc).
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text_representation('procedure for obtaining median').
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link('procedures/plotWMedians.R').
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data(trial_on_rich_globalmaxod_ykl211c_4_data).
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link('../data/').
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plate('nature-loop3_expt004-plate007').
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result(trial_on_rich_globalmaxod_ykl211c_4_result).
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has_representation(trial_on_rich_globalmaxod_ykl211c_4_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
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link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ykl211c_4_result_1,trial_on_rich_globalmaxod_ykl211c_4_result_1_proc).
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has_representation(trial_on_rich_globalmaxod_ykl211c_4_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
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link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_ykl211c_4_result,trial_on_rich_globalmaxod_ykl211c_4_result_2).
has_representation(trial_on_rich_globalmaxod_ykl211c_4_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
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link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ykl211c_4_result_2,trial_on_rich_globalmaxod_ykl211c_4_result_2_proc).
procedure(trial_on_rich_globalmaxod_ykl211c_4_result_2_proc).
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text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ykl211c_4_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_ykl211c_5,trial_on_rich_globalmaxod_ykl211c_5_design).
design(trial_on_rich_globalmaxod_ykl211c_5_design).
has_proposition(trial_on_rich_globalmaxod_ykl211c_5_design,trial_on_rich_globalmaxod_ykl211c_5_factor).
factor(trial_on_rich_globalmaxod_ykl211c_5_factor).
has_representation(trial_on_rich_globalmaxod_ykl211c_5_factor,'presence or absence of ykl211c').
has_input(trial_on_rich_globalmaxod_ykl211c_5,trial_on_rich_globalmaxod_ykl211c_5_data).
data(trial_on_rich_globalmaxod_ykl211c_5_data).
has_part(trial_on_rich_globalmaxod_ykl211c_5_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_ykl211c_5_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_ykl211c_5_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_ykl211c_5,'nature-loop3_expt005-plate007').
plate('nature-loop3_expt005-plate007').
has_proposition(trial_on_rich_globalmaxod_ykl211c_5,trial_on_rich_globalmaxod_ykl211c_5_result).
result(trial_on_rich_globalmaxod_ykl211c_5_result).
has_part(trial_on_rich_globalmaxod_ykl211c_5_result,trial_on_rich_globalmaxod_ykl211c_5_result_1).
has_representation(trial_on_rich_globalmaxod_ykl211c_5_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_ykl211c_5_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ykl211c_5_result_1,trial_on_rich_globalmaxod_ykl211c_5_result_1_proc).
procedure(trial_on_rich_globalmaxod_ykl211c_5_result_1_proc).
has_representation(trial_on_rich_globalmaxod_ykl211c_5_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ykl211c_5_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_ykl211c_5_result,trial_on_rich_globalmaxod_ykl211c_5_result_2).
has_representation(trial_on_rich_globalmaxod_ykl211c_5_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_ykl211c_5_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ykl211c_5_result_2,trial_on_rich_globalmaxod_ykl211c_5_result_2_proc).
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has_representation(trial_on_rich_globalmaxod_ykl211c_5_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ykl211c_5_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_ykl211c_6,trial_on_rich_globalmaxod_ykl211c_6_design).
design(trial_on_rich_globalmaxod_ykl211c_6_design).
has_proposition(trial_on_rich_globalmaxod_ykl211c_6_design,trial_on_rich_globalmaxod_ykl211c_6_factor).
factor(trial_on_rich_globalmaxod_ykl211c_6_factor).
has_representation(trial_on_rich_globalmaxod_ykl211c_6_factor,'presence or absence of ykl211c').
has_input(trial_on_rich_globalmaxod_ykl211c_6,trial_on_rich_globalmaxod_ykl211c_6_data).
data(trial_on_rich_globalmaxod_ykl211c_6_data).
has_part(trial_on_rich_globalmaxod_ykl211c_6_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_ykl211c_6_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_ykl211c_6_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_ykl211c_6,'nature-loop1_expt001-plate002').
plate('nature-loop1_expt001-plate002').
has_proposition(trial_on_rich_globalmaxod_ykl211c_6,trial_on_rich_globalmaxod_ykl211c_6_result).
result(trial_on_rich_globalmaxod_ykl211c_6_result).
has_part(trial_on_rich_globalmaxod_ykl211c_6_result,trial_on_rich_globalmaxod_ykl211c_6_result_1).
has_representation(trial_on_rich_globalmaxod_ykl211c_6_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_ykl211c_6_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ykl211c_6_result_1,trial_on_rich_globalmaxod_ykl211c_6_result_1_proc).
procedure(trial_on_rich_globalmaxod_ykl211c_6_result_1_proc).
has_representation(trial_on_rich_globalmaxod_ykl211c_6_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ykl211c_6_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_ykl211c_6_result,trial_on_rich_globalmaxod_ykl211c_6_result_2).
has_representation(trial_on_rich_globalmaxod_ykl211c_6_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_ykl211c_6_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ykl211c_6_result_2,trial_on_rich_globalmaxod_ykl211c_6_result_2_proc).
procedure(trial_on_rich_globalmaxod_ykl211c_6_result_2_proc).
has_representation(trial_on_rich_globalmaxod_ykl211c_6_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ykl211c_6_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_ykl211c_7,trial_on_rich_globalmaxod_ykl211c_7_design).
design(trial_on_rich_globalmaxod_ykl211c_7_design).
has_proposition(trial_on_rich_globalmaxod_ykl211c_7_design,trial_on_rich_globalmaxod_ykl211c_7_factor).
factor(trial_on_rich_globalmaxod_ykl211c_7_factor).
has_representation(trial_on_rich_globalmaxod_ykl211c_7_factor,'presence or absence of ykl211c').
has_input(trial_on_rich_globalmaxod_ykl211c_7,trial_on_rich_globalmaxod_ykl211c_7_data).
data(trial_on_rich_globalmaxod_ykl211c_7_data).
has_part(trial_on_rich_globalmaxod_ykl211c_7_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_ykl211c_7_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_ykl211c_7_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_ykl211c_7,'nature-loop2_expt001-plate006').
plate('nature-loop2_expt001-plate006').
has_proposition(trial_on_rich_globalmaxod_ykl211c_7,trial_on_rich_globalmaxod_ykl211c_7_result).
result(trial_on_rich_globalmaxod_ykl211c_7_result).
has_part(trial_on_rich_globalmaxod_ykl211c_7_result,trial_on_rich_globalmaxod_ykl211c_7_result_1).
has_representation(trial_on_rich_globalmaxod_ykl211c_7_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_ykl211c_7_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ykl211c_7_result_1,trial_on_rich_globalmaxod_ykl211c_7_result_1_proc).
procedure(trial_on_rich_globalmaxod_ykl211c_7_result_1_proc).
has_representation(trial_on_rich_globalmaxod_ykl211c_7_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ykl211c_7_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_ykl211c_7_result,trial_on_rich_globalmaxod_ykl211c_7_result_2).
has_representation(trial_on_rich_globalmaxod_ykl211c_7_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_ykl211c_7_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ykl211c_7_result_2,trial_on_rich_globalmaxod_ykl211c_7_result_2_proc).
procedure(trial_on_rich_globalmaxod_ykl211c_7_result_2_proc).
has_representation(trial_on_rich_globalmaxod_ykl211c_7_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ykl211c_7_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_ykl211c_8,trial_on_rich_globalmaxod_ykl211c_8_design).
design(trial_on_rich_globalmaxod_ykl211c_8_design).
has_proposition(trial_on_rich_globalmaxod_ykl211c_8_design,trial_on_rich_globalmaxod_ykl211c_8_factor).
factor(trial_on_rich_globalmaxod_ykl211c_8_factor).
has_representation(trial_on_rich_globalmaxod_ykl211c_8_factor,'presence or absence of ykl211c').
has_input(trial_on_rich_globalmaxod_ykl211c_8,trial_on_rich_globalmaxod_ykl211c_8_data).
data(trial_on_rich_globalmaxod_ykl211c_8_data).
has_part(trial_on_rich_globalmaxod_ykl211c_8_data,'48 values for global max od of knockout on rich medium').
has_part(trial_on_rich_globalmaxod_ykl211c_8_data,'48 values for global max od of wild type on rich medium').
has_proposition(trial_on_rich_globalmaxod_ykl211c_8_data,'../data/').
link('../data/').
located_in(trial_on_rich_globalmaxod_ykl211c_8,'nature-loop3_expt006-plate006').
plate('nature-loop3_expt006-plate006').
has_proposition(trial_on_rich_globalmaxod_ykl211c_8,trial_on_rich_globalmaxod_ykl211c_8_result).
result(trial_on_rich_globalmaxod_ykl211c_8_result).
has_part(trial_on_rich_globalmaxod_ykl211c_8_result,trial_on_rich_globalmaxod_ykl211c_8_result_1).
has_representation(trial_on_rich_globalmaxod_ykl211c_8_result_1,'median of knockout on rich').
text_representation('median of knockout on rich').
has_proposition(trial_on_rich_globalmaxod_ykl211c_8_result_1,'results/global_max_od_pgrowth_kmedians.txt').
link('results/global_max_od_pgrowth_kmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ykl211c_8_result_1,trial_on_rich_globalmaxod_ykl211c_8_result_1_proc).
procedure(trial_on_rich_globalmaxod_ykl211c_8_result_1_proc).
has_representation(trial_on_rich_globalmaxod_ykl211c_8_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ykl211c_8_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_rich_globalmaxod_ykl211c_8_result,trial_on_rich_globalmaxod_ykl211c_8_result_2).
has_representation(trial_on_rich_globalmaxod_ykl211c_8_result_2,'median of wild type on rich').
text_representation('median of wild type on rich').
has_proposition(trial_on_rich_globalmaxod_ykl211c_8_result_2,'results/global_max_od_pgrowth_wmedians.txt').
link('results/global_max_od_pgrowth_wmedians.txt').
has_proposition(trial_on_rich_globalmaxod_ykl211c_8_result_2,trial_on_rich_globalmaxod_ykl211c_8_result_2_proc).
procedure(trial_on_rich_globalmaxod_ykl211c_8_result_2_proc).
has_representation(trial_on_rich_globalmaxod_ykl211c_8_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_rich_globalmaxod_ykl211c_8_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_rich_globalmaxod_ykl211c,trial_on_rich_globalmaxod_ykl211c_results).
result(trial_on_rich_globalmaxod_ykl211c_results).
has_part(trial_on_rich_globalmaxod_ykl211c_results,trial_on_rich_globalmaxod_ykl211c_results_1).
has_representation(trial_on_rich_globalmaxod_ykl211c_results_1,'median of knockout medians missing ykl211c').
text_representation('median of knockout medians missing ykl211c').
has_proposition(trial_on_rich_globalmaxod_ykl211c_results_1,trial_on_rich_globalmaxod_ykl211c_results_1_proc).
procedure(trial_on_rich_globalmaxod_ykl211c_results_1_proc).
has_proposition(trial_on_rich_globalmaxod_ykl211c_results_1_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_rich_globalmaxod_ykl211c_results,trial_on_rich_globalmaxod_ykl211c_results_2).
has_representation(trial_on_rich_globalmaxod_ykl211c_results_2,'median of wild type medians').
text_representation('median of wild type medians').
has_proposition(trial_on_rich_globalmaxod_ykl211c_results_2,trial_on_rich_globalmaxod_ykl211c_results_2_proc).
procedure(trial_on_rich_globalmaxod_ykl211c_results_2_proc).
has_proposition(trial_on_rich_globalmaxod_ykl211c_results_2_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_rich_globalmaxod_ykl211c_results,trial_on_rich_globalmaxod_ykl211c_results_3).
has_representation(trial_on_rich_globalmaxod_ykl211c_results_3,'difference between trial_on_rich_globalmaxod_ykl211c_results_1 and trial_on_rich_globalmaxod_ykl211c_results_2').
text_representation('difference between trial_on_rich_globalmaxod_ykl211c_results_1 and trial_on_rich_globalmaxod_ykl211c_results_2').
has_proposition(study_on_rich_globalmaxod,study_on_rich_globalmaxod_result).
result(study_on_rich_globalmaxod_result).
has_part(study_on_rich_globalmaxod_result,study_on_rich_globalmaxod_result_1).
has_representation(study_on_rich_globalmaxod_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_rich_globalmaxod_result_1,'results/wr_kr_global_max_od.csv').
link('results/wr_kr_global_max_od.csv').
has_proposition(study_on_rich_globalmaxod_result_1,study_on_rich_globalmaxod_result_1_proc).
procedure(study_on_rich_globalmaxod_result_1_proc).
has_proposition(study_on_rich_globalmaxod_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_rich_globalmaxod_result,study_on_rich_globalmaxod_result_2).
has_representation(study_on_rich_globalmaxod_result_2,'bar graph (histogram) plotting study_on_rich_globalmaxod_result_1').
text_representation('bar graph (histogram) plotting study_on_rich_globalmaxod_result_1').
has_proposition(study_on_rich_globalmaxod_result_2,'results/overlayed_global_max_od0.8.tiff').
link('results/overlayed_global_max_od0.8.tiff').
has_proposition(study_on_rich_globalmaxod_result_2,study_on_rich_globalmaxod_result_2_proc).
procedure(study_on_rich_globalmaxod_result_2_proc).
has_proposition(study_on_rich_globalmaxod_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_rich_globalmaxod,study_on_rich_globalmaxod_conclusion).
conclusion(study_on_rich_globalmaxod_conclusion).
has_representation(study_on_rich_globalmaxod_conclusion,'The knockouts reach a lower global_max_od in rich than the wild type').
text_representation('The knockouts reach a lower global_max_od in rich than the wild type').
has_proposition(study_on_rich_globalmaxod_conclusion,'obtain statistical mode of study_on_rich_globalmaxod_result_1').
procedure('obtain statistical mode of study_on_rich_globalmaxod_result_1').
text_representation('obtain statistical mode of study_on_rich_globalmaxod_result_1').

%%%%%%%%%%%%%%
has_part(data_reuse,study_on_minimal).
study(study_on_minimal).
has_representation(study_on_minimal,'study of the differences in the growth of knockouts and WT in minimal medium').
text_representation('study of the differences in the growth of knockouts and WT in minimal medium').

has_participant(study_on_minimal,minimal_medium).
has_participant(study_on_minimal,knockout(X)).

has_specified_input(study_on_rich,data_reuse_hset_hyp_1_2).
has_specified_input(study_on_rich,data_reuse_hset_hyp_2_2).


has_proposition(study_on_minimal,study_on_minimal_result).
result(study_on_minimal_result).
has_part(study_on_minimal_result,study_on_minimal_growthrate_result).
has_part(study_on_minimal_result,study_on_minimal_globalmaxod_result).



has_part(study_on_minimal,study_on_minimal_growthrate).
study(study_on_minimal_growthrate).
has_representation(study_on_minimal_growthrate,'study of the differences in the growth of knockouts and WT in minimal medium').
text_representation('study of differences in the growth rate of knockout and wildtype on minimal medium').
has_proposition(study_on_minimal_growthrate,study_on_minimal_growthrate_hset).
hypotheses_set(study_on_minimal_growthrate_hset).
has_proposition(study_on_minimal_growthrate_hset,study_on_minimal_growthrate_hset_hyp_1_1).
research_hypothesis(study_on_minimal_growthrate_hset_hyp_1_1).
has_representation(study_on_minimal_growthrate_hset_hyp_1_1,'There is a difference between knockout growth rate and wildtype growth rate in minimal medium').
text_representation('There is a difference between knockout growth rate and wildtype growth rate in minimal medium').
negative_hypothesis(study_on_minimal_growthrate_hset_hyp_1_2).
has_representation(study_on_minimal_growthrate_hset_hyp_1_2,'There is no difference between knockout growth rate and wildtype growth rate in minimal medium').
text_representation('There is no difference between knockout growth rate and wildtype growth rate in minimal medium').
	

has_part(study_on_minimal,study_on_minimal_globalmaxod).
study(study_on_minimal_globalmaxod).
has_representation(study_on_minimal_globalmaxod,'study of differences in the global max od of knockout and wildtype on minimal medium').
text_representation('study of differences in the global max od of knockout and wildtype on minimal medium').
has_proposition(study_on_minimal_globalmaxod,study_on_minimal_globalmaxod_hset).
hypotheses_set(study_on_minimal_globalmaxod_hset).
has_proposition(study_on_minimal_globalmaxod_hset,study_on_minimal_globalmaxod_hset_hyp_1_1).
research_hypothesis(study_on_minimal_globalmaxod_hset_hyp_1_1).
has_representation(study_on_minimal_globalmaxod_hset_hyp_1_1,'There is a difference between knockout global max od and wildtype global max od in minimal medium').
text_representation('There is a difference between knockout global max od and wildtype global max od in minimal medium').
negative_hypothesis(study_on_minimal_globalmaxod_hset_hyp_1_2).
has_representation(study_on_minimal_globalmaxod_hset_hyp_1_2,'There is no difference between knockout global max od and wildtype global max od in minimal medium').
text_representation('There is no difference between knockout global max od and wildtype global max od in minimal medium').

has_part(study_on_minimal_growthrate,trial_on_minimal_growthrate_yhr163w).
trial(trial_on_minimal_growthrate_yhr163w).
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strain(yhr163w).
has_proposition(trial_on_minimal_growthrate_yhr163w_1,trial_on_minimal_growthrate_yhr163w_1_design).
design(trial_on_minimal_growthrate_yhr163w_1_design).
has_proposition(trial_on_minimal_growthrate_yhr163w_1_design,trial_on_minimal_growthrate_yhr163w_1_factor).
factor(trial_on_minimal_growthrate_yhr163w_1_factor).
has_representation(trial_on_minimal_growthrate_yhr163w_1_factor,'presence or absence of yhr163w').
has_input(trial_on_minimal_growthrate_yhr163w_1,trial_on_minimal_growthrate_yhr163w_1_data).
data(trial_on_minimal_growthrate_yhr163w_1_data).
has_part(trial_on_minimal_growthrate_yhr163w_1_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_yhr163w_1_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_yhr163w_1_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_yhr163w_1,'jan07-trial1_expt001-plate009').
plate('jan07-trial1_expt001-plate009').
has_proposition(trial_on_minimal_growthrate_yhr163w_1,trial_on_minimal_growthrate_yhr163w_1_result).
result(trial_on_minimal_growthrate_yhr163w_1_result).
has_part(trial_on_minimal_growthrate_yhr163w_1_result,trial_on_minimal_growthrate_yhr163w_1_result_1).
has_representation(trial_on_minimal_growthrate_yhr163w_1_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_yhr163w_1_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_yhr163w_1_result_1,trial_on_minimal_growthrate_yhr163w_1_result_1_proc).
procedure(trial_on_minimal_growthrate_yhr163w_1_result_1_proc).
has_representation(trial_on_minimal_growthrate_yhr163w_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_yhr163w_1_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_yhr163w_1_result,trial_on_minimal_growthrate_yhr163w_1_result_2).
has_representation(trial_on_minimal_growthrate_yhr163w_1_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_yhr163w_1_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_yhr163w_1_result_2,trial_on_minimal_growthrate_yhr163w_1_result_2_proc).
procedure(trial_on_minimal_growthrate_yhr163w_1_result_2_proc).
has_representation(trial_on_minimal_growthrate_yhr163w_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_yhr163w_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_yhr163w_2,trial_on_minimal_growthrate_yhr163w_2_design).
design(trial_on_minimal_growthrate_yhr163w_2_design).
has_proposition(trial_on_minimal_growthrate_yhr163w_2_design,trial_on_minimal_growthrate_yhr163w_2_factor).
factor(trial_on_minimal_growthrate_yhr163w_2_factor).
has_representation(trial_on_minimal_growthrate_yhr163w_2_factor,'presence or absence of yhr163w').
has_input(trial_on_minimal_growthrate_yhr163w_2,trial_on_minimal_growthrate_yhr163w_2_data).
data(trial_on_minimal_growthrate_yhr163w_2_data).
has_part(trial_on_minimal_growthrate_yhr163w_2_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_yhr163w_2_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_yhr163w_2_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_yhr163w_2,'jan07-trial2_expt001-plate001').
plate('jan07-trial2_expt001-plate001').
has_proposition(trial_on_minimal_growthrate_yhr163w_2,trial_on_minimal_growthrate_yhr163w_2_result).
result(trial_on_minimal_growthrate_yhr163w_2_result).
has_part(trial_on_minimal_growthrate_yhr163w_2_result,trial_on_minimal_growthrate_yhr163w_2_result_1).
has_representation(trial_on_minimal_growthrate_yhr163w_2_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_yhr163w_2_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_yhr163w_2_result_1,trial_on_minimal_growthrate_yhr163w_2_result_1_proc).
procedure(trial_on_minimal_growthrate_yhr163w_2_result_1_proc).
has_representation(trial_on_minimal_growthrate_yhr163w_2_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_yhr163w_2_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_yhr163w_2_result,trial_on_minimal_growthrate_yhr163w_2_result_2).
has_representation(trial_on_minimal_growthrate_yhr163w_2_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_yhr163w_2_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_yhr163w_2_result_2,trial_on_minimal_growthrate_yhr163w_2_result_2_proc).
procedure(trial_on_minimal_growthrate_yhr163w_2_result_2_proc).
has_representation(trial_on_minimal_growthrate_yhr163w_2_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_yhr163w_2_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_yhr163w_3,trial_on_minimal_growthrate_yhr163w_3_design).
design(trial_on_minimal_growthrate_yhr163w_3_design).
has_proposition(trial_on_minimal_growthrate_yhr163w_3_design,trial_on_minimal_growthrate_yhr163w_3_factor).
factor(trial_on_minimal_growthrate_yhr163w_3_factor).
has_representation(trial_on_minimal_growthrate_yhr163w_3_factor,'presence or absence of yhr163w').
has_input(trial_on_minimal_growthrate_yhr163w_3,trial_on_minimal_growthrate_yhr163w_3_data).
data(trial_on_minimal_growthrate_yhr163w_3_data).
has_part(trial_on_minimal_growthrate_yhr163w_3_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_yhr163w_3_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_yhr163w_3_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_yhr163w_3,'mar07-trial2_expt001-plate001').
plate('mar07-trial2_expt001-plate001').
has_proposition(trial_on_minimal_growthrate_yhr163w_3,trial_on_minimal_growthrate_yhr163w_3_result).
result(trial_on_minimal_growthrate_yhr163w_3_result).
has_part(trial_on_minimal_growthrate_yhr163w_3_result,trial_on_minimal_growthrate_yhr163w_3_result_1).
has_representation(trial_on_minimal_growthrate_yhr163w_3_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_yhr163w_3_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_yhr163w_3_result_1,trial_on_minimal_growthrate_yhr163w_3_result_1_proc).
procedure(trial_on_minimal_growthrate_yhr163w_3_result_1_proc).
has_representation(trial_on_minimal_growthrate_yhr163w_3_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_yhr163w_3_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_yhr163w_3_result,trial_on_minimal_growthrate_yhr163w_3_result_2).
has_representation(trial_on_minimal_growthrate_yhr163w_3_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_yhr163w_3_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_yhr163w_3_result_2,trial_on_minimal_growthrate_yhr163w_3_result_2_proc).
procedure(trial_on_minimal_growthrate_yhr163w_3_result_2_proc).
has_representation(trial_on_minimal_growthrate_yhr163w_3_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_yhr163w_3_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_yhr163w_4,trial_on_minimal_growthrate_yhr163w_4_design).
design(trial_on_minimal_growthrate_yhr163w_4_design).
has_proposition(trial_on_minimal_growthrate_yhr163w_4_design,trial_on_minimal_growthrate_yhr163w_4_factor).
factor(trial_on_minimal_growthrate_yhr163w_4_factor).
has_representation(trial_on_minimal_growthrate_yhr163w_4_factor,'presence or absence of yhr163w').
has_input(trial_on_minimal_growthrate_yhr163w_4,trial_on_minimal_growthrate_yhr163w_4_data).
data(trial_on_minimal_growthrate_yhr163w_4_data).
has_part(trial_on_minimal_growthrate_yhr163w_4_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_yhr163w_4_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_yhr163w_4_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_yhr163w_4,'mar07-trial2_expt001-plate002').
plate('mar07-trial2_expt001-plate002').
has_proposition(trial_on_minimal_growthrate_yhr163w_4,trial_on_minimal_growthrate_yhr163w_4_result).
result(trial_on_minimal_growthrate_yhr163w_4_result).
has_part(trial_on_minimal_growthrate_yhr163w_4_result,trial_on_minimal_growthrate_yhr163w_4_result_1).
has_representation(trial_on_minimal_growthrate_yhr163w_4_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_yhr163w_4_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_yhr163w_4_result_1,trial_on_minimal_growthrate_yhr163w_4_result_1_proc).
procedure(trial_on_minimal_growthrate_yhr163w_4_result_1_proc).
has_representation(trial_on_minimal_growthrate_yhr163w_4_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_yhr163w_4_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_yhr163w_4_result,trial_on_minimal_growthrate_yhr163w_4_result_2).
has_representation(trial_on_minimal_growthrate_yhr163w_4_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_yhr163w_4_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_yhr163w_4_result_2,trial_on_minimal_growthrate_yhr163w_4_result_2_proc).
procedure(trial_on_minimal_growthrate_yhr163w_4_result_2_proc).
has_representation(trial_on_minimal_growthrate_yhr163w_4_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_yhr163w_4_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_yhr163w_5,trial_on_minimal_growthrate_yhr163w_5_design).
design(trial_on_minimal_growthrate_yhr163w_5_design).
has_proposition(trial_on_minimal_growthrate_yhr163w_5_design,trial_on_minimal_growthrate_yhr163w_5_factor).
factor(trial_on_minimal_growthrate_yhr163w_5_factor).
has_representation(trial_on_minimal_growthrate_yhr163w_5_factor,'presence or absence of yhr163w').
has_input(trial_on_minimal_growthrate_yhr163w_5,trial_on_minimal_growthrate_yhr163w_5_data).
data(trial_on_minimal_growthrate_yhr163w_5_data).
has_part(trial_on_minimal_growthrate_yhr163w_5_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_yhr163w_5_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_yhr163w_5_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_yhr163w_5,'mar07-trial2_expt001-plate003').
plate('mar07-trial2_expt001-plate003').
has_proposition(trial_on_minimal_growthrate_yhr163w_5,trial_on_minimal_growthrate_yhr163w_5_result).
result(trial_on_minimal_growthrate_yhr163w_5_result).
has_part(trial_on_minimal_growthrate_yhr163w_5_result,trial_on_minimal_growthrate_yhr163w_5_result_1).
has_representation(trial_on_minimal_growthrate_yhr163w_5_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_yhr163w_5_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_yhr163w_5_result_1,trial_on_minimal_growthrate_yhr163w_5_result_1_proc).
procedure(trial_on_minimal_growthrate_yhr163w_5_result_1_proc).
has_representation(trial_on_minimal_growthrate_yhr163w_5_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_yhr163w_5_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_yhr163w_5_result,trial_on_minimal_growthrate_yhr163w_5_result_2).
has_representation(trial_on_minimal_growthrate_yhr163w_5_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_yhr163w_5_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_yhr163w_5_result_2,trial_on_minimal_growthrate_yhr163w_5_result_2_proc).
procedure(trial_on_minimal_growthrate_yhr163w_5_result_2_proc).
has_representation(trial_on_minimal_growthrate_yhr163w_5_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_yhr163w_5_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_yhr163w_6,trial_on_minimal_growthrate_yhr163w_6_design).
design(trial_on_minimal_growthrate_yhr163w_6_design).
has_proposition(trial_on_minimal_growthrate_yhr163w_6_design,trial_on_minimal_growthrate_yhr163w_6_factor).
factor(trial_on_minimal_growthrate_yhr163w_6_factor).
has_representation(trial_on_minimal_growthrate_yhr163w_6_factor,'presence or absence of yhr163w').
has_input(trial_on_minimal_growthrate_yhr163w_6,trial_on_minimal_growthrate_yhr163w_6_data).
data(trial_on_minimal_growthrate_yhr163w_6_data).
has_part(trial_on_minimal_growthrate_yhr163w_6_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_yhr163w_6_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_yhr163w_6_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_yhr163w_6,'mar07-trial2_expt001-plate004').
plate('mar07-trial2_expt001-plate004').
has_proposition(trial_on_minimal_growthrate_yhr163w_6,trial_on_minimal_growthrate_yhr163w_6_result).
result(trial_on_minimal_growthrate_yhr163w_6_result).
has_part(trial_on_minimal_growthrate_yhr163w_6_result,trial_on_minimal_growthrate_yhr163w_6_result_1).
has_representation(trial_on_minimal_growthrate_yhr163w_6_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_yhr163w_6_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_yhr163w_6_result_1,trial_on_minimal_growthrate_yhr163w_6_result_1_proc).
procedure(trial_on_minimal_growthrate_yhr163w_6_result_1_proc).
has_representation(trial_on_minimal_growthrate_yhr163w_6_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_yhr163w_6_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_yhr163w_6_result,trial_on_minimal_growthrate_yhr163w_6_result_2).
has_representation(trial_on_minimal_growthrate_yhr163w_6_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_yhr163w_6_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_yhr163w_6_result_2,trial_on_minimal_growthrate_yhr163w_6_result_2_proc).
procedure(trial_on_minimal_growthrate_yhr163w_6_result_2_proc).
has_representation(trial_on_minimal_growthrate_yhr163w_6_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_yhr163w_6_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_yhr163w_7,trial_on_minimal_growthrate_yhr163w_7_design).
design(trial_on_minimal_growthrate_yhr163w_7_design).
has_proposition(trial_on_minimal_growthrate_yhr163w_7_design,trial_on_minimal_growthrate_yhr163w_7_factor).
factor(trial_on_minimal_growthrate_yhr163w_7_factor).
has_representation(trial_on_minimal_growthrate_yhr163w_7_factor,'presence or absence of yhr163w').
has_input(trial_on_minimal_growthrate_yhr163w_7,trial_on_minimal_growthrate_yhr163w_7_data).
data(trial_on_minimal_growthrate_yhr163w_7_data).
has_part(trial_on_minimal_growthrate_yhr163w_7_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_yhr163w_7_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_yhr163w_7_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_yhr163w_7,'mar07-trial2_expt001-plate005').
plate('mar07-trial2_expt001-plate005').
has_proposition(trial_on_minimal_growthrate_yhr163w_7,trial_on_minimal_growthrate_yhr163w_7_result).
result(trial_on_minimal_growthrate_yhr163w_7_result).
has_part(trial_on_minimal_growthrate_yhr163w_7_result,trial_on_minimal_growthrate_yhr163w_7_result_1).
has_representation(trial_on_minimal_growthrate_yhr163w_7_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_yhr163w_7_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_yhr163w_7_result_1,trial_on_minimal_growthrate_yhr163w_7_result_1_proc).
procedure(trial_on_minimal_growthrate_yhr163w_7_result_1_proc).
has_representation(trial_on_minimal_growthrate_yhr163w_7_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_yhr163w_7_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_yhr163w_7_result,trial_on_minimal_growthrate_yhr163w_7_result_2).
has_representation(trial_on_minimal_growthrate_yhr163w_7_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_yhr163w_7_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_yhr163w_7_result_2,trial_on_minimal_growthrate_yhr163w_7_result_2_proc).
procedure(trial_on_minimal_growthrate_yhr163w_7_result_2_proc).
has_representation(trial_on_minimal_growthrate_yhr163w_7_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_yhr163w_7_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_yhr163w_8,trial_on_minimal_growthrate_yhr163w_8_design).
design(trial_on_minimal_growthrate_yhr163w_8_design).
has_proposition(trial_on_minimal_growthrate_yhr163w_8_design,trial_on_minimal_growthrate_yhr163w_8_factor).
factor(trial_on_minimal_growthrate_yhr163w_8_factor).
has_representation(trial_on_minimal_growthrate_yhr163w_8_factor,'presence or absence of yhr163w').
has_input(trial_on_minimal_growthrate_yhr163w_8,trial_on_minimal_growthrate_yhr163w_8_data).
data(trial_on_minimal_growthrate_yhr163w_8_data).
has_part(trial_on_minimal_growthrate_yhr163w_8_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_yhr163w_8_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_yhr163w_8_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_yhr163w_8,'mar07-trial2_expt001-plate006').
plate('mar07-trial2_expt001-plate006').
has_proposition(trial_on_minimal_growthrate_yhr163w_8,trial_on_minimal_growthrate_yhr163w_8_result).
result(trial_on_minimal_growthrate_yhr163w_8_result).
has_part(trial_on_minimal_growthrate_yhr163w_8_result,trial_on_minimal_growthrate_yhr163w_8_result_1).
has_representation(trial_on_minimal_growthrate_yhr163w_8_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_yhr163w_8_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_yhr163w_8_result_1,trial_on_minimal_growthrate_yhr163w_8_result_1_proc).
procedure(trial_on_minimal_growthrate_yhr163w_8_result_1_proc).
has_representation(trial_on_minimal_growthrate_yhr163w_8_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_yhr163w_8_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_yhr163w_8_result,trial_on_minimal_growthrate_yhr163w_8_result_2).
has_representation(trial_on_minimal_growthrate_yhr163w_8_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_yhr163w_8_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_yhr163w_8_result_2,trial_on_minimal_growthrate_yhr163w_8_result_2_proc).
procedure(trial_on_minimal_growthrate_yhr163w_8_result_2_proc).
has_representation(trial_on_minimal_growthrate_yhr163w_8_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_yhr163w_8_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_yhr163w,trial_on_minimal_growthrate_yhr163w_results).
result(trial_on_minimal_growthrate_yhr163w_results).
has_part(trial_on_minimal_growthrate_yhr163w_results,trial_on_minimal_growthrate_yhr163w_results_1).
has_representation(trial_on_minimal_growthrate_yhr163w_results_1,'median of knockout medians missing yhr163w').
text_representation('median of knockout medians missing yhr163w').
has_proposition(trial_on_minimal_growthrate_yhr163w_results_1,trial_on_minimal_growthrate_yhr163w_results_1_proc).
procedure(trial_on_minimal_growthrate_yhr163w_results_1_proc).
has_proposition(trial_on_minimal_growthrate_yhr163w_results_1_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_minimal_growthrate_yhr163w_results,trial_on_minimal_growthrate_yhr163w_results_2).
has_representation(trial_on_minimal_growthrate_yhr163w_results_2,'median of wild type medians').
text_representation('median of wild type medians').
has_proposition(trial_on_minimal_growthrate_yhr163w_results_2,trial_on_minimal_growthrate_yhr163w_results_2_proc).
procedure(trial_on_minimal_growthrate_yhr163w_results_2_proc).
has_proposition(trial_on_minimal_growthrate_yhr163w_results_2_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_minimal_growthrate_yhr163w_results,trial_on_minimal_growthrate_yhr163w_results_3).
has_representation(trial_on_minimal_growthrate_yhr163w_results_3,'difference between trial_on_minimal_growthrate_yhr163w_results_1 and trial_on_minimal_growthrate_yhr163w_results_2').
text_representation('difference between trial_on_minimal_growthrate_yhr163w_results_1 and trial_on_minimal_growthrate_yhr163w_results_2').
has_proposition(study_on_minimal_growthrate,study_on_minimal_growthrate_result).
result(study_on_minimal_growthrate_result).
has_part(study_on_minimal_growthrate_result,study_on_minimal_growthrate_result_1).
has_representation(study_on_minimal_growthrate_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_minimal_growthrate_result_1,'results/wm_km_growth_rate.csv').
link('results/wm_km_growth_rate.csv').
has_proposition(study_on_minimal_growthrate_result_1,study_on_minimal_growthrate_result_1_proc).
procedure(study_on_minimal_growthrate_result_1_proc).
has_proposition(study_on_minimal_growthrate_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_minimal_growthrate_result,study_on_minimal_growthrate_result_2).
has_representation(study_on_minimal_growthrate_result_2,'bar graph (histogram) plotting study_on_minimal_growthrate_result_1').
text_representation('bar graph (histogram) plotting study_on_minimal_growthrate_result_1').
has_proposition(study_on_minimal_growthrate_result_2,'results/km_wm_growth_rate1.tiff').
link('results/km_wm_growth_rate1.tiff').
has_proposition(study_on_minimal_growthrate_result_2,'results/km_wm_growth_rate2.tiff').
link('results/km_wm_growth_rate2.tiff').
has_proposition(study_on_minimal_growthrate_result_2,'results/overlayed_growth_rate.tiff').
link('results/overlayed_growth_rate.tiff').
has_proposition(study_on_minimal_growthrate_result_2,study_on_minimal_growthrate_result_2_proc).
procedure(study_on_minimal_growthrate_result_2_proc).
has_proposition(study_on_minimal_growthrate_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_minimal_growthrate,study_on_minimal_growthrate_conclusion).
conclusion(study_on_minimal_growthrate_conclusion).
has_representation(study_on_minimal_growthrate_conclusion,'The knockouts had on average a higher growth rate in minimal than the wild type').
text_representation('The knockouts had on average a higher growth rate in minimal than the wild type').
has_proposition(study_on_minimal_growthrate_conclusion,'obtain statistical mode of study_on_minimal_growthrate_result_1').
procedure('obtain statistical mode of study_on_minimal_growthrate_result_1').
text_representation('obtain statistical mode of study_on_minimal_growthrate_result_1').
has_part(study_on_minimal_growthrate,trial_on_minimal_growthrate_ydr035w).
trial(trial_on_minimal_growthrate_ydr035w).
has_agent(trial_on_minimal_growthrate_ydr035w,ydr035w).
strain(ydr035w).
has_proposition(trial_on_minimal_growthrate_ydr035w_1,trial_on_minimal_growthrate_ydr035w_1_design).
design(trial_on_minimal_growthrate_ydr035w_1_design).
has_proposition(trial_on_minimal_growthrate_ydr035w_1_design,trial_on_minimal_growthrate_ydr035w_1_factor).
factor(trial_on_minimal_growthrate_ydr035w_1_factor).
has_representation(trial_on_minimal_growthrate_ydr035w_1_factor,'presence or absence of ydr035w').
has_input(trial_on_minimal_growthrate_ydr035w_1,trial_on_minimal_growthrate_ydr035w_1_data).
data(trial_on_minimal_growthrate_ydr035w_1_data).
has_part(trial_on_minimal_growthrate_ydr035w_1_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_ydr035w_1_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_ydr035w_1_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_ydr035w_1,'nature-loop3_expt001-plate006').
plate('nature-loop3_expt001-plate006').
has_proposition(trial_on_minimal_growthrate_ydr035w_1,trial_on_minimal_growthrate_ydr035w_1_result).
result(trial_on_minimal_growthrate_ydr035w_1_result).
has_part(trial_on_minimal_growthrate_ydr035w_1_result,trial_on_minimal_growthrate_ydr035w_1_result_1).
has_representation(trial_on_minimal_growthrate_ydr035w_1_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_ydr035w_1_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_ydr035w_1_result_1,trial_on_minimal_growthrate_ydr035w_1_result_1_proc).
procedure(trial_on_minimal_growthrate_ydr035w_1_result_1_proc).
has_representation(trial_on_minimal_growthrate_ydr035w_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ydr035w_1_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_ydr035w_1_result,trial_on_minimal_growthrate_ydr035w_1_result_2).
has_representation(trial_on_minimal_growthrate_ydr035w_1_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_ydr035w_1_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_ydr035w_1_result_2,trial_on_minimal_growthrate_ydr035w_1_result_2_proc).
procedure(trial_on_minimal_growthrate_ydr035w_1_result_2_proc).
has_representation(trial_on_minimal_growthrate_ydr035w_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ydr035w_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_ydr035w_2,trial_on_minimal_growthrate_ydr035w_2_design).
design(trial_on_minimal_growthrate_ydr035w_2_design).
has_proposition(trial_on_minimal_growthrate_ydr035w_2_design,trial_on_minimal_growthrate_ydr035w_2_factor).
factor(trial_on_minimal_growthrate_ydr035w_2_factor).
has_representation(trial_on_minimal_growthrate_ydr035w_2_factor,'presence or absence of ydr035w').
has_input(trial_on_minimal_growthrate_ydr035w_2,trial_on_minimal_growthrate_ydr035w_2_data).
data(trial_on_minimal_growthrate_ydr035w_2_data).
has_part(trial_on_minimal_growthrate_ydr035w_2_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_ydr035w_2_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_ydr035w_2_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_ydr035w_2,'nature-loop3_expt002-plate003').
plate('nature-loop3_expt002-plate003').
has_proposition(trial_on_minimal_growthrate_ydr035w_2,trial_on_minimal_growthrate_ydr035w_2_result).
result(trial_on_minimal_growthrate_ydr035w_2_result).
has_part(trial_on_minimal_growthrate_ydr035w_2_result,trial_on_minimal_growthrate_ydr035w_2_result_1).
has_representation(trial_on_minimal_growthrate_ydr035w_2_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_ydr035w_2_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_ydr035w_2_result_1,trial_on_minimal_growthrate_ydr035w_2_result_1_proc).
procedure(trial_on_minimal_growthrate_ydr035w_2_result_1_proc).
has_representation(trial_on_minimal_growthrate_ydr035w_2_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ydr035w_2_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_ydr035w_2_result,trial_on_minimal_growthrate_ydr035w_2_result_2).
has_representation(trial_on_minimal_growthrate_ydr035w_2_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_ydr035w_2_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_ydr035w_2_result_2,trial_on_minimal_growthrate_ydr035w_2_result_2_proc).
procedure(trial_on_minimal_growthrate_ydr035w_2_result_2_proc).
has_representation(trial_on_minimal_growthrate_ydr035w_2_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ydr035w_2_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_ydr035w_3,trial_on_minimal_growthrate_ydr035w_3_design).
design(trial_on_minimal_growthrate_ydr035w_3_design).
has_proposition(trial_on_minimal_growthrate_ydr035w_3_design,trial_on_minimal_growthrate_ydr035w_3_factor).
factor(trial_on_minimal_growthrate_ydr035w_3_factor).
has_representation(trial_on_minimal_growthrate_ydr035w_3_factor,'presence or absence of ydr035w').
has_input(trial_on_minimal_growthrate_ydr035w_3,trial_on_minimal_growthrate_ydr035w_3_data).
data(trial_on_minimal_growthrate_ydr035w_3_data).
has_part(trial_on_minimal_growthrate_ydr035w_3_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_ydr035w_3_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_ydr035w_3_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_ydr035w_3,'nature-loop3_expt003-plate006').
plate('nature-loop3_expt003-plate006').
has_proposition(trial_on_minimal_growthrate_ydr035w_3,trial_on_minimal_growthrate_ydr035w_3_result).
result(trial_on_minimal_growthrate_ydr035w_3_result).
has_part(trial_on_minimal_growthrate_ydr035w_3_result,trial_on_minimal_growthrate_ydr035w_3_result_1).
has_representation(trial_on_minimal_growthrate_ydr035w_3_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_ydr035w_3_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_ydr035w_3_result_1,trial_on_minimal_growthrate_ydr035w_3_result_1_proc).
procedure(trial_on_minimal_growthrate_ydr035w_3_result_1_proc).
has_representation(trial_on_minimal_growthrate_ydr035w_3_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ydr035w_3_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_ydr035w_3_result,trial_on_minimal_growthrate_ydr035w_3_result_2).
has_representation(trial_on_minimal_growthrate_ydr035w_3_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_ydr035w_3_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_ydr035w_3_result_2,trial_on_minimal_growthrate_ydr035w_3_result_2_proc).
procedure(trial_on_minimal_growthrate_ydr035w_3_result_2_proc).
has_representation(trial_on_minimal_growthrate_ydr035w_3_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ydr035w_3_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_ydr035w_4,trial_on_minimal_growthrate_ydr035w_4_design).
design(trial_on_minimal_growthrate_ydr035w_4_design).
has_proposition(trial_on_minimal_growthrate_ydr035w_4_design,trial_on_minimal_growthrate_ydr035w_4_factor).
factor(trial_on_minimal_growthrate_ydr035w_4_factor).
has_representation(trial_on_minimal_growthrate_ydr035w_4_factor,'presence or absence of ydr035w').
has_input(trial_on_minimal_growthrate_ydr035w_4,trial_on_minimal_growthrate_ydr035w_4_data).
data(trial_on_minimal_growthrate_ydr035w_4_data).
has_part(trial_on_minimal_growthrate_ydr035w_4_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_ydr035w_4_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_ydr035w_4_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_ydr035w_4,'nature-loop3_expt004-plate003').
plate('nature-loop3_expt004-plate003').
has_proposition(trial_on_minimal_growthrate_ydr035w_4,trial_on_minimal_growthrate_ydr035w_4_result).
result(trial_on_minimal_growthrate_ydr035w_4_result).
has_part(trial_on_minimal_growthrate_ydr035w_4_result,trial_on_minimal_growthrate_ydr035w_4_result_1).
has_representation(trial_on_minimal_growthrate_ydr035w_4_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_ydr035w_4_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_ydr035w_4_result_1,trial_on_minimal_growthrate_ydr035w_4_result_1_proc).
procedure(trial_on_minimal_growthrate_ydr035w_4_result_1_proc).
has_representation(trial_on_minimal_growthrate_ydr035w_4_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ydr035w_4_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_ydr035w_4_result,trial_on_minimal_growthrate_ydr035w_4_result_2).
has_representation(trial_on_minimal_growthrate_ydr035w_4_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_ydr035w_4_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_ydr035w_4_result_2,trial_on_minimal_growthrate_ydr035w_4_result_2_proc).
procedure(trial_on_minimal_growthrate_ydr035w_4_result_2_proc).
has_representation(trial_on_minimal_growthrate_ydr035w_4_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ydr035w_4_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_ydr035w_5,trial_on_minimal_growthrate_ydr035w_5_design).
design(trial_on_minimal_growthrate_ydr035w_5_design).
has_proposition(trial_on_minimal_growthrate_ydr035w_5_design,trial_on_minimal_growthrate_ydr035w_5_factor).
factor(trial_on_minimal_growthrate_ydr035w_5_factor).
has_representation(trial_on_minimal_growthrate_ydr035w_5_factor,'presence or absence of ydr035w').
has_input(trial_on_minimal_growthrate_ydr035w_5,trial_on_minimal_growthrate_ydr035w_5_data).
data(trial_on_minimal_growthrate_ydr035w_5_data).
has_part(trial_on_minimal_growthrate_ydr035w_5_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_ydr035w_5_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_ydr035w_5_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_ydr035w_5,'nature-loop3_expt005-plate003').
plate('nature-loop3_expt005-plate003').
has_proposition(trial_on_minimal_growthrate_ydr035w_5,trial_on_minimal_growthrate_ydr035w_5_result).
result(trial_on_minimal_growthrate_ydr035w_5_result).
has_part(trial_on_minimal_growthrate_ydr035w_5_result,trial_on_minimal_growthrate_ydr035w_5_result_1).
has_representation(trial_on_minimal_growthrate_ydr035w_5_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_ydr035w_5_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_ydr035w_5_result_1,trial_on_minimal_growthrate_ydr035w_5_result_1_proc).
procedure(trial_on_minimal_growthrate_ydr035w_5_result_1_proc).
has_representation(trial_on_minimal_growthrate_ydr035w_5_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ydr035w_5_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_ydr035w_5_result,trial_on_minimal_growthrate_ydr035w_5_result_2).
has_representation(trial_on_minimal_growthrate_ydr035w_5_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_ydr035w_5_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_ydr035w_5_result_2,trial_on_minimal_growthrate_ydr035w_5_result_2_proc).
procedure(trial_on_minimal_growthrate_ydr035w_5_result_2_proc).
has_representation(trial_on_minimal_growthrate_ydr035w_5_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ydr035w_5_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_ydr035w_6,trial_on_minimal_growthrate_ydr035w_6_design).
design(trial_on_minimal_growthrate_ydr035w_6_design).
has_proposition(trial_on_minimal_growthrate_ydr035w_6_design,trial_on_minimal_growthrate_ydr035w_6_factor).
factor(trial_on_minimal_growthrate_ydr035w_6_factor).
has_representation(trial_on_minimal_growthrate_ydr035w_6_factor,'presence or absence of ydr035w').
has_input(trial_on_minimal_growthrate_ydr035w_6,trial_on_minimal_growthrate_ydr035w_6_data).
data(trial_on_minimal_growthrate_ydr035w_6_data).
has_part(trial_on_minimal_growthrate_ydr035w_6_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_ydr035w_6_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_ydr035w_6_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_ydr035w_6,'nature-loop1_expt001-plate006').
plate('nature-loop1_expt001-plate006').
has_proposition(trial_on_minimal_growthrate_ydr035w_6,trial_on_minimal_growthrate_ydr035w_6_result).
result(trial_on_minimal_growthrate_ydr035w_6_result).
has_part(trial_on_minimal_growthrate_ydr035w_6_result,trial_on_minimal_growthrate_ydr035w_6_result_1).
has_representation(trial_on_minimal_growthrate_ydr035w_6_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_ydr035w_6_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_ydr035w_6_result_1,trial_on_minimal_growthrate_ydr035w_6_result_1_proc).
procedure(trial_on_minimal_growthrate_ydr035w_6_result_1_proc).
has_representation(trial_on_minimal_growthrate_ydr035w_6_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ydr035w_6_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_ydr035w_6_result,trial_on_minimal_growthrate_ydr035w_6_result_2).
has_representation(trial_on_minimal_growthrate_ydr035w_6_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_ydr035w_6_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_ydr035w_6_result_2,trial_on_minimal_growthrate_ydr035w_6_result_2_proc).
procedure(trial_on_minimal_growthrate_ydr035w_6_result_2_proc).
has_representation(trial_on_minimal_growthrate_ydr035w_6_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ydr035w_6_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_ydr035w_7,trial_on_minimal_growthrate_ydr035w_7_design).
design(trial_on_minimal_growthrate_ydr035w_7_design).
has_proposition(trial_on_minimal_growthrate_ydr035w_7_design,trial_on_minimal_growthrate_ydr035w_7_factor).
factor(trial_on_minimal_growthrate_ydr035w_7_factor).
has_representation(trial_on_minimal_growthrate_ydr035w_7_factor,'presence or absence of ydr035w').
has_input(trial_on_minimal_growthrate_ydr035w_7,trial_on_minimal_growthrate_ydr035w_7_data).
data(trial_on_minimal_growthrate_ydr035w_7_data).
has_part(trial_on_minimal_growthrate_ydr035w_7_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_ydr035w_7_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_ydr035w_7_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_ydr035w_7,'nature-loop2_expt001-plate002').
plate('nature-loop2_expt001-plate002').
has_proposition(trial_on_minimal_growthrate_ydr035w_7,trial_on_minimal_growthrate_ydr035w_7_result).
result(trial_on_minimal_growthrate_ydr035w_7_result).
has_part(trial_on_minimal_growthrate_ydr035w_7_result,trial_on_minimal_growthrate_ydr035w_7_result_1).
has_representation(trial_on_minimal_growthrate_ydr035w_7_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_ydr035w_7_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_ydr035w_7_result_1,trial_on_minimal_growthrate_ydr035w_7_result_1_proc).
procedure(trial_on_minimal_growthrate_ydr035w_7_result_1_proc).
has_representation(trial_on_minimal_growthrate_ydr035w_7_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ydr035w_7_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_ydr035w_7_result,trial_on_minimal_growthrate_ydr035w_7_result_2).
has_representation(trial_on_minimal_growthrate_ydr035w_7_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_ydr035w_7_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_ydr035w_7_result_2,trial_on_minimal_growthrate_ydr035w_7_result_2_proc).
procedure(trial_on_minimal_growthrate_ydr035w_7_result_2_proc).
has_representation(trial_on_minimal_growthrate_ydr035w_7_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ydr035w_7_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_ydr035w_8,trial_on_minimal_growthrate_ydr035w_8_design).
design(trial_on_minimal_growthrate_ydr035w_8_design).
has_proposition(trial_on_minimal_growthrate_ydr035w_8_design,trial_on_minimal_growthrate_ydr035w_8_factor).
factor(trial_on_minimal_growthrate_ydr035w_8_factor).
has_representation(trial_on_minimal_growthrate_ydr035w_8_factor,'presence or absence of ydr035w').
has_input(trial_on_minimal_growthrate_ydr035w_8,trial_on_minimal_growthrate_ydr035w_8_data).
data(trial_on_minimal_growthrate_ydr035w_8_data).
has_part(trial_on_minimal_growthrate_ydr035w_8_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_ydr035w_8_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_ydr035w_8_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_ydr035w_8,'nature-loop2_expt001-plate009').
plate('nature-loop2_expt001-plate009').
has_proposition(trial_on_minimal_growthrate_ydr035w_8,trial_on_minimal_growthrate_ydr035w_8_result).
result(trial_on_minimal_growthrate_ydr035w_8_result).
has_part(trial_on_minimal_growthrate_ydr035w_8_result,trial_on_minimal_growthrate_ydr035w_8_result_1).
has_representation(trial_on_minimal_growthrate_ydr035w_8_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_ydr035w_8_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_ydr035w_8_result_1,trial_on_minimal_growthrate_ydr035w_8_result_1_proc).
procedure(trial_on_minimal_growthrate_ydr035w_8_result_1_proc).
has_representation(trial_on_minimal_growthrate_ydr035w_8_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ydr035w_8_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_ydr035w_8_result,trial_on_minimal_growthrate_ydr035w_8_result_2).
has_representation(trial_on_minimal_growthrate_ydr035w_8_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_ydr035w_8_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_ydr035w_8_result_2,trial_on_minimal_growthrate_ydr035w_8_result_2_proc).
procedure(trial_on_minimal_growthrate_ydr035w_8_result_2_proc).
has_representation(trial_on_minimal_growthrate_ydr035w_8_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ydr035w_8_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_ydr035w_9,trial_on_minimal_growthrate_ydr035w_9_design).
design(trial_on_minimal_growthrate_ydr035w_9_design).
has_proposition(trial_on_minimal_growthrate_ydr035w_9_design,trial_on_minimal_growthrate_ydr035w_9_factor).
factor(trial_on_minimal_growthrate_ydr035w_9_factor).
has_representation(trial_on_minimal_growthrate_ydr035w_9_factor,'presence or absence of ydr035w').
has_input(trial_on_minimal_growthrate_ydr035w_9,trial_on_minimal_growthrate_ydr035w_9_data).
data(trial_on_minimal_growthrate_ydr035w_9_data).
has_part(trial_on_minimal_growthrate_ydr035w_9_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_ydr035w_9_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_ydr035w_9_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_ydr035w_9,'nature-loop3_expt006-plate002').
plate('nature-loop3_expt006-plate002').
has_proposition(trial_on_minimal_growthrate_ydr035w_9,trial_on_minimal_growthrate_ydr035w_9_result).
result(trial_on_minimal_growthrate_ydr035w_9_result).
has_part(trial_on_minimal_growthrate_ydr035w_9_result,trial_on_minimal_growthrate_ydr035w_9_result_1).
has_representation(trial_on_minimal_growthrate_ydr035w_9_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_ydr035w_9_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_ydr035w_9_result_1,trial_on_minimal_growthrate_ydr035w_9_result_1_proc).
procedure(trial_on_minimal_growthrate_ydr035w_9_result_1_proc).
has_representation(trial_on_minimal_growthrate_ydr035w_9_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ydr035w_9_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_ydr035w_9_result,trial_on_minimal_growthrate_ydr035w_9_result_2).
has_representation(trial_on_minimal_growthrate_ydr035w_9_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_ydr035w_9_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_ydr035w_9_result_2,trial_on_minimal_growthrate_ydr035w_9_result_2_proc).
procedure(trial_on_minimal_growthrate_ydr035w_9_result_2_proc).
has_representation(trial_on_minimal_growthrate_ydr035w_9_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ydr035w_9_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_ydr035w,trial_on_minimal_growthrate_ydr035w_results).
result(trial_on_minimal_growthrate_ydr035w_results).
has_part(trial_on_minimal_growthrate_ydr035w_results,trial_on_minimal_growthrate_ydr035w_results_1).
has_representation(trial_on_minimal_growthrate_ydr035w_results_1,'median of knockout medians missing ydr035w').
text_representation('median of knockout medians missing ydr035w').
has_proposition(trial_on_minimal_growthrate_ydr035w_results_1,trial_on_minimal_growthrate_ydr035w_results_1_proc).
procedure(trial_on_minimal_growthrate_ydr035w_results_1_proc).
has_proposition(trial_on_minimal_growthrate_ydr035w_results_1_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_minimal_growthrate_ydr035w_results,trial_on_minimal_growthrate_ydr035w_results_2).
has_representation(trial_on_minimal_growthrate_ydr035w_results_2,'median of wild type medians').
text_representation('median of wild type medians').
has_proposition(trial_on_minimal_growthrate_ydr035w_results_2,trial_on_minimal_growthrate_ydr035w_results_2_proc).
procedure(trial_on_minimal_growthrate_ydr035w_results_2_proc).
has_proposition(trial_on_minimal_growthrate_ydr035w_results_2_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_minimal_growthrate_ydr035w_results,trial_on_minimal_growthrate_ydr035w_results_3).
has_representation(trial_on_minimal_growthrate_ydr035w_results_3,'difference between trial_on_minimal_growthrate_ydr035w_results_1 and trial_on_minimal_growthrate_ydr035w_results_2').
text_representation('difference between trial_on_minimal_growthrate_ydr035w_results_1 and trial_on_minimal_growthrate_ydr035w_results_2').
has_proposition(study_on_minimal_growthrate,study_on_minimal_growthrate_result).
result(study_on_minimal_growthrate_result).
has_part(study_on_minimal_growthrate_result,study_on_minimal_growthrate_result_1).
has_representation(study_on_minimal_growthrate_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_minimal_growthrate_result_1,'results/wm_km_growth_rate.csv').
link('results/wm_km_growth_rate.csv').
has_proposition(study_on_minimal_growthrate_result_1,study_on_minimal_growthrate_result_1_proc).
procedure(study_on_minimal_growthrate_result_1_proc).
has_proposition(study_on_minimal_growthrate_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_minimal_growthrate_result,study_on_minimal_growthrate_result_2).
has_representation(study_on_minimal_growthrate_result_2,'bar graph (histogram) plotting study_on_minimal_growthrate_result_1').
text_representation('bar graph (histogram) plotting study_on_minimal_growthrate_result_1').
has_proposition(study_on_minimal_growthrate_result_2,'results/km_wm_growth_rate1.tiff').
link('results/km_wm_growth_rate1.tiff').
has_proposition(study_on_minimal_growthrate_result_2,'results/km_wm_growth_rate2.tiff').
link('results/km_wm_growth_rate2.tiff').
has_proposition(study_on_minimal_growthrate_result_2,'results/overlayed_growth_rate.tiff').
link('results/overlayed_growth_rate.tiff').
has_proposition(study_on_minimal_growthrate_result_2,study_on_minimal_growthrate_result_2_proc).
procedure(study_on_minimal_growthrate_result_2_proc).
has_proposition(study_on_minimal_growthrate_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_minimal_growthrate,study_on_minimal_growthrate_conclusion).
conclusion(study_on_minimal_growthrate_conclusion).
has_representation(study_on_minimal_growthrate_conclusion,'The knockouts had on average a higher growth rate in minimal than the wild type').
text_representation('The knockouts had on average a higher growth rate in minimal than the wild type').
has_proposition(study_on_minimal_growthrate_conclusion,'obtain statistical mode of study_on_minimal_growthrate_result_1').
procedure('obtain statistical mode of study_on_minimal_growthrate_result_1').
text_representation('obtain statistical mode of study_on_minimal_growthrate_result_1').
has_part(study_on_minimal_growthrate,trial_on_minimal_growthrate_ygr248w).
trial(trial_on_minimal_growthrate_ygr248w).
has_agent(trial_on_minimal_growthrate_ygr248w,ygr248w).
strain(ygr248w).
has_proposition(trial_on_minimal_growthrate_ygr248w_1,trial_on_minimal_growthrate_ygr248w_1_design).
design(trial_on_minimal_growthrate_ygr248w_1_design).
has_proposition(trial_on_minimal_growthrate_ygr248w_1_design,trial_on_minimal_growthrate_ygr248w_1_factor).
factor(trial_on_minimal_growthrate_ygr248w_1_factor).
has_representation(trial_on_minimal_growthrate_ygr248w_1_factor,'presence or absence of ygr248w').
has_input(trial_on_minimal_growthrate_ygr248w_1,trial_on_minimal_growthrate_ygr248w_1_data).
data(trial_on_minimal_growthrate_ygr248w_1_data).
has_part(trial_on_minimal_growthrate_ygr248w_1_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_ygr248w_1_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_ygr248w_1_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_ygr248w_1,'feb07-trial1_expt001-plate008').
plate('feb07-trial1_expt001-plate008').
has_proposition(trial_on_minimal_growthrate_ygr248w_1,trial_on_minimal_growthrate_ygr248w_1_result).
result(trial_on_minimal_growthrate_ygr248w_1_result).
has_part(trial_on_minimal_growthrate_ygr248w_1_result,trial_on_minimal_growthrate_ygr248w_1_result_1).
has_representation(trial_on_minimal_growthrate_ygr248w_1_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_ygr248w_1_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_ygr248w_1_result_1,trial_on_minimal_growthrate_ygr248w_1_result_1_proc).
procedure(trial_on_minimal_growthrate_ygr248w_1_result_1_proc).
has_representation(trial_on_minimal_growthrate_ygr248w_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ygr248w_1_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_ygr248w_1_result,trial_on_minimal_growthrate_ygr248w_1_result_2).
has_representation(trial_on_minimal_growthrate_ygr248w_1_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_ygr248w_1_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_ygr248w_1_result_2,trial_on_minimal_growthrate_ygr248w_1_result_2_proc).
procedure(trial_on_minimal_growthrate_ygr248w_1_result_2_proc).
has_representation(trial_on_minimal_growthrate_ygr248w_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ygr248w_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_ygr248w_2,trial_on_minimal_growthrate_ygr248w_2_design).
design(trial_on_minimal_growthrate_ygr248w_2_design).
has_proposition(trial_on_minimal_growthrate_ygr248w_2_design,trial_on_minimal_growthrate_ygr248w_2_factor).
factor(trial_on_minimal_growthrate_ygr248w_2_factor).
has_representation(trial_on_minimal_growthrate_ygr248w_2_factor,'presence or absence of ygr248w').
has_input(trial_on_minimal_growthrate_ygr248w_2,trial_on_minimal_growthrate_ygr248w_2_data).
data(trial_on_minimal_growthrate_ygr248w_2_data).
has_part(trial_on_minimal_growthrate_ygr248w_2_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_ygr248w_2_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_ygr248w_2_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_ygr248w_2,'feb07-trial1_expt001-plate009').
plate('feb07-trial1_expt001-plate009').
has_proposition(trial_on_minimal_growthrate_ygr248w_2,trial_on_minimal_growthrate_ygr248w_2_result).
result(trial_on_minimal_growthrate_ygr248w_2_result).
has_part(trial_on_minimal_growthrate_ygr248w_2_result,trial_on_minimal_growthrate_ygr248w_2_result_1).
has_representation(trial_on_minimal_growthrate_ygr248w_2_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_ygr248w_2_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_ygr248w_2_result_1,trial_on_minimal_growthrate_ygr248w_2_result_1_proc).
procedure(trial_on_minimal_growthrate_ygr248w_2_result_1_proc).
has_representation(trial_on_minimal_growthrate_ygr248w_2_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ygr248w_2_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_ygr248w_2_result,trial_on_minimal_growthrate_ygr248w_2_result_2).
has_representation(trial_on_minimal_growthrate_ygr248w_2_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_ygr248w_2_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_ygr248w_2_result_2,trial_on_minimal_growthrate_ygr248w_2_result_2_proc).
procedure(trial_on_minimal_growthrate_ygr248w_2_result_2_proc).
has_representation(trial_on_minimal_growthrate_ygr248w_2_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ygr248w_2_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_ygr248w,trial_on_minimal_growthrate_ygr248w_results).
result(trial_on_minimal_growthrate_ygr248w_results).
has_part(trial_on_minimal_growthrate_ygr248w_results,trial_on_minimal_growthrate_ygr248w_results_1).
has_representation(trial_on_minimal_growthrate_ygr248w_results_1,'median of knockout medians missing ygr248w').
text_representation('median of knockout medians missing ygr248w').
has_proposition(trial_on_minimal_growthrate_ygr248w_results_1,trial_on_minimal_growthrate_ygr248w_results_1_proc).
procedure(trial_on_minimal_growthrate_ygr248w_results_1_proc).
has_proposition(trial_on_minimal_growthrate_ygr248w_results_1_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_minimal_growthrate_ygr248w_results,trial_on_minimal_growthrate_ygr248w_results_2).
has_representation(trial_on_minimal_growthrate_ygr248w_results_2,'median of wild type medians').
text_representation('median of wild type medians').
has_proposition(trial_on_minimal_growthrate_ygr248w_results_2,trial_on_minimal_growthrate_ygr248w_results_2_proc).
procedure(trial_on_minimal_growthrate_ygr248w_results_2_proc).
has_proposition(trial_on_minimal_growthrate_ygr248w_results_2_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_minimal_growthrate_ygr248w_results,trial_on_minimal_growthrate_ygr248w_results_3).
has_representation(trial_on_minimal_growthrate_ygr248w_results_3,'difference between trial_on_minimal_growthrate_ygr248w_results_1 and trial_on_minimal_growthrate_ygr248w_results_2').
text_representation('difference between trial_on_minimal_growthrate_ygr248w_results_1 and trial_on_minimal_growthrate_ygr248w_results_2').
has_proposition(study_on_minimal_growthrate,study_on_minimal_growthrate_result).
result(study_on_minimal_growthrate_result).
has_part(study_on_minimal_growthrate_result,study_on_minimal_growthrate_result_1).
has_representation(study_on_minimal_growthrate_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_minimal_growthrate_result_1,'results/wm_km_growth_rate.csv').
link('results/wm_km_growth_rate.csv').
has_proposition(study_on_minimal_growthrate_result_1,study_on_minimal_growthrate_result_1_proc).
procedure(study_on_minimal_growthrate_result_1_proc).
has_proposition(study_on_minimal_growthrate_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_minimal_growthrate_result,study_on_minimal_growthrate_result_2).
has_representation(study_on_minimal_growthrate_result_2,'bar graph (histogram) plotting study_on_minimal_growthrate_result_1').
text_representation('bar graph (histogram) plotting study_on_minimal_growthrate_result_1').
has_proposition(study_on_minimal_growthrate_result_2,'results/km_wm_growth_rate1.tiff').
link('results/km_wm_growth_rate1.tiff').
has_proposition(study_on_minimal_growthrate_result_2,'results/km_wm_growth_rate2.tiff').
link('results/km_wm_growth_rate2.tiff').
has_proposition(study_on_minimal_growthrate_result_2,'results/overlayed_growth_rate.tiff').
link('results/overlayed_growth_rate.tiff').
has_proposition(study_on_minimal_growthrate_result_2,study_on_minimal_growthrate_result_2_proc).
procedure(study_on_minimal_growthrate_result_2_proc).
has_proposition(study_on_minimal_growthrate_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_minimal_growthrate,study_on_minimal_growthrate_conclusion).
conclusion(study_on_minimal_growthrate_conclusion).
has_representation(study_on_minimal_growthrate_conclusion,'The knockouts had on average a higher growth rate in minimal than the wild type').
text_representation('The knockouts had on average a higher growth rate in minimal than the wild type').
has_proposition(study_on_minimal_growthrate_conclusion,'obtain statistical mode of study_on_minimal_growthrate_result_1').
procedure('obtain statistical mode of study_on_minimal_growthrate_result_1').
text_representation('obtain statistical mode of study_on_minimal_growthrate_result_1').
has_part(study_on_minimal_growthrate,trial_on_minimal_growthrate_ymr020w).
trial(trial_on_minimal_growthrate_ymr020w).
has_agent(trial_on_minimal_growthrate_ymr020w,ymr020w).
strain(ymr020w).
has_proposition(trial_on_minimal_growthrate_ymr020w_1,trial_on_minimal_growthrate_ymr020w_1_design).
design(trial_on_minimal_growthrate_ymr020w_1_design).
has_proposition(trial_on_minimal_growthrate_ymr020w_1_design,trial_on_minimal_growthrate_ymr020w_1_factor).
factor(trial_on_minimal_growthrate_ymr020w_1_factor).
has_representation(trial_on_minimal_growthrate_ymr020w_1_factor,'presence or absence of ymr020w').
has_input(trial_on_minimal_growthrate_ymr020w_1,trial_on_minimal_growthrate_ymr020w_1_data).
data(trial_on_minimal_growthrate_ymr020w_1_data).
has_part(trial_on_minimal_growthrate_ymr020w_1_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_ymr020w_1_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_ymr020w_1_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_ymr020w_1,'mar07-trial4_expt1-plate003').
plate('mar07-trial4_expt1-plate003').
has_proposition(trial_on_minimal_growthrate_ymr020w_1,trial_on_minimal_growthrate_ymr020w_1_result).
result(trial_on_minimal_growthrate_ymr020w_1_result).
has_part(trial_on_minimal_growthrate_ymr020w_1_result,trial_on_minimal_growthrate_ymr020w_1_result_1).
has_representation(trial_on_minimal_growthrate_ymr020w_1_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_ymr020w_1_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_ymr020w_1_result_1,trial_on_minimal_growthrate_ymr020w_1_result_1_proc).
procedure(trial_on_minimal_growthrate_ymr020w_1_result_1_proc).
has_representation(trial_on_minimal_growthrate_ymr020w_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ymr020w_1_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_ymr020w_1_result,trial_on_minimal_growthrate_ymr020w_1_result_2).
has_representation(trial_on_minimal_growthrate_ymr020w_1_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_ymr020w_1_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_ymr020w_1_result_2,trial_on_minimal_growthrate_ymr020w_1_result_2_proc).
procedure(trial_on_minimal_growthrate_ymr020w_1_result_2_proc).
has_representation(trial_on_minimal_growthrate_ymr020w_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ymr020w_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_ymr020w_2,trial_on_minimal_growthrate_ymr020w_2_design).
design(trial_on_minimal_growthrate_ymr020w_2_design).
has_proposition(trial_on_minimal_growthrate_ymr020w_2_design,trial_on_minimal_growthrate_ymr020w_2_factor).
factor(trial_on_minimal_growthrate_ymr020w_2_factor).
has_representation(trial_on_minimal_growthrate_ymr020w_2_factor,'presence or absence of ymr020w').
has_input(trial_on_minimal_growthrate_ymr020w_2,trial_on_minimal_growthrate_ymr020w_2_data).
data(trial_on_minimal_growthrate_ymr020w_2_data).
has_part(trial_on_minimal_growthrate_ymr020w_2_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_ymr020w_2_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_ymr020w_2_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_ymr020w_2,'mar07-trial5_expt001-plate006').
plate('mar07-trial5_expt001-plate006').
has_proposition(trial_on_minimal_growthrate_ymr020w_2,trial_on_minimal_growthrate_ymr020w_2_result).
result(trial_on_minimal_growthrate_ymr020w_2_result).
has_part(trial_on_minimal_growthrate_ymr020w_2_result,trial_on_minimal_growthrate_ymr020w_2_result_1).
has_representation(trial_on_minimal_growthrate_ymr020w_2_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_ymr020w_2_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_ymr020w_2_result_1,trial_on_minimal_growthrate_ymr020w_2_result_1_proc).
procedure(trial_on_minimal_growthrate_ymr020w_2_result_1_proc).
has_representation(trial_on_minimal_growthrate_ymr020w_2_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ymr020w_2_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_ymr020w_2_result,trial_on_minimal_growthrate_ymr020w_2_result_2).
has_representation(trial_on_minimal_growthrate_ymr020w_2_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_ymr020w_2_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_ymr020w_2_result_2,trial_on_minimal_growthrate_ymr020w_2_result_2_proc).
procedure(trial_on_minimal_growthrate_ymr020w_2_result_2_proc).
has_representation(trial_on_minimal_growthrate_ymr020w_2_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ymr020w_2_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_ymr020w_3,trial_on_minimal_growthrate_ymr020w_3_design).
design(trial_on_minimal_growthrate_ymr020w_3_design).
has_proposition(trial_on_minimal_growthrate_ymr020w_3_design,trial_on_minimal_growthrate_ymr020w_3_factor).
factor(trial_on_minimal_growthrate_ymr020w_3_factor).
has_representation(trial_on_minimal_growthrate_ymr020w_3_factor,'presence or absence of ymr020w').
has_input(trial_on_minimal_growthrate_ymr020w_3,trial_on_minimal_growthrate_ymr020w_3_data).
data(trial_on_minimal_growthrate_ymr020w_3_data).
has_part(trial_on_minimal_growthrate_ymr020w_3_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_ymr020w_3_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_ymr020w_3_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_ymr020w_3,'mar07-trial7_expt001-plate004').
plate('mar07-trial7_expt001-plate004').
has_proposition(trial_on_minimal_growthrate_ymr020w_3,trial_on_minimal_growthrate_ymr020w_3_result).
result(trial_on_minimal_growthrate_ymr020w_3_result).
has_part(trial_on_minimal_growthrate_ymr020w_3_result,trial_on_minimal_growthrate_ymr020w_3_result_1).
has_representation(trial_on_minimal_growthrate_ymr020w_3_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_ymr020w_3_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_ymr020w_3_result_1,trial_on_minimal_growthrate_ymr020w_3_result_1_proc).
procedure(trial_on_minimal_growthrate_ymr020w_3_result_1_proc).
has_representation(trial_on_minimal_growthrate_ymr020w_3_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ymr020w_3_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_ymr020w_3_result,trial_on_minimal_growthrate_ymr020w_3_result_2).
has_representation(trial_on_minimal_growthrate_ymr020w_3_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_ymr020w_3_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_ymr020w_3_result_2,trial_on_minimal_growthrate_ymr020w_3_result_2_proc).
procedure(trial_on_minimal_growthrate_ymr020w_3_result_2_proc).
has_representation(trial_on_minimal_growthrate_ymr020w_3_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ymr020w_3_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_ymr020w_4,trial_on_minimal_growthrate_ymr020w_4_design).
design(trial_on_minimal_growthrate_ymr020w_4_design).
has_proposition(trial_on_minimal_growthrate_ymr020w_4_design,trial_on_minimal_growthrate_ymr020w_4_factor).
factor(trial_on_minimal_growthrate_ymr020w_4_factor).
has_representation(trial_on_minimal_growthrate_ymr020w_4_factor,'presence or absence of ymr020w').
has_input(trial_on_minimal_growthrate_ymr020w_4,trial_on_minimal_growthrate_ymr020w_4_data).
data(trial_on_minimal_growthrate_ymr020w_4_data).
has_part(trial_on_minimal_growthrate_ymr020w_4_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_ymr020w_4_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_ymr020w_4_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_ymr020w_4,'mar07-trial7_expt001-plate006').
plate('mar07-trial7_expt001-plate006').
has_proposition(trial_on_minimal_growthrate_ymr020w_4,trial_on_minimal_growthrate_ymr020w_4_result).
result(trial_on_minimal_growthrate_ymr020w_4_result).
has_part(trial_on_minimal_growthrate_ymr020w_4_result,trial_on_minimal_growthrate_ymr020w_4_result_1).
has_representation(trial_on_minimal_growthrate_ymr020w_4_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_ymr020w_4_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_ymr020w_4_result_1,trial_on_minimal_growthrate_ymr020w_4_result_1_proc).
procedure(trial_on_minimal_growthrate_ymr020w_4_result_1_proc).
has_representation(trial_on_minimal_growthrate_ymr020w_4_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ymr020w_4_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_ymr020w_4_result,trial_on_minimal_growthrate_ymr020w_4_result_2).
has_representation(trial_on_minimal_growthrate_ymr020w_4_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_ymr020w_4_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_ymr020w_4_result_2,trial_on_minimal_growthrate_ymr020w_4_result_2_proc).
procedure(trial_on_minimal_growthrate_ymr020w_4_result_2_proc).
has_representation(trial_on_minimal_growthrate_ymr020w_4_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ymr020w_4_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_ymr020w,trial_on_minimal_growthrate_ymr020w_results).
result(trial_on_minimal_growthrate_ymr020w_results).
has_part(trial_on_minimal_growthrate_ymr020w_results,trial_on_minimal_growthrate_ymr020w_results_1).
has_representation(trial_on_minimal_growthrate_ymr020w_results_1,'median of knockout medians missing ymr020w').
text_representation('median of knockout medians missing ymr020w').
has_proposition(trial_on_minimal_growthrate_ymr020w_results_1,trial_on_minimal_growthrate_ymr020w_results_1_proc).
procedure(trial_on_minimal_growthrate_ymr020w_results_1_proc).
has_proposition(trial_on_minimal_growthrate_ymr020w_results_1_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_minimal_growthrate_ymr020w_results,trial_on_minimal_growthrate_ymr020w_results_2).
has_representation(trial_on_minimal_growthrate_ymr020w_results_2,'median of wild type medians').
text_representation('median of wild type medians').
has_proposition(trial_on_minimal_growthrate_ymr020w_results_2,trial_on_minimal_growthrate_ymr020w_results_2_proc).
procedure(trial_on_minimal_growthrate_ymr020w_results_2_proc).
has_proposition(trial_on_minimal_growthrate_ymr020w_results_2_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_minimal_growthrate_ymr020w_results,trial_on_minimal_growthrate_ymr020w_results_3).
has_representation(trial_on_minimal_growthrate_ymr020w_results_3,'difference between trial_on_minimal_growthrate_ymr020w_results_1 and trial_on_minimal_growthrate_ymr020w_results_2').
text_representation('difference between trial_on_minimal_growthrate_ymr020w_results_1 and trial_on_minimal_growthrate_ymr020w_results_2').
has_proposition(study_on_minimal_growthrate,study_on_minimal_growthrate_result).
result(study_on_minimal_growthrate_result).
has_part(study_on_minimal_growthrate_result,study_on_minimal_growthrate_result_1).
has_representation(study_on_minimal_growthrate_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_minimal_growthrate_result_1,'results/wm_km_growth_rate.csv').
link('results/wm_km_growth_rate.csv').
has_proposition(study_on_minimal_growthrate_result_1,study_on_minimal_growthrate_result_1_proc).
procedure(study_on_minimal_growthrate_result_1_proc).
has_proposition(study_on_minimal_growthrate_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_minimal_growthrate_result,study_on_minimal_growthrate_result_2).
has_representation(study_on_minimal_growthrate_result_2,'bar graph (histogram) plotting study_on_minimal_growthrate_result_1').
text_representation('bar graph (histogram) plotting study_on_minimal_growthrate_result_1').
has_proposition(study_on_minimal_growthrate_result_2,'results/km_wm_growth_rate1.tiff').
link('results/km_wm_growth_rate1.tiff').
has_proposition(study_on_minimal_growthrate_result_2,'results/km_wm_growth_rate2.tiff').
link('results/km_wm_growth_rate2.tiff').
has_proposition(study_on_minimal_growthrate_result_2,'results/overlayed_growth_rate.tiff').
link('results/overlayed_growth_rate.tiff').
has_proposition(study_on_minimal_growthrate_result_2,study_on_minimal_growthrate_result_2_proc).
procedure(study_on_minimal_growthrate_result_2_proc).
has_proposition(study_on_minimal_growthrate_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_minimal_growthrate,study_on_minimal_growthrate_conclusion).
conclusion(study_on_minimal_growthrate_conclusion).
has_representation(study_on_minimal_growthrate_conclusion,'The knockouts had on average a higher growth rate in minimal than the wild type').
text_representation('The knockouts had on average a higher growth rate in minimal than the wild type').
has_proposition(study_on_minimal_growthrate_conclusion,'obtain statistical mode of study_on_minimal_growthrate_result_1').
procedure('obtain statistical mode of study_on_minimal_growthrate_result_1').
text_representation('obtain statistical mode of study_on_minimal_growthrate_result_1').
has_part(study_on_minimal_growthrate,trial_on_minimal_growthrate_ylr017w).
trial(trial_on_minimal_growthrate_ylr017w).
has_agent(trial_on_minimal_growthrate_ylr017w,ylr017w).
strain(ylr017w).
has_proposition(trial_on_minimal_growthrate_ylr017w_1,trial_on_minimal_growthrate_ylr017w_1_design).
design(trial_on_minimal_growthrate_ylr017w_1_design).
has_proposition(trial_on_minimal_growthrate_ylr017w_1_design,trial_on_minimal_growthrate_ylr017w_1_factor).
factor(trial_on_minimal_growthrate_ylr017w_1_factor).
has_representation(trial_on_minimal_growthrate_ylr017w_1_factor,'presence or absence of ylr017w').
has_input(trial_on_minimal_growthrate_ylr017w_1,trial_on_minimal_growthrate_ylr017w_1_data).
data(trial_on_minimal_growthrate_ylr017w_1_data).
has_part(trial_on_minimal_growthrate_ylr017w_1_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_ylr017w_1_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_ylr017w_1_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_ylr017w_1,'jan07-single_expt001-plate001').
plate('jan07-single_expt001-plate001').
has_proposition(trial_on_minimal_growthrate_ylr017w_1,trial_on_minimal_growthrate_ylr017w_1_result).
result(trial_on_minimal_growthrate_ylr017w_1_result).
has_part(trial_on_minimal_growthrate_ylr017w_1_result,trial_on_minimal_growthrate_ylr017w_1_result_1).
has_representation(trial_on_minimal_growthrate_ylr017w_1_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_ylr017w_1_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_ylr017w_1_result_1,trial_on_minimal_growthrate_ylr017w_1_result_1_proc).
procedure(trial_on_minimal_growthrate_ylr017w_1_result_1_proc).
has_representation(trial_on_minimal_growthrate_ylr017w_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ylr017w_1_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_ylr017w_1_result,trial_on_minimal_growthrate_ylr017w_1_result_2).
has_representation(trial_on_minimal_growthrate_ylr017w_1_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_ylr017w_1_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_ylr017w_1_result_2,trial_on_minimal_growthrate_ylr017w_1_result_2_proc).
procedure(trial_on_minimal_growthrate_ylr017w_1_result_2_proc).
has_representation(trial_on_minimal_growthrate_ylr017w_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ylr017w_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_ylr017w_2,trial_on_minimal_growthrate_ylr017w_2_design).
design(trial_on_minimal_growthrate_ylr017w_2_design).
has_proposition(trial_on_minimal_growthrate_ylr017w_2_design,trial_on_minimal_growthrate_ylr017w_2_factor).
factor(trial_on_minimal_growthrate_ylr017w_2_factor).
has_representation(trial_on_minimal_growthrate_ylr017w_2_factor,'presence or absence of ylr017w').
has_input(trial_on_minimal_growthrate_ylr017w_2,trial_on_minimal_growthrate_ylr017w_2_data).
data(trial_on_minimal_growthrate_ylr017w_2_data).
has_part(trial_on_minimal_growthrate_ylr017w_2_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_ylr017w_2_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_ylr017w_2_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_ylr017w_2,'jan07-single2_expt001-plate001').
plate('jan07-single2_expt001-plate001').
has_proposition(trial_on_minimal_growthrate_ylr017w_2,trial_on_minimal_growthrate_ylr017w_2_result).
result(trial_on_minimal_growthrate_ylr017w_2_result).
has_part(trial_on_minimal_growthrate_ylr017w_2_result,trial_on_minimal_growthrate_ylr017w_2_result_1).
has_representation(trial_on_minimal_growthrate_ylr017w_2_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_ylr017w_2_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_ylr017w_2_result_1,trial_on_minimal_growthrate_ylr017w_2_result_1_proc).
procedure(trial_on_minimal_growthrate_ylr017w_2_result_1_proc).
has_representation(trial_on_minimal_growthrate_ylr017w_2_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ylr017w_2_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_ylr017w_2_result,trial_on_minimal_growthrate_ylr017w_2_result_2).
has_representation(trial_on_minimal_growthrate_ylr017w_2_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_ylr017w_2_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_ylr017w_2_result_2,trial_on_minimal_growthrate_ylr017w_2_result_2_proc).
procedure(trial_on_minimal_growthrate_ylr017w_2_result_2_proc).
has_representation(trial_on_minimal_growthrate_ylr017w_2_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ylr017w_2_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_ylr017w_3,trial_on_minimal_growthrate_ylr017w_3_design).
design(trial_on_minimal_growthrate_ylr017w_3_design).
has_proposition(trial_on_minimal_growthrate_ylr017w_3_design,trial_on_minimal_growthrate_ylr017w_3_factor).
factor(trial_on_minimal_growthrate_ylr017w_3_factor).
has_representation(trial_on_minimal_growthrate_ylr017w_3_factor,'presence or absence of ylr017w').
has_input(trial_on_minimal_growthrate_ylr017w_3,trial_on_minimal_growthrate_ylr017w_3_data).
data(trial_on_minimal_growthrate_ylr017w_3_data).
has_part(trial_on_minimal_growthrate_ylr017w_3_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_ylr017w_3_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_ylr017w_3_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_ylr017w_3,'jan07-trial1_expt001-plate004').
plate('jan07-trial1_expt001-plate004').
has_proposition(trial_on_minimal_growthrate_ylr017w_3,trial_on_minimal_growthrate_ylr017w_3_result).
result(trial_on_minimal_growthrate_ylr017w_3_result).
has_part(trial_on_minimal_growthrate_ylr017w_3_result,trial_on_minimal_growthrate_ylr017w_3_result_1).
has_representation(trial_on_minimal_growthrate_ylr017w_3_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_ylr017w_3_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_ylr017w_3_result_1,trial_on_minimal_growthrate_ylr017w_3_result_1_proc).
procedure(trial_on_minimal_growthrate_ylr017w_3_result_1_proc).
has_representation(trial_on_minimal_growthrate_ylr017w_3_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ylr017w_3_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_ylr017w_3_result,trial_on_minimal_growthrate_ylr017w_3_result_2).
has_representation(trial_on_minimal_growthrate_ylr017w_3_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_ylr017w_3_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_ylr017w_3_result_2,trial_on_minimal_growthrate_ylr017w_3_result_2_proc).
procedure(trial_on_minimal_growthrate_ylr017w_3_result_2_proc).
has_representation(trial_on_minimal_growthrate_ylr017w_3_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ylr017w_3_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_ylr017w_4,trial_on_minimal_growthrate_ylr017w_4_design).
design(trial_on_minimal_growthrate_ylr017w_4_design).
has_proposition(trial_on_minimal_growthrate_ylr017w_4_design,trial_on_minimal_growthrate_ylr017w_4_factor).
factor(trial_on_minimal_growthrate_ylr017w_4_factor).
has_representation(trial_on_minimal_growthrate_ylr017w_4_factor,'presence or absence of ylr017w').
has_input(trial_on_minimal_growthrate_ylr017w_4,trial_on_minimal_growthrate_ylr017w_4_data).
data(trial_on_minimal_growthrate_ylr017w_4_data).
has_part(trial_on_minimal_growthrate_ylr017w_4_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_ylr017w_4_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_ylr017w_4_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_ylr017w_4,'jan07-trial1_expt001-plate006').
plate('jan07-trial1_expt001-plate006').
has_proposition(trial_on_minimal_growthrate_ylr017w_4,trial_on_minimal_growthrate_ylr017w_4_result).
result(trial_on_minimal_growthrate_ylr017w_4_result).
has_part(trial_on_minimal_growthrate_ylr017w_4_result,trial_on_minimal_growthrate_ylr017w_4_result_1).
has_representation(trial_on_minimal_growthrate_ylr017w_4_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_ylr017w_4_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_ylr017w_4_result_1,trial_on_minimal_growthrate_ylr017w_4_result_1_proc).
procedure(trial_on_minimal_growthrate_ylr017w_4_result_1_proc).
has_representation(trial_on_minimal_growthrate_ylr017w_4_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ylr017w_4_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_ylr017w_4_result,trial_on_minimal_growthrate_ylr017w_4_result_2).
has_representation(trial_on_minimal_growthrate_ylr017w_4_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_ylr017w_4_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_ylr017w_4_result_2,trial_on_minimal_growthrate_ylr017w_4_result_2_proc).
procedure(trial_on_minimal_growthrate_ylr017w_4_result_2_proc).
has_representation(trial_on_minimal_growthrate_ylr017w_4_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ylr017w_4_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_ylr017w_5,trial_on_minimal_growthrate_ylr017w_5_design).
design(trial_on_minimal_growthrate_ylr017w_5_design).
has_proposition(trial_on_minimal_growthrate_ylr017w_5_design,trial_on_minimal_growthrate_ylr017w_5_factor).
factor(trial_on_minimal_growthrate_ylr017w_5_factor).
has_representation(trial_on_minimal_growthrate_ylr017w_5_factor,'presence or absence of ylr017w').
has_input(trial_on_minimal_growthrate_ylr017w_5,trial_on_minimal_growthrate_ylr017w_5_data).
data(trial_on_minimal_growthrate_ylr017w_5_data).
has_part(trial_on_minimal_growthrate_ylr017w_5_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_ylr017w_5_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_ylr017w_5_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_ylr017w_5,'jan07-trial1_expt001-plate007').
plate('jan07-trial1_expt001-plate007').
has_proposition(trial_on_minimal_growthrate_ylr017w_5,trial_on_minimal_growthrate_ylr017w_5_result).
result(trial_on_minimal_growthrate_ylr017w_5_result).
has_part(trial_on_minimal_growthrate_ylr017w_5_result,trial_on_minimal_growthrate_ylr017w_5_result_1).
has_representation(trial_on_minimal_growthrate_ylr017w_5_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_ylr017w_5_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_ylr017w_5_result_1,trial_on_minimal_growthrate_ylr017w_5_result_1_proc).
procedure(trial_on_minimal_growthrate_ylr017w_5_result_1_proc).
has_representation(trial_on_minimal_growthrate_ylr017w_5_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ylr017w_5_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_ylr017w_5_result,trial_on_minimal_growthrate_ylr017w_5_result_2).
has_representation(trial_on_minimal_growthrate_ylr017w_5_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_ylr017w_5_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_ylr017w_5_result_2,trial_on_minimal_growthrate_ylr017w_5_result_2_proc).
procedure(trial_on_minimal_growthrate_ylr017w_5_result_2_proc).
has_representation(trial_on_minimal_growthrate_ylr017w_5_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ylr017w_5_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_ylr017w_6,trial_on_minimal_growthrate_ylr017w_6_design).
design(trial_on_minimal_growthrate_ylr017w_6_design).
has_proposition(trial_on_minimal_growthrate_ylr017w_6_design,trial_on_minimal_growthrate_ylr017w_6_factor).
factor(trial_on_minimal_growthrate_ylr017w_6_factor).
has_representation(trial_on_minimal_growthrate_ylr017w_6_factor,'presence or absence of ylr017w').
has_input(trial_on_minimal_growthrate_ylr017w_6,trial_on_minimal_growthrate_ylr017w_6_data).
data(trial_on_minimal_growthrate_ylr017w_6_data).
has_part(trial_on_minimal_growthrate_ylr017w_6_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_ylr017w_6_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_ylr017w_6_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_ylr017w_6,'jan07-trial1_expt001-plate011').
plate('jan07-trial1_expt001-plate011').
has_proposition(trial_on_minimal_growthrate_ylr017w_6,trial_on_minimal_growthrate_ylr017w_6_result).
result(trial_on_minimal_growthrate_ylr017w_6_result).
has_part(trial_on_minimal_growthrate_ylr017w_6_result,trial_on_minimal_growthrate_ylr017w_6_result_1).
has_representation(trial_on_minimal_growthrate_ylr017w_6_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_ylr017w_6_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_ylr017w_6_result_1,trial_on_minimal_growthrate_ylr017w_6_result_1_proc).
procedure(trial_on_minimal_growthrate_ylr017w_6_result_1_proc).
has_representation(trial_on_minimal_growthrate_ylr017w_6_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ylr017w_6_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_ylr017w_6_result,trial_on_minimal_growthrate_ylr017w_6_result_2).
has_representation(trial_on_minimal_growthrate_ylr017w_6_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_ylr017w_6_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_ylr017w_6_result_2,trial_on_minimal_growthrate_ylr017w_6_result_2_proc).
procedure(trial_on_minimal_growthrate_ylr017w_6_result_2_proc).
has_representation(trial_on_minimal_growthrate_ylr017w_6_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ylr017w_6_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_ylr017w_7,trial_on_minimal_growthrate_ylr017w_7_design).
design(trial_on_minimal_growthrate_ylr017w_7_design).
has_proposition(trial_on_minimal_growthrate_ylr017w_7_design,trial_on_minimal_growthrate_ylr017w_7_factor).
factor(trial_on_minimal_growthrate_ylr017w_7_factor).
has_representation(trial_on_minimal_growthrate_ylr017w_7_factor,'presence or absence of ylr017w').
has_input(trial_on_minimal_growthrate_ylr017w_7,trial_on_minimal_growthrate_ylr017w_7_data).
data(trial_on_minimal_growthrate_ylr017w_7_data).
has_part(trial_on_minimal_growthrate_ylr017w_7_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_ylr017w_7_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_ylr017w_7_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_ylr017w_7,'mar07-trial1_expt001-plate003').
plate('mar07-trial1_expt001-plate003').
has_proposition(trial_on_minimal_growthrate_ylr017w_7,trial_on_minimal_growthrate_ylr017w_7_result).
result(trial_on_minimal_growthrate_ylr017w_7_result).
has_part(trial_on_minimal_growthrate_ylr017w_7_result,trial_on_minimal_growthrate_ylr017w_7_result_1).
has_representation(trial_on_minimal_growthrate_ylr017w_7_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_ylr017w_7_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_ylr017w_7_result_1,trial_on_minimal_growthrate_ylr017w_7_result_1_proc).
procedure(trial_on_minimal_growthrate_ylr017w_7_result_1_proc).
has_representation(trial_on_minimal_growthrate_ylr017w_7_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ylr017w_7_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_ylr017w_7_result,trial_on_minimal_growthrate_ylr017w_7_result_2).
has_representation(trial_on_minimal_growthrate_ylr017w_7_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_ylr017w_7_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_ylr017w_7_result_2,trial_on_minimal_growthrate_ylr017w_7_result_2_proc).
procedure(trial_on_minimal_growthrate_ylr017w_7_result_2_proc).
has_representation(trial_on_minimal_growthrate_ylr017w_7_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ylr017w_7_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_ylr017w_8,trial_on_minimal_growthrate_ylr017w_8_design).
design(trial_on_minimal_growthrate_ylr017w_8_design).
has_proposition(trial_on_minimal_growthrate_ylr017w_8_design,trial_on_minimal_growthrate_ylr017w_8_factor).
factor(trial_on_minimal_growthrate_ylr017w_8_factor).
has_representation(trial_on_minimal_growthrate_ylr017w_8_factor,'presence or absence of ylr017w').
has_input(trial_on_minimal_growthrate_ylr017w_8,trial_on_minimal_growthrate_ylr017w_8_data).
data(trial_on_minimal_growthrate_ylr017w_8_data).
has_part(trial_on_minimal_growthrate_ylr017w_8_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_ylr017w_8_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_ylr017w_8_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_ylr017w_8,'mar07-trial1_expt001-plate004').
plate('mar07-trial1_expt001-plate004').
has_proposition(trial_on_minimal_growthrate_ylr017w_8,trial_on_minimal_growthrate_ylr017w_8_result).
result(trial_on_minimal_growthrate_ylr017w_8_result).
has_part(trial_on_minimal_growthrate_ylr017w_8_result,trial_on_minimal_growthrate_ylr017w_8_result_1).
has_representation(trial_on_minimal_growthrate_ylr017w_8_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_ylr017w_8_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_ylr017w_8_result_1,trial_on_minimal_growthrate_ylr017w_8_result_1_proc).
procedure(trial_on_minimal_growthrate_ylr017w_8_result_1_proc).
has_representation(trial_on_minimal_growthrate_ylr017w_8_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ylr017w_8_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_ylr017w_8_result,trial_on_minimal_growthrate_ylr017w_8_result_2).
has_representation(trial_on_minimal_growthrate_ylr017w_8_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_ylr017w_8_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_ylr017w_8_result_2,trial_on_minimal_growthrate_ylr017w_8_result_2_proc).
procedure(trial_on_minimal_growthrate_ylr017w_8_result_2_proc).
has_representation(trial_on_minimal_growthrate_ylr017w_8_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ylr017w_8_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_ylr017w,trial_on_minimal_growthrate_ylr017w_results).
result(trial_on_minimal_growthrate_ylr017w_results).
has_part(trial_on_minimal_growthrate_ylr017w_results,trial_on_minimal_growthrate_ylr017w_results_1).
has_representation(trial_on_minimal_growthrate_ylr017w_results_1,'median of knockout medians missing ylr017w').
text_representation('median of knockout medians missing ylr017w').
has_proposition(trial_on_minimal_growthrate_ylr017w_results_1,trial_on_minimal_growthrate_ylr017w_results_1_proc).
procedure(trial_on_minimal_growthrate_ylr017w_results_1_proc).
has_proposition(trial_on_minimal_growthrate_ylr017w_results_1_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_minimal_growthrate_ylr017w_results,trial_on_minimal_growthrate_ylr017w_results_2).
has_representation(trial_on_minimal_growthrate_ylr017w_results_2,'median of wild type medians').
text_representation('median of wild type medians').
has_proposition(trial_on_minimal_growthrate_ylr017w_results_2,trial_on_minimal_growthrate_ylr017w_results_2_proc).
procedure(trial_on_minimal_growthrate_ylr017w_results_2_proc).
has_proposition(trial_on_minimal_growthrate_ylr017w_results_2_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_minimal_growthrate_ylr017w_results,trial_on_minimal_growthrate_ylr017w_results_3).
has_representation(trial_on_minimal_growthrate_ylr017w_results_3,'difference between trial_on_minimal_growthrate_ylr017w_results_1 and trial_on_minimal_growthrate_ylr017w_results_2').
text_representation('difference between trial_on_minimal_growthrate_ylr017w_results_1 and trial_on_minimal_growthrate_ylr017w_results_2').
has_proposition(study_on_minimal_growthrate,study_on_minimal_growthrate_result).
result(study_on_minimal_growthrate_result).
has_part(study_on_minimal_growthrate_result,study_on_minimal_growthrate_result_1).
has_representation(study_on_minimal_growthrate_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_minimal_growthrate_result_1,'results/wm_km_growth_rate.csv').
link('results/wm_km_growth_rate.csv').
has_proposition(study_on_minimal_growthrate_result_1,study_on_minimal_growthrate_result_1_proc).
procedure(study_on_minimal_growthrate_result_1_proc).
has_proposition(study_on_minimal_growthrate_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_minimal_growthrate_result,study_on_minimal_growthrate_result_2).
has_representation(study_on_minimal_growthrate_result_2,'bar graph (histogram) plotting study_on_minimal_growthrate_result_1').
text_representation('bar graph (histogram) plotting study_on_minimal_growthrate_result_1').
has_proposition(study_on_minimal_growthrate_result_2,'results/km_wm_growth_rate1.tiff').
link('results/km_wm_growth_rate1.tiff').
has_proposition(study_on_minimal_growthrate_result_2,'results/km_wm_growth_rate2.tiff').
link('results/km_wm_growth_rate2.tiff').
has_proposition(study_on_minimal_growthrate_result_2,'results/overlayed_growth_rate.tiff').
link('results/overlayed_growth_rate.tiff').
has_proposition(study_on_minimal_growthrate_result_2,study_on_minimal_growthrate_result_2_proc).
procedure(study_on_minimal_growthrate_result_2_proc).
has_proposition(study_on_minimal_growthrate_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_minimal_growthrate,study_on_minimal_growthrate_conclusion).
conclusion(study_on_minimal_growthrate_conclusion).
has_representation(study_on_minimal_growthrate_conclusion,'The knockouts had on average a higher growth rate in minimal than the wild type').
text_representation('The knockouts had on average a higher growth rate in minimal than the wild type').
has_proposition(study_on_minimal_growthrate_conclusion,'obtain statistical mode of study_on_minimal_growthrate_result_1').
procedure('obtain statistical mode of study_on_minimal_growthrate_result_1').
text_representation('obtain statistical mode of study_on_minimal_growthrate_result_1').
has_part(study_on_minimal_growthrate,trial_on_minimal_growthrate_rsyd000004).
trial(trial_on_minimal_growthrate_rsyd000004).
has_agent(trial_on_minimal_growthrate_rsyd000004,rsyd000004).
strain(rsyd000004).
has_proposition(trial_on_minimal_growthrate_rsyd000004_1,trial_on_minimal_growthrate_rsyd000004_1_design).
design(trial_on_minimal_growthrate_rsyd000004_1_design).
has_proposition(trial_on_minimal_growthrate_rsyd000004_1_design,trial_on_minimal_growthrate_rsyd000004_1_factor).
factor(trial_on_minimal_growthrate_rsyd000004_1_factor).
has_representation(trial_on_minimal_growthrate_rsyd000004_1_factor,'presence or absence of rsyd000004').
has_input(trial_on_minimal_growthrate_rsyd000004_1,trial_on_minimal_growthrate_rsyd000004_1_data).
data(trial_on_minimal_growthrate_rsyd000004_1_data).
has_part(trial_on_minimal_growthrate_rsyd000004_1_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_rsyd000004_1_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_rsyd000004_1_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_rsyd000004_1,'trial-130407_expt001-plate001').
plate('trial-130407_expt001-plate001').
has_proposition(trial_on_minimal_growthrate_rsyd000004_1,trial_on_minimal_growthrate_rsyd000004_1_result).
result(trial_on_minimal_growthrate_rsyd000004_1_result).
has_part(trial_on_minimal_growthrate_rsyd000004_1_result,trial_on_minimal_growthrate_rsyd000004_1_result_1).
has_representation(trial_on_minimal_growthrate_rsyd000004_1_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_rsyd000004_1_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_rsyd000004_1_result_1,trial_on_minimal_growthrate_rsyd000004_1_result_1_proc).
procedure(trial_on_minimal_growthrate_rsyd000004_1_result_1_proc).
has_representation(trial_on_minimal_growthrate_rsyd000004_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_rsyd000004_1_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_rsyd000004_1_result,trial_on_minimal_growthrate_rsyd000004_1_result_2).
has_representation(trial_on_minimal_growthrate_rsyd000004_1_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_rsyd000004_1_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_rsyd000004_1_result_2,trial_on_minimal_growthrate_rsyd000004_1_result_2_proc).
procedure(trial_on_minimal_growthrate_rsyd000004_1_result_2_proc).
has_representation(trial_on_minimal_growthrate_rsyd000004_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_rsyd000004_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_rsyd000004_2,trial_on_minimal_growthrate_rsyd000004_2_design).
design(trial_on_minimal_growthrate_rsyd000004_2_design).
has_proposition(trial_on_minimal_growthrate_rsyd000004_2_design,trial_on_minimal_growthrate_rsyd000004_2_factor).
factor(trial_on_minimal_growthrate_rsyd000004_2_factor).
has_representation(trial_on_minimal_growthrate_rsyd000004_2_factor,'presence or absence of rsyd000004').
has_input(trial_on_minimal_growthrate_rsyd000004_2,trial_on_minimal_growthrate_rsyd000004_2_data).
data(trial_on_minimal_growthrate_rsyd000004_2_data).
has_part(trial_on_minimal_growthrate_rsyd000004_2_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_rsyd000004_2_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_rsyd000004_2_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_rsyd000004_2,'trial-130407_expt001-plate002').
plate('trial-130407_expt001-plate002').
has_proposition(trial_on_minimal_growthrate_rsyd000004_2,trial_on_minimal_growthrate_rsyd000004_2_result).
result(trial_on_minimal_growthrate_rsyd000004_2_result).
has_part(trial_on_minimal_growthrate_rsyd000004_2_result,trial_on_minimal_growthrate_rsyd000004_2_result_1).
has_representation(trial_on_minimal_growthrate_rsyd000004_2_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_rsyd000004_2_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_rsyd000004_2_result_1,trial_on_minimal_growthrate_rsyd000004_2_result_1_proc).
procedure(trial_on_minimal_growthrate_rsyd000004_2_result_1_proc).
has_representation(trial_on_minimal_growthrate_rsyd000004_2_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_rsyd000004_2_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_rsyd000004_2_result,trial_on_minimal_growthrate_rsyd000004_2_result_2).
has_representation(trial_on_minimal_growthrate_rsyd000004_2_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_rsyd000004_2_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_rsyd000004_2_result_2,trial_on_minimal_growthrate_rsyd000004_2_result_2_proc).
procedure(trial_on_minimal_growthrate_rsyd000004_2_result_2_proc).
has_representation(trial_on_minimal_growthrate_rsyd000004_2_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_rsyd000004_2_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_rsyd000004_3,trial_on_minimal_growthrate_rsyd000004_3_design).
design(trial_on_minimal_growthrate_rsyd000004_3_design).
has_proposition(trial_on_minimal_growthrate_rsyd000004_3_design,trial_on_minimal_growthrate_rsyd000004_3_factor).
factor(trial_on_minimal_growthrate_rsyd000004_3_factor).
has_representation(trial_on_minimal_growthrate_rsyd000004_3_factor,'presence or absence of rsyd000004').
has_input(trial_on_minimal_growthrate_rsyd000004_3,trial_on_minimal_growthrate_rsyd000004_3_data).
data(trial_on_minimal_growthrate_rsyd000004_3_data).
has_part(trial_on_minimal_growthrate_rsyd000004_3_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_rsyd000004_3_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_rsyd000004_3_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_rsyd000004_3,'trial-130407_expt001-plate003').
plate('trial-130407_expt001-plate003').
has_proposition(trial_on_minimal_growthrate_rsyd000004_3,trial_on_minimal_growthrate_rsyd000004_3_result).
result(trial_on_minimal_growthrate_rsyd000004_3_result).
has_part(trial_on_minimal_growthrate_rsyd000004_3_result,trial_on_minimal_growthrate_rsyd000004_3_result_1).
has_representation(trial_on_minimal_growthrate_rsyd000004_3_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_rsyd000004_3_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_rsyd000004_3_result_1,trial_on_minimal_growthrate_rsyd000004_3_result_1_proc).
procedure(trial_on_minimal_growthrate_rsyd000004_3_result_1_proc).
has_representation(trial_on_minimal_growthrate_rsyd000004_3_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_rsyd000004_3_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_rsyd000004_3_result,trial_on_minimal_growthrate_rsyd000004_3_result_2).
has_representation(trial_on_minimal_growthrate_rsyd000004_3_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_rsyd000004_3_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_rsyd000004_3_result_2,trial_on_minimal_growthrate_rsyd000004_3_result_2_proc).
procedure(trial_on_minimal_growthrate_rsyd000004_3_result_2_proc).
has_representation(trial_on_minimal_growthrate_rsyd000004_3_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_rsyd000004_3_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_rsyd000004,trial_on_minimal_growthrate_rsyd000004_results).
result(trial_on_minimal_growthrate_rsyd000004_results).
has_part(trial_on_minimal_growthrate_rsyd000004_results,trial_on_minimal_growthrate_rsyd000004_results_1).
has_representation(trial_on_minimal_growthrate_rsyd000004_results_1,'median of knockout medians missing rsyd000004').
text_representation('median of knockout medians missing rsyd000004').
has_proposition(trial_on_minimal_growthrate_rsyd000004_results_1,trial_on_minimal_growthrate_rsyd000004_results_1_proc).
procedure(trial_on_minimal_growthrate_rsyd000004_results_1_proc).
has_proposition(trial_on_minimal_growthrate_rsyd000004_results_1_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_minimal_growthrate_rsyd000004_results,trial_on_minimal_growthrate_rsyd000004_results_2).
has_representation(trial_on_minimal_growthrate_rsyd000004_results_2,'median of wild type medians').
text_representation('median of wild type medians').
has_proposition(trial_on_minimal_growthrate_rsyd000004_results_2,trial_on_minimal_growthrate_rsyd000004_results_2_proc).
procedure(trial_on_minimal_growthrate_rsyd000004_results_2_proc).
has_proposition(trial_on_minimal_growthrate_rsyd000004_results_2_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_minimal_growthrate_rsyd000004_results,trial_on_minimal_growthrate_rsyd000004_results_3).
has_representation(trial_on_minimal_growthrate_rsyd000004_results_3,'difference between trial_on_minimal_growthrate_rsyd000004_results_1 and trial_on_minimal_growthrate_rsyd000004_results_2').
text_representation('difference between trial_on_minimal_growthrate_rsyd000004_results_1 and trial_on_minimal_growthrate_rsyd000004_results_2').
has_proposition(study_on_minimal_growthrate,study_on_minimal_growthrate_result).
result(study_on_minimal_growthrate_result).
has_part(study_on_minimal_growthrate_result,study_on_minimal_growthrate_result_1).
has_representation(study_on_minimal_growthrate_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_minimal_growthrate_result_1,'results/wm_km_growth_rate.csv').
link('results/wm_km_growth_rate.csv').
has_proposition(study_on_minimal_growthrate_result_1,study_on_minimal_growthrate_result_1_proc).
procedure(study_on_minimal_growthrate_result_1_proc).
has_proposition(study_on_minimal_growthrate_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_minimal_growthrate_result,study_on_minimal_growthrate_result_2).
has_representation(study_on_minimal_growthrate_result_2,'bar graph (histogram) plotting study_on_minimal_growthrate_result_1').
text_representation('bar graph (histogram) plotting study_on_minimal_growthrate_result_1').
has_proposition(study_on_minimal_growthrate_result_2,'results/km_wm_growth_rate1.tiff').
link('results/km_wm_growth_rate1.tiff').
has_proposition(study_on_minimal_growthrate_result_2,'results/km_wm_growth_rate2.tiff').
link('results/km_wm_growth_rate2.tiff').
has_proposition(study_on_minimal_growthrate_result_2,'results/overlayed_growth_rate.tiff').
link('results/overlayed_growth_rate.tiff').
has_proposition(study_on_minimal_growthrate_result_2,study_on_minimal_growthrate_result_2_proc).
procedure(study_on_minimal_growthrate_result_2_proc).
has_proposition(study_on_minimal_growthrate_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_minimal_growthrate,study_on_minimal_growthrate_conclusion).
conclusion(study_on_minimal_growthrate_conclusion).
has_representation(study_on_minimal_growthrate_conclusion,'The knockouts had on average a higher growth rate in minimal than the wild type').
text_representation('The knockouts had on average a higher growth rate in minimal than the wild type').
has_proposition(study_on_minimal_growthrate_conclusion,'obtain statistical mode of study_on_minimal_growthrate_result_1').
procedure('obtain statistical mode of study_on_minimal_growthrate_result_1').
text_representation('obtain statistical mode of study_on_minimal_growthrate_result_1').
has_part(study_on_minimal_growthrate,trial_on_minimal_growthrate_rsyd000005).
trial(trial_on_minimal_growthrate_rsyd000005).
has_agent(trial_on_minimal_growthrate_rsyd000005,rsyd000005).
strain(rsyd000005).
has_proposition(trial_on_minimal_growthrate_rsyd000005_1,trial_on_minimal_growthrate_rsyd000005_1_design).
design(trial_on_minimal_growthrate_rsyd000005_1_design).
has_proposition(trial_on_minimal_growthrate_rsyd000005_1_design,trial_on_minimal_growthrate_rsyd000005_1_factor).
factor(trial_on_minimal_growthrate_rsyd000005_1_factor).
has_representation(trial_on_minimal_growthrate_rsyd000005_1_factor,'presence or absence of rsyd000005').
has_input(trial_on_minimal_growthrate_rsyd000005_1,trial_on_minimal_growthrate_rsyd000005_1_data).
data(trial_on_minimal_growthrate_rsyd000005_1_data).
has_part(trial_on_minimal_growthrate_rsyd000005_1_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_rsyd000005_1_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_rsyd000005_1_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_rsyd000005_1,'trial-130407_expt001-plate004').
plate('trial-130407_expt001-plate004').
has_proposition(trial_on_minimal_growthrate_rsyd000005_1,trial_on_minimal_growthrate_rsyd000005_1_result).
result(trial_on_minimal_growthrate_rsyd000005_1_result).
has_part(trial_on_minimal_growthrate_rsyd000005_1_result,trial_on_minimal_growthrate_rsyd000005_1_result_1).
has_representation(trial_on_minimal_growthrate_rsyd000005_1_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_rsyd000005_1_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_rsyd000005_1_result_1,trial_on_minimal_growthrate_rsyd000005_1_result_1_proc).
procedure(trial_on_minimal_growthrate_rsyd000005_1_result_1_proc).
has_representation(trial_on_minimal_growthrate_rsyd000005_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_rsyd000005_1_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_rsyd000005_1_result,trial_on_minimal_growthrate_rsyd000005_1_result_2).
has_representation(trial_on_minimal_growthrate_rsyd000005_1_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_rsyd000005_1_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_rsyd000005_1_result_2,trial_on_minimal_growthrate_rsyd000005_1_result_2_proc).
procedure(trial_on_minimal_growthrate_rsyd000005_1_result_2_proc).
has_representation(trial_on_minimal_growthrate_rsyd000005_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_rsyd000005_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_rsyd000005_2,trial_on_minimal_growthrate_rsyd000005_2_design).
design(trial_on_minimal_growthrate_rsyd000005_2_design).
has_proposition(trial_on_minimal_growthrate_rsyd000005_2_design,trial_on_minimal_growthrate_rsyd000005_2_factor).
factor(trial_on_minimal_growthrate_rsyd000005_2_factor).
has_representation(trial_on_minimal_growthrate_rsyd000005_2_factor,'presence or absence of rsyd000005').
has_input(trial_on_minimal_growthrate_rsyd000005_2,trial_on_minimal_growthrate_rsyd000005_2_data).
data(trial_on_minimal_growthrate_rsyd000005_2_data).
has_part(trial_on_minimal_growthrate_rsyd000005_2_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_rsyd000005_2_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_rsyd000005_2_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_rsyd000005_2,'trial-130407_expt001-plate005').
plate('trial-130407_expt001-plate005').
has_proposition(trial_on_minimal_growthrate_rsyd000005_2,trial_on_minimal_growthrate_rsyd000005_2_result).
result(trial_on_minimal_growthrate_rsyd000005_2_result).
has_part(trial_on_minimal_growthrate_rsyd000005_2_result,trial_on_minimal_growthrate_rsyd000005_2_result_1).
has_representation(trial_on_minimal_growthrate_rsyd000005_2_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_rsyd000005_2_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_rsyd000005_2_result_1,trial_on_minimal_growthrate_rsyd000005_2_result_1_proc).
procedure(trial_on_minimal_growthrate_rsyd000005_2_result_1_proc).
has_representation(trial_on_minimal_growthrate_rsyd000005_2_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_rsyd000005_2_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_rsyd000005_2_result,trial_on_minimal_growthrate_rsyd000005_2_result_2).
has_representation(trial_on_minimal_growthrate_rsyd000005_2_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_rsyd000005_2_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_rsyd000005_2_result_2,trial_on_minimal_growthrate_rsyd000005_2_result_2_proc).
procedure(trial_on_minimal_growthrate_rsyd000005_2_result_2_proc).
has_representation(trial_on_minimal_growthrate_rsyd000005_2_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_rsyd000005_2_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_rsyd000005_3,trial_on_minimal_growthrate_rsyd000005_3_design).
design(trial_on_minimal_growthrate_rsyd000005_3_design).
has_proposition(trial_on_minimal_growthrate_rsyd000005_3_design,trial_on_minimal_growthrate_rsyd000005_3_factor).
factor(trial_on_minimal_growthrate_rsyd000005_3_factor).
has_representation(trial_on_minimal_growthrate_rsyd000005_3_factor,'presence or absence of rsyd000005').
has_input(trial_on_minimal_growthrate_rsyd000005_3,trial_on_minimal_growthrate_rsyd000005_3_data).
data(trial_on_minimal_growthrate_rsyd000005_3_data).
has_part(trial_on_minimal_growthrate_rsyd000005_3_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_rsyd000005_3_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_rsyd000005_3_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_rsyd000005_3,'trial-130407_expt001-plate006').
plate('trial-130407_expt001-plate006').
has_proposition(trial_on_minimal_growthrate_rsyd000005_3,trial_on_minimal_growthrate_rsyd000005_3_result).
result(trial_on_minimal_growthrate_rsyd000005_3_result).
has_part(trial_on_minimal_growthrate_rsyd000005_3_result,trial_on_minimal_growthrate_rsyd000005_3_result_1).
has_representation(trial_on_minimal_growthrate_rsyd000005_3_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_rsyd000005_3_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_rsyd000005_3_result_1,trial_on_minimal_growthrate_rsyd000005_3_result_1_proc).
procedure(trial_on_minimal_growthrate_rsyd000005_3_result_1_proc).
has_representation(trial_on_minimal_growthrate_rsyd000005_3_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_rsyd000005_3_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_rsyd000005_3_result,trial_on_minimal_growthrate_rsyd000005_3_result_2).
has_representation(trial_on_minimal_growthrate_rsyd000005_3_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_rsyd000005_3_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_rsyd000005_3_result_2,trial_on_minimal_growthrate_rsyd000005_3_result_2_proc).
procedure(trial_on_minimal_growthrate_rsyd000005_3_result_2_proc).
has_representation(trial_on_minimal_growthrate_rsyd000005_3_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_rsyd000005_3_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_rsyd000005,trial_on_minimal_growthrate_rsyd000005_results).
result(trial_on_minimal_growthrate_rsyd000005_results).
has_part(trial_on_minimal_growthrate_rsyd000005_results,trial_on_minimal_growthrate_rsyd000005_results_1).
has_representation(trial_on_minimal_growthrate_rsyd000005_results_1,'median of knockout medians missing rsyd000005').
text_representation('median of knockout medians missing rsyd000005').
has_proposition(trial_on_minimal_growthrate_rsyd000005_results_1,trial_on_minimal_growthrate_rsyd000005_results_1_proc).
procedure(trial_on_minimal_growthrate_rsyd000005_results_1_proc).
has_proposition(trial_on_minimal_growthrate_rsyd000005_results_1_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_minimal_growthrate_rsyd000005_results,trial_on_minimal_growthrate_rsyd000005_results_2).
has_representation(trial_on_minimal_growthrate_rsyd000005_results_2,'median of wild type medians').
text_representation('median of wild type medians').
has_proposition(trial_on_minimal_growthrate_rsyd000005_results_2,trial_on_minimal_growthrate_rsyd000005_results_2_proc).
procedure(trial_on_minimal_growthrate_rsyd000005_results_2_proc).
has_proposition(trial_on_minimal_growthrate_rsyd000005_results_2_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_minimal_growthrate_rsyd000005_results,trial_on_minimal_growthrate_rsyd000005_results_3).
has_representation(trial_on_minimal_growthrate_rsyd000005_results_3,'difference between trial_on_minimal_growthrate_rsyd000005_results_1 and trial_on_minimal_growthrate_rsyd000005_results_2').
text_representation('difference between trial_on_minimal_growthrate_rsyd000005_results_1 and trial_on_minimal_growthrate_rsyd000005_results_2').
has_proposition(study_on_minimal_growthrate,study_on_minimal_growthrate_result).
result(study_on_minimal_growthrate_result).
has_part(study_on_minimal_growthrate_result,study_on_minimal_growthrate_result_1).
has_representation(study_on_minimal_growthrate_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_minimal_growthrate_result_1,'results/wm_km_growth_rate.csv').
link('results/wm_km_growth_rate.csv').
has_proposition(study_on_minimal_growthrate_result_1,study_on_minimal_growthrate_result_1_proc).
procedure(study_on_minimal_growthrate_result_1_proc).
has_proposition(study_on_minimal_growthrate_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_minimal_growthrate_result,study_on_minimal_growthrate_result_2).
has_representation(study_on_minimal_growthrate_result_2,'bar graph (histogram) plotting study_on_minimal_growthrate_result_1').
text_representation('bar graph (histogram) plotting study_on_minimal_growthrate_result_1').
has_proposition(study_on_minimal_growthrate_result_2,'results/km_wm_growth_rate1.tiff').
link('results/km_wm_growth_rate1.tiff').
has_proposition(study_on_minimal_growthrate_result_2,'results/km_wm_growth_rate2.tiff').
link('results/km_wm_growth_rate2.tiff').
has_proposition(study_on_minimal_growthrate_result_2,'results/overlayed_growth_rate.tiff').
link('results/overlayed_growth_rate.tiff').
has_proposition(study_on_minimal_growthrate_result_2,study_on_minimal_growthrate_result_2_proc).
procedure(study_on_minimal_growthrate_result_2_proc).
has_proposition(study_on_minimal_growthrate_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_minimal_growthrate,study_on_minimal_growthrate_conclusion).
conclusion(study_on_minimal_growthrate_conclusion).
has_representation(study_on_minimal_growthrate_conclusion,'The knockouts had on average a higher growth rate in minimal than the wild type').
text_representation('The knockouts had on average a higher growth rate in minimal than the wild type').
has_proposition(study_on_minimal_growthrate_conclusion,'obtain statistical mode of study_on_minimal_growthrate_result_1').
procedure('obtain statistical mode of study_on_minimal_growthrate_result_1').
text_representation('obtain statistical mode of study_on_minimal_growthrate_result_1').
has_part(study_on_minimal_growthrate,trial_on_minimal_growthrate_ynr073c).
trial(trial_on_minimal_growthrate_ynr073c).
has_agent(trial_on_minimal_growthrate_ynr073c,ynr073c).
strain(ynr073c).
has_proposition(trial_on_minimal_growthrate_ynr073c_1,trial_on_minimal_growthrate_ynr073c_1_design).
design(trial_on_minimal_growthrate_ynr073c_1_design).
has_proposition(trial_on_minimal_growthrate_ynr073c_1_design,trial_on_minimal_growthrate_ynr073c_1_factor).
factor(trial_on_minimal_growthrate_ynr073c_1_factor).
has_representation(trial_on_minimal_growthrate_ynr073c_1_factor,'presence or absence of ynr073c').
has_input(trial_on_minimal_growthrate_ynr073c_1,trial_on_minimal_growthrate_ynr073c_1_data).
data(trial_on_minimal_growthrate_ynr073c_1_data).
has_part(trial_on_minimal_growthrate_ynr073c_1_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_ynr073c_1_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_ynr073c_1_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_ynr073c_1,'mar07-trial3_expt001-plate001').
plate('mar07-trial3_expt001-plate001').
has_proposition(trial_on_minimal_growthrate_ynr073c_1,trial_on_minimal_growthrate_ynr073c_1_result).
result(trial_on_minimal_growthrate_ynr073c_1_result).
has_part(trial_on_minimal_growthrate_ynr073c_1_result,trial_on_minimal_growthrate_ynr073c_1_result_1).
has_representation(trial_on_minimal_growthrate_ynr073c_1_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_ynr073c_1_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_ynr073c_1_result_1,trial_on_minimal_growthrate_ynr073c_1_result_1_proc).
procedure(trial_on_minimal_growthrate_ynr073c_1_result_1_proc).
has_representation(trial_on_minimal_growthrate_ynr073c_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ynr073c_1_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_ynr073c_1_result,trial_on_minimal_growthrate_ynr073c_1_result_2).
has_representation(trial_on_minimal_growthrate_ynr073c_1_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_ynr073c_1_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_ynr073c_1_result_2,trial_on_minimal_growthrate_ynr073c_1_result_2_proc).
procedure(trial_on_minimal_growthrate_ynr073c_1_result_2_proc).
has_representation(trial_on_minimal_growthrate_ynr073c_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ynr073c_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_ynr073c_2,trial_on_minimal_growthrate_ynr073c_2_design).
design(trial_on_minimal_growthrate_ynr073c_2_design).
has_proposition(trial_on_minimal_growthrate_ynr073c_2_design,trial_on_minimal_growthrate_ynr073c_2_factor).
factor(trial_on_minimal_growthrate_ynr073c_2_factor).
has_representation(trial_on_minimal_growthrate_ynr073c_2_factor,'presence or absence of ynr073c').
has_input(trial_on_minimal_growthrate_ynr073c_2,trial_on_minimal_growthrate_ynr073c_2_data).
data(trial_on_minimal_growthrate_ynr073c_2_data).
has_part(trial_on_minimal_growthrate_ynr073c_2_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_ynr073c_2_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_ynr073c_2_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_ynr073c_2,'mar07-trial3_expt001-plate002').
plate('mar07-trial3_expt001-plate002').
has_proposition(trial_on_minimal_growthrate_ynr073c_2,trial_on_minimal_growthrate_ynr073c_2_result).
result(trial_on_minimal_growthrate_ynr073c_2_result).
has_part(trial_on_minimal_growthrate_ynr073c_2_result,trial_on_minimal_growthrate_ynr073c_2_result_1).
has_representation(trial_on_minimal_growthrate_ynr073c_2_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_ynr073c_2_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_ynr073c_2_result_1,trial_on_minimal_growthrate_ynr073c_2_result_1_proc).
procedure(trial_on_minimal_growthrate_ynr073c_2_result_1_proc).
has_representation(trial_on_minimal_growthrate_ynr073c_2_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ynr073c_2_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_ynr073c_2_result,trial_on_minimal_growthrate_ynr073c_2_result_2).
has_representation(trial_on_minimal_growthrate_ynr073c_2_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_ynr073c_2_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_ynr073c_2_result_2,trial_on_minimal_growthrate_ynr073c_2_result_2_proc).
procedure(trial_on_minimal_growthrate_ynr073c_2_result_2_proc).
has_representation(trial_on_minimal_growthrate_ynr073c_2_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ynr073c_2_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_ynr073c_3,trial_on_minimal_growthrate_ynr073c_3_design).
design(trial_on_minimal_growthrate_ynr073c_3_design).
has_proposition(trial_on_minimal_growthrate_ynr073c_3_design,trial_on_minimal_growthrate_ynr073c_3_factor).
factor(trial_on_minimal_growthrate_ynr073c_3_factor).
has_representation(trial_on_minimal_growthrate_ynr073c_3_factor,'presence or absence of ynr073c').
has_input(trial_on_minimal_growthrate_ynr073c_3,trial_on_minimal_growthrate_ynr073c_3_data).
data(trial_on_minimal_growthrate_ynr073c_3_data).
has_part(trial_on_minimal_growthrate_ynr073c_3_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_ynr073c_3_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_ynr073c_3_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_ynr073c_3,'mar07-trial3_expt001-plate005').
plate('mar07-trial3_expt001-plate005').
has_proposition(trial_on_minimal_growthrate_ynr073c_3,trial_on_minimal_growthrate_ynr073c_3_result).
result(trial_on_minimal_growthrate_ynr073c_3_result).
has_part(trial_on_minimal_growthrate_ynr073c_3_result,trial_on_minimal_growthrate_ynr073c_3_result_1).
has_representation(trial_on_minimal_growthrate_ynr073c_3_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_ynr073c_3_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_ynr073c_3_result_1,trial_on_minimal_growthrate_ynr073c_3_result_1_proc).
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has_representation(trial_on_minimal_growthrate_ynr073c_3_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ynr073c_3_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_ynr073c_3_result,trial_on_minimal_growthrate_ynr073c_3_result_2).
has_representation(trial_on_minimal_growthrate_ynr073c_3_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_ynr073c_3_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_ynr073c_3_result_2,trial_on_minimal_growthrate_ynr073c_3_result_2_proc).
procedure(trial_on_minimal_growthrate_ynr073c_3_result_2_proc).
has_representation(trial_on_minimal_growthrate_ynr073c_3_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ynr073c_3_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_ynr073c_4,trial_on_minimal_growthrate_ynr073c_4_design).
design(trial_on_minimal_growthrate_ynr073c_4_design).
has_proposition(trial_on_minimal_growthrate_ynr073c_4_design,trial_on_minimal_growthrate_ynr073c_4_factor).
factor(trial_on_minimal_growthrate_ynr073c_4_factor).
has_representation(trial_on_minimal_growthrate_ynr073c_4_factor,'presence or absence of ynr073c').
has_input(trial_on_minimal_growthrate_ynr073c_4,trial_on_minimal_growthrate_ynr073c_4_data).
data(trial_on_minimal_growthrate_ynr073c_4_data).
has_part(trial_on_minimal_growthrate_ynr073c_4_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_ynr073c_4_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_ynr073c_4_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_ynr073c_4,'mar07-trial3_expt001-plate006').
plate('mar07-trial3_expt001-plate006').
has_proposition(trial_on_minimal_growthrate_ynr073c_4,trial_on_minimal_growthrate_ynr073c_4_result).
result(trial_on_minimal_growthrate_ynr073c_4_result).
has_part(trial_on_minimal_growthrate_ynr073c_4_result,trial_on_minimal_growthrate_ynr073c_4_result_1).
has_representation(trial_on_minimal_growthrate_ynr073c_4_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_ynr073c_4_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_ynr073c_4_result_1,trial_on_minimal_growthrate_ynr073c_4_result_1_proc).
procedure(trial_on_minimal_growthrate_ynr073c_4_result_1_proc).
has_representation(trial_on_minimal_growthrate_ynr073c_4_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ynr073c_4_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_ynr073c_4_result,trial_on_minimal_growthrate_ynr073c_4_result_2).
has_representation(trial_on_minimal_growthrate_ynr073c_4_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_ynr073c_4_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_ynr073c_4_result_2,trial_on_minimal_growthrate_ynr073c_4_result_2_proc).
procedure(trial_on_minimal_growthrate_ynr073c_4_result_2_proc).
has_representation(trial_on_minimal_growthrate_ynr073c_4_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ynr073c_4_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_ynr073c_5,trial_on_minimal_growthrate_ynr073c_5_design).
design(trial_on_minimal_growthrate_ynr073c_5_design).
has_proposition(trial_on_minimal_growthrate_ynr073c_5_design,trial_on_minimal_growthrate_ynr073c_5_factor).
factor(trial_on_minimal_growthrate_ynr073c_5_factor).
has_representation(trial_on_minimal_growthrate_ynr073c_5_factor,'presence or absence of ynr073c').
has_input(trial_on_minimal_growthrate_ynr073c_5,trial_on_minimal_growthrate_ynr073c_5_data).
data(trial_on_minimal_growthrate_ynr073c_5_data).
has_part(trial_on_minimal_growthrate_ynr073c_5_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_ynr073c_5_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_ynr073c_5_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_ynr073c_5,'mar07-trial5_expt001-plate004').
plate('mar07-trial5_expt001-plate004').
has_proposition(trial_on_minimal_growthrate_ynr073c_5,trial_on_minimal_growthrate_ynr073c_5_result).
result(trial_on_minimal_growthrate_ynr073c_5_result).
has_part(trial_on_minimal_growthrate_ynr073c_5_result,trial_on_minimal_growthrate_ynr073c_5_result_1).
has_representation(trial_on_minimal_growthrate_ynr073c_5_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_ynr073c_5_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_ynr073c_5_result_1,trial_on_minimal_growthrate_ynr073c_5_result_1_proc).
procedure(trial_on_minimal_growthrate_ynr073c_5_result_1_proc).
has_representation(trial_on_minimal_growthrate_ynr073c_5_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ynr073c_5_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_ynr073c_5_result,trial_on_minimal_growthrate_ynr073c_5_result_2).
has_representation(trial_on_minimal_growthrate_ynr073c_5_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_ynr073c_5_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_ynr073c_5_result_2,trial_on_minimal_growthrate_ynr073c_5_result_2_proc).
procedure(trial_on_minimal_growthrate_ynr073c_5_result_2_proc).
has_representation(trial_on_minimal_growthrate_ynr073c_5_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ynr073c_5_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_ynr073c_6,trial_on_minimal_growthrate_ynr073c_6_design).
design(trial_on_minimal_growthrate_ynr073c_6_design).
has_proposition(trial_on_minimal_growthrate_ynr073c_6_design,trial_on_minimal_growthrate_ynr073c_6_factor).
factor(trial_on_minimal_growthrate_ynr073c_6_factor).
has_representation(trial_on_minimal_growthrate_ynr073c_6_factor,'presence or absence of ynr073c').
has_input(trial_on_minimal_growthrate_ynr073c_6,trial_on_minimal_growthrate_ynr073c_6_data).
data(trial_on_minimal_growthrate_ynr073c_6_data).
has_part(trial_on_minimal_growthrate_ynr073c_6_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_ynr073c_6_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_ynr073c_6_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_ynr073c_6,'mar07-trial7_expt001-plate002').
plate('mar07-trial7_expt001-plate002').
has_proposition(trial_on_minimal_growthrate_ynr073c_6,trial_on_minimal_growthrate_ynr073c_6_result).
result(trial_on_minimal_growthrate_ynr073c_6_result).
has_part(trial_on_minimal_growthrate_ynr073c_6_result,trial_on_minimal_growthrate_ynr073c_6_result_1).
has_representation(trial_on_minimal_growthrate_ynr073c_6_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_ynr073c_6_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_ynr073c_6_result_1,trial_on_minimal_growthrate_ynr073c_6_result_1_proc).
procedure(trial_on_minimal_growthrate_ynr073c_6_result_1_proc).
has_representation(trial_on_minimal_growthrate_ynr073c_6_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ynr073c_6_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_ynr073c_6_result,trial_on_minimal_growthrate_ynr073c_6_result_2).
has_representation(trial_on_minimal_growthrate_ynr073c_6_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_ynr073c_6_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_ynr073c_6_result_2,trial_on_minimal_growthrate_ynr073c_6_result_2_proc).
procedure(trial_on_minimal_growthrate_ynr073c_6_result_2_proc).
has_representation(trial_on_minimal_growthrate_ynr073c_6_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ynr073c_6_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_ynr073c,trial_on_minimal_growthrate_ynr073c_results).
result(trial_on_minimal_growthrate_ynr073c_results).
has_part(trial_on_minimal_growthrate_ynr073c_results,trial_on_minimal_growthrate_ynr073c_results_1).
has_representation(trial_on_minimal_growthrate_ynr073c_results_1,'median of knockout medians missing ynr073c').
text_representation('median of knockout medians missing ynr073c').
has_proposition(trial_on_minimal_growthrate_ynr073c_results_1,trial_on_minimal_growthrate_ynr073c_results_1_proc).
procedure(trial_on_minimal_growthrate_ynr073c_results_1_proc).
has_proposition(trial_on_minimal_growthrate_ynr073c_results_1_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_minimal_growthrate_ynr073c_results,trial_on_minimal_growthrate_ynr073c_results_2).
has_representation(trial_on_minimal_growthrate_ynr073c_results_2,'median of wild type medians').
text_representation('median of wild type medians').
has_proposition(trial_on_minimal_growthrate_ynr073c_results_2,trial_on_minimal_growthrate_ynr073c_results_2_proc).
procedure(trial_on_minimal_growthrate_ynr073c_results_2_proc).
has_proposition(trial_on_minimal_growthrate_ynr073c_results_2_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_minimal_growthrate_ynr073c_results,trial_on_minimal_growthrate_ynr073c_results_3).
has_representation(trial_on_minimal_growthrate_ynr073c_results_3,'difference between trial_on_minimal_growthrate_ynr073c_results_1 and trial_on_minimal_growthrate_ynr073c_results_2').
text_representation('difference between trial_on_minimal_growthrate_ynr073c_results_1 and trial_on_minimal_growthrate_ynr073c_results_2').
has_proposition(study_on_minimal_growthrate,study_on_minimal_growthrate_result).
result(study_on_minimal_growthrate_result).
has_part(study_on_minimal_growthrate_result,study_on_minimal_growthrate_result_1).
has_representation(study_on_minimal_growthrate_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_minimal_growthrate_result_1,'results/wm_km_growth_rate.csv').
link('results/wm_km_growth_rate.csv').
has_proposition(study_on_minimal_growthrate_result_1,study_on_minimal_growthrate_result_1_proc).
procedure(study_on_minimal_growthrate_result_1_proc).
has_proposition(study_on_minimal_growthrate_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_minimal_growthrate_result,study_on_minimal_growthrate_result_2).
has_representation(study_on_minimal_growthrate_result_2,'bar graph (histogram) plotting study_on_minimal_growthrate_result_1').
text_representation('bar graph (histogram) plotting study_on_minimal_growthrate_result_1').
has_proposition(study_on_minimal_growthrate_result_2,'results/km_wm_growth_rate1.tiff').
link('results/km_wm_growth_rate1.tiff').
has_proposition(study_on_minimal_growthrate_result_2,'results/km_wm_growth_rate2.tiff').
link('results/km_wm_growth_rate2.tiff').
has_proposition(study_on_minimal_growthrate_result_2,'results/overlayed_growth_rate.tiff').
link('results/overlayed_growth_rate.tiff').
has_proposition(study_on_minimal_growthrate_result_2,study_on_minimal_growthrate_result_2_proc).
procedure(study_on_minimal_growthrate_result_2_proc).
has_proposition(study_on_minimal_growthrate_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_minimal_growthrate,study_on_minimal_growthrate_conclusion).
conclusion(study_on_minimal_growthrate_conclusion).
has_representation(study_on_minimal_growthrate_conclusion,'The knockouts had on average a higher growth rate in minimal than the wild type').
text_representation('The knockouts had on average a higher growth rate in minimal than the wild type').
has_proposition(study_on_minimal_growthrate_conclusion,'obtain statistical mode of study_on_minimal_growthrate_result_1').
procedure('obtain statistical mode of study_on_minimal_growthrate_result_1').
text_representation('obtain statistical mode of study_on_minimal_growthrate_result_1').
has_part(study_on_minimal_growthrate,trial_on_minimal_growthrate_yer152c).
trial(trial_on_minimal_growthrate_yer152c).
has_agent(trial_on_minimal_growthrate_yer152c,yer152c).
strain(yer152c).
has_proposition(trial_on_minimal_growthrate_yer152c_1,trial_on_minimal_growthrate_yer152c_1_design).
design(trial_on_minimal_growthrate_yer152c_1_design).
has_proposition(trial_on_minimal_growthrate_yer152c_1_design,trial_on_minimal_growthrate_yer152c_1_factor).
factor(trial_on_minimal_growthrate_yer152c_1_factor).
has_representation(trial_on_minimal_growthrate_yer152c_1_factor,'presence or absence of yer152c').
has_input(trial_on_minimal_growthrate_yer152c_1,trial_on_minimal_growthrate_yer152c_1_data).
data(trial_on_minimal_growthrate_yer152c_1_data).
has_part(trial_on_minimal_growthrate_yer152c_1_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_yer152c_1_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_yer152c_1_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_yer152c_1,'jan07-lyss1_expt001-plate007').
plate('jan07-lyss1_expt001-plate007').
has_proposition(trial_on_minimal_growthrate_yer152c_1,trial_on_minimal_growthrate_yer152c_1_result).
result(trial_on_minimal_growthrate_yer152c_1_result).
has_part(trial_on_minimal_growthrate_yer152c_1_result,trial_on_minimal_growthrate_yer152c_1_result_1).
has_representation(trial_on_minimal_growthrate_yer152c_1_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_yer152c_1_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_yer152c_1_result_1,trial_on_minimal_growthrate_yer152c_1_result_1_proc).
procedure(trial_on_minimal_growthrate_yer152c_1_result_1_proc).
has_representation(trial_on_minimal_growthrate_yer152c_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_yer152c_1_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_yer152c_1_result,trial_on_minimal_growthrate_yer152c_1_result_2).
has_representation(trial_on_minimal_growthrate_yer152c_1_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_yer152c_1_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_yer152c_1_result_2,trial_on_minimal_growthrate_yer152c_1_result_2_proc).
procedure(trial_on_minimal_growthrate_yer152c_1_result_2_proc).
has_representation(trial_on_minimal_growthrate_yer152c_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_yer152c_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_yer152c_2,trial_on_minimal_growthrate_yer152c_2_design).
design(trial_on_minimal_growthrate_yer152c_2_design).
has_proposition(trial_on_minimal_growthrate_yer152c_2_design,trial_on_minimal_growthrate_yer152c_2_factor).
factor(trial_on_minimal_growthrate_yer152c_2_factor).
has_representation(trial_on_minimal_growthrate_yer152c_2_factor,'presence or absence of yer152c').
has_input(trial_on_minimal_growthrate_yer152c_2,trial_on_minimal_growthrate_yer152c_2_data).
data(trial_on_minimal_growthrate_yer152c_2_data).
has_part(trial_on_minimal_growthrate_yer152c_2_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_yer152c_2_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_yer152c_2_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_yer152c_2,'jan07-lyss1_expt001-plate008').
plate('jan07-lyss1_expt001-plate008').
has_proposition(trial_on_minimal_growthrate_yer152c_2,trial_on_minimal_growthrate_yer152c_2_result).
result(trial_on_minimal_growthrate_yer152c_2_result).
has_part(trial_on_minimal_growthrate_yer152c_2_result,trial_on_minimal_growthrate_yer152c_2_result_1).
has_representation(trial_on_minimal_growthrate_yer152c_2_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_yer152c_2_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_yer152c_2_result_1,trial_on_minimal_growthrate_yer152c_2_result_1_proc).
procedure(trial_on_minimal_growthrate_yer152c_2_result_1_proc).
has_representation(trial_on_minimal_growthrate_yer152c_2_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_yer152c_2_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_yer152c_2_result,trial_on_minimal_growthrate_yer152c_2_result_2).
has_representation(trial_on_minimal_growthrate_yer152c_2_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_yer152c_2_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_yer152c_2_result_2,trial_on_minimal_growthrate_yer152c_2_result_2_proc).
procedure(trial_on_minimal_growthrate_yer152c_2_result_2_proc).
has_representation(trial_on_minimal_growthrate_yer152c_2_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_yer152c_2_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_yer152c_3,trial_on_minimal_growthrate_yer152c_3_design).
design(trial_on_minimal_growthrate_yer152c_3_design).
has_proposition(trial_on_minimal_growthrate_yer152c_3_design,trial_on_minimal_growthrate_yer152c_3_factor).
factor(trial_on_minimal_growthrate_yer152c_3_factor).
has_representation(trial_on_minimal_growthrate_yer152c_3_factor,'presence or absence of yer152c').
has_input(trial_on_minimal_growthrate_yer152c_3,trial_on_minimal_growthrate_yer152c_3_data).
data(trial_on_minimal_growthrate_yer152c_3_data).
has_part(trial_on_minimal_growthrate_yer152c_3_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_yer152c_3_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_yer152c_3_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_yer152c_3,'jan07-lyss1_expt001-plate009').
plate('jan07-lyss1_expt001-plate009').
has_proposition(trial_on_minimal_growthrate_yer152c_3,trial_on_minimal_growthrate_yer152c_3_result).
result(trial_on_minimal_growthrate_yer152c_3_result).
has_part(trial_on_minimal_growthrate_yer152c_3_result,trial_on_minimal_growthrate_yer152c_3_result_1).
has_representation(trial_on_minimal_growthrate_yer152c_3_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_yer152c_3_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_yer152c_3_result_1,trial_on_minimal_growthrate_yer152c_3_result_1_proc).
procedure(trial_on_minimal_growthrate_yer152c_3_result_1_proc).
has_representation(trial_on_minimal_growthrate_yer152c_3_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_yer152c_3_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_yer152c_3_result,trial_on_minimal_growthrate_yer152c_3_result_2).
has_representation(trial_on_minimal_growthrate_yer152c_3_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_yer152c_3_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_yer152c_3_result_2,trial_on_minimal_growthrate_yer152c_3_result_2_proc).
procedure(trial_on_minimal_growthrate_yer152c_3_result_2_proc).
has_representation(trial_on_minimal_growthrate_yer152c_3_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_yer152c_3_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_yer152c,trial_on_minimal_growthrate_yer152c_results).
result(trial_on_minimal_growthrate_yer152c_results).
has_part(trial_on_minimal_growthrate_yer152c_results,trial_on_minimal_growthrate_yer152c_results_1).
has_representation(trial_on_minimal_growthrate_yer152c_results_1,'median of knockout medians missing yer152c').
text_representation('median of knockout medians missing yer152c').
has_proposition(trial_on_minimal_growthrate_yer152c_results_1,trial_on_minimal_growthrate_yer152c_results_1_proc).
procedure(trial_on_minimal_growthrate_yer152c_results_1_proc).
has_proposition(trial_on_minimal_growthrate_yer152c_results_1_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_minimal_growthrate_yer152c_results,trial_on_minimal_growthrate_yer152c_results_2).
has_representation(trial_on_minimal_growthrate_yer152c_results_2,'median of wild type medians').
text_representation('median of wild type medians').
has_proposition(trial_on_minimal_growthrate_yer152c_results_2,trial_on_minimal_growthrate_yer152c_results_2_proc).
procedure(trial_on_minimal_growthrate_yer152c_results_2_proc).
has_proposition(trial_on_minimal_growthrate_yer152c_results_2_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_minimal_growthrate_yer152c_results,trial_on_minimal_growthrate_yer152c_results_3).
has_representation(trial_on_minimal_growthrate_yer152c_results_3,'difference between trial_on_minimal_growthrate_yer152c_results_1 and trial_on_minimal_growthrate_yer152c_results_2').
text_representation('difference between trial_on_minimal_growthrate_yer152c_results_1 and trial_on_minimal_growthrate_yer152c_results_2').
has_proposition(study_on_minimal_growthrate,study_on_minimal_growthrate_result).
result(study_on_minimal_growthrate_result).
has_part(study_on_minimal_growthrate_result,study_on_minimal_growthrate_result_1).
has_representation(study_on_minimal_growthrate_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_minimal_growthrate_result_1,'results/wm_km_growth_rate.csv').
link('results/wm_km_growth_rate.csv').
has_proposition(study_on_minimal_growthrate_result_1,study_on_minimal_growthrate_result_1_proc).
procedure(study_on_minimal_growthrate_result_1_proc).
has_proposition(study_on_minimal_growthrate_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_minimal_growthrate_result,study_on_minimal_growthrate_result_2).
has_representation(study_on_minimal_growthrate_result_2,'bar graph (histogram) plotting study_on_minimal_growthrate_result_1').
text_representation('bar graph (histogram) plotting study_on_minimal_growthrate_result_1').
has_proposition(study_on_minimal_growthrate_result_2,'results/km_wm_growth_rate1.tiff').
link('results/km_wm_growth_rate1.tiff').
has_proposition(study_on_minimal_growthrate_result_2,'results/km_wm_growth_rate2.tiff').
link('results/km_wm_growth_rate2.tiff').
has_proposition(study_on_minimal_growthrate_result_2,'results/overlayed_growth_rate.tiff').
link('results/overlayed_growth_rate.tiff').
has_proposition(study_on_minimal_growthrate_result_2,study_on_minimal_growthrate_result_2_proc).
procedure(study_on_minimal_growthrate_result_2_proc).
has_proposition(study_on_minimal_growthrate_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_minimal_growthrate,study_on_minimal_growthrate_conclusion).
conclusion(study_on_minimal_growthrate_conclusion).
has_representation(study_on_minimal_growthrate_conclusion,'The knockouts had on average a higher growth rate in minimal than the wild type').
text_representation('The knockouts had on average a higher growth rate in minimal than the wild type').
has_proposition(study_on_minimal_growthrate_conclusion,'obtain statistical mode of study_on_minimal_growthrate_result_1').
procedure('obtain statistical mode of study_on_minimal_growthrate_result_1').
text_representation('obtain statistical mode of study_on_minimal_growthrate_result_1').
has_part(study_on_minimal_growthrate,trial_on_minimal_growthrate_rsyd000001).
trial(trial_on_minimal_growthrate_rsyd000001).
has_agent(trial_on_minimal_growthrate_rsyd000001,rsyd000001).
strain(rsyd000001).
has_proposition(trial_on_minimal_growthrate_rsyd000001_1,trial_on_minimal_growthrate_rsyd000001_1_design).
design(trial_on_minimal_growthrate_rsyd000001_1_design).
has_proposition(trial_on_minimal_growthrate_rsyd000001_1_design,trial_on_minimal_growthrate_rsyd000001_1_factor).
factor(trial_on_minimal_growthrate_rsyd000001_1_factor).
has_representation(trial_on_minimal_growthrate_rsyd000001_1_factor,'presence or absence of rsyd000001').
has_input(trial_on_minimal_growthrate_rsyd000001_1,trial_on_minimal_growthrate_rsyd000001_1_data).
data(trial_on_minimal_growthrate_rsyd000001_1_data).
has_part(trial_on_minimal_growthrate_rsyd000001_1_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_rsyd000001_1_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_rsyd000001_1_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_rsyd000001_1,'jan07-lysd1_expt001-plate004').
plate('jan07-lysd1_expt001-plate004').
has_proposition(trial_on_minimal_growthrate_rsyd000001_1,trial_on_minimal_growthrate_rsyd000001_1_result).
result(trial_on_minimal_growthrate_rsyd000001_1_result).
has_part(trial_on_minimal_growthrate_rsyd000001_1_result,trial_on_minimal_growthrate_rsyd000001_1_result_1).
has_representation(trial_on_minimal_growthrate_rsyd000001_1_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_rsyd000001_1_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_rsyd000001_1_result_1,trial_on_minimal_growthrate_rsyd000001_1_result_1_proc).
procedure(trial_on_minimal_growthrate_rsyd000001_1_result_1_proc).
has_representation(trial_on_minimal_growthrate_rsyd000001_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_rsyd000001_1_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_rsyd000001_1_result,trial_on_minimal_growthrate_rsyd000001_1_result_2).
has_representation(trial_on_minimal_growthrate_rsyd000001_1_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_rsyd000001_1_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_rsyd000001_1_result_2,trial_on_minimal_growthrate_rsyd000001_1_result_2_proc).
procedure(trial_on_minimal_growthrate_rsyd000001_1_result_2_proc).
has_representation(trial_on_minimal_growthrate_rsyd000001_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_rsyd000001_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_rsyd000001_2,trial_on_minimal_growthrate_rsyd000001_2_design).
design(trial_on_minimal_growthrate_rsyd000001_2_design).
has_proposition(trial_on_minimal_growthrate_rsyd000001_2_design,trial_on_minimal_growthrate_rsyd000001_2_factor).
factor(trial_on_minimal_growthrate_rsyd000001_2_factor).
has_representation(trial_on_minimal_growthrate_rsyd000001_2_factor,'presence or absence of rsyd000001').
has_input(trial_on_minimal_growthrate_rsyd000001_2,trial_on_minimal_growthrate_rsyd000001_2_data).
data(trial_on_minimal_growthrate_rsyd000001_2_data).
has_part(trial_on_minimal_growthrate_rsyd000001_2_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_rsyd000001_2_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_rsyd000001_2_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_rsyd000001_2,'jan07-lysd1_expt001-plate005').
plate('jan07-lysd1_expt001-plate005').
has_proposition(trial_on_minimal_growthrate_rsyd000001_2,trial_on_minimal_growthrate_rsyd000001_2_result).
result(trial_on_minimal_growthrate_rsyd000001_2_result).
has_part(trial_on_minimal_growthrate_rsyd000001_2_result,trial_on_minimal_growthrate_rsyd000001_2_result_1).
has_representation(trial_on_minimal_growthrate_rsyd000001_2_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_rsyd000001_2_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_rsyd000001_2_result_1,trial_on_minimal_growthrate_rsyd000001_2_result_1_proc).
procedure(trial_on_minimal_growthrate_rsyd000001_2_result_1_proc).
has_representation(trial_on_minimal_growthrate_rsyd000001_2_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_rsyd000001_2_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_rsyd000001_2_result,trial_on_minimal_growthrate_rsyd000001_2_result_2).
has_representation(trial_on_minimal_growthrate_rsyd000001_2_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_rsyd000001_2_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_rsyd000001_2_result_2,trial_on_minimal_growthrate_rsyd000001_2_result_2_proc).
procedure(trial_on_minimal_growthrate_rsyd000001_2_result_2_proc).
has_representation(trial_on_minimal_growthrate_rsyd000001_2_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_rsyd000001_2_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_rsyd000001_3,trial_on_minimal_growthrate_rsyd000001_3_design).
design(trial_on_minimal_growthrate_rsyd000001_3_design).
has_proposition(trial_on_minimal_growthrate_rsyd000001_3_design,trial_on_minimal_growthrate_rsyd000001_3_factor).
factor(trial_on_minimal_growthrate_rsyd000001_3_factor).
has_representation(trial_on_minimal_growthrate_rsyd000001_3_factor,'presence or absence of rsyd000001').
has_input(trial_on_minimal_growthrate_rsyd000001_3,trial_on_minimal_growthrate_rsyd000001_3_data).
data(trial_on_minimal_growthrate_rsyd000001_3_data).
has_part(trial_on_minimal_growthrate_rsyd000001_3_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_rsyd000001_3_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_rsyd000001_3_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_rsyd000001_3,'jan07-lysd1_expt001-plate006').
plate('jan07-lysd1_expt001-plate006').
has_proposition(trial_on_minimal_growthrate_rsyd000001_3,trial_on_minimal_growthrate_rsyd000001_3_result).
result(trial_on_minimal_growthrate_rsyd000001_3_result).
has_part(trial_on_minimal_growthrate_rsyd000001_3_result,trial_on_minimal_growthrate_rsyd000001_3_result_1).
has_representation(trial_on_minimal_growthrate_rsyd000001_3_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_rsyd000001_3_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_rsyd000001_3_result_1,trial_on_minimal_growthrate_rsyd000001_3_result_1_proc).
procedure(trial_on_minimal_growthrate_rsyd000001_3_result_1_proc).
has_representation(trial_on_minimal_growthrate_rsyd000001_3_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_rsyd000001_3_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_rsyd000001_3_result,trial_on_minimal_growthrate_rsyd000001_3_result_2).
has_representation(trial_on_minimal_growthrate_rsyd000001_3_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_rsyd000001_3_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_rsyd000001_3_result_2,trial_on_minimal_growthrate_rsyd000001_3_result_2_proc).
procedure(trial_on_minimal_growthrate_rsyd000001_3_result_2_proc).
has_representation(trial_on_minimal_growthrate_rsyd000001_3_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_rsyd000001_3_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_rsyd000001,trial_on_minimal_growthrate_rsyd000001_results).
result(trial_on_minimal_growthrate_rsyd000001_results).
has_part(trial_on_minimal_growthrate_rsyd000001_results,trial_on_minimal_growthrate_rsyd000001_results_1).
has_representation(trial_on_minimal_growthrate_rsyd000001_results_1,'median of knockout medians missing rsyd000001').
text_representation('median of knockout medians missing rsyd000001').
has_proposition(trial_on_minimal_growthrate_rsyd000001_results_1,trial_on_minimal_growthrate_rsyd000001_results_1_proc).
procedure(trial_on_minimal_growthrate_rsyd000001_results_1_proc).
has_proposition(trial_on_minimal_growthrate_rsyd000001_results_1_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_minimal_growthrate_rsyd000001_results,trial_on_minimal_growthrate_rsyd000001_results_2).
has_representation(trial_on_minimal_growthrate_rsyd000001_results_2,'median of wild type medians').
text_representation('median of wild type medians').
has_proposition(trial_on_minimal_growthrate_rsyd000001_results_2,trial_on_minimal_growthrate_rsyd000001_results_2_proc).
procedure(trial_on_minimal_growthrate_rsyd000001_results_2_proc).
has_proposition(trial_on_minimal_growthrate_rsyd000001_results_2_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_minimal_growthrate_rsyd000001_results,trial_on_minimal_growthrate_rsyd000001_results_3).
has_representation(trial_on_minimal_growthrate_rsyd000001_results_3,'difference between trial_on_minimal_growthrate_rsyd000001_results_1 and trial_on_minimal_growthrate_rsyd000001_results_2').
text_representation('difference between trial_on_minimal_growthrate_rsyd000001_results_1 and trial_on_minimal_growthrate_rsyd000001_results_2').
has_proposition(study_on_minimal_growthrate,study_on_minimal_growthrate_result).
result(study_on_minimal_growthrate_result).
has_part(study_on_minimal_growthrate_result,study_on_minimal_growthrate_result_1).
has_representation(study_on_minimal_growthrate_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_minimal_growthrate_result_1,'results/wm_km_growth_rate.csv').
link('results/wm_km_growth_rate.csv').
has_proposition(study_on_minimal_growthrate_result_1,study_on_minimal_growthrate_result_1_proc).
procedure(study_on_minimal_growthrate_result_1_proc).
has_proposition(study_on_minimal_growthrate_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_minimal_growthrate_result,study_on_minimal_growthrate_result_2).
has_representation(study_on_minimal_growthrate_result_2,'bar graph (histogram) plotting study_on_minimal_growthrate_result_1').
text_representation('bar graph (histogram) plotting study_on_minimal_growthrate_result_1').
has_proposition(study_on_minimal_growthrate_result_2,'results/km_wm_growth_rate1.tiff').
link('results/km_wm_growth_rate1.tiff').
has_proposition(study_on_minimal_growthrate_result_2,'results/km_wm_growth_rate2.tiff').
link('results/km_wm_growth_rate2.tiff').
has_proposition(study_on_minimal_growthrate_result_2,'results/overlayed_growth_rate.tiff').
link('results/overlayed_growth_rate.tiff').
has_proposition(study_on_minimal_growthrate_result_2,study_on_minimal_growthrate_result_2_proc).
procedure(study_on_minimal_growthrate_result_2_proc).
has_proposition(study_on_minimal_growthrate_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_minimal_growthrate,study_on_minimal_growthrate_conclusion).
conclusion(study_on_minimal_growthrate_conclusion).
has_representation(study_on_minimal_growthrate_conclusion,'The knockouts had on average a higher growth rate in minimal than the wild type').
text_representation('The knockouts had on average a higher growth rate in minimal than the wild type').
has_proposition(study_on_minimal_growthrate_conclusion,'obtain statistical mode of study_on_minimal_growthrate_result_1').
procedure('obtain statistical mode of study_on_minimal_growthrate_result_1').
text_representation('obtain statistical mode of study_on_minimal_growthrate_result_1').
has_part(study_on_minimal_growthrate,trial_on_minimal_growthrate_rsyd000003).
trial(trial_on_minimal_growthrate_rsyd000003).
has_agent(trial_on_minimal_growthrate_rsyd000003,rsyd000003).
strain(rsyd000003).
has_proposition(trial_on_minimal_growthrate_rsyd000003_1,trial_on_minimal_growthrate_rsyd000003_1_design).
design(trial_on_minimal_growthrate_rsyd000003_1_design).
has_proposition(trial_on_minimal_growthrate_rsyd000003_1_design,trial_on_minimal_growthrate_rsyd000003_1_factor).
factor(trial_on_minimal_growthrate_rsyd000003_1_factor).
has_representation(trial_on_minimal_growthrate_rsyd000003_1_factor,'presence or absence of rsyd000003').
has_input(trial_on_minimal_growthrate_rsyd000003_1,trial_on_minimal_growthrate_rsyd000003_1_data).
data(trial_on_minimal_growthrate_rsyd000003_1_data).
has_part(trial_on_minimal_growthrate_rsyd000003_1_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_rsyd000003_1_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_rsyd000003_1_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_rsyd000003_1,'jan07-lysd1_expt001-plate001').
plate('jan07-lysd1_expt001-plate001').
has_proposition(trial_on_minimal_growthrate_rsyd000003_1,trial_on_minimal_growthrate_rsyd000003_1_result).
result(trial_on_minimal_growthrate_rsyd000003_1_result).
has_part(trial_on_minimal_growthrate_rsyd000003_1_result,trial_on_minimal_growthrate_rsyd000003_1_result_1).
has_representation(trial_on_minimal_growthrate_rsyd000003_1_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_rsyd000003_1_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_rsyd000003_1_result_1,trial_on_minimal_growthrate_rsyd000003_1_result_1_proc).
procedure(trial_on_minimal_growthrate_rsyd000003_1_result_1_proc).
has_representation(trial_on_minimal_growthrate_rsyd000003_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_rsyd000003_1_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_rsyd000003_1_result,trial_on_minimal_growthrate_rsyd000003_1_result_2).
has_representation(trial_on_minimal_growthrate_rsyd000003_1_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_rsyd000003_1_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_rsyd000003_1_result_2,trial_on_minimal_growthrate_rsyd000003_1_result_2_proc).
procedure(trial_on_minimal_growthrate_rsyd000003_1_result_2_proc).
has_representation(trial_on_minimal_growthrate_rsyd000003_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_rsyd000003_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_rsyd000003_2,trial_on_minimal_growthrate_rsyd000003_2_design).
design(trial_on_minimal_growthrate_rsyd000003_2_design).
has_proposition(trial_on_minimal_growthrate_rsyd000003_2_design,trial_on_minimal_growthrate_rsyd000003_2_factor).
factor(trial_on_minimal_growthrate_rsyd000003_2_factor).
has_representation(trial_on_minimal_growthrate_rsyd000003_2_factor,'presence or absence of rsyd000003').
has_input(trial_on_minimal_growthrate_rsyd000003_2,trial_on_minimal_growthrate_rsyd000003_2_data).
data(trial_on_minimal_growthrate_rsyd000003_2_data).
has_part(trial_on_minimal_growthrate_rsyd000003_2_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_rsyd000003_2_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_rsyd000003_2_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_rsyd000003_2,'jan07-lysd1_expt001-plate002').
plate('jan07-lysd1_expt001-plate002').
has_proposition(trial_on_minimal_growthrate_rsyd000003_2,trial_on_minimal_growthrate_rsyd000003_2_result).
result(trial_on_minimal_growthrate_rsyd000003_2_result).
has_part(trial_on_minimal_growthrate_rsyd000003_2_result,trial_on_minimal_growthrate_rsyd000003_2_result_1).
has_representation(trial_on_minimal_growthrate_rsyd000003_2_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_rsyd000003_2_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_rsyd000003_2_result_1,trial_on_minimal_growthrate_rsyd000003_2_result_1_proc).
procedure(trial_on_minimal_growthrate_rsyd000003_2_result_1_proc).
has_representation(trial_on_minimal_growthrate_rsyd000003_2_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_rsyd000003_2_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_rsyd000003_2_result,trial_on_minimal_growthrate_rsyd000003_2_result_2).
has_representation(trial_on_minimal_growthrate_rsyd000003_2_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_rsyd000003_2_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_rsyd000003_2_result_2,trial_on_minimal_growthrate_rsyd000003_2_result_2_proc).
procedure(trial_on_minimal_growthrate_rsyd000003_2_result_2_proc).
has_representation(trial_on_minimal_growthrate_rsyd000003_2_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_rsyd000003_2_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_rsyd000003_3,trial_on_minimal_growthrate_rsyd000003_3_design).
design(trial_on_minimal_growthrate_rsyd000003_3_design).
has_proposition(trial_on_minimal_growthrate_rsyd000003_3_design,trial_on_minimal_growthrate_rsyd000003_3_factor).
factor(trial_on_minimal_growthrate_rsyd000003_3_factor).
has_representation(trial_on_minimal_growthrate_rsyd000003_3_factor,'presence or absence of rsyd000003').
has_input(trial_on_minimal_growthrate_rsyd000003_3,trial_on_minimal_growthrate_rsyd000003_3_data).
data(trial_on_minimal_growthrate_rsyd000003_3_data).
has_part(trial_on_minimal_growthrate_rsyd000003_3_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_rsyd000003_3_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_rsyd000003_3_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_rsyd000003_3,'jan07-lysd1_expt001-plate003').
plate('jan07-lysd1_expt001-plate003').
has_proposition(trial_on_minimal_growthrate_rsyd000003_3,trial_on_minimal_growthrate_rsyd000003_3_result).
result(trial_on_minimal_growthrate_rsyd000003_3_result).
has_part(trial_on_minimal_growthrate_rsyd000003_3_result,trial_on_minimal_growthrate_rsyd000003_3_result_1).
has_representation(trial_on_minimal_growthrate_rsyd000003_3_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_rsyd000003_3_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_rsyd000003_3_result_1,trial_on_minimal_growthrate_rsyd000003_3_result_1_proc).
procedure(trial_on_minimal_growthrate_rsyd000003_3_result_1_proc).
has_representation(trial_on_minimal_growthrate_rsyd000003_3_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_rsyd000003_3_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_rsyd000003_3_result,trial_on_minimal_growthrate_rsyd000003_3_result_2).
has_representation(trial_on_minimal_growthrate_rsyd000003_3_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_rsyd000003_3_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_rsyd000003_3_result_2,trial_on_minimal_growthrate_rsyd000003_3_result_2_proc).
procedure(trial_on_minimal_growthrate_rsyd000003_3_result_2_proc).
has_representation(trial_on_minimal_growthrate_rsyd000003_3_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_rsyd000003_3_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_rsyd000003,trial_on_minimal_growthrate_rsyd000003_results).
result(trial_on_minimal_growthrate_rsyd000003_results).
has_part(trial_on_minimal_growthrate_rsyd000003_results,trial_on_minimal_growthrate_rsyd000003_results_1).
has_representation(trial_on_minimal_growthrate_rsyd000003_results_1,'median of knockout medians missing rsyd000003').
text_representation('median of knockout medians missing rsyd000003').
has_proposition(trial_on_minimal_growthrate_rsyd000003_results_1,trial_on_minimal_growthrate_rsyd000003_results_1_proc).
procedure(trial_on_minimal_growthrate_rsyd000003_results_1_proc).
has_proposition(trial_on_minimal_growthrate_rsyd000003_results_1_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_minimal_growthrate_rsyd000003_results,trial_on_minimal_growthrate_rsyd000003_results_2).
has_representation(trial_on_minimal_growthrate_rsyd000003_results_2,'median of wild type medians').
text_representation('median of wild type medians').
has_proposition(trial_on_minimal_growthrate_rsyd000003_results_2,trial_on_minimal_growthrate_rsyd000003_results_2_proc).
procedure(trial_on_minimal_growthrate_rsyd000003_results_2_proc).
has_proposition(trial_on_minimal_growthrate_rsyd000003_results_2_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_minimal_growthrate_rsyd000003_results,trial_on_minimal_growthrate_rsyd000003_results_3).
has_representation(trial_on_minimal_growthrate_rsyd000003_results_3,'difference between trial_on_minimal_growthrate_rsyd000003_results_1 and trial_on_minimal_growthrate_rsyd000003_results_2').
text_representation('difference between trial_on_minimal_growthrate_rsyd000003_results_1 and trial_on_minimal_growthrate_rsyd000003_results_2').
has_proposition(study_on_minimal_growthrate,study_on_minimal_growthrate_result).
result(study_on_minimal_growthrate_result).
has_part(study_on_minimal_growthrate_result,study_on_minimal_growthrate_result_1).
has_representation(study_on_minimal_growthrate_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_minimal_growthrate_result_1,'results/wm_km_growth_rate.csv').
link('results/wm_km_growth_rate.csv').
has_proposition(study_on_minimal_growthrate_result_1,study_on_minimal_growthrate_result_1_proc).
procedure(study_on_minimal_growthrate_result_1_proc).
has_proposition(study_on_minimal_growthrate_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_minimal_growthrate_result,study_on_minimal_growthrate_result_2).
has_representation(study_on_minimal_growthrate_result_2,'bar graph (histogram) plotting study_on_minimal_growthrate_result_1').
text_representation('bar graph (histogram) plotting study_on_minimal_growthrate_result_1').
has_proposition(study_on_minimal_growthrate_result_2,'results/km_wm_growth_rate1.tiff').
link('results/km_wm_growth_rate1.tiff').
has_proposition(study_on_minimal_growthrate_result_2,'results/km_wm_growth_rate2.tiff').
link('results/km_wm_growth_rate2.tiff').
has_proposition(study_on_minimal_growthrate_result_2,'results/overlayed_growth_rate.tiff').
link('results/overlayed_growth_rate.tiff').
has_proposition(study_on_minimal_growthrate_result_2,study_on_minimal_growthrate_result_2_proc).
procedure(study_on_minimal_growthrate_result_2_proc).
has_proposition(study_on_minimal_growthrate_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_minimal_growthrate,study_on_minimal_growthrate_conclusion).
conclusion(study_on_minimal_growthrate_conclusion).
has_representation(study_on_minimal_growthrate_conclusion,'The knockouts had on average a higher growth rate in minimal than the wild type').
text_representation('The knockouts had on average a higher growth rate in minimal than the wild type').
has_proposition(study_on_minimal_growthrate_conclusion,'obtain statistical mode of study_on_minimal_growthrate_result_1').
procedure('obtain statistical mode of study_on_minimal_growthrate_result_1').
text_representation('obtain statistical mode of study_on_minimal_growthrate_result_1').
has_part(study_on_minimal_growthrate,trial_on_minimal_growthrate_ynr034w).
trial(trial_on_minimal_growthrate_ynr034w).
has_agent(trial_on_minimal_growthrate_ynr034w,ynr034w).
strain(ynr034w).
has_proposition(trial_on_minimal_growthrate_ynr034w_1,trial_on_minimal_growthrate_ynr034w_1_design).
design(trial_on_minimal_growthrate_ynr034w_1_design).
has_proposition(trial_on_minimal_growthrate_ynr034w_1_design,trial_on_minimal_growthrate_ynr034w_1_factor).
factor(trial_on_minimal_growthrate_ynr034w_1_factor).
has_representation(trial_on_minimal_growthrate_ynr034w_1_factor,'presence or absence of ynr034w').
has_input(trial_on_minimal_growthrate_ynr034w_1,trial_on_minimal_growthrate_ynr034w_1_data).
data(trial_on_minimal_growthrate_ynr034w_1_data).
has_part(trial_on_minimal_growthrate_ynr034w_1_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_ynr034w_1_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_ynr034w_1_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_ynr034w_1,'feb07-trial1_expt001-plate006').
plate('feb07-trial1_expt001-plate006').
has_proposition(trial_on_minimal_growthrate_ynr034w_1,trial_on_minimal_growthrate_ynr034w_1_result).
result(trial_on_minimal_growthrate_ynr034w_1_result).
has_part(trial_on_minimal_growthrate_ynr034w_1_result,trial_on_minimal_growthrate_ynr034w_1_result_1).
has_representation(trial_on_minimal_growthrate_ynr034w_1_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_ynr034w_1_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_ynr034w_1_result_1,trial_on_minimal_growthrate_ynr034w_1_result_1_proc).
procedure(trial_on_minimal_growthrate_ynr034w_1_result_1_proc).
has_representation(trial_on_minimal_growthrate_ynr034w_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ynr034w_1_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_ynr034w_1_result,trial_on_minimal_growthrate_ynr034w_1_result_2).
has_representation(trial_on_minimal_growthrate_ynr034w_1_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_ynr034w_1_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_ynr034w_1_result_2,trial_on_minimal_growthrate_ynr034w_1_result_2_proc).
procedure(trial_on_minimal_growthrate_ynr034w_1_result_2_proc).
has_representation(trial_on_minimal_growthrate_ynr034w_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ynr034w_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_ynr034w_2,trial_on_minimal_growthrate_ynr034w_2_design).
design(trial_on_minimal_growthrate_ynr034w_2_design).
has_proposition(trial_on_minimal_growthrate_ynr034w_2_design,trial_on_minimal_growthrate_ynr034w_2_factor).
factor(trial_on_minimal_growthrate_ynr034w_2_factor).
has_representation(trial_on_minimal_growthrate_ynr034w_2_factor,'presence or absence of ynr034w').
has_input(trial_on_minimal_growthrate_ynr034w_2,trial_on_minimal_growthrate_ynr034w_2_data).
data(trial_on_minimal_growthrate_ynr034w_2_data).
has_part(trial_on_minimal_growthrate_ynr034w_2_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_ynr034w_2_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_ynr034w_2_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_ynr034w_2,'feb07-trial1_expt001-plate007').
plate('feb07-trial1_expt001-plate007').
has_proposition(trial_on_minimal_growthrate_ynr034w_2,trial_on_minimal_growthrate_ynr034w_2_result).
result(trial_on_minimal_growthrate_ynr034w_2_result).
has_part(trial_on_minimal_growthrate_ynr034w_2_result,trial_on_minimal_growthrate_ynr034w_2_result_1).
has_representation(trial_on_minimal_growthrate_ynr034w_2_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_ynr034w_2_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_ynr034w_2_result_1,trial_on_minimal_growthrate_ynr034w_2_result_1_proc).
procedure(trial_on_minimal_growthrate_ynr034w_2_result_1_proc).
has_representation(trial_on_minimal_growthrate_ynr034w_2_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ynr034w_2_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_ynr034w_2_result,trial_on_minimal_growthrate_ynr034w_2_result_2).
has_representation(trial_on_minimal_growthrate_ynr034w_2_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_ynr034w_2_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_ynr034w_2_result_2,trial_on_minimal_growthrate_ynr034w_2_result_2_proc).
procedure(trial_on_minimal_growthrate_ynr034w_2_result_2_proc).
has_representation(trial_on_minimal_growthrate_ynr034w_2_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ynr034w_2_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_ynr034w,trial_on_minimal_growthrate_ynr034w_results).
result(trial_on_minimal_growthrate_ynr034w_results).
has_part(trial_on_minimal_growthrate_ynr034w_results,trial_on_minimal_growthrate_ynr034w_results_1).
has_representation(trial_on_minimal_growthrate_ynr034w_results_1,'median of knockout medians missing ynr034w').
text_representation('median of knockout medians missing ynr034w').
has_proposition(trial_on_minimal_growthrate_ynr034w_results_1,trial_on_minimal_growthrate_ynr034w_results_1_proc).
procedure(trial_on_minimal_growthrate_ynr034w_results_1_proc).
has_proposition(trial_on_minimal_growthrate_ynr034w_results_1_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_minimal_growthrate_ynr034w_results,trial_on_minimal_growthrate_ynr034w_results_2).
has_representation(trial_on_minimal_growthrate_ynr034w_results_2,'median of wild type medians').
text_representation('median of wild type medians').
has_proposition(trial_on_minimal_growthrate_ynr034w_results_2,trial_on_minimal_growthrate_ynr034w_results_2_proc).
procedure(trial_on_minimal_growthrate_ynr034w_results_2_proc).
has_proposition(trial_on_minimal_growthrate_ynr034w_results_2_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_minimal_growthrate_ynr034w_results,trial_on_minimal_growthrate_ynr034w_results_3).
has_representation(trial_on_minimal_growthrate_ynr034w_results_3,'difference between trial_on_minimal_growthrate_ynr034w_results_1 and trial_on_minimal_growthrate_ynr034w_results_2').
text_representation('difference between trial_on_minimal_growthrate_ynr034w_results_1 and trial_on_minimal_growthrate_ynr034w_results_2').
has_proposition(study_on_minimal_growthrate,study_on_minimal_growthrate_result).
result(study_on_minimal_growthrate_result).
has_part(study_on_minimal_growthrate_result,study_on_minimal_growthrate_result_1).
has_representation(study_on_minimal_growthrate_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_minimal_growthrate_result_1,'results/wm_km_growth_rate.csv').
link('results/wm_km_growth_rate.csv').
has_proposition(study_on_minimal_growthrate_result_1,study_on_minimal_growthrate_result_1_proc).
procedure(study_on_minimal_growthrate_result_1_proc).
has_proposition(study_on_minimal_growthrate_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_minimal_growthrate_result,study_on_minimal_growthrate_result_2).
has_representation(study_on_minimal_growthrate_result_2,'bar graph (histogram) plotting study_on_minimal_growthrate_result_1').
text_representation('bar graph (histogram) plotting study_on_minimal_growthrate_result_1').
has_proposition(study_on_minimal_growthrate_result_2,'results/km_wm_growth_rate1.tiff').
link('results/km_wm_growth_rate1.tiff').
has_proposition(study_on_minimal_growthrate_result_2,'results/km_wm_growth_rate2.tiff').
link('results/km_wm_growth_rate2.tiff').
has_proposition(study_on_minimal_growthrate_result_2,'results/overlayed_growth_rate.tiff').
link('results/overlayed_growth_rate.tiff').
has_proposition(study_on_minimal_growthrate_result_2,study_on_minimal_growthrate_result_2_proc).
procedure(study_on_minimal_growthrate_result_2_proc).
has_proposition(study_on_minimal_growthrate_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_minimal_growthrate,study_on_minimal_growthrate_conclusion).
conclusion(study_on_minimal_growthrate_conclusion).
has_representation(study_on_minimal_growthrate_conclusion,'The knockouts had on average a higher growth rate in minimal than the wild type').
text_representation('The knockouts had on average a higher growth rate in minimal than the wild type').
has_proposition(study_on_minimal_growthrate_conclusion,'obtain statistical mode of study_on_minimal_growthrate_result_1').
procedure('obtain statistical mode of study_on_minimal_growthrate_result_1').
text_representation('obtain statistical mode of study_on_minimal_growthrate_result_1').
has_part(study_on_minimal_growthrate,trial_on_minimal_growthrate_yjl218w).
trial(trial_on_minimal_growthrate_yjl218w).
has_agent(trial_on_minimal_growthrate_yjl218w,yjl218w).
strain(yjl218w).
has_proposition(trial_on_minimal_growthrate_yjl218w_1,trial_on_minimal_growthrate_yjl218w_1_design).
design(trial_on_minimal_growthrate_yjl218w_1_design).
has_proposition(trial_on_minimal_growthrate_yjl218w_1_design,trial_on_minimal_growthrate_yjl218w_1_factor).
factor(trial_on_minimal_growthrate_yjl218w_1_factor).
has_representation(trial_on_minimal_growthrate_yjl218w_1_factor,'presence or absence of yjl218w').
has_input(trial_on_minimal_growthrate_yjl218w_1,trial_on_minimal_growthrate_yjl218w_1_data).
data(trial_on_minimal_growthrate_yjl218w_1_data).
has_part(trial_on_minimal_growthrate_yjl218w_1_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_yjl218w_1_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_yjl218w_1_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_yjl218w_1,'jan07-trial2_expt001-plate002').
plate('jan07-trial2_expt001-plate002').
has_proposition(trial_on_minimal_growthrate_yjl218w_1,trial_on_minimal_growthrate_yjl218w_1_result).
result(trial_on_minimal_growthrate_yjl218w_1_result).
has_part(trial_on_minimal_growthrate_yjl218w_1_result,trial_on_minimal_growthrate_yjl218w_1_result_1).
has_representation(trial_on_minimal_growthrate_yjl218w_1_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_yjl218w_1_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_yjl218w_1_result_1,trial_on_minimal_growthrate_yjl218w_1_result_1_proc).
procedure(trial_on_minimal_growthrate_yjl218w_1_result_1_proc).
has_representation(trial_on_minimal_growthrate_yjl218w_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_yjl218w_1_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_yjl218w_1_result,trial_on_minimal_growthrate_yjl218w_1_result_2).
has_representation(trial_on_minimal_growthrate_yjl218w_1_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_yjl218w_1_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_yjl218w_1_result_2,trial_on_minimal_growthrate_yjl218w_1_result_2_proc).
procedure(trial_on_minimal_growthrate_yjl218w_1_result_2_proc).
has_representation(trial_on_minimal_growthrate_yjl218w_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_yjl218w_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_yjl218w_2,trial_on_minimal_growthrate_yjl218w_2_design).
design(trial_on_minimal_growthrate_yjl218w_2_design).
has_proposition(trial_on_minimal_growthrate_yjl218w_2_design,trial_on_minimal_growthrate_yjl218w_2_factor).
factor(trial_on_minimal_growthrate_yjl218w_2_factor).
has_representation(trial_on_minimal_growthrate_yjl218w_2_factor,'presence or absence of yjl218w').
has_input(trial_on_minimal_growthrate_yjl218w_2,trial_on_minimal_growthrate_yjl218w_2_data).
data(trial_on_minimal_growthrate_yjl218w_2_data).
has_part(trial_on_minimal_growthrate_yjl218w_2_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_yjl218w_2_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_yjl218w_2_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_yjl218w_2,'mar07-trial1_expt001-plate001').
plate('mar07-trial1_expt001-plate001').
has_proposition(trial_on_minimal_growthrate_yjl218w_2,trial_on_minimal_growthrate_yjl218w_2_result).
result(trial_on_minimal_growthrate_yjl218w_2_result).
has_part(trial_on_minimal_growthrate_yjl218w_2_result,trial_on_minimal_growthrate_yjl218w_2_result_1).
has_representation(trial_on_minimal_growthrate_yjl218w_2_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_yjl218w_2_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_yjl218w_2_result_1,trial_on_minimal_growthrate_yjl218w_2_result_1_proc).
procedure(trial_on_minimal_growthrate_yjl218w_2_result_1_proc).
has_representation(trial_on_minimal_growthrate_yjl218w_2_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_yjl218w_2_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_yjl218w_2_result,trial_on_minimal_growthrate_yjl218w_2_result_2).
has_representation(trial_on_minimal_growthrate_yjl218w_2_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_yjl218w_2_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_yjl218w_2_result_2,trial_on_minimal_growthrate_yjl218w_2_result_2_proc).
procedure(trial_on_minimal_growthrate_yjl218w_2_result_2_proc).
has_representation(trial_on_minimal_growthrate_yjl218w_2_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_yjl218w_2_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_yjl218w,trial_on_minimal_growthrate_yjl218w_results).
result(trial_on_minimal_growthrate_yjl218w_results).
has_part(trial_on_minimal_growthrate_yjl218w_results,trial_on_minimal_growthrate_yjl218w_results_1).
has_representation(trial_on_minimal_growthrate_yjl218w_results_1,'median of knockout medians missing yjl218w').
text_representation('median of knockout medians missing yjl218w').
has_proposition(trial_on_minimal_growthrate_yjl218w_results_1,trial_on_minimal_growthrate_yjl218w_results_1_proc).
procedure(trial_on_minimal_growthrate_yjl218w_results_1_proc).
has_proposition(trial_on_minimal_growthrate_yjl218w_results_1_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_minimal_growthrate_yjl218w_results,trial_on_minimal_growthrate_yjl218w_results_2).
has_representation(trial_on_minimal_growthrate_yjl218w_results_2,'median of wild type medians').
text_representation('median of wild type medians').
has_proposition(trial_on_minimal_growthrate_yjl218w_results_2,trial_on_minimal_growthrate_yjl218w_results_2_proc).
procedure(trial_on_minimal_growthrate_yjl218w_results_2_proc).
has_proposition(trial_on_minimal_growthrate_yjl218w_results_2_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_minimal_growthrate_yjl218w_results,trial_on_minimal_growthrate_yjl218w_results_3).
has_representation(trial_on_minimal_growthrate_yjl218w_results_3,'difference between trial_on_minimal_growthrate_yjl218w_results_1 and trial_on_minimal_growthrate_yjl218w_results_2').
text_representation('difference between trial_on_minimal_growthrate_yjl218w_results_1 and trial_on_minimal_growthrate_yjl218w_results_2').
has_proposition(study_on_minimal_growthrate,study_on_minimal_growthrate_result).
result(study_on_minimal_growthrate_result).
has_part(study_on_minimal_growthrate_result,study_on_minimal_growthrate_result_1).
has_representation(study_on_minimal_growthrate_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_minimal_growthrate_result_1,'results/wm_km_growth_rate.csv').
link('results/wm_km_growth_rate.csv').
has_proposition(study_on_minimal_growthrate_result_1,study_on_minimal_growthrate_result_1_proc).
procedure(study_on_minimal_growthrate_result_1_proc).
has_proposition(study_on_minimal_growthrate_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_minimal_growthrate_result,study_on_minimal_growthrate_result_2).
has_representation(study_on_minimal_growthrate_result_2,'bar graph (histogram) plotting study_on_minimal_growthrate_result_1').
text_representation('bar graph (histogram) plotting study_on_minimal_growthrate_result_1').
has_proposition(study_on_minimal_growthrate_result_2,'results/km_wm_growth_rate1.tiff').
link('results/km_wm_growth_rate1.tiff').
has_proposition(study_on_minimal_growthrate_result_2,'results/km_wm_growth_rate2.tiff').
link('results/km_wm_growth_rate2.tiff').
has_proposition(study_on_minimal_growthrate_result_2,'results/overlayed_growth_rate.tiff').
link('results/overlayed_growth_rate.tiff').
has_proposition(study_on_minimal_growthrate_result_2,study_on_minimal_growthrate_result_2_proc).
procedure(study_on_minimal_growthrate_result_2_proc).
has_proposition(study_on_minimal_growthrate_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_minimal_growthrate,study_on_minimal_growthrate_conclusion).
conclusion(study_on_minimal_growthrate_conclusion).
has_representation(study_on_minimal_growthrate_conclusion,'The knockouts had on average a higher growth rate in minimal than the wild type').
text_representation('The knockouts had on average a higher growth rate in minimal than the wild type').
has_proposition(study_on_minimal_growthrate_conclusion,'obtain statistical mode of study_on_minimal_growthrate_result_1').
procedure('obtain statistical mode of study_on_minimal_growthrate_result_1').
text_representation('obtain statistical mode of study_on_minimal_growthrate_result_1').
has_part(study_on_minimal_growthrate,trial_on_minimal_growthrate_ydr007w).
trial(trial_on_minimal_growthrate_ydr007w).
has_agent(trial_on_minimal_growthrate_ydr007w,ydr007w).
strain(ydr007w).
has_proposition(trial_on_minimal_growthrate_ydr007w_1,trial_on_minimal_growthrate_ydr007w_1_design).
design(trial_on_minimal_growthrate_ydr007w_1_design).
has_proposition(trial_on_minimal_growthrate_ydr007w_1_design,trial_on_minimal_growthrate_ydr007w_1_factor).
factor(trial_on_minimal_growthrate_ydr007w_1_factor).
has_representation(trial_on_minimal_growthrate_ydr007w_1_factor,'presence or absence of ydr007w').
has_input(trial_on_minimal_growthrate_ydr007w_1,trial_on_minimal_growthrate_ydr007w_1_data).
data(trial_on_minimal_growthrate_ydr007w_1_data).
has_part(trial_on_minimal_growthrate_ydr007w_1_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_ydr007w_1_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_ydr007w_1_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_ydr007w_1,'nature-loop3_expt001-plate007').
plate('nature-loop3_expt001-plate007').
has_proposition(trial_on_minimal_growthrate_ydr007w_1,trial_on_minimal_growthrate_ydr007w_1_result).
result(trial_on_minimal_growthrate_ydr007w_1_result).
has_part(trial_on_minimal_growthrate_ydr007w_1_result,trial_on_minimal_growthrate_ydr007w_1_result_1).
has_representation(trial_on_minimal_growthrate_ydr007w_1_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_ydr007w_1_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_ydr007w_1_result_1,trial_on_minimal_growthrate_ydr007w_1_result_1_proc).
procedure(trial_on_minimal_growthrate_ydr007w_1_result_1_proc).
has_representation(trial_on_minimal_growthrate_ydr007w_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ydr007w_1_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_ydr007w_1_result,trial_on_minimal_growthrate_ydr007w_1_result_2).
has_representation(trial_on_minimal_growthrate_ydr007w_1_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_ydr007w_1_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_ydr007w_1_result_2,trial_on_minimal_growthrate_ydr007w_1_result_2_proc).
procedure(trial_on_minimal_growthrate_ydr007w_1_result_2_proc).
has_representation(trial_on_minimal_growthrate_ydr007w_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ydr007w_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_ydr007w_2,trial_on_minimal_growthrate_ydr007w_2_design).
design(trial_on_minimal_growthrate_ydr007w_2_design).
has_proposition(trial_on_minimal_growthrate_ydr007w_2_design,trial_on_minimal_growthrate_ydr007w_2_factor).
factor(trial_on_minimal_growthrate_ydr007w_2_factor).
has_representation(trial_on_minimal_growthrate_ydr007w_2_factor,'presence or absence of ydr007w').
has_input(trial_on_minimal_growthrate_ydr007w_2,trial_on_minimal_growthrate_ydr007w_2_data).
data(trial_on_minimal_growthrate_ydr007w_2_data).
has_part(trial_on_minimal_growthrate_ydr007w_2_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_ydr007w_2_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_ydr007w_2_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_ydr007w_2,'nature-loop3_expt002-plate002').
plate('nature-loop3_expt002-plate002').
has_proposition(trial_on_minimal_growthrate_ydr007w_2,trial_on_minimal_growthrate_ydr007w_2_result).
result(trial_on_minimal_growthrate_ydr007w_2_result).
has_part(trial_on_minimal_growthrate_ydr007w_2_result,trial_on_minimal_growthrate_ydr007w_2_result_1).
has_representation(trial_on_minimal_growthrate_ydr007w_2_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_ydr007w_2_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_ydr007w_2_result_1,trial_on_minimal_growthrate_ydr007w_2_result_1_proc).
procedure(trial_on_minimal_growthrate_ydr007w_2_result_1_proc).
has_representation(trial_on_minimal_growthrate_ydr007w_2_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ydr007w_2_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_ydr007w_2_result,trial_on_minimal_growthrate_ydr007w_2_result_2).
has_representation(trial_on_minimal_growthrate_ydr007w_2_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_ydr007w_2_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_ydr007w_2_result_2,trial_on_minimal_growthrate_ydr007w_2_result_2_proc).
procedure(trial_on_minimal_growthrate_ydr007w_2_result_2_proc).
has_representation(trial_on_minimal_growthrate_ydr007w_2_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ydr007w_2_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_ydr007w_3,trial_on_minimal_growthrate_ydr007w_3_design).
design(trial_on_minimal_growthrate_ydr007w_3_design).
has_proposition(trial_on_minimal_growthrate_ydr007w_3_design,trial_on_minimal_growthrate_ydr007w_3_factor).
factor(trial_on_minimal_growthrate_ydr007w_3_factor).
has_representation(trial_on_minimal_growthrate_ydr007w_3_factor,'presence or absence of ydr007w').
has_input(trial_on_minimal_growthrate_ydr007w_3,trial_on_minimal_growthrate_ydr007w_3_data).
data(trial_on_minimal_growthrate_ydr007w_3_data).
has_part(trial_on_minimal_growthrate_ydr007w_3_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_ydr007w_3_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_ydr007w_3_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_ydr007w_3,'nature-loop3_expt003-plate007').
plate('nature-loop3_expt003-plate007').
has_proposition(trial_on_minimal_growthrate_ydr007w_3,trial_on_minimal_growthrate_ydr007w_3_result).
result(trial_on_minimal_growthrate_ydr007w_3_result).
has_part(trial_on_minimal_growthrate_ydr007w_3_result,trial_on_minimal_growthrate_ydr007w_3_result_1).
has_representation(trial_on_minimal_growthrate_ydr007w_3_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_ydr007w_3_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_ydr007w_3_result_1,trial_on_minimal_growthrate_ydr007w_3_result_1_proc).
procedure(trial_on_minimal_growthrate_ydr007w_3_result_1_proc).
has_representation(trial_on_minimal_growthrate_ydr007w_3_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ydr007w_3_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_ydr007w_3_result,trial_on_minimal_growthrate_ydr007w_3_result_2).
has_representation(trial_on_minimal_growthrate_ydr007w_3_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_ydr007w_3_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_ydr007w_3_result_2,trial_on_minimal_growthrate_ydr007w_3_result_2_proc).
procedure(trial_on_minimal_growthrate_ydr007w_3_result_2_proc).
has_representation(trial_on_minimal_growthrate_ydr007w_3_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ydr007w_3_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_ydr007w_4,trial_on_minimal_growthrate_ydr007w_4_design).
design(trial_on_minimal_growthrate_ydr007w_4_design).
has_proposition(trial_on_minimal_growthrate_ydr007w_4_design,trial_on_minimal_growthrate_ydr007w_4_factor).
factor(trial_on_minimal_growthrate_ydr007w_4_factor).
has_representation(trial_on_minimal_growthrate_ydr007w_4_factor,'presence or absence of ydr007w').
has_input(trial_on_minimal_growthrate_ydr007w_4,trial_on_minimal_growthrate_ydr007w_4_data).
data(trial_on_minimal_growthrate_ydr007w_4_data).
has_part(trial_on_minimal_growthrate_ydr007w_4_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_ydr007w_4_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_ydr007w_4_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_ydr007w_4,'nature-loop3_expt004-plate002').
plate('nature-loop3_expt004-plate002').
has_proposition(trial_on_minimal_growthrate_ydr007w_4,trial_on_minimal_growthrate_ydr007w_4_result).
result(trial_on_minimal_growthrate_ydr007w_4_result).
has_part(trial_on_minimal_growthrate_ydr007w_4_result,trial_on_minimal_growthrate_ydr007w_4_result_1).
has_representation(trial_on_minimal_growthrate_ydr007w_4_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_ydr007w_4_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_ydr007w_4_result_1,trial_on_minimal_growthrate_ydr007w_4_result_1_proc).
procedure(trial_on_minimal_growthrate_ydr007w_4_result_1_proc).
has_representation(trial_on_minimal_growthrate_ydr007w_4_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ydr007w_4_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_ydr007w_4_result,trial_on_minimal_growthrate_ydr007w_4_result_2).
has_representation(trial_on_minimal_growthrate_ydr007w_4_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_ydr007w_4_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_ydr007w_4_result_2,trial_on_minimal_growthrate_ydr007w_4_result_2_proc).
procedure(trial_on_minimal_growthrate_ydr007w_4_result_2_proc).
has_representation(trial_on_minimal_growthrate_ydr007w_4_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ydr007w_4_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_ydr007w_5,trial_on_minimal_growthrate_ydr007w_5_design).
design(trial_on_minimal_growthrate_ydr007w_5_design).
has_proposition(trial_on_minimal_growthrate_ydr007w_5_design,trial_on_minimal_growthrate_ydr007w_5_factor).
factor(trial_on_minimal_growthrate_ydr007w_5_factor).
has_representation(trial_on_minimal_growthrate_ydr007w_5_factor,'presence or absence of ydr007w').
has_input(trial_on_minimal_growthrate_ydr007w_5,trial_on_minimal_growthrate_ydr007w_5_data).
data(trial_on_minimal_growthrate_ydr007w_5_data).
has_part(trial_on_minimal_growthrate_ydr007w_5_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_ydr007w_5_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_ydr007w_5_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_ydr007w_5,'nature-loop3_expt005-plate002').
plate('nature-loop3_expt005-plate002').
has_proposition(trial_on_minimal_growthrate_ydr007w_5,trial_on_minimal_growthrate_ydr007w_5_result).
result(trial_on_minimal_growthrate_ydr007w_5_result).
has_part(trial_on_minimal_growthrate_ydr007w_5_result,trial_on_minimal_growthrate_ydr007w_5_result_1).
has_representation(trial_on_minimal_growthrate_ydr007w_5_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_ydr007w_5_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_ydr007w_5_result_1,trial_on_minimal_growthrate_ydr007w_5_result_1_proc).
procedure(trial_on_minimal_growthrate_ydr007w_5_result_1_proc).
has_representation(trial_on_minimal_growthrate_ydr007w_5_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ydr007w_5_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_ydr007w_5_result,trial_on_minimal_growthrate_ydr007w_5_result_2).
has_representation(trial_on_minimal_growthrate_ydr007w_5_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_ydr007w_5_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_ydr007w_5_result_2,trial_on_minimal_growthrate_ydr007w_5_result_2_proc).
procedure(trial_on_minimal_growthrate_ydr007w_5_result_2_proc).
has_representation(trial_on_minimal_growthrate_ydr007w_5_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ydr007w_5_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_ydr007w_6,trial_on_minimal_growthrate_ydr007w_6_design).
design(trial_on_minimal_growthrate_ydr007w_6_design).
has_proposition(trial_on_minimal_growthrate_ydr007w_6_design,trial_on_minimal_growthrate_ydr007w_6_factor).
factor(trial_on_minimal_growthrate_ydr007w_6_factor).
has_representation(trial_on_minimal_growthrate_ydr007w_6_factor,'presence or absence of ydr007w').
has_input(trial_on_minimal_growthrate_ydr007w_6,trial_on_minimal_growthrate_ydr007w_6_data).
data(trial_on_minimal_growthrate_ydr007w_6_data).
has_part(trial_on_minimal_growthrate_ydr007w_6_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_ydr007w_6_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_ydr007w_6_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_ydr007w_6,'nature-loop1_expt001-plate007').
plate('nature-loop1_expt001-plate007').
has_proposition(trial_on_minimal_growthrate_ydr007w_6,trial_on_minimal_growthrate_ydr007w_6_result).
result(trial_on_minimal_growthrate_ydr007w_6_result).
has_part(trial_on_minimal_growthrate_ydr007w_6_result,trial_on_minimal_growthrate_ydr007w_6_result_1).
has_representation(trial_on_minimal_growthrate_ydr007w_6_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_ydr007w_6_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_ydr007w_6_result_1,trial_on_minimal_growthrate_ydr007w_6_result_1_proc).
procedure(trial_on_minimal_growthrate_ydr007w_6_result_1_proc).
has_representation(trial_on_minimal_growthrate_ydr007w_6_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ydr007w_6_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_ydr007w_6_result,trial_on_minimal_growthrate_ydr007w_6_result_2).
has_representation(trial_on_minimal_growthrate_ydr007w_6_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_ydr007w_6_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_ydr007w_6_result_2,trial_on_minimal_growthrate_ydr007w_6_result_2_proc).
procedure(trial_on_minimal_growthrate_ydr007w_6_result_2_proc).
has_representation(trial_on_minimal_growthrate_ydr007w_6_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ydr007w_6_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_ydr007w_7,trial_on_minimal_growthrate_ydr007w_7_design).
design(trial_on_minimal_growthrate_ydr007w_7_design).
has_proposition(trial_on_minimal_growthrate_ydr007w_7_design,trial_on_minimal_growthrate_ydr007w_7_factor).
factor(trial_on_minimal_growthrate_ydr007w_7_factor).
has_representation(trial_on_minimal_growthrate_ydr007w_7_factor,'presence or absence of ydr007w').
has_input(trial_on_minimal_growthrate_ydr007w_7,trial_on_minimal_growthrate_ydr007w_7_data).
data(trial_on_minimal_growthrate_ydr007w_7_data).
has_part(trial_on_minimal_growthrate_ydr007w_7_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_ydr007w_7_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_ydr007w_7_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_ydr007w_7,'nature-loop2_expt001-plate003').
plate('nature-loop2_expt001-plate003').
has_proposition(trial_on_minimal_growthrate_ydr007w_7,trial_on_minimal_growthrate_ydr007w_7_result).
result(trial_on_minimal_growthrate_ydr007w_7_result).
has_part(trial_on_minimal_growthrate_ydr007w_7_result,trial_on_minimal_growthrate_ydr007w_7_result_1).
has_representation(trial_on_minimal_growthrate_ydr007w_7_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_ydr007w_7_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_ydr007w_7_result_1,trial_on_minimal_growthrate_ydr007w_7_result_1_proc).
procedure(trial_on_minimal_growthrate_ydr007w_7_result_1_proc).
has_representation(trial_on_minimal_growthrate_ydr007w_7_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ydr007w_7_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_ydr007w_7_result,trial_on_minimal_growthrate_ydr007w_7_result_2).
has_representation(trial_on_minimal_growthrate_ydr007w_7_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_ydr007w_7_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_ydr007w_7_result_2,trial_on_minimal_growthrate_ydr007w_7_result_2_proc).
procedure(trial_on_minimal_growthrate_ydr007w_7_result_2_proc).
has_representation(trial_on_minimal_growthrate_ydr007w_7_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ydr007w_7_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_ydr007w_8,trial_on_minimal_growthrate_ydr007w_8_design).
design(trial_on_minimal_growthrate_ydr007w_8_design).
has_proposition(trial_on_minimal_growthrate_ydr007w_8_design,trial_on_minimal_growthrate_ydr007w_8_factor).
factor(trial_on_minimal_growthrate_ydr007w_8_factor).
has_representation(trial_on_minimal_growthrate_ydr007w_8_factor,'presence or absence of ydr007w').
has_input(trial_on_minimal_growthrate_ydr007w_8,trial_on_minimal_growthrate_ydr007w_8_data).
data(trial_on_minimal_growthrate_ydr007w_8_data).
has_part(trial_on_minimal_growthrate_ydr007w_8_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_ydr007w_8_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_ydr007w_8_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_ydr007w_8,'nature-loop3_expt006-plate001').
plate('nature-loop3_expt006-plate001').
has_proposition(trial_on_minimal_growthrate_ydr007w_8,trial_on_minimal_growthrate_ydr007w_8_result).
result(trial_on_minimal_growthrate_ydr007w_8_result).
has_part(trial_on_minimal_growthrate_ydr007w_8_result,trial_on_minimal_growthrate_ydr007w_8_result_1).
has_representation(trial_on_minimal_growthrate_ydr007w_8_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_ydr007w_8_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_ydr007w_8_result_1,trial_on_minimal_growthrate_ydr007w_8_result_1_proc).
procedure(trial_on_minimal_growthrate_ydr007w_8_result_1_proc).
has_representation(trial_on_minimal_growthrate_ydr007w_8_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ydr007w_8_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_ydr007w_8_result,trial_on_minimal_growthrate_ydr007w_8_result_2).
has_representation(trial_on_minimal_growthrate_ydr007w_8_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_ydr007w_8_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_ydr007w_8_result_2,trial_on_minimal_growthrate_ydr007w_8_result_2_proc).
procedure(trial_on_minimal_growthrate_ydr007w_8_result_2_proc).
has_representation(trial_on_minimal_growthrate_ydr007w_8_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ydr007w_8_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_ydr007w,trial_on_minimal_growthrate_ydr007w_results).
result(trial_on_minimal_growthrate_ydr007w_results).
has_part(trial_on_minimal_growthrate_ydr007w_results,trial_on_minimal_growthrate_ydr007w_results_1).
has_representation(trial_on_minimal_growthrate_ydr007w_results_1,'median of knockout medians missing ydr007w').
text_representation('median of knockout medians missing ydr007w').
has_proposition(trial_on_minimal_growthrate_ydr007w_results_1,trial_on_minimal_growthrate_ydr007w_results_1_proc).
procedure(trial_on_minimal_growthrate_ydr007w_results_1_proc).
has_proposition(trial_on_minimal_growthrate_ydr007w_results_1_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_minimal_growthrate_ydr007w_results,trial_on_minimal_growthrate_ydr007w_results_2).
has_representation(trial_on_minimal_growthrate_ydr007w_results_2,'median of wild type medians').
text_representation('median of wild type medians').
has_proposition(trial_on_minimal_growthrate_ydr007w_results_2,trial_on_minimal_growthrate_ydr007w_results_2_proc).
procedure(trial_on_minimal_growthrate_ydr007w_results_2_proc).
has_proposition(trial_on_minimal_growthrate_ydr007w_results_2_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_minimal_growthrate_ydr007w_results,trial_on_minimal_growthrate_ydr007w_results_3).
has_representation(trial_on_minimal_growthrate_ydr007w_results_3,'difference between trial_on_minimal_growthrate_ydr007w_results_1 and trial_on_minimal_growthrate_ydr007w_results_2').
text_representation('difference between trial_on_minimal_growthrate_ydr007w_results_1 and trial_on_minimal_growthrate_ydr007w_results_2').
has_proposition(study_on_minimal_growthrate,study_on_minimal_growthrate_result).
result(study_on_minimal_growthrate_result).
has_part(study_on_minimal_growthrate_result,study_on_minimal_growthrate_result_1).
has_representation(study_on_minimal_growthrate_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_minimal_growthrate_result_1,'results/wm_km_growth_rate.csv').
link('results/wm_km_growth_rate.csv').
has_proposition(study_on_minimal_growthrate_result_1,study_on_minimal_growthrate_result_1_proc).
procedure(study_on_minimal_growthrate_result_1_proc).
has_proposition(study_on_minimal_growthrate_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_minimal_growthrate_result,study_on_minimal_growthrate_result_2).
has_representation(study_on_minimal_growthrate_result_2,'bar graph (histogram) plotting study_on_minimal_growthrate_result_1').
text_representation('bar graph (histogram) plotting study_on_minimal_growthrate_result_1').
has_proposition(study_on_minimal_growthrate_result_2,'results/km_wm_growth_rate1.tiff').
link('results/km_wm_growth_rate1.tiff').
has_proposition(study_on_minimal_growthrate_result_2,'results/km_wm_growth_rate2.tiff').
link('results/km_wm_growth_rate2.tiff').
has_proposition(study_on_minimal_growthrate_result_2,'results/overlayed_growth_rate.tiff').
link('results/overlayed_growth_rate.tiff').
has_proposition(study_on_minimal_growthrate_result_2,study_on_minimal_growthrate_result_2_proc).
procedure(study_on_minimal_growthrate_result_2_proc).
has_proposition(study_on_minimal_growthrate_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_minimal_growthrate,study_on_minimal_growthrate_conclusion).
conclusion(study_on_minimal_growthrate_conclusion).
has_representation(study_on_minimal_growthrate_conclusion,'The knockouts had on average a higher growth rate in minimal than the wild type').
text_representation('The knockouts had on average a higher growth rate in minimal than the wild type').
has_proposition(study_on_minimal_growthrate_conclusion,'obtain statistical mode of study_on_minimal_growthrate_result_1').
procedure('obtain statistical mode of study_on_minimal_growthrate_result_1').
text_representation('obtain statistical mode of study_on_minimal_growthrate_result_1').
has_part(study_on_minimal_growthrate,trial_on_minimal_growthrate_ygl026c).
trial(trial_on_minimal_growthrate_ygl026c).
has_agent(trial_on_minimal_growthrate_ygl026c,ygl026c).
strain(ygl026c).
has_proposition(trial_on_minimal_growthrate_ygl026c_1,trial_on_minimal_growthrate_ygl026c_1_design).
design(trial_on_minimal_growthrate_ygl026c_1_design).
has_proposition(trial_on_minimal_growthrate_ygl026c_1_design,trial_on_minimal_growthrate_ygl026c_1_factor).
factor(trial_on_minimal_growthrate_ygl026c_1_factor).
has_representation(trial_on_minimal_growthrate_ygl026c_1_factor,'presence or absence of ygl026c').
has_input(trial_on_minimal_growthrate_ygl026c_1,trial_on_minimal_growthrate_ygl026c_1_data).
data(trial_on_minimal_growthrate_ygl026c_1_data).
has_part(trial_on_minimal_growthrate_ygl026c_1_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_ygl026c_1_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_ygl026c_1_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_ygl026c_1,'nature-loop3_expt001-plate003').
plate('nature-loop3_expt001-plate003').
has_proposition(trial_on_minimal_growthrate_ygl026c_1,trial_on_minimal_growthrate_ygl026c_1_result).
result(trial_on_minimal_growthrate_ygl026c_1_result).
has_part(trial_on_minimal_growthrate_ygl026c_1_result,trial_on_minimal_growthrate_ygl026c_1_result_1).
has_representation(trial_on_minimal_growthrate_ygl026c_1_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_ygl026c_1_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_ygl026c_1_result_1,trial_on_minimal_growthrate_ygl026c_1_result_1_proc).
procedure(trial_on_minimal_growthrate_ygl026c_1_result_1_proc).
has_representation(trial_on_minimal_growthrate_ygl026c_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ygl026c_1_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_ygl026c_1_result,trial_on_minimal_growthrate_ygl026c_1_result_2).
has_representation(trial_on_minimal_growthrate_ygl026c_1_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_ygl026c_1_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_ygl026c_1_result_2,trial_on_minimal_growthrate_ygl026c_1_result_2_proc).
procedure(trial_on_minimal_growthrate_ygl026c_1_result_2_proc).
has_representation(trial_on_minimal_growthrate_ygl026c_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ygl026c_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_ygl026c_2,trial_on_minimal_growthrate_ygl026c_2_design).
design(trial_on_minimal_growthrate_ygl026c_2_design).
has_proposition(trial_on_minimal_growthrate_ygl026c_2_design,trial_on_minimal_growthrate_ygl026c_2_factor).
factor(trial_on_minimal_growthrate_ygl026c_2_factor).
has_representation(trial_on_minimal_growthrate_ygl026c_2_factor,'presence or absence of ygl026c').
has_input(trial_on_minimal_growthrate_ygl026c_2,trial_on_minimal_growthrate_ygl026c_2_data).
data(trial_on_minimal_growthrate_ygl026c_2_data).
has_part(trial_on_minimal_growthrate_ygl026c_2_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_ygl026c_2_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_ygl026c_2_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_ygl026c_2,'nature-loop3_expt002-plate006').
plate('nature-loop3_expt002-plate006').
has_proposition(trial_on_minimal_growthrate_ygl026c_2,trial_on_minimal_growthrate_ygl026c_2_result).
result(trial_on_minimal_growthrate_ygl026c_2_result).
has_part(trial_on_minimal_growthrate_ygl026c_2_result,trial_on_minimal_growthrate_ygl026c_2_result_1).
has_representation(trial_on_minimal_growthrate_ygl026c_2_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_ygl026c_2_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_ygl026c_2_result_1,trial_on_minimal_growthrate_ygl026c_2_result_1_proc).
procedure(trial_on_minimal_growthrate_ygl026c_2_result_1_proc).
has_representation(trial_on_minimal_growthrate_ygl026c_2_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ygl026c_2_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_ygl026c_2_result,trial_on_minimal_growthrate_ygl026c_2_result_2).
has_representation(trial_on_minimal_growthrate_ygl026c_2_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_ygl026c_2_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_ygl026c_2_result_2,trial_on_minimal_growthrate_ygl026c_2_result_2_proc).
procedure(trial_on_minimal_growthrate_ygl026c_2_result_2_proc).
has_representation(trial_on_minimal_growthrate_ygl026c_2_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ygl026c_2_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_ygl026c_3,trial_on_minimal_growthrate_ygl026c_3_design).
design(trial_on_minimal_growthrate_ygl026c_3_design).
has_proposition(trial_on_minimal_growthrate_ygl026c_3_design,trial_on_minimal_growthrate_ygl026c_3_factor).
factor(trial_on_minimal_growthrate_ygl026c_3_factor).
has_representation(trial_on_minimal_growthrate_ygl026c_3_factor,'presence or absence of ygl026c').
has_input(trial_on_minimal_growthrate_ygl026c_3,trial_on_minimal_growthrate_ygl026c_3_data).
data(trial_on_minimal_growthrate_ygl026c_3_data).
has_part(trial_on_minimal_growthrate_ygl026c_3_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_ygl026c_3_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_ygl026c_3_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_ygl026c_3,'nature-loop3_expt003-plate003').
plate('nature-loop3_expt003-plate003').
has_proposition(trial_on_minimal_growthrate_ygl026c_3,trial_on_minimal_growthrate_ygl026c_3_result).
result(trial_on_minimal_growthrate_ygl026c_3_result).
has_part(trial_on_minimal_growthrate_ygl026c_3_result,trial_on_minimal_growthrate_ygl026c_3_result_1).
has_representation(trial_on_minimal_growthrate_ygl026c_3_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_ygl026c_3_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_ygl026c_3_result_1,trial_on_minimal_growthrate_ygl026c_3_result_1_proc).
procedure(trial_on_minimal_growthrate_ygl026c_3_result_1_proc).
has_representation(trial_on_minimal_growthrate_ygl026c_3_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ygl026c_3_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_ygl026c_3_result,trial_on_minimal_growthrate_ygl026c_3_result_2).
has_representation(trial_on_minimal_growthrate_ygl026c_3_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_ygl026c_3_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_ygl026c_3_result_2,trial_on_minimal_growthrate_ygl026c_3_result_2_proc).
procedure(trial_on_minimal_growthrate_ygl026c_3_result_2_proc).
has_representation(trial_on_minimal_growthrate_ygl026c_3_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ygl026c_3_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_ygl026c_4,trial_on_minimal_growthrate_ygl026c_4_design).
design(trial_on_minimal_growthrate_ygl026c_4_design).
has_proposition(trial_on_minimal_growthrate_ygl026c_4_design,trial_on_minimal_growthrate_ygl026c_4_factor).
factor(trial_on_minimal_growthrate_ygl026c_4_factor).
has_representation(trial_on_minimal_growthrate_ygl026c_4_factor,'presence or absence of ygl026c').
has_input(trial_on_minimal_growthrate_ygl026c_4,trial_on_minimal_growthrate_ygl026c_4_data).
data(trial_on_minimal_growthrate_ygl026c_4_data).
has_part(trial_on_minimal_growthrate_ygl026c_4_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_ygl026c_4_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_ygl026c_4_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_ygl026c_4,'nature-loop3_expt004-plate006').
plate('nature-loop3_expt004-plate006').
has_proposition(trial_on_minimal_growthrate_ygl026c_4,trial_on_minimal_growthrate_ygl026c_4_result).
result(trial_on_minimal_growthrate_ygl026c_4_result).
has_part(trial_on_minimal_growthrate_ygl026c_4_result,trial_on_minimal_growthrate_ygl026c_4_result_1).
has_representation(trial_on_minimal_growthrate_ygl026c_4_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_ygl026c_4_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_ygl026c_4_result_1,trial_on_minimal_growthrate_ygl026c_4_result_1_proc).
procedure(trial_on_minimal_growthrate_ygl026c_4_result_1_proc).
has_representation(trial_on_minimal_growthrate_ygl026c_4_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ygl026c_4_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_ygl026c_4_result,trial_on_minimal_growthrate_ygl026c_4_result_2).
has_representation(trial_on_minimal_growthrate_ygl026c_4_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_ygl026c_4_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_ygl026c_4_result_2,trial_on_minimal_growthrate_ygl026c_4_result_2_proc).
procedure(trial_on_minimal_growthrate_ygl026c_4_result_2_proc).
has_representation(trial_on_minimal_growthrate_ygl026c_4_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ygl026c_4_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_ygl026c_5,trial_on_minimal_growthrate_ygl026c_5_design).
design(trial_on_minimal_growthrate_ygl026c_5_design).
has_proposition(trial_on_minimal_growthrate_ygl026c_5_design,trial_on_minimal_growthrate_ygl026c_5_factor).
factor(trial_on_minimal_growthrate_ygl026c_5_factor).
has_representation(trial_on_minimal_growthrate_ygl026c_5_factor,'presence or absence of ygl026c').
has_input(trial_on_minimal_growthrate_ygl026c_5,trial_on_minimal_growthrate_ygl026c_5_data).
data(trial_on_minimal_growthrate_ygl026c_5_data).
has_part(trial_on_minimal_growthrate_ygl026c_5_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_ygl026c_5_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_ygl026c_5_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_ygl026c_5,'nature-loop3_expt005-plate006').
plate('nature-loop3_expt005-plate006').
has_proposition(trial_on_minimal_growthrate_ygl026c_5,trial_on_minimal_growthrate_ygl026c_5_result).
result(trial_on_minimal_growthrate_ygl026c_5_result).
has_part(trial_on_minimal_growthrate_ygl026c_5_result,trial_on_minimal_growthrate_ygl026c_5_result_1).
has_representation(trial_on_minimal_growthrate_ygl026c_5_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_ygl026c_5_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_ygl026c_5_result_1,trial_on_minimal_growthrate_ygl026c_5_result_1_proc).
procedure(trial_on_minimal_growthrate_ygl026c_5_result_1_proc).
has_representation(trial_on_minimal_growthrate_ygl026c_5_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ygl026c_5_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_ygl026c_5_result,trial_on_minimal_growthrate_ygl026c_5_result_2).
has_representation(trial_on_minimal_growthrate_ygl026c_5_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_ygl026c_5_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_ygl026c_5_result_2,trial_on_minimal_growthrate_ygl026c_5_result_2_proc).
procedure(trial_on_minimal_growthrate_ygl026c_5_result_2_proc).
has_representation(trial_on_minimal_growthrate_ygl026c_5_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ygl026c_5_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_ygl026c_6,trial_on_minimal_growthrate_ygl026c_6_design).
design(trial_on_minimal_growthrate_ygl026c_6_design).
has_proposition(trial_on_minimal_growthrate_ygl026c_6_design,trial_on_minimal_growthrate_ygl026c_6_factor).
factor(trial_on_minimal_growthrate_ygl026c_6_factor).
has_representation(trial_on_minimal_growthrate_ygl026c_6_factor,'presence or absence of ygl026c').
has_input(trial_on_minimal_growthrate_ygl026c_6,trial_on_minimal_growthrate_ygl026c_6_data).
data(trial_on_minimal_growthrate_ygl026c_6_data).
has_part(trial_on_minimal_growthrate_ygl026c_6_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_ygl026c_6_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_ygl026c_6_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_ygl026c_6,'nature-loop1_expt001-plate003').
plate('nature-loop1_expt001-plate003').
has_proposition(trial_on_minimal_growthrate_ygl026c_6,trial_on_minimal_growthrate_ygl026c_6_result).
result(trial_on_minimal_growthrate_ygl026c_6_result).
has_part(trial_on_minimal_growthrate_ygl026c_6_result,trial_on_minimal_growthrate_ygl026c_6_result_1).
has_representation(trial_on_minimal_growthrate_ygl026c_6_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_ygl026c_6_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_ygl026c_6_result_1,trial_on_minimal_growthrate_ygl026c_6_result_1_proc).
procedure(trial_on_minimal_growthrate_ygl026c_6_result_1_proc).
has_representation(trial_on_minimal_growthrate_ygl026c_6_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ygl026c_6_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_ygl026c_6_result,trial_on_minimal_growthrate_ygl026c_6_result_2).
has_representation(trial_on_minimal_growthrate_ygl026c_6_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_ygl026c_6_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_ygl026c_6_result_2,trial_on_minimal_growthrate_ygl026c_6_result_2_proc).
procedure(trial_on_minimal_growthrate_ygl026c_6_result_2_proc).
has_representation(trial_on_minimal_growthrate_ygl026c_6_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ygl026c_6_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_ygl026c_7,trial_on_minimal_growthrate_ygl026c_7_design).
design(trial_on_minimal_growthrate_ygl026c_7_design).
has_proposition(trial_on_minimal_growthrate_ygl026c_7_design,trial_on_minimal_growthrate_ygl026c_7_factor).
factor(trial_on_minimal_growthrate_ygl026c_7_factor).
has_representation(trial_on_minimal_growthrate_ygl026c_7_factor,'presence or absence of ygl026c').
has_input(trial_on_minimal_growthrate_ygl026c_7,trial_on_minimal_growthrate_ygl026c_7_data).
data(trial_on_minimal_growthrate_ygl026c_7_data).
has_part(trial_on_minimal_growthrate_ygl026c_7_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_ygl026c_7_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_ygl026c_7_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_ygl026c_7,'nature-loop2_expt001-plate005').
plate('nature-loop2_expt001-plate005').
has_proposition(trial_on_minimal_growthrate_ygl026c_7,trial_on_minimal_growthrate_ygl026c_7_result).
result(trial_on_minimal_growthrate_ygl026c_7_result).
has_part(trial_on_minimal_growthrate_ygl026c_7_result,trial_on_minimal_growthrate_ygl026c_7_result_1).
has_representation(trial_on_minimal_growthrate_ygl026c_7_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_ygl026c_7_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_ygl026c_7_result_1,trial_on_minimal_growthrate_ygl026c_7_result_1_proc).
procedure(trial_on_minimal_growthrate_ygl026c_7_result_1_proc).
has_representation(trial_on_minimal_growthrate_ygl026c_7_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ygl026c_7_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_ygl026c_7_result,trial_on_minimal_growthrate_ygl026c_7_result_2).
has_representation(trial_on_minimal_growthrate_ygl026c_7_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_ygl026c_7_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_ygl026c_7_result_2,trial_on_minimal_growthrate_ygl026c_7_result_2_proc).
procedure(trial_on_minimal_growthrate_ygl026c_7_result_2_proc).
has_representation(trial_on_minimal_growthrate_ygl026c_7_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ygl026c_7_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_ygl026c_8,trial_on_minimal_growthrate_ygl026c_8_design).
design(trial_on_minimal_growthrate_ygl026c_8_design).
has_proposition(trial_on_minimal_growthrate_ygl026c_8_design,trial_on_minimal_growthrate_ygl026c_8_factor).
factor(trial_on_minimal_growthrate_ygl026c_8_factor).
has_representation(trial_on_minimal_growthrate_ygl026c_8_factor,'presence or absence of ygl026c').
has_input(trial_on_minimal_growthrate_ygl026c_8,trial_on_minimal_growthrate_ygl026c_8_data).
data(trial_on_minimal_growthrate_ygl026c_8_data).
has_part(trial_on_minimal_growthrate_ygl026c_8_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_ygl026c_8_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_ygl026c_8_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_ygl026c_8,'nature-loop3_expt006-plate005').
plate('nature-loop3_expt006-plate005').
has_proposition(trial_on_minimal_growthrate_ygl026c_8,trial_on_minimal_growthrate_ygl026c_8_result).
result(trial_on_minimal_growthrate_ygl026c_8_result).
has_part(trial_on_minimal_growthrate_ygl026c_8_result,trial_on_minimal_growthrate_ygl026c_8_result_1).
has_representation(trial_on_minimal_growthrate_ygl026c_8_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_ygl026c_8_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_ygl026c_8_result_1,trial_on_minimal_growthrate_ygl026c_8_result_1_proc).
procedure(trial_on_minimal_growthrate_ygl026c_8_result_1_proc).
has_representation(trial_on_minimal_growthrate_ygl026c_8_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ygl026c_8_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_ygl026c_8_result,trial_on_minimal_growthrate_ygl026c_8_result_2).
has_representation(trial_on_minimal_growthrate_ygl026c_8_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_ygl026c_8_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_ygl026c_8_result_2,trial_on_minimal_growthrate_ygl026c_8_result_2_proc).
procedure(trial_on_minimal_growthrate_ygl026c_8_result_2_proc).
has_representation(trial_on_minimal_growthrate_ygl026c_8_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ygl026c_8_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_ygl026c,trial_on_minimal_growthrate_ygl026c_results).
result(trial_on_minimal_growthrate_ygl026c_results).
has_part(trial_on_minimal_growthrate_ygl026c_results,trial_on_minimal_growthrate_ygl026c_results_1).
has_representation(trial_on_minimal_growthrate_ygl026c_results_1,'median of knockout medians missing ygl026c').
text_representation('median of knockout medians missing ygl026c').
has_proposition(trial_on_minimal_growthrate_ygl026c_results_1,trial_on_minimal_growthrate_ygl026c_results_1_proc).
procedure(trial_on_minimal_growthrate_ygl026c_results_1_proc).
has_proposition(trial_on_minimal_growthrate_ygl026c_results_1_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_minimal_growthrate_ygl026c_results,trial_on_minimal_growthrate_ygl026c_results_2).
has_representation(trial_on_minimal_growthrate_ygl026c_results_2,'median of wild type medians').
text_representation('median of wild type medians').
has_proposition(trial_on_minimal_growthrate_ygl026c_results_2,trial_on_minimal_growthrate_ygl026c_results_2_proc).
procedure(trial_on_minimal_growthrate_ygl026c_results_2_proc).
has_proposition(trial_on_minimal_growthrate_ygl026c_results_2_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_minimal_growthrate_ygl026c_results,trial_on_minimal_growthrate_ygl026c_results_3).
has_representation(trial_on_minimal_growthrate_ygl026c_results_3,'difference between trial_on_minimal_growthrate_ygl026c_results_1 and trial_on_minimal_growthrate_ygl026c_results_2').
text_representation('difference between trial_on_minimal_growthrate_ygl026c_results_1 and trial_on_minimal_growthrate_ygl026c_results_2').
has_proposition(study_on_minimal_growthrate,study_on_minimal_growthrate_result).
result(study_on_minimal_growthrate_result).
has_part(study_on_minimal_growthrate_result,study_on_minimal_growthrate_result_1).
has_representation(study_on_minimal_growthrate_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_minimal_growthrate_result_1,'results/wm_km_growth_rate.csv').
link('results/wm_km_growth_rate.csv').
has_proposition(study_on_minimal_growthrate_result_1,study_on_minimal_growthrate_result_1_proc).
procedure(study_on_minimal_growthrate_result_1_proc).
has_proposition(study_on_minimal_growthrate_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_minimal_growthrate_result,study_on_minimal_growthrate_result_2).
has_representation(study_on_minimal_growthrate_result_2,'bar graph (histogram) plotting study_on_minimal_growthrate_result_1').
text_representation('bar graph (histogram) plotting study_on_minimal_growthrate_result_1').
has_proposition(study_on_minimal_growthrate_result_2,'results/km_wm_growth_rate1.tiff').
link('results/km_wm_growth_rate1.tiff').
has_proposition(study_on_minimal_growthrate_result_2,'results/km_wm_growth_rate2.tiff').
link('results/km_wm_growth_rate2.tiff').
has_proposition(study_on_minimal_growthrate_result_2,'results/overlayed_growth_rate.tiff').
link('results/overlayed_growth_rate.tiff').
has_proposition(study_on_minimal_growthrate_result_2,study_on_minimal_growthrate_result_2_proc).
procedure(study_on_minimal_growthrate_result_2_proc).
has_proposition(study_on_minimal_growthrate_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_minimal_growthrate,study_on_minimal_growthrate_conclusion).
conclusion(study_on_minimal_growthrate_conclusion).
has_representation(study_on_minimal_growthrate_conclusion,'The knockouts had on average a higher growth rate in minimal than the wild type').
text_representation('The knockouts had on average a higher growth rate in minimal than the wild type').
has_proposition(study_on_minimal_growthrate_conclusion,'obtain statistical mode of study_on_minimal_growthrate_result_1').
procedure('obtain statistical mode of study_on_minimal_growthrate_result_1').
text_representation('obtain statistical mode of study_on_minimal_growthrate_result_1').
has_part(study_on_minimal_growthrate,trial_on_minimal_growthrate_ydr354w).
trial(trial_on_minimal_growthrate_ydr354w).
has_agent(trial_on_minimal_growthrate_ydr354w,ydr354w).
strain(ydr354w).
has_proposition(trial_on_minimal_growthrate_ydr354w_1,trial_on_minimal_growthrate_ydr354w_1_design).
design(trial_on_minimal_growthrate_ydr354w_1_design).
has_proposition(trial_on_minimal_growthrate_ydr354w_1_design,trial_on_minimal_growthrate_ydr354w_1_factor).
factor(trial_on_minimal_growthrate_ydr354w_1_factor).
has_representation(trial_on_minimal_growthrate_ydr354w_1_factor,'presence or absence of ydr354w').
has_input(trial_on_minimal_growthrate_ydr354w_1,trial_on_minimal_growthrate_ydr354w_1_data).
data(trial_on_minimal_growthrate_ydr354w_1_data).
has_part(trial_on_minimal_growthrate_ydr354w_1_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_ydr354w_1_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_ydr354w_1_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_ydr354w_1,'nature-loop3_expt001-plate005').
plate('nature-loop3_expt001-plate005').
has_proposition(trial_on_minimal_growthrate_ydr354w_1,trial_on_minimal_growthrate_ydr354w_1_result).
result(trial_on_minimal_growthrate_ydr354w_1_result).
has_part(trial_on_minimal_growthrate_ydr354w_1_result,trial_on_minimal_growthrate_ydr354w_1_result_1).
has_representation(trial_on_minimal_growthrate_ydr354w_1_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_ydr354w_1_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_ydr354w_1_result_1,trial_on_minimal_growthrate_ydr354w_1_result_1_proc).
procedure(trial_on_minimal_growthrate_ydr354w_1_result_1_proc).
has_representation(trial_on_minimal_growthrate_ydr354w_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ydr354w_1_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_ydr354w_1_result,trial_on_minimal_growthrate_ydr354w_1_result_2).
has_representation(trial_on_minimal_growthrate_ydr354w_1_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_ydr354w_1_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_ydr354w_1_result_2,trial_on_minimal_growthrate_ydr354w_1_result_2_proc).
procedure(trial_on_minimal_growthrate_ydr354w_1_result_2_proc).
has_representation(trial_on_minimal_growthrate_ydr354w_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ydr354w_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_ydr354w_2,trial_on_minimal_growthrate_ydr354w_2_design).
design(trial_on_minimal_growthrate_ydr354w_2_design).
has_proposition(trial_on_minimal_growthrate_ydr354w_2_design,trial_on_minimal_growthrate_ydr354w_2_factor).
factor(trial_on_minimal_growthrate_ydr354w_2_factor).
has_representation(trial_on_minimal_growthrate_ydr354w_2_factor,'presence or absence of ydr354w').
has_input(trial_on_minimal_growthrate_ydr354w_2,trial_on_minimal_growthrate_ydr354w_2_data).
data(trial_on_minimal_growthrate_ydr354w_2_data).
has_part(trial_on_minimal_growthrate_ydr354w_2_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_ydr354w_2_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_ydr354w_2_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_ydr354w_2,'nature-loop3_expt002-plate004').
plate('nature-loop3_expt002-plate004').
has_proposition(trial_on_minimal_growthrate_ydr354w_2,trial_on_minimal_growthrate_ydr354w_2_result).
result(trial_on_minimal_growthrate_ydr354w_2_result).
has_part(trial_on_minimal_growthrate_ydr354w_2_result,trial_on_minimal_growthrate_ydr354w_2_result_1).
has_representation(trial_on_minimal_growthrate_ydr354w_2_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_ydr354w_2_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_ydr354w_2_result_1,trial_on_minimal_growthrate_ydr354w_2_result_1_proc).
procedure(trial_on_minimal_growthrate_ydr354w_2_result_1_proc).
has_representation(trial_on_minimal_growthrate_ydr354w_2_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ydr354w_2_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_ydr354w_2_result,trial_on_minimal_growthrate_ydr354w_2_result_2).
has_representation(trial_on_minimal_growthrate_ydr354w_2_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_ydr354w_2_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_ydr354w_2_result_2,trial_on_minimal_growthrate_ydr354w_2_result_2_proc).
procedure(trial_on_minimal_growthrate_ydr354w_2_result_2_proc).
has_representation(trial_on_minimal_growthrate_ydr354w_2_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ydr354w_2_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_ydr354w_3,trial_on_minimal_growthrate_ydr354w_3_design).
design(trial_on_minimal_growthrate_ydr354w_3_design).
has_proposition(trial_on_minimal_growthrate_ydr354w_3_design,trial_on_minimal_growthrate_ydr354w_3_factor).
factor(trial_on_minimal_growthrate_ydr354w_3_factor).
has_representation(trial_on_minimal_growthrate_ydr354w_3_factor,'presence or absence of ydr354w').
has_input(trial_on_minimal_growthrate_ydr354w_3,trial_on_minimal_growthrate_ydr354w_3_data).
data(trial_on_minimal_growthrate_ydr354w_3_data).
has_part(trial_on_minimal_growthrate_ydr354w_3_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_ydr354w_3_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_ydr354w_3_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_ydr354w_3,'nature-loop3_expt003-plate005').
plate('nature-loop3_expt003-plate005').
has_proposition(trial_on_minimal_growthrate_ydr354w_3,trial_on_minimal_growthrate_ydr354w_3_result).
result(trial_on_minimal_growthrate_ydr354w_3_result).
has_part(trial_on_minimal_growthrate_ydr354w_3_result,trial_on_minimal_growthrate_ydr354w_3_result_1).
has_representation(trial_on_minimal_growthrate_ydr354w_3_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_ydr354w_3_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_ydr354w_3_result_1,trial_on_minimal_growthrate_ydr354w_3_result_1_proc).
procedure(trial_on_minimal_growthrate_ydr354w_3_result_1_proc).
has_representation(trial_on_minimal_growthrate_ydr354w_3_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ydr354w_3_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_ydr354w_3_result,trial_on_minimal_growthrate_ydr354w_3_result_2).
has_representation(trial_on_minimal_growthrate_ydr354w_3_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_ydr354w_3_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_ydr354w_3_result_2,trial_on_minimal_growthrate_ydr354w_3_result_2_proc).
procedure(trial_on_minimal_growthrate_ydr354w_3_result_2_proc).
has_representation(trial_on_minimal_growthrate_ydr354w_3_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ydr354w_3_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_ydr354w_4,trial_on_minimal_growthrate_ydr354w_4_design).
design(trial_on_minimal_growthrate_ydr354w_4_design).
has_proposition(trial_on_minimal_growthrate_ydr354w_4_design,trial_on_minimal_growthrate_ydr354w_4_factor).
factor(trial_on_minimal_growthrate_ydr354w_4_factor).
has_representation(trial_on_minimal_growthrate_ydr354w_4_factor,'presence or absence of ydr354w').
has_input(trial_on_minimal_growthrate_ydr354w_4,trial_on_minimal_growthrate_ydr354w_4_data).
data(trial_on_minimal_growthrate_ydr354w_4_data).
has_part(trial_on_minimal_growthrate_ydr354w_4_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_ydr354w_4_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_ydr354w_4_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_ydr354w_4,'nature-loop3_expt004-plate004').
plate('nature-loop3_expt004-plate004').
has_proposition(trial_on_minimal_growthrate_ydr354w_4,trial_on_minimal_growthrate_ydr354w_4_result).
result(trial_on_minimal_growthrate_ydr354w_4_result).
has_part(trial_on_minimal_growthrate_ydr354w_4_result,trial_on_minimal_growthrate_ydr354w_4_result_1).
has_representation(trial_on_minimal_growthrate_ydr354w_4_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_ydr354w_4_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_ydr354w_4_result_1,trial_on_minimal_growthrate_ydr354w_4_result_1_proc).
procedure(trial_on_minimal_growthrate_ydr354w_4_result_1_proc).
has_representation(trial_on_minimal_growthrate_ydr354w_4_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ydr354w_4_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_ydr354w_4_result,trial_on_minimal_growthrate_ydr354w_4_result_2).
has_representation(trial_on_minimal_growthrate_ydr354w_4_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_ydr354w_4_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_ydr354w_4_result_2,trial_on_minimal_growthrate_ydr354w_4_result_2_proc).
procedure(trial_on_minimal_growthrate_ydr354w_4_result_2_proc).
has_representation(trial_on_minimal_growthrate_ydr354w_4_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ydr354w_4_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_ydr354w_5,trial_on_minimal_growthrate_ydr354w_5_design).
design(trial_on_minimal_growthrate_ydr354w_5_design).
has_proposition(trial_on_minimal_growthrate_ydr354w_5_design,trial_on_minimal_growthrate_ydr354w_5_factor).
factor(trial_on_minimal_growthrate_ydr354w_5_factor).
has_representation(trial_on_minimal_growthrate_ydr354w_5_factor,'presence or absence of ydr354w').
has_input(trial_on_minimal_growthrate_ydr354w_5,trial_on_minimal_growthrate_ydr354w_5_data).
data(trial_on_minimal_growthrate_ydr354w_5_data).
has_part(trial_on_minimal_growthrate_ydr354w_5_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_ydr354w_5_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_ydr354w_5_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_ydr354w_5,'nature-loop3_expt005-plate004').
plate('nature-loop3_expt005-plate004').
has_proposition(trial_on_minimal_growthrate_ydr354w_5,trial_on_minimal_growthrate_ydr354w_5_result).
result(trial_on_minimal_growthrate_ydr354w_5_result).
has_part(trial_on_minimal_growthrate_ydr354w_5_result,trial_on_minimal_growthrate_ydr354w_5_result_1).
has_representation(trial_on_minimal_growthrate_ydr354w_5_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_ydr354w_5_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_ydr354w_5_result_1,trial_on_minimal_growthrate_ydr354w_5_result_1_proc).
procedure(trial_on_minimal_growthrate_ydr354w_5_result_1_proc).
has_representation(trial_on_minimal_growthrate_ydr354w_5_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ydr354w_5_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_ydr354w_5_result,trial_on_minimal_growthrate_ydr354w_5_result_2).
has_representation(trial_on_minimal_growthrate_ydr354w_5_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_ydr354w_5_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_ydr354w_5_result_2,trial_on_minimal_growthrate_ydr354w_5_result_2_proc).
procedure(trial_on_minimal_growthrate_ydr354w_5_result_2_proc).
has_representation(trial_on_minimal_growthrate_ydr354w_5_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ydr354w_5_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_ydr354w_6,trial_on_minimal_growthrate_ydr354w_6_design).
design(trial_on_minimal_growthrate_ydr354w_6_design).
has_proposition(trial_on_minimal_growthrate_ydr354w_6_design,trial_on_minimal_growthrate_ydr354w_6_factor).
factor(trial_on_minimal_growthrate_ydr354w_6_factor).
has_representation(trial_on_minimal_growthrate_ydr354w_6_factor,'presence or absence of ydr354w').
has_input(trial_on_minimal_growthrate_ydr354w_6,trial_on_minimal_growthrate_ydr354w_6_data).
data(trial_on_minimal_growthrate_ydr354w_6_data).
has_part(trial_on_minimal_growthrate_ydr354w_6_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_ydr354w_6_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_ydr354w_6_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_ydr354w_6,'nature-loop1_expt001-plate005').
plate('nature-loop1_expt001-plate005').
has_proposition(trial_on_minimal_growthrate_ydr354w_6,trial_on_minimal_growthrate_ydr354w_6_result).
result(trial_on_minimal_growthrate_ydr354w_6_result).
has_part(trial_on_minimal_growthrate_ydr354w_6_result,trial_on_minimal_growthrate_ydr354w_6_result_1).
has_representation(trial_on_minimal_growthrate_ydr354w_6_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_ydr354w_6_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_ydr354w_6_result_1,trial_on_minimal_growthrate_ydr354w_6_result_1_proc).
procedure(trial_on_minimal_growthrate_ydr354w_6_result_1_proc).
has_representation(trial_on_minimal_growthrate_ydr354w_6_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ydr354w_6_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_ydr354w_6_result,trial_on_minimal_growthrate_ydr354w_6_result_2).
has_representation(trial_on_minimal_growthrate_ydr354w_6_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_ydr354w_6_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_ydr354w_6_result_2,trial_on_minimal_growthrate_ydr354w_6_result_2_proc).
procedure(trial_on_minimal_growthrate_ydr354w_6_result_2_proc).
has_representation(trial_on_minimal_growthrate_ydr354w_6_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ydr354w_6_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_ydr354w_7,trial_on_minimal_growthrate_ydr354w_7_design).
design(trial_on_minimal_growthrate_ydr354w_7_design).
has_proposition(trial_on_minimal_growthrate_ydr354w_7_design,trial_on_minimal_growthrate_ydr354w_7_factor).
factor(trial_on_minimal_growthrate_ydr354w_7_factor).
has_representation(trial_on_minimal_growthrate_ydr354w_7_factor,'presence or absence of ydr354w').
has_input(trial_on_minimal_growthrate_ydr354w_7,trial_on_minimal_growthrate_ydr354w_7_data).
data(trial_on_minimal_growthrate_ydr354w_7_data).
has_part(trial_on_minimal_growthrate_ydr354w_7_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_ydr354w_7_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_ydr354w_7_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_ydr354w_7,'nature-loop2_expt001-plate004').
plate('nature-loop2_expt001-plate004').
has_proposition(trial_on_minimal_growthrate_ydr354w_7,trial_on_minimal_growthrate_ydr354w_7_result).
result(trial_on_minimal_growthrate_ydr354w_7_result).
has_part(trial_on_minimal_growthrate_ydr354w_7_result,trial_on_minimal_growthrate_ydr354w_7_result_1).
has_representation(trial_on_minimal_growthrate_ydr354w_7_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_ydr354w_7_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_ydr354w_7_result_1,trial_on_minimal_growthrate_ydr354w_7_result_1_proc).
procedure(trial_on_minimal_growthrate_ydr354w_7_result_1_proc).
has_representation(trial_on_minimal_growthrate_ydr354w_7_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ydr354w_7_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_ydr354w_7_result,trial_on_minimal_growthrate_ydr354w_7_result_2).
has_representation(trial_on_minimal_growthrate_ydr354w_7_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_ydr354w_7_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_ydr354w_7_result_2,trial_on_minimal_growthrate_ydr354w_7_result_2_proc).
procedure(trial_on_minimal_growthrate_ydr354w_7_result_2_proc).
has_representation(trial_on_minimal_growthrate_ydr354w_7_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ydr354w_7_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_ydr354w_8,trial_on_minimal_growthrate_ydr354w_8_design).
design(trial_on_minimal_growthrate_ydr354w_8_design).
has_proposition(trial_on_minimal_growthrate_ydr354w_8_design,trial_on_minimal_growthrate_ydr354w_8_factor).
factor(trial_on_minimal_growthrate_ydr354w_8_factor).
has_representation(trial_on_minimal_growthrate_ydr354w_8_factor,'presence or absence of ydr354w').
has_input(trial_on_minimal_growthrate_ydr354w_8,trial_on_minimal_growthrate_ydr354w_8_data).
data(trial_on_minimal_growthrate_ydr354w_8_data).
has_part(trial_on_minimal_growthrate_ydr354w_8_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_ydr354w_8_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_ydr354w_8_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_ydr354w_8,'nature-loop3_expt006-plate003').
plate('nature-loop3_expt006-plate003').
has_proposition(trial_on_minimal_growthrate_ydr354w_8,trial_on_minimal_growthrate_ydr354w_8_result).
result(trial_on_minimal_growthrate_ydr354w_8_result).
has_part(trial_on_minimal_growthrate_ydr354w_8_result,trial_on_minimal_growthrate_ydr354w_8_result_1).
has_representation(trial_on_minimal_growthrate_ydr354w_8_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_ydr354w_8_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_ydr354w_8_result_1,trial_on_minimal_growthrate_ydr354w_8_result_1_proc).
procedure(trial_on_minimal_growthrate_ydr354w_8_result_1_proc).
has_representation(trial_on_minimal_growthrate_ydr354w_8_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ydr354w_8_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_ydr354w_8_result,trial_on_minimal_growthrate_ydr354w_8_result_2).
has_representation(trial_on_minimal_growthrate_ydr354w_8_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_ydr354w_8_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_ydr354w_8_result_2,trial_on_minimal_growthrate_ydr354w_8_result_2_proc).
procedure(trial_on_minimal_growthrate_ydr354w_8_result_2_proc).
has_representation(trial_on_minimal_growthrate_ydr354w_8_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ydr354w_8_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_ydr354w,trial_on_minimal_growthrate_ydr354w_results).
result(trial_on_minimal_growthrate_ydr354w_results).
has_part(trial_on_minimal_growthrate_ydr354w_results,trial_on_minimal_growthrate_ydr354w_results_1).
has_representation(trial_on_minimal_growthrate_ydr354w_results_1,'median of knockout medians missing ydr354w').
text_representation('median of knockout medians missing ydr354w').
has_proposition(trial_on_minimal_growthrate_ydr354w_results_1,trial_on_minimal_growthrate_ydr354w_results_1_proc).
procedure(trial_on_minimal_growthrate_ydr354w_results_1_proc).
has_proposition(trial_on_minimal_growthrate_ydr354w_results_1_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_minimal_growthrate_ydr354w_results,trial_on_minimal_growthrate_ydr354w_results_2).
has_representation(trial_on_minimal_growthrate_ydr354w_results_2,'median of wild type medians').
text_representation('median of wild type medians').
has_proposition(trial_on_minimal_growthrate_ydr354w_results_2,trial_on_minimal_growthrate_ydr354w_results_2_proc).
procedure(trial_on_minimal_growthrate_ydr354w_results_2_proc).
has_proposition(trial_on_minimal_growthrate_ydr354w_results_2_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_minimal_growthrate_ydr354w_results,trial_on_minimal_growthrate_ydr354w_results_3).
has_representation(trial_on_minimal_growthrate_ydr354w_results_3,'difference between trial_on_minimal_growthrate_ydr354w_results_1 and trial_on_minimal_growthrate_ydr354w_results_2').
text_representation('difference between trial_on_minimal_growthrate_ydr354w_results_1 and trial_on_minimal_growthrate_ydr354w_results_2').
has_proposition(study_on_minimal_growthrate,study_on_minimal_growthrate_result).
result(study_on_minimal_growthrate_result).
has_part(study_on_minimal_growthrate_result,study_on_minimal_growthrate_result_1).
has_representation(study_on_minimal_growthrate_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_minimal_growthrate_result_1,'results/wm_km_growth_rate.csv').
link('results/wm_km_growth_rate.csv').
has_proposition(study_on_minimal_growthrate_result_1,study_on_minimal_growthrate_result_1_proc).
procedure(study_on_minimal_growthrate_result_1_proc).
has_proposition(study_on_minimal_growthrate_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_minimal_growthrate_result,study_on_minimal_growthrate_result_2).
has_representation(study_on_minimal_growthrate_result_2,'bar graph (histogram) plotting study_on_minimal_growthrate_result_1').
text_representation('bar graph (histogram) plotting study_on_minimal_growthrate_result_1').
has_proposition(study_on_minimal_growthrate_result_2,'results/km_wm_growth_rate1.tiff').
link('results/km_wm_growth_rate1.tiff').
has_proposition(study_on_minimal_growthrate_result_2,'results/km_wm_growth_rate2.tiff').
link('results/km_wm_growth_rate2.tiff').
has_proposition(study_on_minimal_growthrate_result_2,'results/overlayed_growth_rate.tiff').
link('results/overlayed_growth_rate.tiff').
has_proposition(study_on_minimal_growthrate_result_2,study_on_minimal_growthrate_result_2_proc).
procedure(study_on_minimal_growthrate_result_2_proc).
has_proposition(study_on_minimal_growthrate_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_minimal_growthrate,study_on_minimal_growthrate_conclusion).
conclusion(study_on_minimal_growthrate_conclusion).
has_representation(study_on_minimal_growthrate_conclusion,'The knockouts had on average a higher growth rate in minimal than the wild type').
text_representation('The knockouts had on average a higher growth rate in minimal than the wild type').
has_proposition(study_on_minimal_growthrate_conclusion,'obtain statistical mode of study_on_minimal_growthrate_result_1').
procedure('obtain statistical mode of study_on_minimal_growthrate_result_1').
text_representation('obtain statistical mode of study_on_minimal_growthrate_result_1').
has_part(study_on_minimal_growthrate,trial_on_minimal_growthrate_yer090w).
trial(trial_on_minimal_growthrate_yer090w).
has_agent(trial_on_minimal_growthrate_yer090w,yer090w).
strain(yer090w).
has_proposition(trial_on_minimal_growthrate_yer090w_1,trial_on_minimal_growthrate_yer090w_1_design).
design(trial_on_minimal_growthrate_yer090w_1_design).
has_proposition(trial_on_minimal_growthrate_yer090w_1_design,trial_on_minimal_growthrate_yer090w_1_factor).
factor(trial_on_minimal_growthrate_yer090w_1_factor).
has_representation(trial_on_minimal_growthrate_yer090w_1_factor,'presence or absence of yer090w').
has_input(trial_on_minimal_growthrate_yer090w_1,trial_on_minimal_growthrate_yer090w_1_data).
data(trial_on_minimal_growthrate_yer090w_1_data).
has_part(trial_on_minimal_growthrate_yer090w_1_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_yer090w_1_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_yer090w_1_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_yer090w_1,'nature-loop3_expt001-plate004').
plate('nature-loop3_expt001-plate004').
has_proposition(trial_on_minimal_growthrate_yer090w_1,trial_on_minimal_growthrate_yer090w_1_result).
result(trial_on_minimal_growthrate_yer090w_1_result).
has_part(trial_on_minimal_growthrate_yer090w_1_result,trial_on_minimal_growthrate_yer090w_1_result_1).
has_representation(trial_on_minimal_growthrate_yer090w_1_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_yer090w_1_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_yer090w_1_result_1,trial_on_minimal_growthrate_yer090w_1_result_1_proc).
procedure(trial_on_minimal_growthrate_yer090w_1_result_1_proc).
has_representation(trial_on_minimal_growthrate_yer090w_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_yer090w_1_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_yer090w_1_result,trial_on_minimal_growthrate_yer090w_1_result_2).
has_representation(trial_on_minimal_growthrate_yer090w_1_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_yer090w_1_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_yer090w_1_result_2,trial_on_minimal_growthrate_yer090w_1_result_2_proc).
procedure(trial_on_minimal_growthrate_yer090w_1_result_2_proc).
has_representation(trial_on_minimal_growthrate_yer090w_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_yer090w_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_yer090w_2,trial_on_minimal_growthrate_yer090w_2_design).
design(trial_on_minimal_growthrate_yer090w_2_design).
has_proposition(trial_on_minimal_growthrate_yer090w_2_design,trial_on_minimal_growthrate_yer090w_2_factor).
factor(trial_on_minimal_growthrate_yer090w_2_factor).
has_representation(trial_on_minimal_growthrate_yer090w_2_factor,'presence or absence of yer090w').
has_input(trial_on_minimal_growthrate_yer090w_2,trial_on_minimal_growthrate_yer090w_2_data).
data(trial_on_minimal_growthrate_yer090w_2_data).
has_part(trial_on_minimal_growthrate_yer090w_2_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_yer090w_2_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_yer090w_2_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_yer090w_2,'nature-loop3_expt002-plate005').
plate('nature-loop3_expt002-plate005').
has_proposition(trial_on_minimal_growthrate_yer090w_2,trial_on_minimal_growthrate_yer090w_2_result).
result(trial_on_minimal_growthrate_yer090w_2_result).
has_part(trial_on_minimal_growthrate_yer090w_2_result,trial_on_minimal_growthrate_yer090w_2_result_1).
has_representation(trial_on_minimal_growthrate_yer090w_2_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_yer090w_2_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_yer090w_2_result_1,trial_on_minimal_growthrate_yer090w_2_result_1_proc).
procedure(trial_on_minimal_growthrate_yer090w_2_result_1_proc).
has_representation(trial_on_minimal_growthrate_yer090w_2_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_yer090w_2_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_yer090w_2_result,trial_on_minimal_growthrate_yer090w_2_result_2).
has_representation(trial_on_minimal_growthrate_yer090w_2_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_yer090w_2_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_yer090w_2_result_2,trial_on_minimal_growthrate_yer090w_2_result_2_proc).
procedure(trial_on_minimal_growthrate_yer090w_2_result_2_proc).
has_representation(trial_on_minimal_growthrate_yer090w_2_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_yer090w_2_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_yer090w_3,trial_on_minimal_growthrate_yer090w_3_design).
design(trial_on_minimal_growthrate_yer090w_3_design).
has_proposition(trial_on_minimal_growthrate_yer090w_3_design,trial_on_minimal_growthrate_yer090w_3_factor).
factor(trial_on_minimal_growthrate_yer090w_3_factor).
has_representation(trial_on_minimal_growthrate_yer090w_3_factor,'presence or absence of yer090w').
has_input(trial_on_minimal_growthrate_yer090w_3,trial_on_minimal_growthrate_yer090w_3_data).
data(trial_on_minimal_growthrate_yer090w_3_data).
has_part(trial_on_minimal_growthrate_yer090w_3_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_yer090w_3_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_yer090w_3_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_yer090w_3,'nature-loop3_expt003-plate004').
plate('nature-loop3_expt003-plate004').
has_proposition(trial_on_minimal_growthrate_yer090w_3,trial_on_minimal_growthrate_yer090w_3_result).
result(trial_on_minimal_growthrate_yer090w_3_result).
has_part(trial_on_minimal_growthrate_yer090w_3_result,trial_on_minimal_growthrate_yer090w_3_result_1).
has_representation(trial_on_minimal_growthrate_yer090w_3_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_yer090w_3_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_yer090w_3_result_1,trial_on_minimal_growthrate_yer090w_3_result_1_proc).
procedure(trial_on_minimal_growthrate_yer090w_3_result_1_proc).
has_representation(trial_on_minimal_growthrate_yer090w_3_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_yer090w_3_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_yer090w_3_result,trial_on_minimal_growthrate_yer090w_3_result_2).
has_representation(trial_on_minimal_growthrate_yer090w_3_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_yer090w_3_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_yer090w_3_result_2,trial_on_minimal_growthrate_yer090w_3_result_2_proc).
procedure(trial_on_minimal_growthrate_yer090w_3_result_2_proc).
has_representation(trial_on_minimal_growthrate_yer090w_3_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_yer090w_3_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_yer090w_4,trial_on_minimal_growthrate_yer090w_4_design).
design(trial_on_minimal_growthrate_yer090w_4_design).
has_proposition(trial_on_minimal_growthrate_yer090w_4_design,trial_on_minimal_growthrate_yer090w_4_factor).
factor(trial_on_minimal_growthrate_yer090w_4_factor).
has_representation(trial_on_minimal_growthrate_yer090w_4_factor,'presence or absence of yer090w').
has_input(trial_on_minimal_growthrate_yer090w_4,trial_on_minimal_growthrate_yer090w_4_data).
data(trial_on_minimal_growthrate_yer090w_4_data).
has_part(trial_on_minimal_growthrate_yer090w_4_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_yer090w_4_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_yer090w_4_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_yer090w_4,'nature-loop3_expt004-plate005').
plate('nature-loop3_expt004-plate005').
has_proposition(trial_on_minimal_growthrate_yer090w_4,trial_on_minimal_growthrate_yer090w_4_result).
result(trial_on_minimal_growthrate_yer090w_4_result).
has_part(trial_on_minimal_growthrate_yer090w_4_result,trial_on_minimal_growthrate_yer090w_4_result_1).
has_representation(trial_on_minimal_growthrate_yer090w_4_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_yer090w_4_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_yer090w_4_result_1,trial_on_minimal_growthrate_yer090w_4_result_1_proc).
procedure(trial_on_minimal_growthrate_yer090w_4_result_1_proc).
has_representation(trial_on_minimal_growthrate_yer090w_4_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_yer090w_4_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_yer090w_4_result,trial_on_minimal_growthrate_yer090w_4_result_2).
has_representation(trial_on_minimal_growthrate_yer090w_4_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_yer090w_4_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_yer090w_4_result_2,trial_on_minimal_growthrate_yer090w_4_result_2_proc).
procedure(trial_on_minimal_growthrate_yer090w_4_result_2_proc).
has_representation(trial_on_minimal_growthrate_yer090w_4_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_yer090w_4_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
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design(trial_on_minimal_growthrate_yer090w_5_design).
has_proposition(trial_on_minimal_growthrate_yer090w_5_design,trial_on_minimal_growthrate_yer090w_5_factor).
factor(trial_on_minimal_growthrate_yer090w_5_factor).
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has_input(trial_on_minimal_growthrate_yer090w_5,trial_on_minimal_growthrate_yer090w_5_data).
data(trial_on_minimal_growthrate_yer090w_5_data).
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has_part(trial_on_minimal_growthrate_yer090w_5_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_yer090w_5_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_yer090w_5,'nature-loop3_expt005-plate005').
plate('nature-loop3_expt005-plate005').
has_proposition(trial_on_minimal_growthrate_yer090w_5,trial_on_minimal_growthrate_yer090w_5_result).
result(trial_on_minimal_growthrate_yer090w_5_result).
has_part(trial_on_minimal_growthrate_yer090w_5_result,trial_on_minimal_growthrate_yer090w_5_result_1).
has_representation(trial_on_minimal_growthrate_yer090w_5_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
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link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_yer090w_5_result_1,trial_on_minimal_growthrate_yer090w_5_result_1_proc).
procedure(trial_on_minimal_growthrate_yer090w_5_result_1_proc).
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text_representation('procedure for obtaining median').
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link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_yer090w_5_result,trial_on_minimal_growthrate_yer090w_5_result_2).
has_representation(trial_on_minimal_growthrate_yer090w_5_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
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link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_yer090w_5_result_2,trial_on_minimal_growthrate_yer090w_5_result_2_proc).
procedure(trial_on_minimal_growthrate_yer090w_5_result_2_proc).
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text_representation('procedure for obtaining median').
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link('procedures/plotWMedians.R').
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design(trial_on_minimal_growthrate_yer090w_6_design).
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factor(trial_on_minimal_growthrate_yer090w_6_factor).
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data(trial_on_minimal_growthrate_yer090w_6_data).
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has_part(trial_on_minimal_growthrate_yer090w_6_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_yer090w_6_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_yer090w_6,'nature-loop1_expt001-plate004').
plate('nature-loop1_expt001-plate004').
has_proposition(trial_on_minimal_growthrate_yer090w_6,trial_on_minimal_growthrate_yer090w_6_result).
result(trial_on_minimal_growthrate_yer090w_6_result).
has_part(trial_on_minimal_growthrate_yer090w_6_result,trial_on_minimal_growthrate_yer090w_6_result_1).
has_representation(trial_on_minimal_growthrate_yer090w_6_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_yer090w_6_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_yer090w_6_result_1,trial_on_minimal_growthrate_yer090w_6_result_1_proc).
procedure(trial_on_minimal_growthrate_yer090w_6_result_1_proc).
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text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_yer090w_6_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_yer090w_6_result,trial_on_minimal_growthrate_yer090w_6_result_2).
has_representation(trial_on_minimal_growthrate_yer090w_6_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
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link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_yer090w_6_result_2,trial_on_minimal_growthrate_yer090w_6_result_2_proc).
procedure(trial_on_minimal_growthrate_yer090w_6_result_2_proc).
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text_representation('procedure for obtaining median').
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link('procedures/plotWMedians.R').
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design(trial_on_minimal_growthrate_yer090w_7_design).
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factor(trial_on_minimal_growthrate_yer090w_7_factor).
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data(trial_on_minimal_growthrate_yer090w_7_data).
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has_part(trial_on_minimal_growthrate_yer090w_7_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_yer090w_7_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_yer090w_7,'nature-loop2_expt001-plate007').
plate('nature-loop2_expt001-plate007').
has_proposition(trial_on_minimal_growthrate_yer090w_7,trial_on_minimal_growthrate_yer090w_7_result).
result(trial_on_minimal_growthrate_yer090w_7_result).
has_part(trial_on_minimal_growthrate_yer090w_7_result,trial_on_minimal_growthrate_yer090w_7_result_1).
has_representation(trial_on_minimal_growthrate_yer090w_7_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_yer090w_7_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_yer090w_7_result_1,trial_on_minimal_growthrate_yer090w_7_result_1_proc).
procedure(trial_on_minimal_growthrate_yer090w_7_result_1_proc).
has_representation(trial_on_minimal_growthrate_yer090w_7_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_yer090w_7_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_yer090w_7_result,trial_on_minimal_growthrate_yer090w_7_result_2).
has_representation(trial_on_minimal_growthrate_yer090w_7_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_yer090w_7_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_yer090w_7_result_2,trial_on_minimal_growthrate_yer090w_7_result_2_proc).
procedure(trial_on_minimal_growthrate_yer090w_7_result_2_proc).
has_representation(trial_on_minimal_growthrate_yer090w_7_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
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link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_yer090w_8,trial_on_minimal_growthrate_yer090w_8_design).
design(trial_on_minimal_growthrate_yer090w_8_design).
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factor(trial_on_minimal_growthrate_yer090w_8_factor).
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has_input(trial_on_minimal_growthrate_yer090w_8,trial_on_minimal_growthrate_yer090w_8_data).
data(trial_on_minimal_growthrate_yer090w_8_data).
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has_part(trial_on_minimal_growthrate_yer090w_8_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_yer090w_8_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_yer090w_8,'nature-loop3_expt006-plate004').
plate('nature-loop3_expt006-plate004').
has_proposition(trial_on_minimal_growthrate_yer090w_8,trial_on_minimal_growthrate_yer090w_8_result).
result(trial_on_minimal_growthrate_yer090w_8_result).
has_part(trial_on_minimal_growthrate_yer090w_8_result,trial_on_minimal_growthrate_yer090w_8_result_1).
has_representation(trial_on_minimal_growthrate_yer090w_8_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_yer090w_8_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_yer090w_8_result_1,trial_on_minimal_growthrate_yer090w_8_result_1_proc).
procedure(trial_on_minimal_growthrate_yer090w_8_result_1_proc).
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text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_yer090w_8_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_yer090w_8_result,trial_on_minimal_growthrate_yer090w_8_result_2).
has_representation(trial_on_minimal_growthrate_yer090w_8_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
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link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_yer090w_8_result_2,trial_on_minimal_growthrate_yer090w_8_result_2_proc).
procedure(trial_on_minimal_growthrate_yer090w_8_result_2_proc).
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text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_yer090w_8_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_yer090w,trial_on_minimal_growthrate_yer090w_results).
result(trial_on_minimal_growthrate_yer090w_results).
has_part(trial_on_minimal_growthrate_yer090w_results,trial_on_minimal_growthrate_yer090w_results_1).
has_representation(trial_on_minimal_growthrate_yer090w_results_1,'median of knockout medians missing yer090w').
text_representation('median of knockout medians missing yer090w').
has_proposition(trial_on_minimal_growthrate_yer090w_results_1,trial_on_minimal_growthrate_yer090w_results_1_proc).
procedure(trial_on_minimal_growthrate_yer090w_results_1_proc).
has_proposition(trial_on_minimal_growthrate_yer090w_results_1_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_minimal_growthrate_yer090w_results,trial_on_minimal_growthrate_yer090w_results_2).
has_representation(trial_on_minimal_growthrate_yer090w_results_2,'median of wild type medians').
text_representation('median of wild type medians').
has_proposition(trial_on_minimal_growthrate_yer090w_results_2,trial_on_minimal_growthrate_yer090w_results_2_proc).
procedure(trial_on_minimal_growthrate_yer090w_results_2_proc).
has_proposition(trial_on_minimal_growthrate_yer090w_results_2_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_minimal_growthrate_yer090w_results,trial_on_minimal_growthrate_yer090w_results_3).
has_representation(trial_on_minimal_growthrate_yer090w_results_3,'difference between trial_on_minimal_growthrate_yer090w_results_1 and trial_on_minimal_growthrate_yer090w_results_2').
text_representation('difference between trial_on_minimal_growthrate_yer090w_results_1 and trial_on_minimal_growthrate_yer090w_results_2').
has_proposition(study_on_minimal_growthrate,study_on_minimal_growthrate_result).
result(study_on_minimal_growthrate_result).
has_part(study_on_minimal_growthrate_result,study_on_minimal_growthrate_result_1).
has_representation(study_on_minimal_growthrate_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_minimal_growthrate_result_1,'results/wm_km_growth_rate.csv').
link('results/wm_km_growth_rate.csv').
has_proposition(study_on_minimal_growthrate_result_1,study_on_minimal_growthrate_result_1_proc).
procedure(study_on_minimal_growthrate_result_1_proc).
has_proposition(study_on_minimal_growthrate_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_minimal_growthrate_result,study_on_minimal_growthrate_result_2).
has_representation(study_on_minimal_growthrate_result_2,'bar graph (histogram) plotting study_on_minimal_growthrate_result_1').
text_representation('bar graph (histogram) plotting study_on_minimal_growthrate_result_1').
has_proposition(study_on_minimal_growthrate_result_2,'results/km_wm_growth_rate1.tiff').
link('results/km_wm_growth_rate1.tiff').
has_proposition(study_on_minimal_growthrate_result_2,'results/km_wm_growth_rate2.tiff').
link('results/km_wm_growth_rate2.tiff').
has_proposition(study_on_minimal_growthrate_result_2,'results/overlayed_growth_rate.tiff').
link('results/overlayed_growth_rate.tiff').
has_proposition(study_on_minimal_growthrate_result_2,study_on_minimal_growthrate_result_2_proc).
procedure(study_on_minimal_growthrate_result_2_proc).
has_proposition(study_on_minimal_growthrate_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_minimal_growthrate,study_on_minimal_growthrate_conclusion).
conclusion(study_on_minimal_growthrate_conclusion).
has_representation(study_on_minimal_growthrate_conclusion,'The knockouts had on average a higher growth rate in minimal than the wild type').
text_representation('The knockouts had on average a higher growth rate in minimal than the wild type').
has_proposition(study_on_minimal_growthrate_conclusion,'obtain statistical mode of study_on_minimal_growthrate_result_1').
procedure('obtain statistical mode of study_on_minimal_growthrate_result_1').
text_representation('obtain statistical mode of study_on_minimal_growthrate_result_1').
has_part(study_on_minimal_growthrate,trial_on_minimal_growthrate_yer183c).
trial(trial_on_minimal_growthrate_yer183c).
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strain(yer183c).
has_proposition(trial_on_minimal_growthrate_yer183c_1,trial_on_minimal_growthrate_yer183c_1_design).
design(trial_on_minimal_growthrate_yer183c_1_design).
has_proposition(trial_on_minimal_growthrate_yer183c_1_design,trial_on_minimal_growthrate_yer183c_1_factor).
factor(trial_on_minimal_growthrate_yer183c_1_factor).
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has_input(trial_on_minimal_growthrate_yer183c_1,trial_on_minimal_growthrate_yer183c_1_data).
data(trial_on_minimal_growthrate_yer183c_1_data).
has_part(trial_on_minimal_growthrate_yer183c_1_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_yer183c_1_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_yer183c_1_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_yer183c_1,'feb07-trial1_expt001-plate001').
plate('feb07-trial1_expt001-plate001').
has_proposition(trial_on_minimal_growthrate_yer183c_1,trial_on_minimal_growthrate_yer183c_1_result).
result(trial_on_minimal_growthrate_yer183c_1_result).
has_part(trial_on_minimal_growthrate_yer183c_1_result,trial_on_minimal_growthrate_yer183c_1_result_1).
has_representation(trial_on_minimal_growthrate_yer183c_1_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_yer183c_1_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_yer183c_1_result_1,trial_on_minimal_growthrate_yer183c_1_result_1_proc).
procedure(trial_on_minimal_growthrate_yer183c_1_result_1_proc).
has_representation(trial_on_minimal_growthrate_yer183c_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_yer183c_1_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_yer183c_1_result,trial_on_minimal_growthrate_yer183c_1_result_2).
has_representation(trial_on_minimal_growthrate_yer183c_1_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_yer183c_1_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_yer183c_1_result_2,trial_on_minimal_growthrate_yer183c_1_result_2_proc).
procedure(trial_on_minimal_growthrate_yer183c_1_result_2_proc).
has_representation(trial_on_minimal_growthrate_yer183c_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_yer183c_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_yer183c_2,trial_on_minimal_growthrate_yer183c_2_design).
design(trial_on_minimal_growthrate_yer183c_2_design).
has_proposition(trial_on_minimal_growthrate_yer183c_2_design,trial_on_minimal_growthrate_yer183c_2_factor).
factor(trial_on_minimal_growthrate_yer183c_2_factor).
has_representation(trial_on_minimal_growthrate_yer183c_2_factor,'presence or absence of yer183c').
has_input(trial_on_minimal_growthrate_yer183c_2,trial_on_minimal_growthrate_yer183c_2_data).
data(trial_on_minimal_growthrate_yer183c_2_data).
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has_part(trial_on_minimal_growthrate_yer183c_2_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_yer183c_2_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_yer183c_2,'feb07-trial1_expt001-plate002').
plate('feb07-trial1_expt001-plate002').
has_proposition(trial_on_minimal_growthrate_yer183c_2,trial_on_minimal_growthrate_yer183c_2_result).
result(trial_on_minimal_growthrate_yer183c_2_result).
has_part(trial_on_minimal_growthrate_yer183c_2_result,trial_on_minimal_growthrate_yer183c_2_result_1).
has_representation(trial_on_minimal_growthrate_yer183c_2_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_yer183c_2_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_yer183c_2_result_1,trial_on_minimal_growthrate_yer183c_2_result_1_proc).
procedure(trial_on_minimal_growthrate_yer183c_2_result_1_proc).
has_representation(trial_on_minimal_growthrate_yer183c_2_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_yer183c_2_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_yer183c_2_result,trial_on_minimal_growthrate_yer183c_2_result_2).
has_representation(trial_on_minimal_growthrate_yer183c_2_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_yer183c_2_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_yer183c_2_result_2,trial_on_minimal_growthrate_yer183c_2_result_2_proc).
procedure(trial_on_minimal_growthrate_yer183c_2_result_2_proc).
has_representation(trial_on_minimal_growthrate_yer183c_2_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_yer183c_2_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_yer183c_3,trial_on_minimal_growthrate_yer183c_3_design).
design(trial_on_minimal_growthrate_yer183c_3_design).
has_proposition(trial_on_minimal_growthrate_yer183c_3_design,trial_on_minimal_growthrate_yer183c_3_factor).
factor(trial_on_minimal_growthrate_yer183c_3_factor).
has_representation(trial_on_minimal_growthrate_yer183c_3_factor,'presence or absence of yer183c').
has_input(trial_on_minimal_growthrate_yer183c_3,trial_on_minimal_growthrate_yer183c_3_data).
data(trial_on_minimal_growthrate_yer183c_3_data).
has_part(trial_on_minimal_growthrate_yer183c_3_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_yer183c_3_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_yer183c_3_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_yer183c_3,'feb07-trial1_expt001-plate003').
plate('feb07-trial1_expt001-plate003').
has_proposition(trial_on_minimal_growthrate_yer183c_3,trial_on_minimal_growthrate_yer183c_3_result).
result(trial_on_minimal_growthrate_yer183c_3_result).
has_part(trial_on_minimal_growthrate_yer183c_3_result,trial_on_minimal_growthrate_yer183c_3_result_1).
has_representation(trial_on_minimal_growthrate_yer183c_3_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_yer183c_3_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_yer183c_3_result_1,trial_on_minimal_growthrate_yer183c_3_result_1_proc).
procedure(trial_on_minimal_growthrate_yer183c_3_result_1_proc).
has_representation(trial_on_minimal_growthrate_yer183c_3_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_yer183c_3_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_yer183c_3_result,trial_on_minimal_growthrate_yer183c_3_result_2).
has_representation(trial_on_minimal_growthrate_yer183c_3_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_yer183c_3_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_yer183c_3_result_2,trial_on_minimal_growthrate_yer183c_3_result_2_proc).
procedure(trial_on_minimal_growthrate_yer183c_3_result_2_proc).
has_representation(trial_on_minimal_growthrate_yer183c_3_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_yer183c_3_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_yer183c_4,trial_on_minimal_growthrate_yer183c_4_design).
design(trial_on_minimal_growthrate_yer183c_4_design).
has_proposition(trial_on_minimal_growthrate_yer183c_4_design,trial_on_minimal_growthrate_yer183c_4_factor).
factor(trial_on_minimal_growthrate_yer183c_4_factor).
has_representation(trial_on_minimal_growthrate_yer183c_4_factor,'presence or absence of yer183c').
has_input(trial_on_minimal_growthrate_yer183c_4,trial_on_minimal_growthrate_yer183c_4_data).
data(trial_on_minimal_growthrate_yer183c_4_data).
has_part(trial_on_minimal_growthrate_yer183c_4_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_yer183c_4_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_yer183c_4_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_yer183c_4,'feb07-trial1_expt001-plate004').
plate('feb07-trial1_expt001-plate004').
has_proposition(trial_on_minimal_growthrate_yer183c_4,trial_on_minimal_growthrate_yer183c_4_result).
result(trial_on_minimal_growthrate_yer183c_4_result).
has_part(trial_on_minimal_growthrate_yer183c_4_result,trial_on_minimal_growthrate_yer183c_4_result_1).
has_representation(trial_on_minimal_growthrate_yer183c_4_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_yer183c_4_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_yer183c_4_result_1,trial_on_minimal_growthrate_yer183c_4_result_1_proc).
procedure(trial_on_minimal_growthrate_yer183c_4_result_1_proc).
has_representation(trial_on_minimal_growthrate_yer183c_4_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_yer183c_4_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_yer183c_4_result,trial_on_minimal_growthrate_yer183c_4_result_2).
has_representation(trial_on_minimal_growthrate_yer183c_4_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_yer183c_4_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_yer183c_4_result_2,trial_on_minimal_growthrate_yer183c_4_result_2_proc).
procedure(trial_on_minimal_growthrate_yer183c_4_result_2_proc).
has_representation(trial_on_minimal_growthrate_yer183c_4_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_yer183c_4_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_yer183c,trial_on_minimal_growthrate_yer183c_results).
result(trial_on_minimal_growthrate_yer183c_results).
has_part(trial_on_minimal_growthrate_yer183c_results,trial_on_minimal_growthrate_yer183c_results_1).
has_representation(trial_on_minimal_growthrate_yer183c_results_1,'median of knockout medians missing yer183c').
text_representation('median of knockout medians missing yer183c').
has_proposition(trial_on_minimal_growthrate_yer183c_results_1,trial_on_minimal_growthrate_yer183c_results_1_proc).
procedure(trial_on_minimal_growthrate_yer183c_results_1_proc).
has_proposition(trial_on_minimal_growthrate_yer183c_results_1_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_minimal_growthrate_yer183c_results,trial_on_minimal_growthrate_yer183c_results_2).
has_representation(trial_on_minimal_growthrate_yer183c_results_2,'median of wild type medians').
text_representation('median of wild type medians').
has_proposition(trial_on_minimal_growthrate_yer183c_results_2,trial_on_minimal_growthrate_yer183c_results_2_proc).
procedure(trial_on_minimal_growthrate_yer183c_results_2_proc).
has_proposition(trial_on_minimal_growthrate_yer183c_results_2_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_minimal_growthrate_yer183c_results,trial_on_minimal_growthrate_yer183c_results_3).
has_representation(trial_on_minimal_growthrate_yer183c_results_3,'difference between trial_on_minimal_growthrate_yer183c_results_1 and trial_on_minimal_growthrate_yer183c_results_2').
text_representation('difference between trial_on_minimal_growthrate_yer183c_results_1 and trial_on_minimal_growthrate_yer183c_results_2').
has_proposition(study_on_minimal_growthrate,study_on_minimal_growthrate_result).
result(study_on_minimal_growthrate_result).
has_part(study_on_minimal_growthrate_result,study_on_minimal_growthrate_result_1).
has_representation(study_on_minimal_growthrate_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_minimal_growthrate_result_1,'results/wm_km_growth_rate.csv').
link('results/wm_km_growth_rate.csv').
has_proposition(study_on_minimal_growthrate_result_1,study_on_minimal_growthrate_result_1_proc).
procedure(study_on_minimal_growthrate_result_1_proc).
has_proposition(study_on_minimal_growthrate_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_minimal_growthrate_result,study_on_minimal_growthrate_result_2).
has_representation(study_on_minimal_growthrate_result_2,'bar graph (histogram) plotting study_on_minimal_growthrate_result_1').
text_representation('bar graph (histogram) plotting study_on_minimal_growthrate_result_1').
has_proposition(study_on_minimal_growthrate_result_2,'results/km_wm_growth_rate1.tiff').
link('results/km_wm_growth_rate1.tiff').
has_proposition(study_on_minimal_growthrate_result_2,'results/km_wm_growth_rate2.tiff').
link('results/km_wm_growth_rate2.tiff').
has_proposition(study_on_minimal_growthrate_result_2,'results/overlayed_growth_rate.tiff').
link('results/overlayed_growth_rate.tiff').
has_proposition(study_on_minimal_growthrate_result_2,study_on_minimal_growthrate_result_2_proc).
procedure(study_on_minimal_growthrate_result_2_proc).
has_proposition(study_on_minimal_growthrate_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_minimal_growthrate,study_on_minimal_growthrate_conclusion).
conclusion(study_on_minimal_growthrate_conclusion).
has_representation(study_on_minimal_growthrate_conclusion,'The knockouts had on average a higher growth rate in minimal than the wild type').
text_representation('The knockouts had on average a higher growth rate in minimal than the wild type').
has_proposition(study_on_minimal_growthrate_conclusion,'obtain statistical mode of study_on_minimal_growthrate_result_1').
procedure('obtain statistical mode of study_on_minimal_growthrate_result_1').
text_representation('obtain statistical mode of study_on_minimal_growthrate_result_1').
has_part(study_on_minimal_growthrate,trial_on_minimal_growthrate_yjl045w).
trial(trial_on_minimal_growthrate_yjl045w).
has_agent(trial_on_minimal_growthrate_yjl045w,yjl045w).
strain(yjl045w).
has_proposition(trial_on_minimal_growthrate_yjl045w_1,trial_on_minimal_growthrate_yjl045w_1_design).
design(trial_on_minimal_growthrate_yjl045w_1_design).
has_proposition(trial_on_minimal_growthrate_yjl045w_1_design,trial_on_minimal_growthrate_yjl045w_1_factor).
factor(trial_on_minimal_growthrate_yjl045w_1_factor).
has_representation(trial_on_minimal_growthrate_yjl045w_1_factor,'presence or absence of yjl045w').
has_input(trial_on_minimal_growthrate_yjl045w_1,trial_on_minimal_growthrate_yjl045w_1_data).
data(trial_on_minimal_growthrate_yjl045w_1_data).
has_part(trial_on_minimal_growthrate_yjl045w_1_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_yjl045w_1_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_yjl045w_1_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_yjl045w_1,'mar07-trial7_expt001-plate001').
plate('mar07-trial7_expt001-plate001').
has_proposition(trial_on_minimal_growthrate_yjl045w_1,trial_on_minimal_growthrate_yjl045w_1_result).
result(trial_on_minimal_growthrate_yjl045w_1_result).
has_part(trial_on_minimal_growthrate_yjl045w_1_result,trial_on_minimal_growthrate_yjl045w_1_result_1).
has_representation(trial_on_minimal_growthrate_yjl045w_1_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_yjl045w_1_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_yjl045w_1_result_1,trial_on_minimal_growthrate_yjl045w_1_result_1_proc).
procedure(trial_on_minimal_growthrate_yjl045w_1_result_1_proc).
has_representation(trial_on_minimal_growthrate_yjl045w_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_yjl045w_1_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_yjl045w_1_result,trial_on_minimal_growthrate_yjl045w_1_result_2).
has_representation(trial_on_minimal_growthrate_yjl045w_1_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_yjl045w_1_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_yjl045w_1_result_2,trial_on_minimal_growthrate_yjl045w_1_result_2_proc).
procedure(trial_on_minimal_growthrate_yjl045w_1_result_2_proc).
has_representation(trial_on_minimal_growthrate_yjl045w_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_yjl045w_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_yjl045w,trial_on_minimal_growthrate_yjl045w_results).
result(trial_on_minimal_growthrate_yjl045w_results).
has_part(trial_on_minimal_growthrate_yjl045w_results,trial_on_minimal_growthrate_yjl045w_results_1).
has_representation(trial_on_minimal_growthrate_yjl045w_results_1,'median of knockout medians missing yjl045w').
text_representation('median of knockout medians missing yjl045w').
has_proposition(trial_on_minimal_growthrate_yjl045w_results_1,trial_on_minimal_growthrate_yjl045w_results_1_proc).
procedure(trial_on_minimal_growthrate_yjl045w_results_1_proc).
has_proposition(trial_on_minimal_growthrate_yjl045w_results_1_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_minimal_growthrate_yjl045w_results,trial_on_minimal_growthrate_yjl045w_results_2).
has_representation(trial_on_minimal_growthrate_yjl045w_results_2,'median of wild type medians').
text_representation('median of wild type medians').
has_proposition(trial_on_minimal_growthrate_yjl045w_results_2,trial_on_minimal_growthrate_yjl045w_results_2_proc).
procedure(trial_on_minimal_growthrate_yjl045w_results_2_proc).
has_proposition(trial_on_minimal_growthrate_yjl045w_results_2_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_minimal_growthrate_yjl045w_results,trial_on_minimal_growthrate_yjl045w_results_3).
has_representation(trial_on_minimal_growthrate_yjl045w_results_3,'difference between trial_on_minimal_growthrate_yjl045w_results_1 and trial_on_minimal_growthrate_yjl045w_results_2').
text_representation('difference between trial_on_minimal_growthrate_yjl045w_results_1 and trial_on_minimal_growthrate_yjl045w_results_2').
has_proposition(study_on_minimal_growthrate,study_on_minimal_growthrate_result).
result(study_on_minimal_growthrate_result).
has_part(study_on_minimal_growthrate_result,study_on_minimal_growthrate_result_1).
has_representation(study_on_minimal_growthrate_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_minimal_growthrate_result_1,'results/wm_km_growth_rate.csv').
link('results/wm_km_growth_rate.csv').
has_proposition(study_on_minimal_growthrate_result_1,study_on_minimal_growthrate_result_1_proc).
procedure(study_on_minimal_growthrate_result_1_proc).
has_proposition(study_on_minimal_growthrate_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_minimal_growthrate_result,study_on_minimal_growthrate_result_2).
has_representation(study_on_minimal_growthrate_result_2,'bar graph (histogram) plotting study_on_minimal_growthrate_result_1').
text_representation('bar graph (histogram) plotting study_on_minimal_growthrate_result_1').
has_proposition(study_on_minimal_growthrate_result_2,'results/km_wm_growth_rate1.tiff').
link('results/km_wm_growth_rate1.tiff').
has_proposition(study_on_minimal_growthrate_result_2,'results/km_wm_growth_rate2.tiff').
link('results/km_wm_growth_rate2.tiff').
has_proposition(study_on_minimal_growthrate_result_2,'results/overlayed_growth_rate.tiff').
link('results/overlayed_growth_rate.tiff').
has_proposition(study_on_minimal_growthrate_result_2,study_on_minimal_growthrate_result_2_proc).
procedure(study_on_minimal_growthrate_result_2_proc).
has_proposition(study_on_minimal_growthrate_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_minimal_growthrate,study_on_minimal_growthrate_conclusion).
conclusion(study_on_minimal_growthrate_conclusion).
has_representation(study_on_minimal_growthrate_conclusion,'The knockouts had on average a higher growth rate in minimal than the wild type').
text_representation('The knockouts had on average a higher growth rate in minimal than the wild type').
has_proposition(study_on_minimal_growthrate_conclusion,'obtain statistical mode of study_on_minimal_growthrate_result_1').
procedure('obtain statistical mode of study_on_minimal_growthrate_result_1').
text_representation('obtain statistical mode of study_on_minimal_growthrate_result_1').
has_part(study_on_minimal_growthrate,trial_on_minimal_growthrate_ynl316c).
trial(trial_on_minimal_growthrate_ynl316c).
has_agent(trial_on_minimal_growthrate_ynl316c,ynl316c).
strain(ynl316c).
has_proposition(trial_on_minimal_growthrate_ynl316c_1,trial_on_minimal_growthrate_ynl316c_1_design).
design(trial_on_minimal_growthrate_ynl316c_1_design).
has_proposition(trial_on_minimal_growthrate_ynl316c_1_design,trial_on_minimal_growthrate_ynl316c_1_factor).
factor(trial_on_minimal_growthrate_ynl316c_1_factor).
has_representation(trial_on_minimal_growthrate_ynl316c_1_factor,'presence or absence of ynl316c').
has_input(trial_on_minimal_growthrate_ynl316c_1,trial_on_minimal_growthrate_ynl316c_1_data).
data(trial_on_minimal_growthrate_ynl316c_1_data).
has_part(trial_on_minimal_growthrate_ynl316c_1_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_ynl316c_1_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_ynl316c_1_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_ynl316c_1,'nature-loop3_expt001-plate001').
plate('nature-loop3_expt001-plate001').
has_proposition(trial_on_minimal_growthrate_ynl316c_1,trial_on_minimal_growthrate_ynl316c_1_result).
result(trial_on_minimal_growthrate_ynl316c_1_result).
has_part(trial_on_minimal_growthrate_ynl316c_1_result,trial_on_minimal_growthrate_ynl316c_1_result_1).
has_representation(trial_on_minimal_growthrate_ynl316c_1_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_ynl316c_1_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_ynl316c_1_result_1,trial_on_minimal_growthrate_ynl316c_1_result_1_proc).
procedure(trial_on_minimal_growthrate_ynl316c_1_result_1_proc).
has_representation(trial_on_minimal_growthrate_ynl316c_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ynl316c_1_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_ynl316c_1_result,trial_on_minimal_growthrate_ynl316c_1_result_2).
has_representation(trial_on_minimal_growthrate_ynl316c_1_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_ynl316c_1_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_ynl316c_1_result_2,trial_on_minimal_growthrate_ynl316c_1_result_2_proc).
procedure(trial_on_minimal_growthrate_ynl316c_1_result_2_proc).
has_representation(trial_on_minimal_growthrate_ynl316c_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ynl316c_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_ynl316c_2,trial_on_minimal_growthrate_ynl316c_2_design).
design(trial_on_minimal_growthrate_ynl316c_2_design).
has_proposition(trial_on_minimal_growthrate_ynl316c_2_design,trial_on_minimal_growthrate_ynl316c_2_factor).
factor(trial_on_minimal_growthrate_ynl316c_2_factor).
has_representation(trial_on_minimal_growthrate_ynl316c_2_factor,'presence or absence of ynl316c').
has_input(trial_on_minimal_growthrate_ynl316c_2,trial_on_minimal_growthrate_ynl316c_2_data).
data(trial_on_minimal_growthrate_ynl316c_2_data).
has_part(trial_on_minimal_growthrate_ynl316c_2_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_ynl316c_2_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_ynl316c_2_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_ynl316c_2,'nature-loop3_expt002-plate008').
plate('nature-loop3_expt002-plate008').
has_proposition(trial_on_minimal_growthrate_ynl316c_2,trial_on_minimal_growthrate_ynl316c_2_result).
result(trial_on_minimal_growthrate_ynl316c_2_result).
has_part(trial_on_minimal_growthrate_ynl316c_2_result,trial_on_minimal_growthrate_ynl316c_2_result_1).
has_representation(trial_on_minimal_growthrate_ynl316c_2_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_ynl316c_2_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_ynl316c_2_result_1,trial_on_minimal_growthrate_ynl316c_2_result_1_proc).
procedure(trial_on_minimal_growthrate_ynl316c_2_result_1_proc).
has_representation(trial_on_minimal_growthrate_ynl316c_2_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ynl316c_2_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_ynl316c_2_result,trial_on_minimal_growthrate_ynl316c_2_result_2).
has_representation(trial_on_minimal_growthrate_ynl316c_2_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_ynl316c_2_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_ynl316c_2_result_2,trial_on_minimal_growthrate_ynl316c_2_result_2_proc).
procedure(trial_on_minimal_growthrate_ynl316c_2_result_2_proc).
has_representation(trial_on_minimal_growthrate_ynl316c_2_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ynl316c_2_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_ynl316c_3,trial_on_minimal_growthrate_ynl316c_3_design).
design(trial_on_minimal_growthrate_ynl316c_3_design).
has_proposition(trial_on_minimal_growthrate_ynl316c_3_design,trial_on_minimal_growthrate_ynl316c_3_factor).
factor(trial_on_minimal_growthrate_ynl316c_3_factor).
has_representation(trial_on_minimal_growthrate_ynl316c_3_factor,'presence or absence of ynl316c').
has_input(trial_on_minimal_growthrate_ynl316c_3,trial_on_minimal_growthrate_ynl316c_3_data).
data(trial_on_minimal_growthrate_ynl316c_3_data).
has_part(trial_on_minimal_growthrate_ynl316c_3_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_ynl316c_3_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_ynl316c_3_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_ynl316c_3,'nature-loop3_expt003-plate001').
plate('nature-loop3_expt003-plate001').
has_proposition(trial_on_minimal_growthrate_ynl316c_3,trial_on_minimal_growthrate_ynl316c_3_result).
result(trial_on_minimal_growthrate_ynl316c_3_result).
has_part(trial_on_minimal_growthrate_ynl316c_3_result,trial_on_minimal_growthrate_ynl316c_3_result_1).
has_representation(trial_on_minimal_growthrate_ynl316c_3_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_ynl316c_3_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_ynl316c_3_result_1,trial_on_minimal_growthrate_ynl316c_3_result_1_proc).
procedure(trial_on_minimal_growthrate_ynl316c_3_result_1_proc).
has_representation(trial_on_minimal_growthrate_ynl316c_3_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ynl316c_3_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_ynl316c_3_result,trial_on_minimal_growthrate_ynl316c_3_result_2).
has_representation(trial_on_minimal_growthrate_ynl316c_3_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_ynl316c_3_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_ynl316c_3_result_2,trial_on_minimal_growthrate_ynl316c_3_result_2_proc).
procedure(trial_on_minimal_growthrate_ynl316c_3_result_2_proc).
has_representation(trial_on_minimal_growthrate_ynl316c_3_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ynl316c_3_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_ynl316c_4,trial_on_minimal_growthrate_ynl316c_4_design).
design(trial_on_minimal_growthrate_ynl316c_4_design).
has_proposition(trial_on_minimal_growthrate_ynl316c_4_design,trial_on_minimal_growthrate_ynl316c_4_factor).
factor(trial_on_minimal_growthrate_ynl316c_4_factor).
has_representation(trial_on_minimal_growthrate_ynl316c_4_factor,'presence or absence of ynl316c').
has_input(trial_on_minimal_growthrate_ynl316c_4,trial_on_minimal_growthrate_ynl316c_4_data).
data(trial_on_minimal_growthrate_ynl316c_4_data).
has_part(trial_on_minimal_growthrate_ynl316c_4_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_ynl316c_4_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_ynl316c_4_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_ynl316c_4,'nature-loop3_expt004-plate008').
plate('nature-loop3_expt004-plate008').
has_proposition(trial_on_minimal_growthrate_ynl316c_4,trial_on_minimal_growthrate_ynl316c_4_result).
result(trial_on_minimal_growthrate_ynl316c_4_result).
has_part(trial_on_minimal_growthrate_ynl316c_4_result,trial_on_minimal_growthrate_ynl316c_4_result_1).
has_representation(trial_on_minimal_growthrate_ynl316c_4_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_ynl316c_4_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_ynl316c_4_result_1,trial_on_minimal_growthrate_ynl316c_4_result_1_proc).
procedure(trial_on_minimal_growthrate_ynl316c_4_result_1_proc).
has_representation(trial_on_minimal_growthrate_ynl316c_4_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ynl316c_4_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_ynl316c_4_result,trial_on_minimal_growthrate_ynl316c_4_result_2).
has_representation(trial_on_minimal_growthrate_ynl316c_4_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_ynl316c_4_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_ynl316c_4_result_2,trial_on_minimal_growthrate_ynl316c_4_result_2_proc).
procedure(trial_on_minimal_growthrate_ynl316c_4_result_2_proc).
has_representation(trial_on_minimal_growthrate_ynl316c_4_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ynl316c_4_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_ynl316c_5,trial_on_minimal_growthrate_ynl316c_5_design).
design(trial_on_minimal_growthrate_ynl316c_5_design).
has_proposition(trial_on_minimal_growthrate_ynl316c_5_design,trial_on_minimal_growthrate_ynl316c_5_factor).
factor(trial_on_minimal_growthrate_ynl316c_5_factor).
has_representation(trial_on_minimal_growthrate_ynl316c_5_factor,'presence or absence of ynl316c').
has_input(trial_on_minimal_growthrate_ynl316c_5,trial_on_minimal_growthrate_ynl316c_5_data).
data(trial_on_minimal_growthrate_ynl316c_5_data).
has_part(trial_on_minimal_growthrate_ynl316c_5_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_ynl316c_5_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_ynl316c_5_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_ynl316c_5,'nature-loop3_expt005-plate008').
plate('nature-loop3_expt005-plate008').
has_proposition(trial_on_minimal_growthrate_ynl316c_5,trial_on_minimal_growthrate_ynl316c_5_result).
result(trial_on_minimal_growthrate_ynl316c_5_result).
has_part(trial_on_minimal_growthrate_ynl316c_5_result,trial_on_minimal_growthrate_ynl316c_5_result_1).
has_representation(trial_on_minimal_growthrate_ynl316c_5_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_ynl316c_5_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_ynl316c_5_result_1,trial_on_minimal_growthrate_ynl316c_5_result_1_proc).
procedure(trial_on_minimal_growthrate_ynl316c_5_result_1_proc).
has_representation(trial_on_minimal_growthrate_ynl316c_5_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ynl316c_5_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_ynl316c_5_result,trial_on_minimal_growthrate_ynl316c_5_result_2).
has_representation(trial_on_minimal_growthrate_ynl316c_5_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_ynl316c_5_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_ynl316c_5_result_2,trial_on_minimal_growthrate_ynl316c_5_result_2_proc).
procedure(trial_on_minimal_growthrate_ynl316c_5_result_2_proc).
has_representation(trial_on_minimal_growthrate_ynl316c_5_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ynl316c_5_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_ynl316c_6,trial_on_minimal_growthrate_ynl316c_6_design).
design(trial_on_minimal_growthrate_ynl316c_6_design).
has_proposition(trial_on_minimal_growthrate_ynl316c_6_design,trial_on_minimal_growthrate_ynl316c_6_factor).
factor(trial_on_minimal_growthrate_ynl316c_6_factor).
has_representation(trial_on_minimal_growthrate_ynl316c_6_factor,'presence or absence of ynl316c').
has_input(trial_on_minimal_growthrate_ynl316c_6,trial_on_minimal_growthrate_ynl316c_6_data).
data(trial_on_minimal_growthrate_ynl316c_6_data).
has_part(trial_on_minimal_growthrate_ynl316c_6_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_ynl316c_6_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_ynl316c_6_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_ynl316c_6,'nature-loop1_expt001-plate001').
plate('nature-loop1_expt001-plate001').
has_proposition(trial_on_minimal_growthrate_ynl316c_6,trial_on_minimal_growthrate_ynl316c_6_result).
result(trial_on_minimal_growthrate_ynl316c_6_result).
has_part(trial_on_minimal_growthrate_ynl316c_6_result,trial_on_minimal_growthrate_ynl316c_6_result_1).
has_representation(trial_on_minimal_growthrate_ynl316c_6_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_ynl316c_6_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_ynl316c_6_result_1,trial_on_minimal_growthrate_ynl316c_6_result_1_proc).
procedure(trial_on_minimal_growthrate_ynl316c_6_result_1_proc).
has_representation(trial_on_minimal_growthrate_ynl316c_6_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ynl316c_6_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_ynl316c_6_result,trial_on_minimal_growthrate_ynl316c_6_result_2).
has_representation(trial_on_minimal_growthrate_ynl316c_6_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_ynl316c_6_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_ynl316c_6_result_2,trial_on_minimal_growthrate_ynl316c_6_result_2_proc).
procedure(trial_on_minimal_growthrate_ynl316c_6_result_2_proc).
has_representation(trial_on_minimal_growthrate_ynl316c_6_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ynl316c_6_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_ynl316c_7,trial_on_minimal_growthrate_ynl316c_7_design).
design(trial_on_minimal_growthrate_ynl316c_7_design).
has_proposition(trial_on_minimal_growthrate_ynl316c_7_design,trial_on_minimal_growthrate_ynl316c_7_factor).
factor(trial_on_minimal_growthrate_ynl316c_7_factor).
has_representation(trial_on_minimal_growthrate_ynl316c_7_factor,'presence or absence of ynl316c').
has_input(trial_on_minimal_growthrate_ynl316c_7,trial_on_minimal_growthrate_ynl316c_7_data).
data(trial_on_minimal_growthrate_ynl316c_7_data).
has_part(trial_on_minimal_growthrate_ynl316c_7_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_ynl316c_7_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_ynl316c_7_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_ynl316c_7,'nature-loop2_expt001-plate008').
plate('nature-loop2_expt001-plate008').
has_proposition(trial_on_minimal_growthrate_ynl316c_7,trial_on_minimal_growthrate_ynl316c_7_result).
result(trial_on_minimal_growthrate_ynl316c_7_result).
has_part(trial_on_minimal_growthrate_ynl316c_7_result,trial_on_minimal_growthrate_ynl316c_7_result_1).
has_representation(trial_on_minimal_growthrate_ynl316c_7_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_ynl316c_7_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_ynl316c_7_result_1,trial_on_minimal_growthrate_ynl316c_7_result_1_proc).
procedure(trial_on_minimal_growthrate_ynl316c_7_result_1_proc).
has_representation(trial_on_minimal_growthrate_ynl316c_7_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ynl316c_7_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_ynl316c_7_result,trial_on_minimal_growthrate_ynl316c_7_result_2).
has_representation(trial_on_minimal_growthrate_ynl316c_7_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_ynl316c_7_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_ynl316c_7_result_2,trial_on_minimal_growthrate_ynl316c_7_result_2_proc).
procedure(trial_on_minimal_growthrate_ynl316c_7_result_2_proc).
has_representation(trial_on_minimal_growthrate_ynl316c_7_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ynl316c_7_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_ynl316c_8,trial_on_minimal_growthrate_ynl316c_8_design).
design(trial_on_minimal_growthrate_ynl316c_8_design).
has_proposition(trial_on_minimal_growthrate_ynl316c_8_design,trial_on_minimal_growthrate_ynl316c_8_factor).
factor(trial_on_minimal_growthrate_ynl316c_8_factor).
has_representation(trial_on_minimal_growthrate_ynl316c_8_factor,'presence or absence of ynl316c').
has_input(trial_on_minimal_growthrate_ynl316c_8,trial_on_minimal_growthrate_ynl316c_8_data).
data(trial_on_minimal_growthrate_ynl316c_8_data).
has_part(trial_on_minimal_growthrate_ynl316c_8_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_ynl316c_8_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_ynl316c_8_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_ynl316c_8,'nature-loop3_expt006-plate007').
plate('nature-loop3_expt006-plate007').
has_proposition(trial_on_minimal_growthrate_ynl316c_8,trial_on_minimal_growthrate_ynl316c_8_result).
result(trial_on_minimal_growthrate_ynl316c_8_result).
has_part(trial_on_minimal_growthrate_ynl316c_8_result,trial_on_minimal_growthrate_ynl316c_8_result_1).
has_representation(trial_on_minimal_growthrate_ynl316c_8_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_ynl316c_8_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_ynl316c_8_result_1,trial_on_minimal_growthrate_ynl316c_8_result_1_proc).
procedure(trial_on_minimal_growthrate_ynl316c_8_result_1_proc).
has_representation(trial_on_minimal_growthrate_ynl316c_8_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ynl316c_8_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_ynl316c_8_result,trial_on_minimal_growthrate_ynl316c_8_result_2).
has_representation(trial_on_minimal_growthrate_ynl316c_8_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_ynl316c_8_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_ynl316c_8_result_2,trial_on_minimal_growthrate_ynl316c_8_result_2_proc).
procedure(trial_on_minimal_growthrate_ynl316c_8_result_2_proc).
has_representation(trial_on_minimal_growthrate_ynl316c_8_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ynl316c_8_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_ynl316c,trial_on_minimal_growthrate_ynl316c_results).
result(trial_on_minimal_growthrate_ynl316c_results).
has_part(trial_on_minimal_growthrate_ynl316c_results,trial_on_minimal_growthrate_ynl316c_results_1).
has_representation(trial_on_minimal_growthrate_ynl316c_results_1,'median of knockout medians missing ynl316c').
text_representation('median of knockout medians missing ynl316c').
has_proposition(trial_on_minimal_growthrate_ynl316c_results_1,trial_on_minimal_growthrate_ynl316c_results_1_proc).
procedure(trial_on_minimal_growthrate_ynl316c_results_1_proc).
has_proposition(trial_on_minimal_growthrate_ynl316c_results_1_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_minimal_growthrate_ynl316c_results,trial_on_minimal_growthrate_ynl316c_results_2).
has_representation(trial_on_minimal_growthrate_ynl316c_results_2,'median of wild type medians').
text_representation('median of wild type medians').
has_proposition(trial_on_minimal_growthrate_ynl316c_results_2,trial_on_minimal_growthrate_ynl316c_results_2_proc).
procedure(trial_on_minimal_growthrate_ynl316c_results_2_proc).
has_proposition(trial_on_minimal_growthrate_ynl316c_results_2_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_minimal_growthrate_ynl316c_results,trial_on_minimal_growthrate_ynl316c_results_3).
has_representation(trial_on_minimal_growthrate_ynl316c_results_3,'difference between trial_on_minimal_growthrate_ynl316c_results_1 and trial_on_minimal_growthrate_ynl316c_results_2').
text_representation('difference between trial_on_minimal_growthrate_ynl316c_results_1 and trial_on_minimal_growthrate_ynl316c_results_2').
has_proposition(study_on_minimal_growthrate,study_on_minimal_growthrate_result).
result(study_on_minimal_growthrate_result).
has_part(study_on_minimal_growthrate_result,study_on_minimal_growthrate_result_1).
has_representation(study_on_minimal_growthrate_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_minimal_growthrate_result_1,'results/wm_km_growth_rate.csv').
link('results/wm_km_growth_rate.csv').
has_proposition(study_on_minimal_growthrate_result_1,study_on_minimal_growthrate_result_1_proc).
procedure(study_on_minimal_growthrate_result_1_proc).
has_proposition(study_on_minimal_growthrate_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_minimal_growthrate_result,study_on_minimal_growthrate_result_2).
has_representation(study_on_minimal_growthrate_result_2,'bar graph (histogram) plotting study_on_minimal_growthrate_result_1').
text_representation('bar graph (histogram) plotting study_on_minimal_growthrate_result_1').
has_proposition(study_on_minimal_growthrate_result_2,'results/km_wm_growth_rate1.tiff').
link('results/km_wm_growth_rate1.tiff').
has_proposition(study_on_minimal_growthrate_result_2,'results/km_wm_growth_rate2.tiff').
link('results/km_wm_growth_rate2.tiff').
has_proposition(study_on_minimal_growthrate_result_2,'results/overlayed_growth_rate.tiff').
link('results/overlayed_growth_rate.tiff').
has_proposition(study_on_minimal_growthrate_result_2,study_on_minimal_growthrate_result_2_proc).
procedure(study_on_minimal_growthrate_result_2_proc).
has_proposition(study_on_minimal_growthrate_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_minimal_growthrate,study_on_minimal_growthrate_conclusion).
conclusion(study_on_minimal_growthrate_conclusion).
has_representation(study_on_minimal_growthrate_conclusion,'The knockouts had on average a higher growth rate in minimal than the wild type').
text_representation('The knockouts had on average a higher growth rate in minimal than the wild type').
has_proposition(study_on_minimal_growthrate_conclusion,'obtain statistical mode of study_on_minimal_growthrate_result_1').
procedure('obtain statistical mode of study_on_minimal_growthrate_result_1').
text_representation('obtain statistical mode of study_on_minimal_growthrate_result_1').
has_part(study_on_minimal_growthrate,trial_on_minimal_growthrate_ydl052c).
trial(trial_on_minimal_growthrate_ydl052c).
has_agent(trial_on_minimal_growthrate_ydl052c,ydl052c).
strain(ydl052c).
has_proposition(trial_on_minimal_growthrate_ydl052c_1,trial_on_minimal_growthrate_ydl052c_1_design).
design(trial_on_minimal_growthrate_ydl052c_1_design).
has_proposition(trial_on_minimal_growthrate_ydl052c_1_design,trial_on_minimal_growthrate_ydl052c_1_factor).
factor(trial_on_minimal_growthrate_ydl052c_1_factor).
has_representation(trial_on_minimal_growthrate_ydl052c_1_factor,'presence or absence of ydl052c').
has_input(trial_on_minimal_growthrate_ydl052c_1,trial_on_minimal_growthrate_ydl052c_1_data).
data(trial_on_minimal_growthrate_ydl052c_1_data).
has_part(trial_on_minimal_growthrate_ydl052c_1_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_ydl052c_1_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_ydl052c_1_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_ydl052c_1,'feb07-trial1_expt001-plate010').
plate('feb07-trial1_expt001-plate010').
has_proposition(trial_on_minimal_growthrate_ydl052c_1,trial_on_minimal_growthrate_ydl052c_1_result).
result(trial_on_minimal_growthrate_ydl052c_1_result).
has_part(trial_on_minimal_growthrate_ydl052c_1_result,trial_on_minimal_growthrate_ydl052c_1_result_1).
has_representation(trial_on_minimal_growthrate_ydl052c_1_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_ydl052c_1_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_ydl052c_1_result_1,trial_on_minimal_growthrate_ydl052c_1_result_1_proc).
procedure(trial_on_minimal_growthrate_ydl052c_1_result_1_proc).
has_representation(trial_on_minimal_growthrate_ydl052c_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ydl052c_1_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_ydl052c_1_result,trial_on_minimal_growthrate_ydl052c_1_result_2).
has_representation(trial_on_minimal_growthrate_ydl052c_1_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_ydl052c_1_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_ydl052c_1_result_2,trial_on_minimal_growthrate_ydl052c_1_result_2_proc).
procedure(trial_on_minimal_growthrate_ydl052c_1_result_2_proc).
has_representation(trial_on_minimal_growthrate_ydl052c_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ydl052c_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_ydl052c_2,trial_on_minimal_growthrate_ydl052c_2_design).
design(trial_on_minimal_growthrate_ydl052c_2_design).
has_proposition(trial_on_minimal_growthrate_ydl052c_2_design,trial_on_minimal_growthrate_ydl052c_2_factor).
factor(trial_on_minimal_growthrate_ydl052c_2_factor).
has_representation(trial_on_minimal_growthrate_ydl052c_2_factor,'presence or absence of ydl052c').
has_input(trial_on_minimal_growthrate_ydl052c_2,trial_on_minimal_growthrate_ydl052c_2_data).
data(trial_on_minimal_growthrate_ydl052c_2_data).
has_part(trial_on_minimal_growthrate_ydl052c_2_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_ydl052c_2_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_ydl052c_2_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_ydl052c_2,'mar07-trial7_expt001-plate007').
plate('mar07-trial7_expt001-plate007').
has_proposition(trial_on_minimal_growthrate_ydl052c_2,trial_on_minimal_growthrate_ydl052c_2_result).
result(trial_on_minimal_growthrate_ydl052c_2_result).
has_part(trial_on_minimal_growthrate_ydl052c_2_result,trial_on_minimal_growthrate_ydl052c_2_result_1).
has_representation(trial_on_minimal_growthrate_ydl052c_2_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_ydl052c_2_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_ydl052c_2_result_1,trial_on_minimal_growthrate_ydl052c_2_result_1_proc).
procedure(trial_on_minimal_growthrate_ydl052c_2_result_1_proc).
has_representation(trial_on_minimal_growthrate_ydl052c_2_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ydl052c_2_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_ydl052c_2_result,trial_on_minimal_growthrate_ydl052c_2_result_2).
has_representation(trial_on_minimal_growthrate_ydl052c_2_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_ydl052c_2_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_ydl052c_2_result_2,trial_on_minimal_growthrate_ydl052c_2_result_2_proc).
procedure(trial_on_minimal_growthrate_ydl052c_2_result_2_proc).
has_representation(trial_on_minimal_growthrate_ydl052c_2_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ydl052c_2_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_ydl052c_3,trial_on_minimal_growthrate_ydl052c_3_design).
design(trial_on_minimal_growthrate_ydl052c_3_design).
has_proposition(trial_on_minimal_growthrate_ydl052c_3_design,trial_on_minimal_growthrate_ydl052c_3_factor).
factor(trial_on_minimal_growthrate_ydl052c_3_factor).
has_representation(trial_on_minimal_growthrate_ydl052c_3_factor,'presence or absence of ydl052c').
has_input(trial_on_minimal_growthrate_ydl052c_3,trial_on_minimal_growthrate_ydl052c_3_data).
data(trial_on_minimal_growthrate_ydl052c_3_data).
has_part(trial_on_minimal_growthrate_ydl052c_3_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_ydl052c_3_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_ydl052c_3_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_ydl052c_3,'mar07-trial7_expt001-plate008').
plate('mar07-trial7_expt001-plate008').
has_proposition(trial_on_minimal_growthrate_ydl052c_3,trial_on_minimal_growthrate_ydl052c_3_result).
result(trial_on_minimal_growthrate_ydl052c_3_result).
has_part(trial_on_minimal_growthrate_ydl052c_3_result,trial_on_minimal_growthrate_ydl052c_3_result_1).
has_representation(trial_on_minimal_growthrate_ydl052c_3_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_ydl052c_3_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_ydl052c_3_result_1,trial_on_minimal_growthrate_ydl052c_3_result_1_proc).
procedure(trial_on_minimal_growthrate_ydl052c_3_result_1_proc).
has_representation(trial_on_minimal_growthrate_ydl052c_3_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ydl052c_3_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_ydl052c_3_result,trial_on_minimal_growthrate_ydl052c_3_result_2).
has_representation(trial_on_minimal_growthrate_ydl052c_3_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_ydl052c_3_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_ydl052c_3_result_2,trial_on_minimal_growthrate_ydl052c_3_result_2_proc).
procedure(trial_on_minimal_growthrate_ydl052c_3_result_2_proc).
has_representation(trial_on_minimal_growthrate_ydl052c_3_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ydl052c_3_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_ydl052c_4,trial_on_minimal_growthrate_ydl052c_4_design).
design(trial_on_minimal_growthrate_ydl052c_4_design).
has_proposition(trial_on_minimal_growthrate_ydl052c_4_design,trial_on_minimal_growthrate_ydl052c_4_factor).
factor(trial_on_minimal_growthrate_ydl052c_4_factor).
has_representation(trial_on_minimal_growthrate_ydl052c_4_factor,'presence or absence of ydl052c').
has_input(trial_on_minimal_growthrate_ydl052c_4,trial_on_minimal_growthrate_ydl052c_4_data).
data(trial_on_minimal_growthrate_ydl052c_4_data).
has_part(trial_on_minimal_growthrate_ydl052c_4_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_ydl052c_4_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_ydl052c_4_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_ydl052c_4,'mar07-trial8_expt001-plate001').
plate('mar07-trial8_expt001-plate001').
has_proposition(trial_on_minimal_growthrate_ydl052c_4,trial_on_minimal_growthrate_ydl052c_4_result).
result(trial_on_minimal_growthrate_ydl052c_4_result).
has_part(trial_on_minimal_growthrate_ydl052c_4_result,trial_on_minimal_growthrate_ydl052c_4_result_1).
has_representation(trial_on_minimal_growthrate_ydl052c_4_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_ydl052c_4_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_ydl052c_4_result_1,trial_on_minimal_growthrate_ydl052c_4_result_1_proc).
procedure(trial_on_minimal_growthrate_ydl052c_4_result_1_proc).
has_representation(trial_on_minimal_growthrate_ydl052c_4_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ydl052c_4_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_ydl052c_4_result,trial_on_minimal_growthrate_ydl052c_4_result_2).
has_representation(trial_on_minimal_growthrate_ydl052c_4_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_ydl052c_4_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_ydl052c_4_result_2,trial_on_minimal_growthrate_ydl052c_4_result_2_proc).
procedure(trial_on_minimal_growthrate_ydl052c_4_result_2_proc).
has_representation(trial_on_minimal_growthrate_ydl052c_4_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ydl052c_4_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_ydl052c_5,trial_on_minimal_growthrate_ydl052c_5_design).
design(trial_on_minimal_growthrate_ydl052c_5_design).
has_proposition(trial_on_minimal_growthrate_ydl052c_5_design,trial_on_minimal_growthrate_ydl052c_5_factor).
factor(trial_on_minimal_growthrate_ydl052c_5_factor).
has_representation(trial_on_minimal_growthrate_ydl052c_5_factor,'presence or absence of ydl052c').
has_input(trial_on_minimal_growthrate_ydl052c_5,trial_on_minimal_growthrate_ydl052c_5_data).
data(trial_on_minimal_growthrate_ydl052c_5_data).
has_part(trial_on_minimal_growthrate_ydl052c_5_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_ydl052c_5_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_ydl052c_5_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_ydl052c_5,'mar07-trial8_expt001-plate002').
plate('mar07-trial8_expt001-plate002').
has_proposition(trial_on_minimal_growthrate_ydl052c_5,trial_on_minimal_growthrate_ydl052c_5_result).
result(trial_on_minimal_growthrate_ydl052c_5_result).
has_part(trial_on_minimal_growthrate_ydl052c_5_result,trial_on_minimal_growthrate_ydl052c_5_result_1).
has_representation(trial_on_minimal_growthrate_ydl052c_5_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_ydl052c_5_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_ydl052c_5_result_1,trial_on_minimal_growthrate_ydl052c_5_result_1_proc).
procedure(trial_on_minimal_growthrate_ydl052c_5_result_1_proc).
has_representation(trial_on_minimal_growthrate_ydl052c_5_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ydl052c_5_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_ydl052c_5_result,trial_on_minimal_growthrate_ydl052c_5_result_2).
has_representation(trial_on_minimal_growthrate_ydl052c_5_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_ydl052c_5_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_ydl052c_5_result_2,trial_on_minimal_growthrate_ydl052c_5_result_2_proc).
procedure(trial_on_minimal_growthrate_ydl052c_5_result_2_proc).
has_representation(trial_on_minimal_growthrate_ydl052c_5_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ydl052c_5_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_ydl052c_6,trial_on_minimal_growthrate_ydl052c_6_design).
design(trial_on_minimal_growthrate_ydl052c_6_design).
has_proposition(trial_on_minimal_growthrate_ydl052c_6_design,trial_on_minimal_growthrate_ydl052c_6_factor).
factor(trial_on_minimal_growthrate_ydl052c_6_factor).
has_representation(trial_on_minimal_growthrate_ydl052c_6_factor,'presence or absence of ydl052c').
has_input(trial_on_minimal_growthrate_ydl052c_6,trial_on_minimal_growthrate_ydl052c_6_data).
data(trial_on_minimal_growthrate_ydl052c_6_data).
has_part(trial_on_minimal_growthrate_ydl052c_6_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_ydl052c_6_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_ydl052c_6_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_ydl052c_6,'mar07-trial8_expt001-plate006').
plate('mar07-trial8_expt001-plate006').
has_proposition(trial_on_minimal_growthrate_ydl052c_6,trial_on_minimal_growthrate_ydl052c_6_result).
result(trial_on_minimal_growthrate_ydl052c_6_result).
has_part(trial_on_minimal_growthrate_ydl052c_6_result,trial_on_minimal_growthrate_ydl052c_6_result_1).
has_representation(trial_on_minimal_growthrate_ydl052c_6_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_ydl052c_6_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_ydl052c_6_result_1,trial_on_minimal_growthrate_ydl052c_6_result_1_proc).
procedure(trial_on_minimal_growthrate_ydl052c_6_result_1_proc).
has_representation(trial_on_minimal_growthrate_ydl052c_6_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ydl052c_6_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_ydl052c_6_result,trial_on_minimal_growthrate_ydl052c_6_result_2).
has_representation(trial_on_minimal_growthrate_ydl052c_6_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_ydl052c_6_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_ydl052c_6_result_2,trial_on_minimal_growthrate_ydl052c_6_result_2_proc).
procedure(trial_on_minimal_growthrate_ydl052c_6_result_2_proc).
has_representation(trial_on_minimal_growthrate_ydl052c_6_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ydl052c_6_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_ydl052c,trial_on_minimal_growthrate_ydl052c_results).
result(trial_on_minimal_growthrate_ydl052c_results).
has_part(trial_on_minimal_growthrate_ydl052c_results,trial_on_minimal_growthrate_ydl052c_results_1).
has_representation(trial_on_minimal_growthrate_ydl052c_results_1,'median of knockout medians missing ydl052c').
text_representation('median of knockout medians missing ydl052c').
has_proposition(trial_on_minimal_growthrate_ydl052c_results_1,trial_on_minimal_growthrate_ydl052c_results_1_proc).
procedure(trial_on_minimal_growthrate_ydl052c_results_1_proc).
has_proposition(trial_on_minimal_growthrate_ydl052c_results_1_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_minimal_growthrate_ydl052c_results,trial_on_minimal_growthrate_ydl052c_results_2).
has_representation(trial_on_minimal_growthrate_ydl052c_results_2,'median of wild type medians').
text_representation('median of wild type medians').
has_proposition(trial_on_minimal_growthrate_ydl052c_results_2,trial_on_minimal_growthrate_ydl052c_results_2_proc).
procedure(trial_on_minimal_growthrate_ydl052c_results_2_proc).
has_proposition(trial_on_minimal_growthrate_ydl052c_results_2_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_minimal_growthrate_ydl052c_results,trial_on_minimal_growthrate_ydl052c_results_3).
has_representation(trial_on_minimal_growthrate_ydl052c_results_3,'difference between trial_on_minimal_growthrate_ydl052c_results_1 and trial_on_minimal_growthrate_ydl052c_results_2').
text_representation('difference between trial_on_minimal_growthrate_ydl052c_results_1 and trial_on_minimal_growthrate_ydl052c_results_2').
has_proposition(study_on_minimal_growthrate,study_on_minimal_growthrate_result).
result(study_on_minimal_growthrate_result).
has_part(study_on_minimal_growthrate_result,study_on_minimal_growthrate_result_1).
has_representation(study_on_minimal_growthrate_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_minimal_growthrate_result_1,'results/wm_km_growth_rate.csv').
link('results/wm_km_growth_rate.csv').
has_proposition(study_on_minimal_growthrate_result_1,study_on_minimal_growthrate_result_1_proc).
procedure(study_on_minimal_growthrate_result_1_proc).
has_proposition(study_on_minimal_growthrate_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_minimal_growthrate_result,study_on_minimal_growthrate_result_2).
has_representation(study_on_minimal_growthrate_result_2,'bar graph (histogram) plotting study_on_minimal_growthrate_result_1').
text_representation('bar graph (histogram) plotting study_on_minimal_growthrate_result_1').
has_proposition(study_on_minimal_growthrate_result_2,'results/km_wm_growth_rate1.tiff').
link('results/km_wm_growth_rate1.tiff').
has_proposition(study_on_minimal_growthrate_result_2,'results/km_wm_growth_rate2.tiff').
link('results/km_wm_growth_rate2.tiff').
has_proposition(study_on_minimal_growthrate_result_2,'results/overlayed_growth_rate.tiff').
link('results/overlayed_growth_rate.tiff').
has_proposition(study_on_minimal_growthrate_result_2,study_on_minimal_growthrate_result_2_proc).
procedure(study_on_minimal_growthrate_result_2_proc).
has_proposition(study_on_minimal_growthrate_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_minimal_growthrate,study_on_minimal_growthrate_conclusion).
conclusion(study_on_minimal_growthrate_conclusion).
has_representation(study_on_minimal_growthrate_conclusion,'The knockouts had on average a higher growth rate in minimal than the wild type').
text_representation('The knockouts had on average a higher growth rate in minimal than the wild type').
has_proposition(study_on_minimal_growthrate_conclusion,'obtain statistical mode of study_on_minimal_growthrate_result_1').
procedure('obtain statistical mode of study_on_minimal_growthrate_result_1').
text_representation('obtain statistical mode of study_on_minimal_growthrate_result_1').
has_part(study_on_minimal_growthrate,trial_on_minimal_growthrate_yil033c).
trial(trial_on_minimal_growthrate_yil033c).
has_agent(trial_on_minimal_growthrate_yil033c,yil033c).
strain(yil033c).
has_proposition(trial_on_minimal_growthrate_yil033c_1,trial_on_minimal_growthrate_yil033c_1_design).
design(trial_on_minimal_growthrate_yil033c_1_design).
has_proposition(trial_on_minimal_growthrate_yil033c_1_design,trial_on_minimal_growthrate_yil033c_1_factor).
factor(trial_on_minimal_growthrate_yil033c_1_factor).
has_representation(trial_on_minimal_growthrate_yil033c_1_factor,'presence or absence of yil033c').
has_input(trial_on_minimal_growthrate_yil033c_1,trial_on_minimal_growthrate_yil033c_1_data).
data(trial_on_minimal_growthrate_yil033c_1_data).
has_part(trial_on_minimal_growthrate_yil033c_1_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_yil033c_1_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_yil033c_1_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_yil033c_1,'mar07-trial5_expt001-plate001').
plate('mar07-trial5_expt001-plate001').
has_proposition(trial_on_minimal_growthrate_yil033c_1,trial_on_minimal_growthrate_yil033c_1_result).
result(trial_on_minimal_growthrate_yil033c_1_result).
has_part(trial_on_minimal_growthrate_yil033c_1_result,trial_on_minimal_growthrate_yil033c_1_result_1).
has_representation(trial_on_minimal_growthrate_yil033c_1_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_yil033c_1_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_yil033c_1_result_1,trial_on_minimal_growthrate_yil033c_1_result_1_proc).
procedure(trial_on_minimal_growthrate_yil033c_1_result_1_proc).
has_representation(trial_on_minimal_growthrate_yil033c_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_yil033c_1_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_yil033c_1_result,trial_on_minimal_growthrate_yil033c_1_result_2).
has_representation(trial_on_minimal_growthrate_yil033c_1_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_yil033c_1_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_yil033c_1_result_2,trial_on_minimal_growthrate_yil033c_1_result_2_proc).
procedure(trial_on_minimal_growthrate_yil033c_1_result_2_proc).
has_representation(trial_on_minimal_growthrate_yil033c_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_yil033c_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_yil033c_2,trial_on_minimal_growthrate_yil033c_2_design).
design(trial_on_minimal_growthrate_yil033c_2_design).
has_proposition(trial_on_minimal_growthrate_yil033c_2_design,trial_on_minimal_growthrate_yil033c_2_factor).
factor(trial_on_minimal_growthrate_yil033c_2_factor).
has_representation(trial_on_minimal_growthrate_yil033c_2_factor,'presence or absence of yil033c').
has_input(trial_on_minimal_growthrate_yil033c_2,trial_on_minimal_growthrate_yil033c_2_data).
data(trial_on_minimal_growthrate_yil033c_2_data).
has_part(trial_on_minimal_growthrate_yil033c_2_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_yil033c_2_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_yil033c_2_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_yil033c_2,'mar07-trial5_expt001-plate002').
plate('mar07-trial5_expt001-plate002').
has_proposition(trial_on_minimal_growthrate_yil033c_2,trial_on_minimal_growthrate_yil033c_2_result).
result(trial_on_minimal_growthrate_yil033c_2_result).
has_part(trial_on_minimal_growthrate_yil033c_2_result,trial_on_minimal_growthrate_yil033c_2_result_1).
has_representation(trial_on_minimal_growthrate_yil033c_2_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_yil033c_2_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_yil033c_2_result_1,trial_on_minimal_growthrate_yil033c_2_result_1_proc).
procedure(trial_on_minimal_growthrate_yil033c_2_result_1_proc).
has_representation(trial_on_minimal_growthrate_yil033c_2_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_yil033c_2_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_yil033c_2_result,trial_on_minimal_growthrate_yil033c_2_result_2).
has_representation(trial_on_minimal_growthrate_yil033c_2_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_yil033c_2_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_yil033c_2_result_2,trial_on_minimal_growthrate_yil033c_2_result_2_proc).
procedure(trial_on_minimal_growthrate_yil033c_2_result_2_proc).
has_representation(trial_on_minimal_growthrate_yil033c_2_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_yil033c_2_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_yil033c_3,trial_on_minimal_growthrate_yil033c_3_design).
design(trial_on_minimal_growthrate_yil033c_3_design).
has_proposition(trial_on_minimal_growthrate_yil033c_3_design,trial_on_minimal_growthrate_yil033c_3_factor).
factor(trial_on_minimal_growthrate_yil033c_3_factor).
has_representation(trial_on_minimal_growthrate_yil033c_3_factor,'presence or absence of yil033c').
has_input(trial_on_minimal_growthrate_yil033c_3,trial_on_minimal_growthrate_yil033c_3_data).
data(trial_on_minimal_growthrate_yil033c_3_data).
has_part(trial_on_minimal_growthrate_yil033c_3_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_yil033c_3_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_yil033c_3_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_yil033c_3,'mar07-trial5_expt001-plate003').
plate('mar07-trial5_expt001-plate003').
has_proposition(trial_on_minimal_growthrate_yil033c_3,trial_on_minimal_growthrate_yil033c_3_result).
result(trial_on_minimal_growthrate_yil033c_3_result).
has_part(trial_on_minimal_growthrate_yil033c_3_result,trial_on_minimal_growthrate_yil033c_3_result_1).
has_representation(trial_on_minimal_growthrate_yil033c_3_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_yil033c_3_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_yil033c_3_result_1,trial_on_minimal_growthrate_yil033c_3_result_1_proc).
procedure(trial_on_minimal_growthrate_yil033c_3_result_1_proc).
has_representation(trial_on_minimal_growthrate_yil033c_3_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_yil033c_3_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_yil033c_3_result,trial_on_minimal_growthrate_yil033c_3_result_2).
has_representation(trial_on_minimal_growthrate_yil033c_3_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_yil033c_3_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_yil033c_3_result_2,trial_on_minimal_growthrate_yil033c_3_result_2_proc).
procedure(trial_on_minimal_growthrate_yil033c_3_result_2_proc).
has_representation(trial_on_minimal_growthrate_yil033c_3_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_yil033c_3_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_yil033c_4,trial_on_minimal_growthrate_yil033c_4_design).
design(trial_on_minimal_growthrate_yil033c_4_design).
has_proposition(trial_on_minimal_growthrate_yil033c_4_design,trial_on_minimal_growthrate_yil033c_4_factor).
factor(trial_on_minimal_growthrate_yil033c_4_factor).
has_representation(trial_on_minimal_growthrate_yil033c_4_factor,'presence or absence of yil033c').
has_input(trial_on_minimal_growthrate_yil033c_4,trial_on_minimal_growthrate_yil033c_4_data).
data(trial_on_minimal_growthrate_yil033c_4_data).
has_part(trial_on_minimal_growthrate_yil033c_4_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_yil033c_4_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_yil033c_4_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_yil033c_4,'mar07-trial6_expt001-plate003').
plate('mar07-trial6_expt001-plate003').
has_proposition(trial_on_minimal_growthrate_yil033c_4,trial_on_minimal_growthrate_yil033c_4_result).
result(trial_on_minimal_growthrate_yil033c_4_result).
has_part(trial_on_minimal_growthrate_yil033c_4_result,trial_on_minimal_growthrate_yil033c_4_result_1).
has_representation(trial_on_minimal_growthrate_yil033c_4_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_yil033c_4_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_yil033c_4_result_1,trial_on_minimal_growthrate_yil033c_4_result_1_proc).
procedure(trial_on_minimal_growthrate_yil033c_4_result_1_proc).
has_representation(trial_on_minimal_growthrate_yil033c_4_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_yil033c_4_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_yil033c_4_result,trial_on_minimal_growthrate_yil033c_4_result_2).
has_representation(trial_on_minimal_growthrate_yil033c_4_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_yil033c_4_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_yil033c_4_result_2,trial_on_minimal_growthrate_yil033c_4_result_2_proc).
procedure(trial_on_minimal_growthrate_yil033c_4_result_2_proc).
has_representation(trial_on_minimal_growthrate_yil033c_4_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_yil033c_4_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_yil033c_5,trial_on_minimal_growthrate_yil033c_5_design).
design(trial_on_minimal_growthrate_yil033c_5_design).
has_proposition(trial_on_minimal_growthrate_yil033c_5_design,trial_on_minimal_growthrate_yil033c_5_factor).
factor(trial_on_minimal_growthrate_yil033c_5_factor).
has_representation(trial_on_minimal_growthrate_yil033c_5_factor,'presence or absence of yil033c').
has_input(trial_on_minimal_growthrate_yil033c_5,trial_on_minimal_growthrate_yil033c_5_data).
data(trial_on_minimal_growthrate_yil033c_5_data).
has_part(trial_on_minimal_growthrate_yil033c_5_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_yil033c_5_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_yil033c_5_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_yil033c_5,'mar07-trial6_expt001-plate005').
plate('mar07-trial6_expt001-plate005').
has_proposition(trial_on_minimal_growthrate_yil033c_5,trial_on_minimal_growthrate_yil033c_5_result).
result(trial_on_minimal_growthrate_yil033c_5_result).
has_part(trial_on_minimal_growthrate_yil033c_5_result,trial_on_minimal_growthrate_yil033c_5_result_1).
has_representation(trial_on_minimal_growthrate_yil033c_5_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_yil033c_5_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_yil033c_5_result_1,trial_on_minimal_growthrate_yil033c_5_result_1_proc).
procedure(trial_on_minimal_growthrate_yil033c_5_result_1_proc).
has_representation(trial_on_minimal_growthrate_yil033c_5_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_yil033c_5_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_yil033c_5_result,trial_on_minimal_growthrate_yil033c_5_result_2).
has_representation(trial_on_minimal_growthrate_yil033c_5_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_yil033c_5_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_yil033c_5_result_2,trial_on_minimal_growthrate_yil033c_5_result_2_proc).
procedure(trial_on_minimal_growthrate_yil033c_5_result_2_proc).
has_representation(trial_on_minimal_growthrate_yil033c_5_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_yil033c_5_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_yil033c_6,trial_on_minimal_growthrate_yil033c_6_design).
design(trial_on_minimal_growthrate_yil033c_6_design).
has_proposition(trial_on_minimal_growthrate_yil033c_6_design,trial_on_minimal_growthrate_yil033c_6_factor).
factor(trial_on_minimal_growthrate_yil033c_6_factor).
has_representation(trial_on_minimal_growthrate_yil033c_6_factor,'presence or absence of yil033c').
has_input(trial_on_minimal_growthrate_yil033c_6,trial_on_minimal_growthrate_yil033c_6_data).
data(trial_on_minimal_growthrate_yil033c_6_data).
has_part(trial_on_minimal_growthrate_yil033c_6_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_yil033c_6_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_yil033c_6_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_yil033c_6,'mar07-trial7_expt001-plate003').
plate('mar07-trial7_expt001-plate003').
has_proposition(trial_on_minimal_growthrate_yil033c_6,trial_on_minimal_growthrate_yil033c_6_result).
result(trial_on_minimal_growthrate_yil033c_6_result).
has_part(trial_on_minimal_growthrate_yil033c_6_result,trial_on_minimal_growthrate_yil033c_6_result_1).
has_representation(trial_on_minimal_growthrate_yil033c_6_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_yil033c_6_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_yil033c_6_result_1,trial_on_minimal_growthrate_yil033c_6_result_1_proc).
procedure(trial_on_minimal_growthrate_yil033c_6_result_1_proc).
has_representation(trial_on_minimal_growthrate_yil033c_6_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_yil033c_6_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_yil033c_6_result,trial_on_minimal_growthrate_yil033c_6_result_2).
has_representation(trial_on_minimal_growthrate_yil033c_6_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_yil033c_6_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_yil033c_6_result_2,trial_on_minimal_growthrate_yil033c_6_result_2_proc).
procedure(trial_on_minimal_growthrate_yil033c_6_result_2_proc).
has_representation(trial_on_minimal_growthrate_yil033c_6_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_yil033c_6_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_yil033c_7,trial_on_minimal_growthrate_yil033c_7_design).
design(trial_on_minimal_growthrate_yil033c_7_design).
has_proposition(trial_on_minimal_growthrate_yil033c_7_design,trial_on_minimal_growthrate_yil033c_7_factor).
factor(trial_on_minimal_growthrate_yil033c_7_factor).
has_representation(trial_on_minimal_growthrate_yil033c_7_factor,'presence or absence of yil033c').
has_input(trial_on_minimal_growthrate_yil033c_7,trial_on_minimal_growthrate_yil033c_7_data).
data(trial_on_minimal_growthrate_yil033c_7_data).
has_part(trial_on_minimal_growthrate_yil033c_7_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_yil033c_7_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_yil033c_7_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_yil033c_7,'mar07-trial7_expt001-plate005').
plate('mar07-trial7_expt001-plate005').
has_proposition(trial_on_minimal_growthrate_yil033c_7,trial_on_minimal_growthrate_yil033c_7_result).
result(trial_on_minimal_growthrate_yil033c_7_result).
has_part(trial_on_minimal_growthrate_yil033c_7_result,trial_on_minimal_growthrate_yil033c_7_result_1).
has_representation(trial_on_minimal_growthrate_yil033c_7_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_yil033c_7_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_yil033c_7_result_1,trial_on_minimal_growthrate_yil033c_7_result_1_proc).
procedure(trial_on_minimal_growthrate_yil033c_7_result_1_proc).
has_representation(trial_on_minimal_growthrate_yil033c_7_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_yil033c_7_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_yil033c_7_result,trial_on_minimal_growthrate_yil033c_7_result_2).
has_representation(trial_on_minimal_growthrate_yil033c_7_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_yil033c_7_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_yil033c_7_result_2,trial_on_minimal_growthrate_yil033c_7_result_2_proc).
procedure(trial_on_minimal_growthrate_yil033c_7_result_2_proc).
has_representation(trial_on_minimal_growthrate_yil033c_7_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_yil033c_7_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_yil033c_8,trial_on_minimal_growthrate_yil033c_8_design).
design(trial_on_minimal_growthrate_yil033c_8_design).
has_proposition(trial_on_minimal_growthrate_yil033c_8_design,trial_on_minimal_growthrate_yil033c_8_factor).
factor(trial_on_minimal_growthrate_yil033c_8_factor).
has_representation(trial_on_minimal_growthrate_yil033c_8_factor,'presence or absence of yil033c').
has_input(trial_on_minimal_growthrate_yil033c_8,trial_on_minimal_growthrate_yil033c_8_data).
data(trial_on_minimal_growthrate_yil033c_8_data).
has_part(trial_on_minimal_growthrate_yil033c_8_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_yil033c_8_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_yil033c_8_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_yil033c_8,'mar07-trial8_expt001-plate003').
plate('mar07-trial8_expt001-plate003').
has_proposition(trial_on_minimal_growthrate_yil033c_8,trial_on_minimal_growthrate_yil033c_8_result).
result(trial_on_minimal_growthrate_yil033c_8_result).
has_part(trial_on_minimal_growthrate_yil033c_8_result,trial_on_minimal_growthrate_yil033c_8_result_1).
has_representation(trial_on_minimal_growthrate_yil033c_8_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_yil033c_8_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_yil033c_8_result_1,trial_on_minimal_growthrate_yil033c_8_result_1_proc).
procedure(trial_on_minimal_growthrate_yil033c_8_result_1_proc).
has_representation(trial_on_minimal_growthrate_yil033c_8_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_yil033c_8_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_yil033c_8_result,trial_on_minimal_growthrate_yil033c_8_result_2).
has_representation(trial_on_minimal_growthrate_yil033c_8_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_yil033c_8_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_yil033c_8_result_2,trial_on_minimal_growthrate_yil033c_8_result_2_proc).
procedure(trial_on_minimal_growthrate_yil033c_8_result_2_proc).
has_representation(trial_on_minimal_growthrate_yil033c_8_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_yil033c_8_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_yil033c_9,trial_on_minimal_growthrate_yil033c_9_design).
design(trial_on_minimal_growthrate_yil033c_9_design).
has_proposition(trial_on_minimal_growthrate_yil033c_9_design,trial_on_minimal_growthrate_yil033c_9_factor).
factor(trial_on_minimal_growthrate_yil033c_9_factor).
has_representation(trial_on_minimal_growthrate_yil033c_9_factor,'presence or absence of yil033c').
has_input(trial_on_minimal_growthrate_yil033c_9,trial_on_minimal_growthrate_yil033c_9_data).
data(trial_on_minimal_growthrate_yil033c_9_data).
has_part(trial_on_minimal_growthrate_yil033c_9_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_yil033c_9_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_yil033c_9_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_yil033c_9,'mar07-trial8_expt001-plate004').
plate('mar07-trial8_expt001-plate004').
has_proposition(trial_on_minimal_growthrate_yil033c_9,trial_on_minimal_growthrate_yil033c_9_result).
result(trial_on_minimal_growthrate_yil033c_9_result).
has_part(trial_on_minimal_growthrate_yil033c_9_result,trial_on_minimal_growthrate_yil033c_9_result_1).
has_representation(trial_on_minimal_growthrate_yil033c_9_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_yil033c_9_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_yil033c_9_result_1,trial_on_minimal_growthrate_yil033c_9_result_1_proc).
procedure(trial_on_minimal_growthrate_yil033c_9_result_1_proc).
has_representation(trial_on_minimal_growthrate_yil033c_9_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_yil033c_9_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_yil033c_9_result,trial_on_minimal_growthrate_yil033c_9_result_2).
has_representation(trial_on_minimal_growthrate_yil033c_9_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_yil033c_9_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_yil033c_9_result_2,trial_on_minimal_growthrate_yil033c_9_result_2_proc).
procedure(trial_on_minimal_growthrate_yil033c_9_result_2_proc).
has_representation(trial_on_minimal_growthrate_yil033c_9_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_yil033c_9_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_yil033c_10,trial_on_minimal_growthrate_yil033c_10_design).
design(trial_on_minimal_growthrate_yil033c_10_design).
has_proposition(trial_on_minimal_growthrate_yil033c_10_design,trial_on_minimal_growthrate_yil033c_10_factor).
factor(trial_on_minimal_growthrate_yil033c_10_factor).
has_representation(trial_on_minimal_growthrate_yil033c_10_factor,'presence or absence of yil033c').
has_input(trial_on_minimal_growthrate_yil033c_10,trial_on_minimal_growthrate_yil033c_10_data).
data(trial_on_minimal_growthrate_yil033c_10_data).
has_part(trial_on_minimal_growthrate_yil033c_10_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_yil033c_10_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_yil033c_10_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_yil033c_10,'mar07-trial8_expt001-plate005').
plate('mar07-trial8_expt001-plate005').
has_proposition(trial_on_minimal_growthrate_yil033c_10,trial_on_minimal_growthrate_yil033c_10_result).
result(trial_on_minimal_growthrate_yil033c_10_result).
has_part(trial_on_minimal_growthrate_yil033c_10_result,trial_on_minimal_growthrate_yil033c_10_result_1).
has_representation(trial_on_minimal_growthrate_yil033c_10_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_yil033c_10_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_yil033c_10_result_1,trial_on_minimal_growthrate_yil033c_10_result_1_proc).
procedure(trial_on_minimal_growthrate_yil033c_10_result_1_proc).
has_representation(trial_on_minimal_growthrate_yil033c_10_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_yil033c_10_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_yil033c_10_result,trial_on_minimal_growthrate_yil033c_10_result_2).
has_representation(trial_on_minimal_growthrate_yil033c_10_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_yil033c_10_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_yil033c_10_result_2,trial_on_minimal_growthrate_yil033c_10_result_2_proc).
procedure(trial_on_minimal_growthrate_yil033c_10_result_2_proc).
has_representation(trial_on_minimal_growthrate_yil033c_10_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_yil033c_10_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_yil033c_11,trial_on_minimal_growthrate_yil033c_11_design).
design(trial_on_minimal_growthrate_yil033c_11_design).
has_proposition(trial_on_minimal_growthrate_yil033c_11_design,trial_on_minimal_growthrate_yil033c_11_factor).
factor(trial_on_minimal_growthrate_yil033c_11_factor).
has_representation(trial_on_minimal_growthrate_yil033c_11_factor,'presence or absence of yil033c').
has_input(trial_on_minimal_growthrate_yil033c_11,trial_on_minimal_growthrate_yil033c_11_data).
data(trial_on_minimal_growthrate_yil033c_11_data).
has_part(trial_on_minimal_growthrate_yil033c_11_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_yil033c_11_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_yil033c_11_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_yil033c_11,'mar07-trial8_expt001-plate007').
plate('mar07-trial8_expt001-plate007').
has_proposition(trial_on_minimal_growthrate_yil033c_11,trial_on_minimal_growthrate_yil033c_11_result).
result(trial_on_minimal_growthrate_yil033c_11_result).
has_part(trial_on_minimal_growthrate_yil033c_11_result,trial_on_minimal_growthrate_yil033c_11_result_1).
has_representation(trial_on_minimal_growthrate_yil033c_11_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_yil033c_11_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_yil033c_11_result_1,trial_on_minimal_growthrate_yil033c_11_result_1_proc).
procedure(trial_on_minimal_growthrate_yil033c_11_result_1_proc).
has_representation(trial_on_minimal_growthrate_yil033c_11_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_yil033c_11_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_yil033c_11_result,trial_on_minimal_growthrate_yil033c_11_result_2).
has_representation(trial_on_minimal_growthrate_yil033c_11_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_yil033c_11_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_yil033c_11_result_2,trial_on_minimal_growthrate_yil033c_11_result_2_proc).
procedure(trial_on_minimal_growthrate_yil033c_11_result_2_proc).
has_representation(trial_on_minimal_growthrate_yil033c_11_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_yil033c_11_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_yil033c,trial_on_minimal_growthrate_yil033c_results).
result(trial_on_minimal_growthrate_yil033c_results).
has_part(trial_on_minimal_growthrate_yil033c_results,trial_on_minimal_growthrate_yil033c_results_1).
has_representation(trial_on_minimal_growthrate_yil033c_results_1,'median of knockout medians missing yil033c').
text_representation('median of knockout medians missing yil033c').
has_proposition(trial_on_minimal_growthrate_yil033c_results_1,trial_on_minimal_growthrate_yil033c_results_1_proc).
procedure(trial_on_minimal_growthrate_yil033c_results_1_proc).
has_proposition(trial_on_minimal_growthrate_yil033c_results_1_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_minimal_growthrate_yil033c_results,trial_on_minimal_growthrate_yil033c_results_2).
has_representation(trial_on_minimal_growthrate_yil033c_results_2,'median of wild type medians').
text_representation('median of wild type medians').
has_proposition(trial_on_minimal_growthrate_yil033c_results_2,trial_on_minimal_growthrate_yil033c_results_2_proc).
procedure(trial_on_minimal_growthrate_yil033c_results_2_proc).
has_proposition(trial_on_minimal_growthrate_yil033c_results_2_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_minimal_growthrate_yil033c_results,trial_on_minimal_growthrate_yil033c_results_3).
has_representation(trial_on_minimal_growthrate_yil033c_results_3,'difference between trial_on_minimal_growthrate_yil033c_results_1 and trial_on_minimal_growthrate_yil033c_results_2').
text_representation('difference between trial_on_minimal_growthrate_yil033c_results_1 and trial_on_minimal_growthrate_yil033c_results_2').
has_proposition(study_on_minimal_growthrate,study_on_minimal_growthrate_result).
result(study_on_minimal_growthrate_result).
has_part(study_on_minimal_growthrate_result,study_on_minimal_growthrate_result_1).
has_representation(study_on_minimal_growthrate_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_minimal_growthrate_result_1,'results/wm_km_growth_rate.csv').
link('results/wm_km_growth_rate.csv').
has_proposition(study_on_minimal_growthrate_result_1,study_on_minimal_growthrate_result_1_proc).
procedure(study_on_minimal_growthrate_result_1_proc).
has_proposition(study_on_minimal_growthrate_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_minimal_growthrate_result,study_on_minimal_growthrate_result_2).
has_representation(study_on_minimal_growthrate_result_2,'bar graph (histogram) plotting study_on_minimal_growthrate_result_1').
text_representation('bar graph (histogram) plotting study_on_minimal_growthrate_result_1').
has_proposition(study_on_minimal_growthrate_result_2,'results/km_wm_growth_rate1.tiff').
link('results/km_wm_growth_rate1.tiff').
has_proposition(study_on_minimal_growthrate_result_2,'results/km_wm_growth_rate2.tiff').
link('results/km_wm_growth_rate2.tiff').
has_proposition(study_on_minimal_growthrate_result_2,'results/overlayed_growth_rate.tiff').
link('results/overlayed_growth_rate.tiff').
has_proposition(study_on_minimal_growthrate_result_2,study_on_minimal_growthrate_result_2_proc).
procedure(study_on_minimal_growthrate_result_2_proc).
has_proposition(study_on_minimal_growthrate_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_minimal_growthrate,study_on_minimal_growthrate_conclusion).
conclusion(study_on_minimal_growthrate_conclusion).
has_representation(study_on_minimal_growthrate_conclusion,'The knockouts had on average a higher growth rate in minimal than the wild type').
text_representation('The knockouts had on average a higher growth rate in minimal than the wild type').
has_proposition(study_on_minimal_growthrate_conclusion,'obtain statistical mode of study_on_minimal_growthrate_result_1').
procedure('obtain statistical mode of study_on_minimal_growthrate_result_1').
text_representation('obtain statistical mode of study_on_minimal_growthrate_result_1').
has_part(study_on_minimal_growthrate,trial_on_minimal_growthrate_ybr166c).
trial(trial_on_minimal_growthrate_ybr166c).
has_agent(trial_on_minimal_growthrate_ybr166c,ybr166c).
strain(ybr166c).
has_proposition(trial_on_minimal_growthrate_ybr166c_1,trial_on_minimal_growthrate_ybr166c_1_design).
design(trial_on_minimal_growthrate_ybr166c_1_design).
has_proposition(trial_on_minimal_growthrate_ybr166c_1_design,trial_on_minimal_growthrate_ybr166c_1_factor).
factor(trial_on_minimal_growthrate_ybr166c_1_factor).
has_representation(trial_on_minimal_growthrate_ybr166c_1_factor,'presence or absence of ybr166c').
has_input(trial_on_minimal_growthrate_ybr166c_1,trial_on_minimal_growthrate_ybr166c_1_data).
data(trial_on_minimal_growthrate_ybr166c_1_data).
has_part(trial_on_minimal_growthrate_ybr166c_1_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_ybr166c_1_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_ybr166c_1_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_ybr166c_1,'nature-loop3_expt001-plate008').
plate('nature-loop3_expt001-plate008').
has_proposition(trial_on_minimal_growthrate_ybr166c_1,trial_on_minimal_growthrate_ybr166c_1_result).
result(trial_on_minimal_growthrate_ybr166c_1_result).
has_part(trial_on_minimal_growthrate_ybr166c_1_result,trial_on_minimal_growthrate_ybr166c_1_result_1).
has_representation(trial_on_minimal_growthrate_ybr166c_1_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_ybr166c_1_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_ybr166c_1_result_1,trial_on_minimal_growthrate_ybr166c_1_result_1_proc).
procedure(trial_on_minimal_growthrate_ybr166c_1_result_1_proc).
has_representation(trial_on_minimal_growthrate_ybr166c_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ybr166c_1_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_ybr166c_1_result,trial_on_minimal_growthrate_ybr166c_1_result_2).
has_representation(trial_on_minimal_growthrate_ybr166c_1_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_ybr166c_1_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_ybr166c_1_result_2,trial_on_minimal_growthrate_ybr166c_1_result_2_proc).
procedure(trial_on_minimal_growthrate_ybr166c_1_result_2_proc).
has_representation(trial_on_minimal_growthrate_ybr166c_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ybr166c_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_ybr166c_2,trial_on_minimal_growthrate_ybr166c_2_design).
design(trial_on_minimal_growthrate_ybr166c_2_design).
has_proposition(trial_on_minimal_growthrate_ybr166c_2_design,trial_on_minimal_growthrate_ybr166c_2_factor).
factor(trial_on_minimal_growthrate_ybr166c_2_factor).
has_representation(trial_on_minimal_growthrate_ybr166c_2_factor,'presence or absence of ybr166c').
has_input(trial_on_minimal_growthrate_ybr166c_2,trial_on_minimal_growthrate_ybr166c_2_data).
data(trial_on_minimal_growthrate_ybr166c_2_data).
has_part(trial_on_minimal_growthrate_ybr166c_2_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_ybr166c_2_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_ybr166c_2_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_ybr166c_2,'nature-loop3_expt002-plate001').
plate('nature-loop3_expt002-plate001').
has_proposition(trial_on_minimal_growthrate_ybr166c_2,trial_on_minimal_growthrate_ybr166c_2_result).
result(trial_on_minimal_growthrate_ybr166c_2_result).
has_part(trial_on_minimal_growthrate_ybr166c_2_result,trial_on_minimal_growthrate_ybr166c_2_result_1).
has_representation(trial_on_minimal_growthrate_ybr166c_2_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_ybr166c_2_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_ybr166c_2_result_1,trial_on_minimal_growthrate_ybr166c_2_result_1_proc).
procedure(trial_on_minimal_growthrate_ybr166c_2_result_1_proc).
has_representation(trial_on_minimal_growthrate_ybr166c_2_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ybr166c_2_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_ybr166c_2_result,trial_on_minimal_growthrate_ybr166c_2_result_2).
has_representation(trial_on_minimal_growthrate_ybr166c_2_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_ybr166c_2_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_ybr166c_2_result_2,trial_on_minimal_growthrate_ybr166c_2_result_2_proc).
procedure(trial_on_minimal_growthrate_ybr166c_2_result_2_proc).
has_representation(trial_on_minimal_growthrate_ybr166c_2_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ybr166c_2_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_ybr166c_3,trial_on_minimal_growthrate_ybr166c_3_design).
design(trial_on_minimal_growthrate_ybr166c_3_design).
has_proposition(trial_on_minimal_growthrate_ybr166c_3_design,trial_on_minimal_growthrate_ybr166c_3_factor).
factor(trial_on_minimal_growthrate_ybr166c_3_factor).
has_representation(trial_on_minimal_growthrate_ybr166c_3_factor,'presence or absence of ybr166c').
has_input(trial_on_minimal_growthrate_ybr166c_3,trial_on_minimal_growthrate_ybr166c_3_data).
data(trial_on_minimal_growthrate_ybr166c_3_data).
has_part(trial_on_minimal_growthrate_ybr166c_3_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_ybr166c_3_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_ybr166c_3_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_ybr166c_3,'nature-loop3_expt003-plate008').
plate('nature-loop3_expt003-plate008').
has_proposition(trial_on_minimal_growthrate_ybr166c_3,trial_on_minimal_growthrate_ybr166c_3_result).
result(trial_on_minimal_growthrate_ybr166c_3_result).
has_part(trial_on_minimal_growthrate_ybr166c_3_result,trial_on_minimal_growthrate_ybr166c_3_result_1).
has_representation(trial_on_minimal_growthrate_ybr166c_3_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_ybr166c_3_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_ybr166c_3_result_1,trial_on_minimal_growthrate_ybr166c_3_result_1_proc).
procedure(trial_on_minimal_growthrate_ybr166c_3_result_1_proc).
has_representation(trial_on_minimal_growthrate_ybr166c_3_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ybr166c_3_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_ybr166c_3_result,trial_on_minimal_growthrate_ybr166c_3_result_2).
has_representation(trial_on_minimal_growthrate_ybr166c_3_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_ybr166c_3_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_ybr166c_3_result_2,trial_on_minimal_growthrate_ybr166c_3_result_2_proc).
procedure(trial_on_minimal_growthrate_ybr166c_3_result_2_proc).
has_representation(trial_on_minimal_growthrate_ybr166c_3_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ybr166c_3_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_ybr166c_4,trial_on_minimal_growthrate_ybr166c_4_design).
design(trial_on_minimal_growthrate_ybr166c_4_design).
has_proposition(trial_on_minimal_growthrate_ybr166c_4_design,trial_on_minimal_growthrate_ybr166c_4_factor).
factor(trial_on_minimal_growthrate_ybr166c_4_factor).
has_representation(trial_on_minimal_growthrate_ybr166c_4_factor,'presence or absence of ybr166c').
has_input(trial_on_minimal_growthrate_ybr166c_4,trial_on_minimal_growthrate_ybr166c_4_data).
data(trial_on_minimal_growthrate_ybr166c_4_data).
has_part(trial_on_minimal_growthrate_ybr166c_4_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_ybr166c_4_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_ybr166c_4_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_ybr166c_4,'nature-loop3_expt004-plate001').
plate('nature-loop3_expt004-plate001').
has_proposition(trial_on_minimal_growthrate_ybr166c_4,trial_on_minimal_growthrate_ybr166c_4_result).
result(trial_on_minimal_growthrate_ybr166c_4_result).
has_part(trial_on_minimal_growthrate_ybr166c_4_result,trial_on_minimal_growthrate_ybr166c_4_result_1).
has_representation(trial_on_minimal_growthrate_ybr166c_4_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_ybr166c_4_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_ybr166c_4_result_1,trial_on_minimal_growthrate_ybr166c_4_result_1_proc).
procedure(trial_on_minimal_growthrate_ybr166c_4_result_1_proc).
has_representation(trial_on_minimal_growthrate_ybr166c_4_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ybr166c_4_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_ybr166c_4_result,trial_on_minimal_growthrate_ybr166c_4_result_2).
has_representation(trial_on_minimal_growthrate_ybr166c_4_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_ybr166c_4_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_ybr166c_4_result_2,trial_on_minimal_growthrate_ybr166c_4_result_2_proc).
procedure(trial_on_minimal_growthrate_ybr166c_4_result_2_proc).
has_representation(trial_on_minimal_growthrate_ybr166c_4_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ybr166c_4_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_ybr166c_5,trial_on_minimal_growthrate_ybr166c_5_design).
design(trial_on_minimal_growthrate_ybr166c_5_design).
has_proposition(trial_on_minimal_growthrate_ybr166c_5_design,trial_on_minimal_growthrate_ybr166c_5_factor).
factor(trial_on_minimal_growthrate_ybr166c_5_factor).
has_representation(trial_on_minimal_growthrate_ybr166c_5_factor,'presence or absence of ybr166c').
has_input(trial_on_minimal_growthrate_ybr166c_5,trial_on_minimal_growthrate_ybr166c_5_data).
data(trial_on_minimal_growthrate_ybr166c_5_data).
has_part(trial_on_minimal_growthrate_ybr166c_5_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_ybr166c_5_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_ybr166c_5_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_ybr166c_5,'nature-loop3_expt005-plate001').
plate('nature-loop3_expt005-plate001').
has_proposition(trial_on_minimal_growthrate_ybr166c_5,trial_on_minimal_growthrate_ybr166c_5_result).
result(trial_on_minimal_growthrate_ybr166c_5_result).
has_part(trial_on_minimal_growthrate_ybr166c_5_result,trial_on_minimal_growthrate_ybr166c_5_result_1).
has_representation(trial_on_minimal_growthrate_ybr166c_5_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_ybr166c_5_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_ybr166c_5_result_1,trial_on_minimal_growthrate_ybr166c_5_result_1_proc).
procedure(trial_on_minimal_growthrate_ybr166c_5_result_1_proc).
has_representation(trial_on_minimal_growthrate_ybr166c_5_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ybr166c_5_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_ybr166c_5_result,trial_on_minimal_growthrate_ybr166c_5_result_2).
has_representation(trial_on_minimal_growthrate_ybr166c_5_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_ybr166c_5_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_ybr166c_5_result_2,trial_on_minimal_growthrate_ybr166c_5_result_2_proc).
procedure(trial_on_minimal_growthrate_ybr166c_5_result_2_proc).
has_representation(trial_on_minimal_growthrate_ybr166c_5_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ybr166c_5_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_ybr166c_6,trial_on_minimal_growthrate_ybr166c_6_design).
design(trial_on_minimal_growthrate_ybr166c_6_design).
has_proposition(trial_on_minimal_growthrate_ybr166c_6_design,trial_on_minimal_growthrate_ybr166c_6_factor).
factor(trial_on_minimal_growthrate_ybr166c_6_factor).
has_representation(trial_on_minimal_growthrate_ybr166c_6_factor,'presence or absence of ybr166c').
has_input(trial_on_minimal_growthrate_ybr166c_6,trial_on_minimal_growthrate_ybr166c_6_data).
data(trial_on_minimal_growthrate_ybr166c_6_data).
has_part(trial_on_minimal_growthrate_ybr166c_6_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_ybr166c_6_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_ybr166c_6_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_ybr166c_6,'nature-loop1_expt001-plate008').
plate('nature-loop1_expt001-plate008').
has_proposition(trial_on_minimal_growthrate_ybr166c_6,trial_on_minimal_growthrate_ybr166c_6_result).
result(trial_on_minimal_growthrate_ybr166c_6_result).
has_part(trial_on_minimal_growthrate_ybr166c_6_result,trial_on_minimal_growthrate_ybr166c_6_result_1).
has_representation(trial_on_minimal_growthrate_ybr166c_6_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_ybr166c_6_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_ybr166c_6_result_1,trial_on_minimal_growthrate_ybr166c_6_result_1_proc).
procedure(trial_on_minimal_growthrate_ybr166c_6_result_1_proc).
has_representation(trial_on_minimal_growthrate_ybr166c_6_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ybr166c_6_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_ybr166c_6_result,trial_on_minimal_growthrate_ybr166c_6_result_2).
has_representation(trial_on_minimal_growthrate_ybr166c_6_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_ybr166c_6_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_ybr166c_6_result_2,trial_on_minimal_growthrate_ybr166c_6_result_2_proc).
procedure(trial_on_minimal_growthrate_ybr166c_6_result_2_proc).
has_representation(trial_on_minimal_growthrate_ybr166c_6_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ybr166c_6_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_ybr166c_7,trial_on_minimal_growthrate_ybr166c_7_design).
design(trial_on_minimal_growthrate_ybr166c_7_design).
has_proposition(trial_on_minimal_growthrate_ybr166c_7_design,trial_on_minimal_growthrate_ybr166c_7_factor).
factor(trial_on_minimal_growthrate_ybr166c_7_factor).
has_representation(trial_on_minimal_growthrate_ybr166c_7_factor,'presence or absence of ybr166c').
has_input(trial_on_minimal_growthrate_ybr166c_7,trial_on_minimal_growthrate_ybr166c_7_data).
data(trial_on_minimal_growthrate_ybr166c_7_data).
has_part(trial_on_minimal_growthrate_ybr166c_7_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_ybr166c_7_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_ybr166c_7_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_ybr166c_7,'nature-loop2_expt001-plate001').
plate('nature-loop2_expt001-plate001').
has_proposition(trial_on_minimal_growthrate_ybr166c_7,trial_on_minimal_growthrate_ybr166c_7_result).
result(trial_on_minimal_growthrate_ybr166c_7_result).
has_part(trial_on_minimal_growthrate_ybr166c_7_result,trial_on_minimal_growthrate_ybr166c_7_result_1).
has_representation(trial_on_minimal_growthrate_ybr166c_7_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_ybr166c_7_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_ybr166c_7_result_1,trial_on_minimal_growthrate_ybr166c_7_result_1_proc).
procedure(trial_on_minimal_growthrate_ybr166c_7_result_1_proc).
has_representation(trial_on_minimal_growthrate_ybr166c_7_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ybr166c_7_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_ybr166c_7_result,trial_on_minimal_growthrate_ybr166c_7_result_2).
has_representation(trial_on_minimal_growthrate_ybr166c_7_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_ybr166c_7_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_ybr166c_7_result_2,trial_on_minimal_growthrate_ybr166c_7_result_2_proc).
procedure(trial_on_minimal_growthrate_ybr166c_7_result_2_proc).
has_representation(trial_on_minimal_growthrate_ybr166c_7_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ybr166c_7_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_ybr166c,trial_on_minimal_growthrate_ybr166c_results).
result(trial_on_minimal_growthrate_ybr166c_results).
has_part(trial_on_minimal_growthrate_ybr166c_results,trial_on_minimal_growthrate_ybr166c_results_1).
has_representation(trial_on_minimal_growthrate_ybr166c_results_1,'median of knockout medians missing ybr166c').
text_representation('median of knockout medians missing ybr166c').
has_proposition(trial_on_minimal_growthrate_ybr166c_results_1,trial_on_minimal_growthrate_ybr166c_results_1_proc).
procedure(trial_on_minimal_growthrate_ybr166c_results_1_proc).
has_proposition(trial_on_minimal_growthrate_ybr166c_results_1_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_minimal_growthrate_ybr166c_results,trial_on_minimal_growthrate_ybr166c_results_2).
has_representation(trial_on_minimal_growthrate_ybr166c_results_2,'median of wild type medians').
text_representation('median of wild type medians').
has_proposition(trial_on_minimal_growthrate_ybr166c_results_2,trial_on_minimal_growthrate_ybr166c_results_2_proc).
procedure(trial_on_minimal_growthrate_ybr166c_results_2_proc).
has_proposition(trial_on_minimal_growthrate_ybr166c_results_2_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_minimal_growthrate_ybr166c_results,trial_on_minimal_growthrate_ybr166c_results_3).
has_representation(trial_on_minimal_growthrate_ybr166c_results_3,'difference between trial_on_minimal_growthrate_ybr166c_results_1 and trial_on_minimal_growthrate_ybr166c_results_2').
text_representation('difference between trial_on_minimal_growthrate_ybr166c_results_1 and trial_on_minimal_growthrate_ybr166c_results_2').
has_proposition(study_on_minimal_growthrate,study_on_minimal_growthrate_result).
result(study_on_minimal_growthrate_result).
has_part(study_on_minimal_growthrate_result,study_on_minimal_growthrate_result_1).
has_representation(study_on_minimal_growthrate_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_minimal_growthrate_result_1,'results/wm_km_growth_rate.csv').
link('results/wm_km_growth_rate.csv').
has_proposition(study_on_minimal_growthrate_result_1,study_on_minimal_growthrate_result_1_proc).
procedure(study_on_minimal_growthrate_result_1_proc).
has_proposition(study_on_minimal_growthrate_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_minimal_growthrate_result,study_on_minimal_growthrate_result_2).
has_representation(study_on_minimal_growthrate_result_2,'bar graph (histogram) plotting study_on_minimal_growthrate_result_1').
text_representation('bar graph (histogram) plotting study_on_minimal_growthrate_result_1').
has_proposition(study_on_minimal_growthrate_result_2,'results/km_wm_growth_rate1.tiff').
link('results/km_wm_growth_rate1.tiff').
has_proposition(study_on_minimal_growthrate_result_2,'results/km_wm_growth_rate2.tiff').
link('results/km_wm_growth_rate2.tiff').
has_proposition(study_on_minimal_growthrate_result_2,'results/overlayed_growth_rate.tiff').
link('results/overlayed_growth_rate.tiff').
has_proposition(study_on_minimal_growthrate_result_2,study_on_minimal_growthrate_result_2_proc).
procedure(study_on_minimal_growthrate_result_2_proc).
has_proposition(study_on_minimal_growthrate_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_minimal_growthrate,study_on_minimal_growthrate_conclusion).
conclusion(study_on_minimal_growthrate_conclusion).
has_representation(study_on_minimal_growthrate_conclusion,'The knockouts had on average a higher growth rate in minimal than the wild type').
text_representation('The knockouts had on average a higher growth rate in minimal than the wild type').
has_proposition(study_on_minimal_growthrate_conclusion,'obtain statistical mode of study_on_minimal_growthrate_result_1').
procedure('obtain statistical mode of study_on_minimal_growthrate_result_1').
text_representation('obtain statistical mode of study_on_minimal_growthrate_result_1').
has_part(study_on_minimal_growthrate,trial_on_minimal_growthrate_ydl168w).
trial(trial_on_minimal_growthrate_ydl168w).
has_agent(trial_on_minimal_growthrate_ydl168w,ydl168w).
strain(ydl168w).
has_proposition(trial_on_minimal_growthrate_ydl168w_1,trial_on_minimal_growthrate_ydl168w_1_design).
design(trial_on_minimal_growthrate_ydl168w_1_design).
has_proposition(trial_on_minimal_growthrate_ydl168w_1_design,trial_on_minimal_growthrate_ydl168w_1_factor).
factor(trial_on_minimal_growthrate_ydl168w_1_factor).
has_representation(trial_on_minimal_growthrate_ydl168w_1_factor,'presence or absence of ydl168w').
has_input(trial_on_minimal_growthrate_ydl168w_1,trial_on_minimal_growthrate_ydl168w_1_data).
data(trial_on_minimal_growthrate_ydl168w_1_data).
has_part(trial_on_minimal_growthrate_ydl168w_1_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_ydl168w_1_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_ydl168w_1_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_ydl168w_1,'feb07-single1_expt001-plate001').
plate('feb07-single1_expt001-plate001').
has_proposition(trial_on_minimal_growthrate_ydl168w_1,trial_on_minimal_growthrate_ydl168w_1_result).
result(trial_on_minimal_growthrate_ydl168w_1_result).
has_part(trial_on_minimal_growthrate_ydl168w_1_result,trial_on_minimal_growthrate_ydl168w_1_result_1).
has_representation(trial_on_minimal_growthrate_ydl168w_1_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_ydl168w_1_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_ydl168w_1_result_1,trial_on_minimal_growthrate_ydl168w_1_result_1_proc).
procedure(trial_on_minimal_growthrate_ydl168w_1_result_1_proc).
has_representation(trial_on_minimal_growthrate_ydl168w_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ydl168w_1_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_ydl168w_1_result,trial_on_minimal_growthrate_ydl168w_1_result_2).
has_representation(trial_on_minimal_growthrate_ydl168w_1_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_ydl168w_1_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_ydl168w_1_result_2,trial_on_minimal_growthrate_ydl168w_1_result_2_proc).
procedure(trial_on_minimal_growthrate_ydl168w_1_result_2_proc).
has_representation(trial_on_minimal_growthrate_ydl168w_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ydl168w_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_ydl168w_2,trial_on_minimal_growthrate_ydl168w_2_design).
design(trial_on_minimal_growthrate_ydl168w_2_design).
has_proposition(trial_on_minimal_growthrate_ydl168w_2_design,trial_on_minimal_growthrate_ydl168w_2_factor).
factor(trial_on_minimal_growthrate_ydl168w_2_factor).
has_representation(trial_on_minimal_growthrate_ydl168w_2_factor,'presence or absence of ydl168w').
has_input(trial_on_minimal_growthrate_ydl168w_2,trial_on_minimal_growthrate_ydl168w_2_data).
data(trial_on_minimal_growthrate_ydl168w_2_data).
has_part(trial_on_minimal_growthrate_ydl168w_2_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_ydl168w_2_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_ydl168w_2_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_ydl168w_2,'jan07-single3_expt001-plate001').
plate('jan07-single3_expt001-plate001').
has_proposition(trial_on_minimal_growthrate_ydl168w_2,trial_on_minimal_growthrate_ydl168w_2_result).
result(trial_on_minimal_growthrate_ydl168w_2_result).
has_part(trial_on_minimal_growthrate_ydl168w_2_result,trial_on_minimal_growthrate_ydl168w_2_result_1).
has_representation(trial_on_minimal_growthrate_ydl168w_2_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_ydl168w_2_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_ydl168w_2_result_1,trial_on_minimal_growthrate_ydl168w_2_result_1_proc).
procedure(trial_on_minimal_growthrate_ydl168w_2_result_1_proc).
has_representation(trial_on_minimal_growthrate_ydl168w_2_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ydl168w_2_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_ydl168w_2_result,trial_on_minimal_growthrate_ydl168w_2_result_2).
has_representation(trial_on_minimal_growthrate_ydl168w_2_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_ydl168w_2_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_ydl168w_2_result_2,trial_on_minimal_growthrate_ydl168w_2_result_2_proc).
procedure(trial_on_minimal_growthrate_ydl168w_2_result_2_proc).
has_representation(trial_on_minimal_growthrate_ydl168w_2_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ydl168w_2_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_ydl168w_3,trial_on_minimal_growthrate_ydl168w_3_design).
design(trial_on_minimal_growthrate_ydl168w_3_design).
has_proposition(trial_on_minimal_growthrate_ydl168w_3_design,trial_on_minimal_growthrate_ydl168w_3_factor).
factor(trial_on_minimal_growthrate_ydl168w_3_factor).
has_representation(trial_on_minimal_growthrate_ydl168w_3_factor,'presence or absence of ydl168w').
has_input(trial_on_minimal_growthrate_ydl168w_3,trial_on_minimal_growthrate_ydl168w_3_data).
data(trial_on_minimal_growthrate_ydl168w_3_data).
has_part(trial_on_minimal_growthrate_ydl168w_3_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_ydl168w_3_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_ydl168w_3_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_ydl168w_3,'jan07-trial1_expt001-plate001').
plate('jan07-trial1_expt001-plate001').
has_proposition(trial_on_minimal_growthrate_ydl168w_3,trial_on_minimal_growthrate_ydl168w_3_result).
result(trial_on_minimal_growthrate_ydl168w_3_result).
has_part(trial_on_minimal_growthrate_ydl168w_3_result,trial_on_minimal_growthrate_ydl168w_3_result_1).
has_representation(trial_on_minimal_growthrate_ydl168w_3_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_ydl168w_3_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_ydl168w_3_result_1,trial_on_minimal_growthrate_ydl168w_3_result_1_proc).
procedure(trial_on_minimal_growthrate_ydl168w_3_result_1_proc).
has_representation(trial_on_minimal_growthrate_ydl168w_3_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ydl168w_3_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_ydl168w_3_result,trial_on_minimal_growthrate_ydl168w_3_result_2).
has_representation(trial_on_minimal_growthrate_ydl168w_3_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_ydl168w_3_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_ydl168w_3_result_2,trial_on_minimal_growthrate_ydl168w_3_result_2_proc).
procedure(trial_on_minimal_growthrate_ydl168w_3_result_2_proc).
has_representation(trial_on_minimal_growthrate_ydl168w_3_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ydl168w_3_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_ydl168w_4,trial_on_minimal_growthrate_ydl168w_4_design).
design(trial_on_minimal_growthrate_ydl168w_4_design).
has_proposition(trial_on_minimal_growthrate_ydl168w_4_design,trial_on_minimal_growthrate_ydl168w_4_factor).
factor(trial_on_minimal_growthrate_ydl168w_4_factor).
has_representation(trial_on_minimal_growthrate_ydl168w_4_factor,'presence or absence of ydl168w').
has_input(trial_on_minimal_growthrate_ydl168w_4,trial_on_minimal_growthrate_ydl168w_4_data).
data(trial_on_minimal_growthrate_ydl168w_4_data).
has_part(trial_on_minimal_growthrate_ydl168w_4_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_ydl168w_4_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_ydl168w_4_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_ydl168w_4,'jan07-trial1_expt001-plate008').
plate('jan07-trial1_expt001-plate008').
has_proposition(trial_on_minimal_growthrate_ydl168w_4,trial_on_minimal_growthrate_ydl168w_4_result).
result(trial_on_minimal_growthrate_ydl168w_4_result).
has_part(trial_on_minimal_growthrate_ydl168w_4_result,trial_on_minimal_growthrate_ydl168w_4_result_1).
has_representation(trial_on_minimal_growthrate_ydl168w_4_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_ydl168w_4_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_ydl168w_4_result_1,trial_on_minimal_growthrate_ydl168w_4_result_1_proc).
procedure(trial_on_minimal_growthrate_ydl168w_4_result_1_proc).
has_representation(trial_on_minimal_growthrate_ydl168w_4_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ydl168w_4_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_ydl168w_4_result,trial_on_minimal_growthrate_ydl168w_4_result_2).
has_representation(trial_on_minimal_growthrate_ydl168w_4_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_ydl168w_4_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_ydl168w_4_result_2,trial_on_minimal_growthrate_ydl168w_4_result_2_proc).
procedure(trial_on_minimal_growthrate_ydl168w_4_result_2_proc).
has_representation(trial_on_minimal_growthrate_ydl168w_4_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ydl168w_4_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_ydl168w_5,trial_on_minimal_growthrate_ydl168w_5_design).
design(trial_on_minimal_growthrate_ydl168w_5_design).
has_proposition(trial_on_minimal_growthrate_ydl168w_5_design,trial_on_minimal_growthrate_ydl168w_5_factor).
factor(trial_on_minimal_growthrate_ydl168w_5_factor).
has_representation(trial_on_minimal_growthrate_ydl168w_5_factor,'presence or absence of ydl168w').
has_input(trial_on_minimal_growthrate_ydl168w_5,trial_on_minimal_growthrate_ydl168w_5_data).
data(trial_on_minimal_growthrate_ydl168w_5_data).
has_part(trial_on_minimal_growthrate_ydl168w_5_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_ydl168w_5_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_ydl168w_5_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_ydl168w_5,'jan07-trial2_expt001-plate003').
plate('jan07-trial2_expt001-plate003').
has_proposition(trial_on_minimal_growthrate_ydl168w_5,trial_on_minimal_growthrate_ydl168w_5_result).
result(trial_on_minimal_growthrate_ydl168w_5_result).
has_part(trial_on_minimal_growthrate_ydl168w_5_result,trial_on_minimal_growthrate_ydl168w_5_result_1).
has_representation(trial_on_minimal_growthrate_ydl168w_5_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_ydl168w_5_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_ydl168w_5_result_1,trial_on_minimal_growthrate_ydl168w_5_result_1_proc).
procedure(trial_on_minimal_growthrate_ydl168w_5_result_1_proc).
has_representation(trial_on_minimal_growthrate_ydl168w_5_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ydl168w_5_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_ydl168w_5_result,trial_on_minimal_growthrate_ydl168w_5_result_2).
has_representation(trial_on_minimal_growthrate_ydl168w_5_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_ydl168w_5_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_ydl168w_5_result_2,trial_on_minimal_growthrate_ydl168w_5_result_2_proc).
procedure(trial_on_minimal_growthrate_ydl168w_5_result_2_proc).
has_representation(trial_on_minimal_growthrate_ydl168w_5_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ydl168w_5_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_ydl168w_6,trial_on_minimal_growthrate_ydl168w_6_design).
design(trial_on_minimal_growthrate_ydl168w_6_design).
has_proposition(trial_on_minimal_growthrate_ydl168w_6_design,trial_on_minimal_growthrate_ydl168w_6_factor).
factor(trial_on_minimal_growthrate_ydl168w_6_factor).
has_representation(trial_on_minimal_growthrate_ydl168w_6_factor,'presence or absence of ydl168w').
has_input(trial_on_minimal_growthrate_ydl168w_6,trial_on_minimal_growthrate_ydl168w_6_data).
data(trial_on_minimal_growthrate_ydl168w_6_data).
has_part(trial_on_minimal_growthrate_ydl168w_6_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_ydl168w_6_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_ydl168w_6_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_ydl168w_6,'jan07-trial2_expt001-plate005').
plate('jan07-trial2_expt001-plate005').
has_proposition(trial_on_minimal_growthrate_ydl168w_6,trial_on_minimal_growthrate_ydl168w_6_result).
result(trial_on_minimal_growthrate_ydl168w_6_result).
has_part(trial_on_minimal_growthrate_ydl168w_6_result,trial_on_minimal_growthrate_ydl168w_6_result_1).
has_representation(trial_on_minimal_growthrate_ydl168w_6_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_ydl168w_6_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_ydl168w_6_result_1,trial_on_minimal_growthrate_ydl168w_6_result_1_proc).
procedure(trial_on_minimal_growthrate_ydl168w_6_result_1_proc).
has_representation(trial_on_minimal_growthrate_ydl168w_6_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ydl168w_6_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_ydl168w_6_result,trial_on_minimal_growthrate_ydl168w_6_result_2).
has_representation(trial_on_minimal_growthrate_ydl168w_6_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_ydl168w_6_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_ydl168w_6_result_2,trial_on_minimal_growthrate_ydl168w_6_result_2_proc).
procedure(trial_on_minimal_growthrate_ydl168w_6_result_2_proc).
has_representation(trial_on_minimal_growthrate_ydl168w_6_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ydl168w_6_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_ydl168w,trial_on_minimal_growthrate_ydl168w_results).
result(trial_on_minimal_growthrate_ydl168w_results).
has_part(trial_on_minimal_growthrate_ydl168w_results,trial_on_minimal_growthrate_ydl168w_results_1).
has_representation(trial_on_minimal_growthrate_ydl168w_results_1,'median of knockout medians missing ydl168w').
text_representation('median of knockout medians missing ydl168w').
has_proposition(trial_on_minimal_growthrate_ydl168w_results_1,trial_on_minimal_growthrate_ydl168w_results_1_proc).
procedure(trial_on_minimal_growthrate_ydl168w_results_1_proc).
has_proposition(trial_on_minimal_growthrate_ydl168w_results_1_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_minimal_growthrate_ydl168w_results,trial_on_minimal_growthrate_ydl168w_results_2).
has_representation(trial_on_minimal_growthrate_ydl168w_results_2,'median of wild type medians').
text_representation('median of wild type medians').
has_proposition(trial_on_minimal_growthrate_ydl168w_results_2,trial_on_minimal_growthrate_ydl168w_results_2_proc).
procedure(trial_on_minimal_growthrate_ydl168w_results_2_proc).
has_proposition(trial_on_minimal_growthrate_ydl168w_results_2_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_minimal_growthrate_ydl168w_results,trial_on_minimal_growthrate_ydl168w_results_3).
has_representation(trial_on_minimal_growthrate_ydl168w_results_3,'difference between trial_on_minimal_growthrate_ydl168w_results_1 and trial_on_minimal_growthrate_ydl168w_results_2').
text_representation('difference between trial_on_minimal_growthrate_ydl168w_results_1 and trial_on_minimal_growthrate_ydl168w_results_2').
has_proposition(study_on_minimal_growthrate,study_on_minimal_growthrate_result).
result(study_on_minimal_growthrate_result).
has_part(study_on_minimal_growthrate_result,study_on_minimal_growthrate_result_1).
has_representation(study_on_minimal_growthrate_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_minimal_growthrate_result_1,'results/wm_km_growth_rate.csv').
link('results/wm_km_growth_rate.csv').
has_proposition(study_on_minimal_growthrate_result_1,study_on_minimal_growthrate_result_1_proc).
procedure(study_on_minimal_growthrate_result_1_proc).
has_proposition(study_on_minimal_growthrate_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_minimal_growthrate_result,study_on_minimal_growthrate_result_2).
has_representation(study_on_minimal_growthrate_result_2,'bar graph (histogram) plotting study_on_minimal_growthrate_result_1').
text_representation('bar graph (histogram) plotting study_on_minimal_growthrate_result_1').
has_proposition(study_on_minimal_growthrate_result_2,'results/km_wm_growth_rate1.tiff').
link('results/km_wm_growth_rate1.tiff').
has_proposition(study_on_minimal_growthrate_result_2,'results/km_wm_growth_rate2.tiff').
link('results/km_wm_growth_rate2.tiff').
has_proposition(study_on_minimal_growthrate_result_2,'results/overlayed_growth_rate.tiff').
link('results/overlayed_growth_rate.tiff').
has_proposition(study_on_minimal_growthrate_result_2,study_on_minimal_growthrate_result_2_proc).
procedure(study_on_minimal_growthrate_result_2_proc).
has_proposition(study_on_minimal_growthrate_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_minimal_growthrate,study_on_minimal_growthrate_conclusion).
conclusion(study_on_minimal_growthrate_conclusion).
has_representation(study_on_minimal_growthrate_conclusion,'The knockouts had on average a higher growth rate in minimal than the wild type').
text_representation('The knockouts had on average a higher growth rate in minimal than the wild type').
has_proposition(study_on_minimal_growthrate_conclusion,'obtain statistical mode of study_on_minimal_growthrate_result_1').
procedure('obtain statistical mode of study_on_minimal_growthrate_result_1').
text_representation('obtain statistical mode of study_on_minimal_growthrate_result_1').
has_part(study_on_minimal_growthrate,trial_on_minimal_growthrate_ylr209c).
trial(trial_on_minimal_growthrate_ylr209c).
has_agent(trial_on_minimal_growthrate_ylr209c,ylr209c).
strain(ylr209c).
has_proposition(trial_on_minimal_growthrate_ylr209c_1,trial_on_minimal_growthrate_ylr209c_1_design).
design(trial_on_minimal_growthrate_ylr209c_1_design).
has_proposition(trial_on_minimal_growthrate_ylr209c_1_design,trial_on_minimal_growthrate_ylr209c_1_factor).
factor(trial_on_minimal_growthrate_ylr209c_1_factor).
has_representation(trial_on_minimal_growthrate_ylr209c_1_factor,'presence or absence of ylr209c').
has_input(trial_on_minimal_growthrate_ylr209c_1,trial_on_minimal_growthrate_ylr209c_1_data).
data(trial_on_minimal_growthrate_ylr209c_1_data).
has_part(trial_on_minimal_growthrate_ylr209c_1_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_ylr209c_1_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_ylr209c_1_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_ylr209c_1,'mar07-trial3_expt001-plate003').
plate('mar07-trial3_expt001-plate003').
has_proposition(trial_on_minimal_growthrate_ylr209c_1,trial_on_minimal_growthrate_ylr209c_1_result).
result(trial_on_minimal_growthrate_ylr209c_1_result).
has_part(trial_on_minimal_growthrate_ylr209c_1_result,trial_on_minimal_growthrate_ylr209c_1_result_1).
has_representation(trial_on_minimal_growthrate_ylr209c_1_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_ylr209c_1_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_ylr209c_1_result_1,trial_on_minimal_growthrate_ylr209c_1_result_1_proc).
procedure(trial_on_minimal_growthrate_ylr209c_1_result_1_proc).
has_representation(trial_on_minimal_growthrate_ylr209c_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ylr209c_1_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_ylr209c_1_result,trial_on_minimal_growthrate_ylr209c_1_result_2).
has_representation(trial_on_minimal_growthrate_ylr209c_1_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_ylr209c_1_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_ylr209c_1_result_2,trial_on_minimal_growthrate_ylr209c_1_result_2_proc).
procedure(trial_on_minimal_growthrate_ylr209c_1_result_2_proc).
has_representation(trial_on_minimal_growthrate_ylr209c_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ylr209c_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_ylr209c_2,trial_on_minimal_growthrate_ylr209c_2_design).
design(trial_on_minimal_growthrate_ylr209c_2_design).
has_proposition(trial_on_minimal_growthrate_ylr209c_2_design,trial_on_minimal_growthrate_ylr209c_2_factor).
factor(trial_on_minimal_growthrate_ylr209c_2_factor).
has_representation(trial_on_minimal_growthrate_ylr209c_2_factor,'presence or absence of ylr209c').
has_input(trial_on_minimal_growthrate_ylr209c_2,trial_on_minimal_growthrate_ylr209c_2_data).
data(trial_on_minimal_growthrate_ylr209c_2_data).
has_part(trial_on_minimal_growthrate_ylr209c_2_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_ylr209c_2_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_ylr209c_2_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_ylr209c_2,'mar07-trial3_expt001-plate004').
plate('mar07-trial3_expt001-plate004').
has_proposition(trial_on_minimal_growthrate_ylr209c_2,trial_on_minimal_growthrate_ylr209c_2_result).
result(trial_on_minimal_growthrate_ylr209c_2_result).
has_part(trial_on_minimal_growthrate_ylr209c_2_result,trial_on_minimal_growthrate_ylr209c_2_result_1).
has_representation(trial_on_minimal_growthrate_ylr209c_2_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_ylr209c_2_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_ylr209c_2_result_1,trial_on_minimal_growthrate_ylr209c_2_result_1_proc).
procedure(trial_on_minimal_growthrate_ylr209c_2_result_1_proc).
has_representation(trial_on_minimal_growthrate_ylr209c_2_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ylr209c_2_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_ylr209c_2_result,trial_on_minimal_growthrate_ylr209c_2_result_2).
has_representation(trial_on_minimal_growthrate_ylr209c_2_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_ylr209c_2_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_ylr209c_2_result_2,trial_on_minimal_growthrate_ylr209c_2_result_2_proc).
procedure(trial_on_minimal_growthrate_ylr209c_2_result_2_proc).
has_representation(trial_on_minimal_growthrate_ylr209c_2_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ylr209c_2_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_ylr209c_3,trial_on_minimal_growthrate_ylr209c_3_design).
design(trial_on_minimal_growthrate_ylr209c_3_design).
has_proposition(trial_on_minimal_growthrate_ylr209c_3_design,trial_on_minimal_growthrate_ylr209c_3_factor).
factor(trial_on_minimal_growthrate_ylr209c_3_factor).
has_representation(trial_on_minimal_growthrate_ylr209c_3_factor,'presence or absence of ylr209c').
has_input(trial_on_minimal_growthrate_ylr209c_3,trial_on_minimal_growthrate_ylr209c_3_data).
data(trial_on_minimal_growthrate_ylr209c_3_data).
has_part(trial_on_minimal_growthrate_ylr209c_3_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_ylr209c_3_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_ylr209c_3_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_ylr209c_3,'mar07-trial4_expt1-plate004').
plate('mar07-trial4_expt1-plate004').
has_proposition(trial_on_minimal_growthrate_ylr209c_3,trial_on_minimal_growthrate_ylr209c_3_result).
result(trial_on_minimal_growthrate_ylr209c_3_result).
has_part(trial_on_minimal_growthrate_ylr209c_3_result,trial_on_minimal_growthrate_ylr209c_3_result_1).
has_representation(trial_on_minimal_growthrate_ylr209c_3_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_ylr209c_3_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_ylr209c_3_result_1,trial_on_minimal_growthrate_ylr209c_3_result_1_proc).
procedure(trial_on_minimal_growthrate_ylr209c_3_result_1_proc).
has_representation(trial_on_minimal_growthrate_ylr209c_3_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ylr209c_3_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_ylr209c_3_result,trial_on_minimal_growthrate_ylr209c_3_result_2).
has_representation(trial_on_minimal_growthrate_ylr209c_3_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_ylr209c_3_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_ylr209c_3_result_2,trial_on_minimal_growthrate_ylr209c_3_result_2_proc).
procedure(trial_on_minimal_growthrate_ylr209c_3_result_2_proc).
has_representation(trial_on_minimal_growthrate_ylr209c_3_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ylr209c_3_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_ylr209c_4,trial_on_minimal_growthrate_ylr209c_4_design).
design(trial_on_minimal_growthrate_ylr209c_4_design).
has_proposition(trial_on_minimal_growthrate_ylr209c_4_design,trial_on_minimal_growthrate_ylr209c_4_factor).
factor(trial_on_minimal_growthrate_ylr209c_4_factor).
has_representation(trial_on_minimal_growthrate_ylr209c_4_factor,'presence or absence of ylr209c').
has_input(trial_on_minimal_growthrate_ylr209c_4,trial_on_minimal_growthrate_ylr209c_4_data).
data(trial_on_minimal_growthrate_ylr209c_4_data).
has_part(trial_on_minimal_growthrate_ylr209c_4_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_ylr209c_4_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_ylr209c_4_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_ylr209c_4,'mar07-trial4_expt1-plate005').
plate('mar07-trial4_expt1-plate005').
has_proposition(trial_on_minimal_growthrate_ylr209c_4,trial_on_minimal_growthrate_ylr209c_4_result).
result(trial_on_minimal_growthrate_ylr209c_4_result).
has_part(trial_on_minimal_growthrate_ylr209c_4_result,trial_on_minimal_growthrate_ylr209c_4_result_1).
has_representation(trial_on_minimal_growthrate_ylr209c_4_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_ylr209c_4_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_ylr209c_4_result_1,trial_on_minimal_growthrate_ylr209c_4_result_1_proc).
procedure(trial_on_minimal_growthrate_ylr209c_4_result_1_proc).
has_representation(trial_on_minimal_growthrate_ylr209c_4_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ylr209c_4_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_ylr209c_4_result,trial_on_minimal_growthrate_ylr209c_4_result_2).
has_representation(trial_on_minimal_growthrate_ylr209c_4_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_ylr209c_4_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_ylr209c_4_result_2,trial_on_minimal_growthrate_ylr209c_4_result_2_proc).
procedure(trial_on_minimal_growthrate_ylr209c_4_result_2_proc).
has_representation(trial_on_minimal_growthrate_ylr209c_4_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ylr209c_4_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_ylr209c_5,trial_on_minimal_growthrate_ylr209c_5_design).
design(trial_on_minimal_growthrate_ylr209c_5_design).
has_proposition(trial_on_minimal_growthrate_ylr209c_5_design,trial_on_minimal_growthrate_ylr209c_5_factor).
factor(trial_on_minimal_growthrate_ylr209c_5_factor).
has_representation(trial_on_minimal_growthrate_ylr209c_5_factor,'presence or absence of ylr209c').
has_input(trial_on_minimal_growthrate_ylr209c_5,trial_on_minimal_growthrate_ylr209c_5_data).
data(trial_on_minimal_growthrate_ylr209c_5_data).
has_part(trial_on_minimal_growthrate_ylr209c_5_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_ylr209c_5_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_ylr209c_5_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_ylr209c_5,'mar07-trial4_expt1-plate006').
plate('mar07-trial4_expt1-plate006').
has_proposition(trial_on_minimal_growthrate_ylr209c_5,trial_on_minimal_growthrate_ylr209c_5_result).
result(trial_on_minimal_growthrate_ylr209c_5_result).
has_part(trial_on_minimal_growthrate_ylr209c_5_result,trial_on_minimal_growthrate_ylr209c_5_result_1).
has_representation(trial_on_minimal_growthrate_ylr209c_5_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_ylr209c_5_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_ylr209c_5_result_1,trial_on_minimal_growthrate_ylr209c_5_result_1_proc).
procedure(trial_on_minimal_growthrate_ylr209c_5_result_1_proc).
has_representation(trial_on_minimal_growthrate_ylr209c_5_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ylr209c_5_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_ylr209c_5_result,trial_on_minimal_growthrate_ylr209c_5_result_2).
has_representation(trial_on_minimal_growthrate_ylr209c_5_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_ylr209c_5_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_ylr209c_5_result_2,trial_on_minimal_growthrate_ylr209c_5_result_2_proc).
procedure(trial_on_minimal_growthrate_ylr209c_5_result_2_proc).
has_representation(trial_on_minimal_growthrate_ylr209c_5_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ylr209c_5_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_ylr209c_6,trial_on_minimal_growthrate_ylr209c_6_design).
design(trial_on_minimal_growthrate_ylr209c_6_design).
has_proposition(trial_on_minimal_growthrate_ylr209c_6_design,trial_on_minimal_growthrate_ylr209c_6_factor).
factor(trial_on_minimal_growthrate_ylr209c_6_factor).
has_representation(trial_on_minimal_growthrate_ylr209c_6_factor,'presence or absence of ylr209c').
has_input(trial_on_minimal_growthrate_ylr209c_6,trial_on_minimal_growthrate_ylr209c_6_data).
data(trial_on_minimal_growthrate_ylr209c_6_data).
has_part(trial_on_minimal_growthrate_ylr209c_6_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_ylr209c_6_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_ylr209c_6_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_ylr209c_6,'mar07-trial6_expt001-plate001').
plate('mar07-trial6_expt001-plate001').
has_proposition(trial_on_minimal_growthrate_ylr209c_6,trial_on_minimal_growthrate_ylr209c_6_result).
result(trial_on_minimal_growthrate_ylr209c_6_result).
has_part(trial_on_minimal_growthrate_ylr209c_6_result,trial_on_minimal_growthrate_ylr209c_6_result_1).
has_representation(trial_on_minimal_growthrate_ylr209c_6_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_ylr209c_6_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_ylr209c_6_result_1,trial_on_minimal_growthrate_ylr209c_6_result_1_proc).
procedure(trial_on_minimal_growthrate_ylr209c_6_result_1_proc).
has_representation(trial_on_minimal_growthrate_ylr209c_6_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ylr209c_6_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_ylr209c_6_result,trial_on_minimal_growthrate_ylr209c_6_result_2).
has_representation(trial_on_minimal_growthrate_ylr209c_6_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_ylr209c_6_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_ylr209c_6_result_2,trial_on_minimal_growthrate_ylr209c_6_result_2_proc).
procedure(trial_on_minimal_growthrate_ylr209c_6_result_2_proc).
has_representation(trial_on_minimal_growthrate_ylr209c_6_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ylr209c_6_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_ylr209c_7,trial_on_minimal_growthrate_ylr209c_7_design).
design(trial_on_minimal_growthrate_ylr209c_7_design).
has_proposition(trial_on_minimal_growthrate_ylr209c_7_design,trial_on_minimal_growthrate_ylr209c_7_factor).
factor(trial_on_minimal_growthrate_ylr209c_7_factor).
has_representation(trial_on_minimal_growthrate_ylr209c_7_factor,'presence or absence of ylr209c').
has_input(trial_on_minimal_growthrate_ylr209c_7,trial_on_minimal_growthrate_ylr209c_7_data).
data(trial_on_minimal_growthrate_ylr209c_7_data).
has_part(trial_on_minimal_growthrate_ylr209c_7_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_ylr209c_7_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_ylr209c_7_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_ylr209c_7,'mar07-trial6_expt001-plate002').
plate('mar07-trial6_expt001-plate002').
has_proposition(trial_on_minimal_growthrate_ylr209c_7,trial_on_minimal_growthrate_ylr209c_7_result).
result(trial_on_minimal_growthrate_ylr209c_7_result).
has_part(trial_on_minimal_growthrate_ylr209c_7_result,trial_on_minimal_growthrate_ylr209c_7_result_1).
has_representation(trial_on_minimal_growthrate_ylr209c_7_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_ylr209c_7_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_ylr209c_7_result_1,trial_on_minimal_growthrate_ylr209c_7_result_1_proc).
procedure(trial_on_minimal_growthrate_ylr209c_7_result_1_proc).
has_representation(trial_on_minimal_growthrate_ylr209c_7_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ylr209c_7_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_ylr209c_7_result,trial_on_minimal_growthrate_ylr209c_7_result_2).
has_representation(trial_on_minimal_growthrate_ylr209c_7_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_ylr209c_7_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_ylr209c_7_result_2,trial_on_minimal_growthrate_ylr209c_7_result_2_proc).
procedure(trial_on_minimal_growthrate_ylr209c_7_result_2_proc).
has_representation(trial_on_minimal_growthrate_ylr209c_7_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ylr209c_7_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_ylr209c_8,trial_on_minimal_growthrate_ylr209c_8_design).
design(trial_on_minimal_growthrate_ylr209c_8_design).
has_proposition(trial_on_minimal_growthrate_ylr209c_8_design,trial_on_minimal_growthrate_ylr209c_8_factor).
factor(trial_on_minimal_growthrate_ylr209c_8_factor).
has_representation(trial_on_minimal_growthrate_ylr209c_8_factor,'presence or absence of ylr209c').
has_input(trial_on_minimal_growthrate_ylr209c_8,trial_on_minimal_growthrate_ylr209c_8_data).
data(trial_on_minimal_growthrate_ylr209c_8_data).
has_part(trial_on_minimal_growthrate_ylr209c_8_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_ylr209c_8_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_ylr209c_8_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_ylr209c_8,'mar07-trial6_expt001-plate004').
plate('mar07-trial6_expt001-plate004').
has_proposition(trial_on_minimal_growthrate_ylr209c_8,trial_on_minimal_growthrate_ylr209c_8_result).
result(trial_on_minimal_growthrate_ylr209c_8_result).
has_part(trial_on_minimal_growthrate_ylr209c_8_result,trial_on_minimal_growthrate_ylr209c_8_result_1).
has_representation(trial_on_minimal_growthrate_ylr209c_8_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_ylr209c_8_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_ylr209c_8_result_1,trial_on_minimal_growthrate_ylr209c_8_result_1_proc).
procedure(trial_on_minimal_growthrate_ylr209c_8_result_1_proc).
has_representation(trial_on_minimal_growthrate_ylr209c_8_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ylr209c_8_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_ylr209c_8_result,trial_on_minimal_growthrate_ylr209c_8_result_2).
has_representation(trial_on_minimal_growthrate_ylr209c_8_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_ylr209c_8_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_ylr209c_8_result_2,trial_on_minimal_growthrate_ylr209c_8_result_2_proc).
procedure(trial_on_minimal_growthrate_ylr209c_8_result_2_proc).
has_representation(trial_on_minimal_growthrate_ylr209c_8_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ylr209c_8_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_ylr209c_9,trial_on_minimal_growthrate_ylr209c_9_design).
design(trial_on_minimal_growthrate_ylr209c_9_design).
has_proposition(trial_on_minimal_growthrate_ylr209c_9_design,trial_on_minimal_growthrate_ylr209c_9_factor).
factor(trial_on_minimal_growthrate_ylr209c_9_factor).
has_representation(trial_on_minimal_growthrate_ylr209c_9_factor,'presence or absence of ylr209c').
has_input(trial_on_minimal_growthrate_ylr209c_9,trial_on_minimal_growthrate_ylr209c_9_data).
data(trial_on_minimal_growthrate_ylr209c_9_data).
has_part(trial_on_minimal_growthrate_ylr209c_9_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_ylr209c_9_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_ylr209c_9_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_ylr209c_9,'mar07-trial6_expt001-plate006').
plate('mar07-trial6_expt001-plate006').
has_proposition(trial_on_minimal_growthrate_ylr209c_9,trial_on_minimal_growthrate_ylr209c_9_result).
result(trial_on_minimal_growthrate_ylr209c_9_result).
has_part(trial_on_minimal_growthrate_ylr209c_9_result,trial_on_minimal_growthrate_ylr209c_9_result_1).
has_representation(trial_on_minimal_growthrate_ylr209c_9_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_ylr209c_9_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_ylr209c_9_result_1,trial_on_minimal_growthrate_ylr209c_9_result_1_proc).
procedure(trial_on_minimal_growthrate_ylr209c_9_result_1_proc).
has_representation(trial_on_minimal_growthrate_ylr209c_9_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ylr209c_9_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_ylr209c_9_result,trial_on_minimal_growthrate_ylr209c_9_result_2).
has_representation(trial_on_minimal_growthrate_ylr209c_9_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_ylr209c_9_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_ylr209c_9_result_2,trial_on_minimal_growthrate_ylr209c_9_result_2_proc).
procedure(trial_on_minimal_growthrate_ylr209c_9_result_2_proc).
has_representation(trial_on_minimal_growthrate_ylr209c_9_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ylr209c_9_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_ylr209c_10,trial_on_minimal_growthrate_ylr209c_10_design).
design(trial_on_minimal_growthrate_ylr209c_10_design).
has_proposition(trial_on_minimal_growthrate_ylr209c_10_design,trial_on_minimal_growthrate_ylr209c_10_factor).
factor(trial_on_minimal_growthrate_ylr209c_10_factor).
has_representation(trial_on_minimal_growthrate_ylr209c_10_factor,'presence or absence of ylr209c').
has_input(trial_on_minimal_growthrate_ylr209c_10,trial_on_minimal_growthrate_ylr209c_10_data).
data(trial_on_minimal_growthrate_ylr209c_10_data).
has_part(trial_on_minimal_growthrate_ylr209c_10_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_ylr209c_10_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_ylr209c_10_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_ylr209c_10,'mar07-trial6_expt001-plate007').
plate('mar07-trial6_expt001-plate007').
has_proposition(trial_on_minimal_growthrate_ylr209c_10,trial_on_minimal_growthrate_ylr209c_10_result).
result(trial_on_minimal_growthrate_ylr209c_10_result).
has_part(trial_on_minimal_growthrate_ylr209c_10_result,trial_on_minimal_growthrate_ylr209c_10_result_1).
has_representation(trial_on_minimal_growthrate_ylr209c_10_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_ylr209c_10_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_ylr209c_10_result_1,trial_on_minimal_growthrate_ylr209c_10_result_1_proc).
procedure(trial_on_minimal_growthrate_ylr209c_10_result_1_proc).
has_representation(trial_on_minimal_growthrate_ylr209c_10_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ylr209c_10_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_ylr209c_10_result,trial_on_minimal_growthrate_ylr209c_10_result_2).
has_representation(trial_on_minimal_growthrate_ylr209c_10_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_ylr209c_10_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_ylr209c_10_result_2,trial_on_minimal_growthrate_ylr209c_10_result_2_proc).
procedure(trial_on_minimal_growthrate_ylr209c_10_result_2_proc).
has_representation(trial_on_minimal_growthrate_ylr209c_10_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ylr209c_10_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_ylr209c_11,trial_on_minimal_growthrate_ylr209c_11_design).
design(trial_on_minimal_growthrate_ylr209c_11_design).
has_proposition(trial_on_minimal_growthrate_ylr209c_11_design,trial_on_minimal_growthrate_ylr209c_11_factor).
factor(trial_on_minimal_growthrate_ylr209c_11_factor).
has_representation(trial_on_minimal_growthrate_ylr209c_11_factor,'presence or absence of ylr209c').
has_input(trial_on_minimal_growthrate_ylr209c_11,trial_on_minimal_growthrate_ylr209c_11_data).
data(trial_on_minimal_growthrate_ylr209c_11_data).
has_part(trial_on_minimal_growthrate_ylr209c_11_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_ylr209c_11_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_ylr209c_11_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_ylr209c_11,'mar07-trial6_expt001-plate008').
plate('mar07-trial6_expt001-plate008').
has_proposition(trial_on_minimal_growthrate_ylr209c_11,trial_on_minimal_growthrate_ylr209c_11_result).
result(trial_on_minimal_growthrate_ylr209c_11_result).
has_part(trial_on_minimal_growthrate_ylr209c_11_result,trial_on_minimal_growthrate_ylr209c_11_result_1).
has_representation(trial_on_minimal_growthrate_ylr209c_11_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_ylr209c_11_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_ylr209c_11_result_1,trial_on_minimal_growthrate_ylr209c_11_result_1_proc).
procedure(trial_on_minimal_growthrate_ylr209c_11_result_1_proc).
has_representation(trial_on_minimal_growthrate_ylr209c_11_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ylr209c_11_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_ylr209c_11_result,trial_on_minimal_growthrate_ylr209c_11_result_2).
has_representation(trial_on_minimal_growthrate_ylr209c_11_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_ylr209c_11_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_ylr209c_11_result_2,trial_on_minimal_growthrate_ylr209c_11_result_2_proc).
procedure(trial_on_minimal_growthrate_ylr209c_11_result_2_proc).
has_representation(trial_on_minimal_growthrate_ylr209c_11_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ylr209c_11_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_ylr209c_12,trial_on_minimal_growthrate_ylr209c_12_design).
design(trial_on_minimal_growthrate_ylr209c_12_design).
has_proposition(trial_on_minimal_growthrate_ylr209c_12_design,trial_on_minimal_growthrate_ylr209c_12_factor).
factor(trial_on_minimal_growthrate_ylr209c_12_factor).
has_representation(trial_on_minimal_growthrate_ylr209c_12_factor,'presence or absence of ylr209c').
has_input(trial_on_minimal_growthrate_ylr209c_12,trial_on_minimal_growthrate_ylr209c_12_data).
data(trial_on_minimal_growthrate_ylr209c_12_data).
has_part(trial_on_minimal_growthrate_ylr209c_12_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_ylr209c_12_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_ylr209c_12_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_ylr209c_12,'mar07-trial9_expt001-plate005').
plate('mar07-trial9_expt001-plate005').
has_proposition(trial_on_minimal_growthrate_ylr209c_12,trial_on_minimal_growthrate_ylr209c_12_result).
result(trial_on_minimal_growthrate_ylr209c_12_result).
has_part(trial_on_minimal_growthrate_ylr209c_12_result,trial_on_minimal_growthrate_ylr209c_12_result_1).
has_representation(trial_on_minimal_growthrate_ylr209c_12_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_ylr209c_12_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_ylr209c_12_result_1,trial_on_minimal_growthrate_ylr209c_12_result_1_proc).
procedure(trial_on_minimal_growthrate_ylr209c_12_result_1_proc).
has_representation(trial_on_minimal_growthrate_ylr209c_12_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ylr209c_12_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_ylr209c_12_result,trial_on_minimal_growthrate_ylr209c_12_result_2).
has_representation(trial_on_minimal_growthrate_ylr209c_12_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_ylr209c_12_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_ylr209c_12_result_2,trial_on_minimal_growthrate_ylr209c_12_result_2_proc).
procedure(trial_on_minimal_growthrate_ylr209c_12_result_2_proc).
has_representation(trial_on_minimal_growthrate_ylr209c_12_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ylr209c_12_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_ylr209c,trial_on_minimal_growthrate_ylr209c_results).
result(trial_on_minimal_growthrate_ylr209c_results).
has_part(trial_on_minimal_growthrate_ylr209c_results,trial_on_minimal_growthrate_ylr209c_results_1).
has_representation(trial_on_minimal_growthrate_ylr209c_results_1,'median of knockout medians missing ylr209c').
text_representation('median of knockout medians missing ylr209c').
has_proposition(trial_on_minimal_growthrate_ylr209c_results_1,trial_on_minimal_growthrate_ylr209c_results_1_proc).
procedure(trial_on_minimal_growthrate_ylr209c_results_1_proc).
has_proposition(trial_on_minimal_growthrate_ylr209c_results_1_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_minimal_growthrate_ylr209c_results,trial_on_minimal_growthrate_ylr209c_results_2).
has_representation(trial_on_minimal_growthrate_ylr209c_results_2,'median of wild type medians').
text_representation('median of wild type medians').
has_proposition(trial_on_minimal_growthrate_ylr209c_results_2,trial_on_minimal_growthrate_ylr209c_results_2_proc).
procedure(trial_on_minimal_growthrate_ylr209c_results_2_proc).
has_proposition(trial_on_minimal_growthrate_ylr209c_results_2_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_minimal_growthrate_ylr209c_results,trial_on_minimal_growthrate_ylr209c_results_3).
has_representation(trial_on_minimal_growthrate_ylr209c_results_3,'difference between trial_on_minimal_growthrate_ylr209c_results_1 and trial_on_minimal_growthrate_ylr209c_results_2').
text_representation('difference between trial_on_minimal_growthrate_ylr209c_results_1 and trial_on_minimal_growthrate_ylr209c_results_2').
has_proposition(study_on_minimal_growthrate,study_on_minimal_growthrate_result).
result(study_on_minimal_growthrate_result).
has_part(study_on_minimal_growthrate_result,study_on_minimal_growthrate_result_1).
has_representation(study_on_minimal_growthrate_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_minimal_growthrate_result_1,'results/wm_km_growth_rate.csv').
link('results/wm_km_growth_rate.csv').
has_proposition(study_on_minimal_growthrate_result_1,study_on_minimal_growthrate_result_1_proc).
procedure(study_on_minimal_growthrate_result_1_proc).
has_proposition(study_on_minimal_growthrate_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_minimal_growthrate_result,study_on_minimal_growthrate_result_2).
has_representation(study_on_minimal_growthrate_result_2,'bar graph (histogram) plotting study_on_minimal_growthrate_result_1').
text_representation('bar graph (histogram) plotting study_on_minimal_growthrate_result_1').
has_proposition(study_on_minimal_growthrate_result_2,'results/km_wm_growth_rate1.tiff').
link('results/km_wm_growth_rate1.tiff').
has_proposition(study_on_minimal_growthrate_result_2,'results/km_wm_growth_rate2.tiff').
link('results/km_wm_growth_rate2.tiff').
has_proposition(study_on_minimal_growthrate_result_2,'results/overlayed_growth_rate.tiff').
link('results/overlayed_growth_rate.tiff').
has_proposition(study_on_minimal_growthrate_result_2,study_on_minimal_growthrate_result_2_proc).
procedure(study_on_minimal_growthrate_result_2_proc).
has_proposition(study_on_minimal_growthrate_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_minimal_growthrate,study_on_minimal_growthrate_conclusion).
conclusion(study_on_minimal_growthrate_conclusion).
has_representation(study_on_minimal_growthrate_conclusion,'The knockouts had on average a higher growth rate in minimal than the wild type').
text_representation('The knockouts had on average a higher growth rate in minimal than the wild type').
has_proposition(study_on_minimal_growthrate_conclusion,'obtain statistical mode of study_on_minimal_growthrate_result_1').
procedure('obtain statistical mode of study_on_minimal_growthrate_result_1').
text_representation('obtain statistical mode of study_on_minimal_growthrate_result_1').
has_part(study_on_minimal_growthrate,trial_on_minimal_growthrate_yjl060w).
trial(trial_on_minimal_growthrate_yjl060w).
has_agent(trial_on_minimal_growthrate_yjl060w,yjl060w).
strain(yjl060w).
has_proposition(trial_on_minimal_growthrate_yjl060w_1,trial_on_minimal_growthrate_yjl060w_1_design).
design(trial_on_minimal_growthrate_yjl060w_1_design).
has_proposition(trial_on_minimal_growthrate_yjl060w_1_design,trial_on_minimal_growthrate_yjl060w_1_factor).
factor(trial_on_minimal_growthrate_yjl060w_1_factor).
has_representation(trial_on_minimal_growthrate_yjl060w_1_factor,'presence or absence of yjl060w').
has_input(trial_on_minimal_growthrate_yjl060w_1,trial_on_minimal_growthrate_yjl060w_1_data).
data(trial_on_minimal_growthrate_yjl060w_1_data).
has_part(trial_on_minimal_growthrate_yjl060w_1_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_yjl060w_1_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_yjl060w_1_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_yjl060w_1,'jan07-lyss1_expt001-plate004').
plate('jan07-lyss1_expt001-plate004').
has_proposition(trial_on_minimal_growthrate_yjl060w_1,trial_on_minimal_growthrate_yjl060w_1_result).
result(trial_on_minimal_growthrate_yjl060w_1_result).
has_part(trial_on_minimal_growthrate_yjl060w_1_result,trial_on_minimal_growthrate_yjl060w_1_result_1).
has_representation(trial_on_minimal_growthrate_yjl060w_1_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_yjl060w_1_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_yjl060w_1_result_1,trial_on_minimal_growthrate_yjl060w_1_result_1_proc).
procedure(trial_on_minimal_growthrate_yjl060w_1_result_1_proc).
has_representation(trial_on_minimal_growthrate_yjl060w_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_yjl060w_1_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_yjl060w_1_result,trial_on_minimal_growthrate_yjl060w_1_result_2).
has_representation(trial_on_minimal_growthrate_yjl060w_1_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_yjl060w_1_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_yjl060w_1_result_2,trial_on_minimal_growthrate_yjl060w_1_result_2_proc).
procedure(trial_on_minimal_growthrate_yjl060w_1_result_2_proc).
has_representation(trial_on_minimal_growthrate_yjl060w_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_yjl060w_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_yjl060w_2,trial_on_minimal_growthrate_yjl060w_2_design).
design(trial_on_minimal_growthrate_yjl060w_2_design).
has_proposition(trial_on_minimal_growthrate_yjl060w_2_design,trial_on_minimal_growthrate_yjl060w_2_factor).
factor(trial_on_minimal_growthrate_yjl060w_2_factor).
has_representation(trial_on_minimal_growthrate_yjl060w_2_factor,'presence or absence of yjl060w').
has_input(trial_on_minimal_growthrate_yjl060w_2,trial_on_minimal_growthrate_yjl060w_2_data).
data(trial_on_minimal_growthrate_yjl060w_2_data).
has_part(trial_on_minimal_growthrate_yjl060w_2_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_yjl060w_2_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_yjl060w_2_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_yjl060w_2,'jan07-lyss1_expt001-plate005').
plate('jan07-lyss1_expt001-plate005').
has_proposition(trial_on_minimal_growthrate_yjl060w_2,trial_on_minimal_growthrate_yjl060w_2_result).
result(trial_on_minimal_growthrate_yjl060w_2_result).
has_part(trial_on_minimal_growthrate_yjl060w_2_result,trial_on_minimal_growthrate_yjl060w_2_result_1).
has_representation(trial_on_minimal_growthrate_yjl060w_2_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_yjl060w_2_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_yjl060w_2_result_1,trial_on_minimal_growthrate_yjl060w_2_result_1_proc).
procedure(trial_on_minimal_growthrate_yjl060w_2_result_1_proc).
has_representation(trial_on_minimal_growthrate_yjl060w_2_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_yjl060w_2_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_yjl060w_2_result,trial_on_minimal_growthrate_yjl060w_2_result_2).
has_representation(trial_on_minimal_growthrate_yjl060w_2_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_yjl060w_2_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_yjl060w_2_result_2,trial_on_minimal_growthrate_yjl060w_2_result_2_proc).
procedure(trial_on_minimal_growthrate_yjl060w_2_result_2_proc).
has_representation(trial_on_minimal_growthrate_yjl060w_2_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_yjl060w_2_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_yjl060w_3,trial_on_minimal_growthrate_yjl060w_3_design).
design(trial_on_minimal_growthrate_yjl060w_3_design).
has_proposition(trial_on_minimal_growthrate_yjl060w_3_design,trial_on_minimal_growthrate_yjl060w_3_factor).
factor(trial_on_minimal_growthrate_yjl060w_3_factor).
has_representation(trial_on_minimal_growthrate_yjl060w_3_factor,'presence or absence of yjl060w').
has_input(trial_on_minimal_growthrate_yjl060w_3,trial_on_minimal_growthrate_yjl060w_3_data).
data(trial_on_minimal_growthrate_yjl060w_3_data).
has_part(trial_on_minimal_growthrate_yjl060w_3_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_yjl060w_3_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_yjl060w_3_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_yjl060w_3,'jan07-lyss1_expt001-plate006').
plate('jan07-lyss1_expt001-plate006').
has_proposition(trial_on_minimal_growthrate_yjl060w_3,trial_on_minimal_growthrate_yjl060w_3_result).
result(trial_on_minimal_growthrate_yjl060w_3_result).
has_part(trial_on_minimal_growthrate_yjl060w_3_result,trial_on_minimal_growthrate_yjl060w_3_result_1).
has_representation(trial_on_minimal_growthrate_yjl060w_3_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_yjl060w_3_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_yjl060w_3_result_1,trial_on_minimal_growthrate_yjl060w_3_result_1_proc).
procedure(trial_on_minimal_growthrate_yjl060w_3_result_1_proc).
has_representation(trial_on_minimal_growthrate_yjl060w_3_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_yjl060w_3_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_yjl060w_3_result,trial_on_minimal_growthrate_yjl060w_3_result_2).
has_representation(trial_on_minimal_growthrate_yjl060w_3_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_yjl060w_3_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_yjl060w_3_result_2,trial_on_minimal_growthrate_yjl060w_3_result_2_proc).
procedure(trial_on_minimal_growthrate_yjl060w_3_result_2_proc).
has_representation(trial_on_minimal_growthrate_yjl060w_3_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_yjl060w_3_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_yjl060w,trial_on_minimal_growthrate_yjl060w_results).
result(trial_on_minimal_growthrate_yjl060w_results).
has_part(trial_on_minimal_growthrate_yjl060w_results,trial_on_minimal_growthrate_yjl060w_results_1).
has_representation(trial_on_minimal_growthrate_yjl060w_results_1,'median of knockout medians missing yjl060w').
text_representation('median of knockout medians missing yjl060w').
has_proposition(trial_on_minimal_growthrate_yjl060w_results_1,trial_on_minimal_growthrate_yjl060w_results_1_proc).
procedure(trial_on_minimal_growthrate_yjl060w_results_1_proc).
has_proposition(trial_on_minimal_growthrate_yjl060w_results_1_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_minimal_growthrate_yjl060w_results,trial_on_minimal_growthrate_yjl060w_results_2).
has_representation(trial_on_minimal_growthrate_yjl060w_results_2,'median of wild type medians').
text_representation('median of wild type medians').
has_proposition(trial_on_minimal_growthrate_yjl060w_results_2,trial_on_minimal_growthrate_yjl060w_results_2_proc).
procedure(trial_on_minimal_growthrate_yjl060w_results_2_proc).
has_proposition(trial_on_minimal_growthrate_yjl060w_results_2_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_minimal_growthrate_yjl060w_results,trial_on_minimal_growthrate_yjl060w_results_3).
has_representation(trial_on_minimal_growthrate_yjl060w_results_3,'difference between trial_on_minimal_growthrate_yjl060w_results_1 and trial_on_minimal_growthrate_yjl060w_results_2').
text_representation('difference between trial_on_minimal_growthrate_yjl060w_results_1 and trial_on_minimal_growthrate_yjl060w_results_2').
has_proposition(study_on_minimal_growthrate,study_on_minimal_growthrate_result).
result(study_on_minimal_growthrate_result).
has_part(study_on_minimal_growthrate_result,study_on_minimal_growthrate_result_1).
has_representation(study_on_minimal_growthrate_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_minimal_growthrate_result_1,'results/wm_km_growth_rate.csv').
link('results/wm_km_growth_rate.csv').
has_proposition(study_on_minimal_growthrate_result_1,study_on_minimal_growthrate_result_1_proc).
procedure(study_on_minimal_growthrate_result_1_proc).
has_proposition(study_on_minimal_growthrate_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_minimal_growthrate_result,study_on_minimal_growthrate_result_2).
has_representation(study_on_minimal_growthrate_result_2,'bar graph (histogram) plotting study_on_minimal_growthrate_result_1').
text_representation('bar graph (histogram) plotting study_on_minimal_growthrate_result_1').
has_proposition(study_on_minimal_growthrate_result_2,'results/km_wm_growth_rate1.tiff').
link('results/km_wm_growth_rate1.tiff').
has_proposition(study_on_minimal_growthrate_result_2,'results/km_wm_growth_rate2.tiff').
link('results/km_wm_growth_rate2.tiff').
has_proposition(study_on_minimal_growthrate_result_2,'results/overlayed_growth_rate.tiff').
link('results/overlayed_growth_rate.tiff').
has_proposition(study_on_minimal_growthrate_result_2,study_on_minimal_growthrate_result_2_proc).
procedure(study_on_minimal_growthrate_result_2_proc).
has_proposition(study_on_minimal_growthrate_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_minimal_growthrate,study_on_minimal_growthrate_conclusion).
conclusion(study_on_minimal_growthrate_conclusion).
has_representation(study_on_minimal_growthrate_conclusion,'The knockouts had on average a higher growth rate in minimal than the wild type').
text_representation('The knockouts had on average a higher growth rate in minimal than the wild type').
has_proposition(study_on_minimal_growthrate_conclusion,'obtain statistical mode of study_on_minimal_growthrate_result_1').
procedure('obtain statistical mode of study_on_minimal_growthrate_result_1').
text_representation('obtain statistical mode of study_on_minimal_growthrate_result_1').
has_part(study_on_minimal_growthrate,trial_on_minimal_growthrate_yll060c).
trial(trial_on_minimal_growthrate_yll060c).
has_agent(trial_on_minimal_growthrate_yll060c,yll060c).
strain(yll060c).
has_proposition(trial_on_minimal_growthrate_yll060c_1,trial_on_minimal_growthrate_yll060c_1_design).
design(trial_on_minimal_growthrate_yll060c_1_design).
has_proposition(trial_on_minimal_growthrate_yll060c_1_design,trial_on_minimal_growthrate_yll060c_1_factor).
factor(trial_on_minimal_growthrate_yll060c_1_factor).
has_representation(trial_on_minimal_growthrate_yll060c_1_factor,'presence or absence of yll060c').
has_input(trial_on_minimal_growthrate_yll060c_1,trial_on_minimal_growthrate_yll060c_1_data).
data(trial_on_minimal_growthrate_yll060c_1_data).
has_part(trial_on_minimal_growthrate_yll060c_1_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_yll060c_1_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_yll060c_1_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_yll060c_1,'mar07-trial4_expt1-plate001').
plate('mar07-trial4_expt1-plate001').
has_proposition(trial_on_minimal_growthrate_yll060c_1,trial_on_minimal_growthrate_yll060c_1_result).
result(trial_on_minimal_growthrate_yll060c_1_result).
has_part(trial_on_minimal_growthrate_yll060c_1_result,trial_on_minimal_growthrate_yll060c_1_result_1).
has_representation(trial_on_minimal_growthrate_yll060c_1_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_yll060c_1_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_yll060c_1_result_1,trial_on_minimal_growthrate_yll060c_1_result_1_proc).
procedure(trial_on_minimal_growthrate_yll060c_1_result_1_proc).
has_representation(trial_on_minimal_growthrate_yll060c_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_yll060c_1_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_yll060c_1_result,trial_on_minimal_growthrate_yll060c_1_result_2).
has_representation(trial_on_minimal_growthrate_yll060c_1_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_yll060c_1_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_yll060c_1_result_2,trial_on_minimal_growthrate_yll060c_1_result_2_proc).
procedure(trial_on_minimal_growthrate_yll060c_1_result_2_proc).
has_representation(trial_on_minimal_growthrate_yll060c_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_yll060c_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_yll060c_2,trial_on_minimal_growthrate_yll060c_2_design).
design(trial_on_minimal_growthrate_yll060c_2_design).
has_proposition(trial_on_minimal_growthrate_yll060c_2_design,trial_on_minimal_growthrate_yll060c_2_factor).
factor(trial_on_minimal_growthrate_yll060c_2_factor).
has_representation(trial_on_minimal_growthrate_yll060c_2_factor,'presence or absence of yll060c').
has_input(trial_on_minimal_growthrate_yll060c_2,trial_on_minimal_growthrate_yll060c_2_data).
data(trial_on_minimal_growthrate_yll060c_2_data).
has_part(trial_on_minimal_growthrate_yll060c_2_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_yll060c_2_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_yll060c_2_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_yll060c_2,'mar07-trial4_expt1-plate002').
plate('mar07-trial4_expt1-plate002').
has_proposition(trial_on_minimal_growthrate_yll060c_2,trial_on_minimal_growthrate_yll060c_2_result).
result(trial_on_minimal_growthrate_yll060c_2_result).
has_part(trial_on_minimal_growthrate_yll060c_2_result,trial_on_minimal_growthrate_yll060c_2_result_1).
has_representation(trial_on_minimal_growthrate_yll060c_2_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_yll060c_2_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_yll060c_2_result_1,trial_on_minimal_growthrate_yll060c_2_result_1_proc).
procedure(trial_on_minimal_growthrate_yll060c_2_result_1_proc).
has_representation(trial_on_minimal_growthrate_yll060c_2_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_yll060c_2_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_yll060c_2_result,trial_on_minimal_growthrate_yll060c_2_result_2).
has_representation(trial_on_minimal_growthrate_yll060c_2_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_yll060c_2_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_yll060c_2_result_2,trial_on_minimal_growthrate_yll060c_2_result_2_proc).
procedure(trial_on_minimal_growthrate_yll060c_2_result_2_proc).
has_representation(trial_on_minimal_growthrate_yll060c_2_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_yll060c_2_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_yll060c_3,trial_on_minimal_growthrate_yll060c_3_design).
design(trial_on_minimal_growthrate_yll060c_3_design).
has_proposition(trial_on_minimal_growthrate_yll060c_3_design,trial_on_minimal_growthrate_yll060c_3_factor).
factor(trial_on_minimal_growthrate_yll060c_3_factor).
has_representation(trial_on_minimal_growthrate_yll060c_3_factor,'presence or absence of yll060c').
has_input(trial_on_minimal_growthrate_yll060c_3,trial_on_minimal_growthrate_yll060c_3_data).
data(trial_on_minimal_growthrate_yll060c_3_data).
has_part(trial_on_minimal_growthrate_yll060c_3_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_yll060c_3_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_yll060c_3_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_yll060c_3,'mar07-trial5_expt001-plate005').
plate('mar07-trial5_expt001-plate005').
has_proposition(trial_on_minimal_growthrate_yll060c_3,trial_on_minimal_growthrate_yll060c_3_result).
result(trial_on_minimal_growthrate_yll060c_3_result).
has_part(trial_on_minimal_growthrate_yll060c_3_result,trial_on_minimal_growthrate_yll060c_3_result_1).
has_representation(trial_on_minimal_growthrate_yll060c_3_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_yll060c_3_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_yll060c_3_result_1,trial_on_minimal_growthrate_yll060c_3_result_1_proc).
procedure(trial_on_minimal_growthrate_yll060c_3_result_1_proc).
has_representation(trial_on_minimal_growthrate_yll060c_3_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_yll060c_3_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_yll060c_3_result,trial_on_minimal_growthrate_yll060c_3_result_2).
has_representation(trial_on_minimal_growthrate_yll060c_3_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_yll060c_3_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_yll060c_3_result_2,trial_on_minimal_growthrate_yll060c_3_result_2_proc).
procedure(trial_on_minimal_growthrate_yll060c_3_result_2_proc).
has_representation(trial_on_minimal_growthrate_yll060c_3_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_yll060c_3_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_yll060c_4,trial_on_minimal_growthrate_yll060c_4_design).
design(trial_on_minimal_growthrate_yll060c_4_design).
has_proposition(trial_on_minimal_growthrate_yll060c_4_design,trial_on_minimal_growthrate_yll060c_4_factor).
factor(trial_on_minimal_growthrate_yll060c_4_factor).
has_representation(trial_on_minimal_growthrate_yll060c_4_factor,'presence or absence of yll060c').
has_input(trial_on_minimal_growthrate_yll060c_4,trial_on_minimal_growthrate_yll060c_4_data).
data(trial_on_minimal_growthrate_yll060c_4_data).
has_part(trial_on_minimal_growthrate_yll060c_4_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_yll060c_4_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_yll060c_4_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_yll060c_4,'mar07-trial9_expt001-plate001').
plate('mar07-trial9_expt001-plate001').
has_proposition(trial_on_minimal_growthrate_yll060c_4,trial_on_minimal_growthrate_yll060c_4_result).
result(trial_on_minimal_growthrate_yll060c_4_result).
has_part(trial_on_minimal_growthrate_yll060c_4_result,trial_on_minimal_growthrate_yll060c_4_result_1).
has_representation(trial_on_minimal_growthrate_yll060c_4_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_yll060c_4_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_yll060c_4_result_1,trial_on_minimal_growthrate_yll060c_4_result_1_proc).
procedure(trial_on_minimal_growthrate_yll060c_4_result_1_proc).
has_representation(trial_on_minimal_growthrate_yll060c_4_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_yll060c_4_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_yll060c_4_result,trial_on_minimal_growthrate_yll060c_4_result_2).
has_representation(trial_on_minimal_growthrate_yll060c_4_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_yll060c_4_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_yll060c_4_result_2,trial_on_minimal_growthrate_yll060c_4_result_2_proc).
procedure(trial_on_minimal_growthrate_yll060c_4_result_2_proc).
has_representation(trial_on_minimal_growthrate_yll060c_4_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_yll060c_4_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_yll060c_5,trial_on_minimal_growthrate_yll060c_5_design).
design(trial_on_minimal_growthrate_yll060c_5_design).
has_proposition(trial_on_minimal_growthrate_yll060c_5_design,trial_on_minimal_growthrate_yll060c_5_factor).
factor(trial_on_minimal_growthrate_yll060c_5_factor).
has_representation(trial_on_minimal_growthrate_yll060c_5_factor,'presence or absence of yll060c').
has_input(trial_on_minimal_growthrate_yll060c_5,trial_on_minimal_growthrate_yll060c_5_data).
data(trial_on_minimal_growthrate_yll060c_5_data).
has_part(trial_on_minimal_growthrate_yll060c_5_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_yll060c_5_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_yll060c_5_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_yll060c_5,'mar07-trial9_expt001-plate002').
plate('mar07-trial9_expt001-plate002').
has_proposition(trial_on_minimal_growthrate_yll060c_5,trial_on_minimal_growthrate_yll060c_5_result).
result(trial_on_minimal_growthrate_yll060c_5_result).
has_part(trial_on_minimal_growthrate_yll060c_5_result,trial_on_minimal_growthrate_yll060c_5_result_1).
has_representation(trial_on_minimal_growthrate_yll060c_5_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_yll060c_5_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_yll060c_5_result_1,trial_on_minimal_growthrate_yll060c_5_result_1_proc).
procedure(trial_on_minimal_growthrate_yll060c_5_result_1_proc).
has_representation(trial_on_minimal_growthrate_yll060c_5_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_yll060c_5_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_yll060c_5_result,trial_on_minimal_growthrate_yll060c_5_result_2).
has_representation(trial_on_minimal_growthrate_yll060c_5_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_yll060c_5_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_yll060c_5_result_2,trial_on_minimal_growthrate_yll060c_5_result_2_proc).
procedure(trial_on_minimal_growthrate_yll060c_5_result_2_proc).
has_representation(trial_on_minimal_growthrate_yll060c_5_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_yll060c_5_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_yll060c,trial_on_minimal_growthrate_yll060c_results).
result(trial_on_minimal_growthrate_yll060c_results).
has_part(trial_on_minimal_growthrate_yll060c_results,trial_on_minimal_growthrate_yll060c_results_1).
has_representation(trial_on_minimal_growthrate_yll060c_results_1,'median of knockout medians missing yll060c').
text_representation('median of knockout medians missing yll060c').
has_proposition(trial_on_minimal_growthrate_yll060c_results_1,trial_on_minimal_growthrate_yll060c_results_1_proc).
procedure(trial_on_minimal_growthrate_yll060c_results_1_proc).
has_proposition(trial_on_minimal_growthrate_yll060c_results_1_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_minimal_growthrate_yll060c_results,trial_on_minimal_growthrate_yll060c_results_2).
has_representation(trial_on_minimal_growthrate_yll060c_results_2,'median of wild type medians').
text_representation('median of wild type medians').
has_proposition(trial_on_minimal_growthrate_yll060c_results_2,trial_on_minimal_growthrate_yll060c_results_2_proc).
procedure(trial_on_minimal_growthrate_yll060c_results_2_proc).
has_proposition(trial_on_minimal_growthrate_yll060c_results_2_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_minimal_growthrate_yll060c_results,trial_on_minimal_growthrate_yll060c_results_3).
has_representation(trial_on_minimal_growthrate_yll060c_results_3,'difference between trial_on_minimal_growthrate_yll060c_results_1 and trial_on_minimal_growthrate_yll060c_results_2').
text_representation('difference between trial_on_minimal_growthrate_yll060c_results_1 and trial_on_minimal_growthrate_yll060c_results_2').
has_proposition(study_on_minimal_growthrate,study_on_minimal_growthrate_result).
result(study_on_minimal_growthrate_result).
has_part(study_on_minimal_growthrate_result,study_on_minimal_growthrate_result_1).
has_representation(study_on_minimal_growthrate_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_minimal_growthrate_result_1,'results/wm_km_growth_rate.csv').
link('results/wm_km_growth_rate.csv').
has_proposition(study_on_minimal_growthrate_result_1,study_on_minimal_growthrate_result_1_proc).
procedure(study_on_minimal_growthrate_result_1_proc).
has_proposition(study_on_minimal_growthrate_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_minimal_growthrate_result,study_on_minimal_growthrate_result_2).
has_representation(study_on_minimal_growthrate_result_2,'bar graph (histogram) plotting study_on_minimal_growthrate_result_1').
text_representation('bar graph (histogram) plotting study_on_minimal_growthrate_result_1').
has_proposition(study_on_minimal_growthrate_result_2,'results/km_wm_growth_rate1.tiff').
link('results/km_wm_growth_rate1.tiff').
has_proposition(study_on_minimal_growthrate_result_2,'results/km_wm_growth_rate2.tiff').
link('results/km_wm_growth_rate2.tiff').
has_proposition(study_on_minimal_growthrate_result_2,'results/overlayed_growth_rate.tiff').
link('results/overlayed_growth_rate.tiff').
has_proposition(study_on_minimal_growthrate_result_2,study_on_minimal_growthrate_result_2_proc).
procedure(study_on_minimal_growthrate_result_2_proc).
has_proposition(study_on_minimal_growthrate_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_minimal_growthrate,study_on_minimal_growthrate_conclusion).
conclusion(study_on_minimal_growthrate_conclusion).
has_representation(study_on_minimal_growthrate_conclusion,'The knockouts had on average a higher growth rate in minimal than the wild type').
text_representation('The knockouts had on average a higher growth rate in minimal than the wild type').
has_proposition(study_on_minimal_growthrate_conclusion,'obtain statistical mode of study_on_minimal_growthrate_result_1').
procedure('obtain statistical mode of study_on_minimal_growthrate_result_1').
text_representation('obtain statistical mode of study_on_minimal_growthrate_result_1').
has_part(study_on_minimal_growthrate,trial_on_minimal_growthrate_ylr070c).
trial(trial_on_minimal_growthrate_ylr070c).
has_agent(trial_on_minimal_growthrate_ylr070c,ylr070c).
strain(ylr070c).
has_proposition(trial_on_minimal_growthrate_ylr070c_1,trial_on_minimal_growthrate_ylr070c_1_design).
design(trial_on_minimal_growthrate_ylr070c_1_design).
has_proposition(trial_on_minimal_growthrate_ylr070c_1_design,trial_on_minimal_growthrate_ylr070c_1_factor).
factor(trial_on_minimal_growthrate_ylr070c_1_factor).
has_representation(trial_on_minimal_growthrate_ylr070c_1_factor,'presence or absence of ylr070c').
has_input(trial_on_minimal_growthrate_ylr070c_1,trial_on_minimal_growthrate_ylr070c_1_data).
data(trial_on_minimal_growthrate_ylr070c_1_data).
has_part(trial_on_minimal_growthrate_ylr070c_1_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_ylr070c_1_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_ylr070c_1_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_ylr070c_1,'jan07-trial1_expt001-plate002').
plate('jan07-trial1_expt001-plate002').
has_proposition(trial_on_minimal_growthrate_ylr070c_1,trial_on_minimal_growthrate_ylr070c_1_result).
result(trial_on_minimal_growthrate_ylr070c_1_result).
has_part(trial_on_minimal_growthrate_ylr070c_1_result,trial_on_minimal_growthrate_ylr070c_1_result_1).
has_representation(trial_on_minimal_growthrate_ylr070c_1_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_ylr070c_1_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_ylr070c_1_result_1,trial_on_minimal_growthrate_ylr070c_1_result_1_proc).
procedure(trial_on_minimal_growthrate_ylr070c_1_result_1_proc).
has_representation(trial_on_minimal_growthrate_ylr070c_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ylr070c_1_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_ylr070c_1_result,trial_on_minimal_growthrate_ylr070c_1_result_2).
has_representation(trial_on_minimal_growthrate_ylr070c_1_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_ylr070c_1_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_ylr070c_1_result_2,trial_on_minimal_growthrate_ylr070c_1_result_2_proc).
procedure(trial_on_minimal_growthrate_ylr070c_1_result_2_proc).
has_representation(trial_on_minimal_growthrate_ylr070c_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ylr070c_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_ylr070c_2,trial_on_minimal_growthrate_ylr070c_2_design).
design(trial_on_minimal_growthrate_ylr070c_2_design).
has_proposition(trial_on_minimal_growthrate_ylr070c_2_design,trial_on_minimal_growthrate_ylr070c_2_factor).
factor(trial_on_minimal_growthrate_ylr070c_2_factor).
has_representation(trial_on_minimal_growthrate_ylr070c_2_factor,'presence or absence of ylr070c').
has_input(trial_on_minimal_growthrate_ylr070c_2,trial_on_minimal_growthrate_ylr070c_2_data).
data(trial_on_minimal_growthrate_ylr070c_2_data).
has_part(trial_on_minimal_growthrate_ylr070c_2_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_ylr070c_2_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_ylr070c_2_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_ylr070c_2,'jan07-trial1_expt001-plate003').
plate('jan07-trial1_expt001-plate003').
has_proposition(trial_on_minimal_growthrate_ylr070c_2,trial_on_minimal_growthrate_ylr070c_2_result).
result(trial_on_minimal_growthrate_ylr070c_2_result).
has_part(trial_on_minimal_growthrate_ylr070c_2_result,trial_on_minimal_growthrate_ylr070c_2_result_1).
has_representation(trial_on_minimal_growthrate_ylr070c_2_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_ylr070c_2_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_ylr070c_2_result_1,trial_on_minimal_growthrate_ylr070c_2_result_1_proc).
procedure(trial_on_minimal_growthrate_ylr070c_2_result_1_proc).
has_representation(trial_on_minimal_growthrate_ylr070c_2_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ylr070c_2_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_ylr070c_2_result,trial_on_minimal_growthrate_ylr070c_2_result_2).
has_representation(trial_on_minimal_growthrate_ylr070c_2_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_ylr070c_2_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_ylr070c_2_result_2,trial_on_minimal_growthrate_ylr070c_2_result_2_proc).
procedure(trial_on_minimal_growthrate_ylr070c_2_result_2_proc).
has_representation(trial_on_minimal_growthrate_ylr070c_2_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ylr070c_2_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_ylr070c_3,trial_on_minimal_growthrate_ylr070c_3_design).
design(trial_on_minimal_growthrate_ylr070c_3_design).
has_proposition(trial_on_minimal_growthrate_ylr070c_3_design,trial_on_minimal_growthrate_ylr070c_3_factor).
factor(trial_on_minimal_growthrate_ylr070c_3_factor).
has_representation(trial_on_minimal_growthrate_ylr070c_3_factor,'presence or absence of ylr070c').
has_input(trial_on_minimal_growthrate_ylr070c_3,trial_on_minimal_growthrate_ylr070c_3_data).
data(trial_on_minimal_growthrate_ylr070c_3_data).
has_part(trial_on_minimal_growthrate_ylr070c_3_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_ylr070c_3_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_ylr070c_3_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_ylr070c_3,'jan07-trial2_expt001-plate007').
plate('jan07-trial2_expt001-plate007').
has_proposition(trial_on_minimal_growthrate_ylr070c_3,trial_on_minimal_growthrate_ylr070c_3_result).
result(trial_on_minimal_growthrate_ylr070c_3_result).
has_part(trial_on_minimal_growthrate_ylr070c_3_result,trial_on_minimal_growthrate_ylr070c_3_result_1).
has_representation(trial_on_minimal_growthrate_ylr070c_3_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_ylr070c_3_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_ylr070c_3_result_1,trial_on_minimal_growthrate_ylr070c_3_result_1_proc).
procedure(trial_on_minimal_growthrate_ylr070c_3_result_1_proc).
has_representation(trial_on_minimal_growthrate_ylr070c_3_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ylr070c_3_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_ylr070c_3_result,trial_on_minimal_growthrate_ylr070c_3_result_2).
has_representation(trial_on_minimal_growthrate_ylr070c_3_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_ylr070c_3_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_ylr070c_3_result_2,trial_on_minimal_growthrate_ylr070c_3_result_2_proc).
procedure(trial_on_minimal_growthrate_ylr070c_3_result_2_proc).
has_representation(trial_on_minimal_growthrate_ylr070c_3_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ylr070c_3_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_ylr070c_4,trial_on_minimal_growthrate_ylr070c_4_design).
design(trial_on_minimal_growthrate_ylr070c_4_design).
has_proposition(trial_on_minimal_growthrate_ylr070c_4_design,trial_on_minimal_growthrate_ylr070c_4_factor).
factor(trial_on_minimal_growthrate_ylr070c_4_factor).
has_representation(trial_on_minimal_growthrate_ylr070c_4_factor,'presence or absence of ylr070c').
has_input(trial_on_minimal_growthrate_ylr070c_4,trial_on_minimal_growthrate_ylr070c_4_data).
data(trial_on_minimal_growthrate_ylr070c_4_data).
has_part(trial_on_minimal_growthrate_ylr070c_4_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_ylr070c_4_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_ylr070c_4_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_ylr070c_4,'jan07-trial2_expt001-plate008').
plate('jan07-trial2_expt001-plate008').
has_proposition(trial_on_minimal_growthrate_ylr070c_4,trial_on_minimal_growthrate_ylr070c_4_result).
result(trial_on_minimal_growthrate_ylr070c_4_result).
has_part(trial_on_minimal_growthrate_ylr070c_4_result,trial_on_minimal_growthrate_ylr070c_4_result_1).
has_representation(trial_on_minimal_growthrate_ylr070c_4_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_ylr070c_4_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_ylr070c_4_result_1,trial_on_minimal_growthrate_ylr070c_4_result_1_proc).
procedure(trial_on_minimal_growthrate_ylr070c_4_result_1_proc).
has_representation(trial_on_minimal_growthrate_ylr070c_4_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ylr070c_4_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_ylr070c_4_result,trial_on_minimal_growthrate_ylr070c_4_result_2).
has_representation(trial_on_minimal_growthrate_ylr070c_4_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_ylr070c_4_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_ylr070c_4_result_2,trial_on_minimal_growthrate_ylr070c_4_result_2_proc).
procedure(trial_on_minimal_growthrate_ylr070c_4_result_2_proc).
has_representation(trial_on_minimal_growthrate_ylr070c_4_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ylr070c_4_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_ylr070c_5,trial_on_minimal_growthrate_ylr070c_5_design).
design(trial_on_minimal_growthrate_ylr070c_5_design).
has_proposition(trial_on_minimal_growthrate_ylr070c_5_design,trial_on_minimal_growthrate_ylr070c_5_factor).
factor(trial_on_minimal_growthrate_ylr070c_5_factor).
has_representation(trial_on_minimal_growthrate_ylr070c_5_factor,'presence or absence of ylr070c').
has_input(trial_on_minimal_growthrate_ylr070c_5,trial_on_minimal_growthrate_ylr070c_5_data).
data(trial_on_minimal_growthrate_ylr070c_5_data).
has_part(trial_on_minimal_growthrate_ylr070c_5_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_ylr070c_5_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_ylr070c_5_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_ylr070c_5,'jan07-trial2_expt001-plate009').
plate('jan07-trial2_expt001-plate009').
has_proposition(trial_on_minimal_growthrate_ylr070c_5,trial_on_minimal_growthrate_ylr070c_5_result).
result(trial_on_minimal_growthrate_ylr070c_5_result).
has_part(trial_on_minimal_growthrate_ylr070c_5_result,trial_on_minimal_growthrate_ylr070c_5_result_1).
has_representation(trial_on_minimal_growthrate_ylr070c_5_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_ylr070c_5_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_ylr070c_5_result_1,trial_on_minimal_growthrate_ylr070c_5_result_1_proc).
procedure(trial_on_minimal_growthrate_ylr070c_5_result_1_proc).
has_representation(trial_on_minimal_growthrate_ylr070c_5_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ylr070c_5_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_ylr070c_5_result,trial_on_minimal_growthrate_ylr070c_5_result_2).
has_representation(trial_on_minimal_growthrate_ylr070c_5_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_ylr070c_5_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_ylr070c_5_result_2,trial_on_minimal_growthrate_ylr070c_5_result_2_proc).
procedure(trial_on_minimal_growthrate_ylr070c_5_result_2_proc).
has_representation(trial_on_minimal_growthrate_ylr070c_5_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ylr070c_5_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_ylr070c_6,trial_on_minimal_growthrate_ylr070c_6_design).
design(trial_on_minimal_growthrate_ylr070c_6_design).
has_proposition(trial_on_minimal_growthrate_ylr070c_6_design,trial_on_minimal_growthrate_ylr070c_6_factor).
factor(trial_on_minimal_growthrate_ylr070c_6_factor).
has_representation(trial_on_minimal_growthrate_ylr070c_6_factor,'presence or absence of ylr070c').
has_input(trial_on_minimal_growthrate_ylr070c_6,trial_on_minimal_growthrate_ylr070c_6_data).
data(trial_on_minimal_growthrate_ylr070c_6_data).
has_part(trial_on_minimal_growthrate_ylr070c_6_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_ylr070c_6_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_ylr070c_6_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_ylr070c_6,'jan07-trial2_expt001-plate010').
plate('jan07-trial2_expt001-plate010').
has_proposition(trial_on_minimal_growthrate_ylr070c_6,trial_on_minimal_growthrate_ylr070c_6_result).
result(trial_on_minimal_growthrate_ylr070c_6_result).
has_part(trial_on_minimal_growthrate_ylr070c_6_result,trial_on_minimal_growthrate_ylr070c_6_result_1).
has_representation(trial_on_minimal_growthrate_ylr070c_6_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_ylr070c_6_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_ylr070c_6_result_1,trial_on_minimal_growthrate_ylr070c_6_result_1_proc).
procedure(trial_on_minimal_growthrate_ylr070c_6_result_1_proc).
has_representation(trial_on_minimal_growthrate_ylr070c_6_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ylr070c_6_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_ylr070c_6_result,trial_on_minimal_growthrate_ylr070c_6_result_2).
has_representation(trial_on_minimal_growthrate_ylr070c_6_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_ylr070c_6_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_ylr070c_6_result_2,trial_on_minimal_growthrate_ylr070c_6_result_2_proc).
procedure(trial_on_minimal_growthrate_ylr070c_6_result_2_proc).
has_representation(trial_on_minimal_growthrate_ylr070c_6_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ylr070c_6_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_ylr070c,trial_on_minimal_growthrate_ylr070c_results).
result(trial_on_minimal_growthrate_ylr070c_results).
has_part(trial_on_minimal_growthrate_ylr070c_results,trial_on_minimal_growthrate_ylr070c_results_1).
has_representation(trial_on_minimal_growthrate_ylr070c_results_1,'median of knockout medians missing ylr070c').
text_representation('median of knockout medians missing ylr070c').
has_proposition(trial_on_minimal_growthrate_ylr070c_results_1,trial_on_minimal_growthrate_ylr070c_results_1_proc).
procedure(trial_on_minimal_growthrate_ylr070c_results_1_proc).
has_proposition(trial_on_minimal_growthrate_ylr070c_results_1_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_minimal_growthrate_ylr070c_results,trial_on_minimal_growthrate_ylr070c_results_2).
has_representation(trial_on_minimal_growthrate_ylr070c_results_2,'median of wild type medians').
text_representation('median of wild type medians').
has_proposition(trial_on_minimal_growthrate_ylr070c_results_2,trial_on_minimal_growthrate_ylr070c_results_2_proc).
procedure(trial_on_minimal_growthrate_ylr070c_results_2_proc).
has_proposition(trial_on_minimal_growthrate_ylr070c_results_2_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_minimal_growthrate_ylr070c_results,trial_on_minimal_growthrate_ylr070c_results_3).
has_representation(trial_on_minimal_growthrate_ylr070c_results_3,'difference between trial_on_minimal_growthrate_ylr070c_results_1 and trial_on_minimal_growthrate_ylr070c_results_2').
text_representation('difference between trial_on_minimal_growthrate_ylr070c_results_1 and trial_on_minimal_growthrate_ylr070c_results_2').
has_proposition(study_on_minimal_growthrate,study_on_minimal_growthrate_result).
result(study_on_minimal_growthrate_result).
has_part(study_on_minimal_growthrate_result,study_on_minimal_growthrate_result_1).
has_representation(study_on_minimal_growthrate_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_minimal_growthrate_result_1,'results/wm_km_growth_rate.csv').
link('results/wm_km_growth_rate.csv').
has_proposition(study_on_minimal_growthrate_result_1,study_on_minimal_growthrate_result_1_proc).
procedure(study_on_minimal_growthrate_result_1_proc).
has_proposition(study_on_minimal_growthrate_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_minimal_growthrate_result,study_on_minimal_growthrate_result_2).
has_representation(study_on_minimal_growthrate_result_2,'bar graph (histogram) plotting study_on_minimal_growthrate_result_1').
text_representation('bar graph (histogram) plotting study_on_minimal_growthrate_result_1').
has_proposition(study_on_minimal_growthrate_result_2,'results/km_wm_growth_rate1.tiff').
link('results/km_wm_growth_rate1.tiff').
has_proposition(study_on_minimal_growthrate_result_2,'results/km_wm_growth_rate2.tiff').
link('results/km_wm_growth_rate2.tiff').
has_proposition(study_on_minimal_growthrate_result_2,'results/overlayed_growth_rate.tiff').
link('results/overlayed_growth_rate.tiff').
has_proposition(study_on_minimal_growthrate_result_2,study_on_minimal_growthrate_result_2_proc).
procedure(study_on_minimal_growthrate_result_2_proc).
has_proposition(study_on_minimal_growthrate_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_minimal_growthrate,study_on_minimal_growthrate_conclusion).
conclusion(study_on_minimal_growthrate_conclusion).
has_representation(study_on_minimal_growthrate_conclusion,'The knockouts had on average a higher growth rate in minimal than the wild type').
text_representation('The knockouts had on average a higher growth rate in minimal than the wild type').
has_proposition(study_on_minimal_growthrate_conclusion,'obtain statistical mode of study_on_minimal_growthrate_result_1').
procedure('obtain statistical mode of study_on_minimal_growthrate_result_1').
text_representation('obtain statistical mode of study_on_minimal_growthrate_result_1').
has_part(study_on_minimal_growthrate,trial_on_minimal_growthrate_ypr121w).
trial(trial_on_minimal_growthrate_ypr121w).
has_agent(trial_on_minimal_growthrate_ypr121w,ypr121w).
strain(ypr121w).
has_proposition(trial_on_minimal_growthrate_ypr121w_1,trial_on_minimal_growthrate_ypr121w_1_design).
design(trial_on_minimal_growthrate_ypr121w_1_design).
has_proposition(trial_on_minimal_growthrate_ypr121w_1_design,trial_on_minimal_growthrate_ypr121w_1_factor).
factor(trial_on_minimal_growthrate_ypr121w_1_factor).
has_representation(trial_on_minimal_growthrate_ypr121w_1_factor,'presence or absence of ypr121w').
has_input(trial_on_minimal_growthrate_ypr121w_1,trial_on_minimal_growthrate_ypr121w_1_data).
data(trial_on_minimal_growthrate_ypr121w_1_data).
has_part(trial_on_minimal_growthrate_ypr121w_1_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_ypr121w_1_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_ypr121w_1_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_ypr121w_1,'feb07-trial1_expt001-plate005').
plate('feb07-trial1_expt001-plate005').
has_proposition(trial_on_minimal_growthrate_ypr121w_1,trial_on_minimal_growthrate_ypr121w_1_result).
result(trial_on_minimal_growthrate_ypr121w_1_result).
has_part(trial_on_minimal_growthrate_ypr121w_1_result,trial_on_minimal_growthrate_ypr121w_1_result_1).
has_representation(trial_on_minimal_growthrate_ypr121w_1_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_ypr121w_1_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_ypr121w_1_result_1,trial_on_minimal_growthrate_ypr121w_1_result_1_proc).
procedure(trial_on_minimal_growthrate_ypr121w_1_result_1_proc).
has_representation(trial_on_minimal_growthrate_ypr121w_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ypr121w_1_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_ypr121w_1_result,trial_on_minimal_growthrate_ypr121w_1_result_2).
has_representation(trial_on_minimal_growthrate_ypr121w_1_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_ypr121w_1_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_ypr121w_1_result_2,trial_on_minimal_growthrate_ypr121w_1_result_2_proc).
procedure(trial_on_minimal_growthrate_ypr121w_1_result_2_proc).
has_representation(trial_on_minimal_growthrate_ypr121w_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ypr121w_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_ypr121w,trial_on_minimal_growthrate_ypr121w_results).
result(trial_on_minimal_growthrate_ypr121w_results).
has_part(trial_on_minimal_growthrate_ypr121w_results,trial_on_minimal_growthrate_ypr121w_results_1).
has_representation(trial_on_minimal_growthrate_ypr121w_results_1,'median of knockout medians missing ypr121w').
text_representation('median of knockout medians missing ypr121w').
has_proposition(trial_on_minimal_growthrate_ypr121w_results_1,trial_on_minimal_growthrate_ypr121w_results_1_proc).
procedure(trial_on_minimal_growthrate_ypr121w_results_1_proc).
has_proposition(trial_on_minimal_growthrate_ypr121w_results_1_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_minimal_growthrate_ypr121w_results,trial_on_minimal_growthrate_ypr121w_results_2).
has_representation(trial_on_minimal_growthrate_ypr121w_results_2,'median of wild type medians').
text_representation('median of wild type medians').
has_proposition(trial_on_minimal_growthrate_ypr121w_results_2,trial_on_minimal_growthrate_ypr121w_results_2_proc).
procedure(trial_on_minimal_growthrate_ypr121w_results_2_proc).
has_proposition(trial_on_minimal_growthrate_ypr121w_results_2_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_minimal_growthrate_ypr121w_results,trial_on_minimal_growthrate_ypr121w_results_3).
has_representation(trial_on_minimal_growthrate_ypr121w_results_3,'difference between trial_on_minimal_growthrate_ypr121w_results_1 and trial_on_minimal_growthrate_ypr121w_results_2').
text_representation('difference between trial_on_minimal_growthrate_ypr121w_results_1 and trial_on_minimal_growthrate_ypr121w_results_2').
has_proposition(study_on_minimal_growthrate,study_on_minimal_growthrate_result).
result(study_on_minimal_growthrate_result).
has_part(study_on_minimal_growthrate_result,study_on_minimal_growthrate_result_1).
has_representation(study_on_minimal_growthrate_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_minimal_growthrate_result_1,'results/wm_km_growth_rate.csv').
link('results/wm_km_growth_rate.csv').
has_proposition(study_on_minimal_growthrate_result_1,study_on_minimal_growthrate_result_1_proc).
procedure(study_on_minimal_growthrate_result_1_proc).
has_proposition(study_on_minimal_growthrate_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_minimal_growthrate_result,study_on_minimal_growthrate_result_2).
has_representation(study_on_minimal_growthrate_result_2,'bar graph (histogram) plotting study_on_minimal_growthrate_result_1').
text_representation('bar graph (histogram) plotting study_on_minimal_growthrate_result_1').
has_proposition(study_on_minimal_growthrate_result_2,'results/km_wm_growth_rate1.tiff').
link('results/km_wm_growth_rate1.tiff').
has_proposition(study_on_minimal_growthrate_result_2,'results/km_wm_growth_rate2.tiff').
link('results/km_wm_growth_rate2.tiff').
has_proposition(study_on_minimal_growthrate_result_2,'results/overlayed_growth_rate.tiff').
link('results/overlayed_growth_rate.tiff').
has_proposition(study_on_minimal_growthrate_result_2,study_on_minimal_growthrate_result_2_proc).
procedure(study_on_minimal_growthrate_result_2_proc).
has_proposition(study_on_minimal_growthrate_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_minimal_growthrate,study_on_minimal_growthrate_conclusion).
conclusion(study_on_minimal_growthrate_conclusion).
has_representation(study_on_minimal_growthrate_conclusion,'The knockouts had on average a higher growth rate in minimal than the wild type').
text_representation('The knockouts had on average a higher growth rate in minimal than the wild type').
has_proposition(study_on_minimal_growthrate_conclusion,'obtain statistical mode of study_on_minimal_growthrate_result_1').
procedure('obtain statistical mode of study_on_minimal_growthrate_result_1').
text_representation('obtain statistical mode of study_on_minimal_growthrate_result_1').
has_part(study_on_minimal_growthrate,trial_on_minimal_growthrate_ynr027w).
trial(trial_on_minimal_growthrate_ynr027w).
has_agent(trial_on_minimal_growthrate_ynr027w,ynr027w).
strain(ynr027w).
has_proposition(trial_on_minimal_growthrate_ynr027w_1,trial_on_minimal_growthrate_ynr027w_1_design).
design(trial_on_minimal_growthrate_ynr027w_1_design).
has_proposition(trial_on_minimal_growthrate_ynr027w_1_design,trial_on_minimal_growthrate_ynr027w_1_factor).
factor(trial_on_minimal_growthrate_ynr027w_1_factor).
has_representation(trial_on_minimal_growthrate_ynr027w_1_factor,'presence or absence of ynr027w').
has_input(trial_on_minimal_growthrate_ynr027w_1,trial_on_minimal_growthrate_ynr027w_1_data).
data(trial_on_minimal_growthrate_ynr027w_1_data).
has_part(trial_on_minimal_growthrate_ynr027w_1_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_ynr027w_1_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_ynr027w_1_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_ynr027w_1,'jan07-trial1_expt001-plate010').
plate('jan07-trial1_expt001-plate010').
has_proposition(trial_on_minimal_growthrate_ynr027w_1,trial_on_minimal_growthrate_ynr027w_1_result).
result(trial_on_minimal_growthrate_ynr027w_1_result).
has_part(trial_on_minimal_growthrate_ynr027w_1_result,trial_on_minimal_growthrate_ynr027w_1_result_1).
has_representation(trial_on_minimal_growthrate_ynr027w_1_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_ynr027w_1_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_ynr027w_1_result_1,trial_on_minimal_growthrate_ynr027w_1_result_1_proc).
procedure(trial_on_minimal_growthrate_ynr027w_1_result_1_proc).
has_representation(trial_on_minimal_growthrate_ynr027w_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ynr027w_1_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_ynr027w_1_result,trial_on_minimal_growthrate_ynr027w_1_result_2).
has_representation(trial_on_minimal_growthrate_ynr027w_1_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_ynr027w_1_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_ynr027w_1_result_2,trial_on_minimal_growthrate_ynr027w_1_result_2_proc).
procedure(trial_on_minimal_growthrate_ynr027w_1_result_2_proc).
has_representation(trial_on_minimal_growthrate_ynr027w_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ynr027w_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_ynr027w_2,trial_on_minimal_growthrate_ynr027w_2_design).
design(trial_on_minimal_growthrate_ynr027w_2_design).
has_proposition(trial_on_minimal_growthrate_ynr027w_2_design,trial_on_minimal_growthrate_ynr027w_2_factor).
factor(trial_on_minimal_growthrate_ynr027w_2_factor).
has_representation(trial_on_minimal_growthrate_ynr027w_2_factor,'presence or absence of ynr027w').
has_input(trial_on_minimal_growthrate_ynr027w_2,trial_on_minimal_growthrate_ynr027w_2_data).
data(trial_on_minimal_growthrate_ynr027w_2_data).
has_part(trial_on_minimal_growthrate_ynr027w_2_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_ynr027w_2_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_ynr027w_2_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_ynr027w_2,'mar07-trial1_expt001-plate002').
plate('mar07-trial1_expt001-plate002').
has_proposition(trial_on_minimal_growthrate_ynr027w_2,trial_on_minimal_growthrate_ynr027w_2_result).
result(trial_on_minimal_growthrate_ynr027w_2_result).
has_part(trial_on_minimal_growthrate_ynr027w_2_result,trial_on_minimal_growthrate_ynr027w_2_result_1).
has_representation(trial_on_minimal_growthrate_ynr027w_2_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_ynr027w_2_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_ynr027w_2_result_1,trial_on_minimal_growthrate_ynr027w_2_result_1_proc).
procedure(trial_on_minimal_growthrate_ynr027w_2_result_1_proc).
has_representation(trial_on_minimal_growthrate_ynr027w_2_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ynr027w_2_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_ynr027w_2_result,trial_on_minimal_growthrate_ynr027w_2_result_2).
has_representation(trial_on_minimal_growthrate_ynr027w_2_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_ynr027w_2_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_ynr027w_2_result_2,trial_on_minimal_growthrate_ynr027w_2_result_2_proc).
procedure(trial_on_minimal_growthrate_ynr027w_2_result_2_proc).
has_representation(trial_on_minimal_growthrate_ynr027w_2_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ynr027w_2_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_ynr027w,trial_on_minimal_growthrate_ynr027w_results).
result(trial_on_minimal_growthrate_ynr027w_results).
has_part(trial_on_minimal_growthrate_ynr027w_results,trial_on_minimal_growthrate_ynr027w_results_1).
has_representation(trial_on_minimal_growthrate_ynr027w_results_1,'median of knockout medians missing ynr027w').
text_representation('median of knockout medians missing ynr027w').
has_proposition(trial_on_minimal_growthrate_ynr027w_results_1,trial_on_minimal_growthrate_ynr027w_results_1_proc).
procedure(trial_on_minimal_growthrate_ynr027w_results_1_proc).
has_proposition(trial_on_minimal_growthrate_ynr027w_results_1_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_minimal_growthrate_ynr027w_results,trial_on_minimal_growthrate_ynr027w_results_2).
has_representation(trial_on_minimal_growthrate_ynr027w_results_2,'median of wild type medians').
text_representation('median of wild type medians').
has_proposition(trial_on_minimal_growthrate_ynr027w_results_2,trial_on_minimal_growthrate_ynr027w_results_2_proc).
procedure(trial_on_minimal_growthrate_ynr027w_results_2_proc).
has_proposition(trial_on_minimal_growthrate_ynr027w_results_2_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_minimal_growthrate_ynr027w_results,trial_on_minimal_growthrate_ynr027w_results_3).
has_representation(trial_on_minimal_growthrate_ynr027w_results_3,'difference between trial_on_minimal_growthrate_ynr027w_results_1 and trial_on_minimal_growthrate_ynr027w_results_2').
text_representation('difference between trial_on_minimal_growthrate_ynr027w_results_1 and trial_on_minimal_growthrate_ynr027w_results_2').
has_proposition(study_on_minimal_growthrate,study_on_minimal_growthrate_result).
result(study_on_minimal_growthrate_result).
has_part(study_on_minimal_growthrate_result,study_on_minimal_growthrate_result_1).
has_representation(study_on_minimal_growthrate_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_minimal_growthrate_result_1,'results/wm_km_growth_rate.csv').
link('results/wm_km_growth_rate.csv').
has_proposition(study_on_minimal_growthrate_result_1,study_on_minimal_growthrate_result_1_proc).
procedure(study_on_minimal_growthrate_result_1_proc).
has_proposition(study_on_minimal_growthrate_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_minimal_growthrate_result,study_on_minimal_growthrate_result_2).
has_representation(study_on_minimal_growthrate_result_2,'bar graph (histogram) plotting study_on_minimal_growthrate_result_1').
text_representation('bar graph (histogram) plotting study_on_minimal_growthrate_result_1').
has_proposition(study_on_minimal_growthrate_result_2,'results/km_wm_growth_rate1.tiff').
link('results/km_wm_growth_rate1.tiff').
has_proposition(study_on_minimal_growthrate_result_2,'results/km_wm_growth_rate2.tiff').
link('results/km_wm_growth_rate2.tiff').
has_proposition(study_on_minimal_growthrate_result_2,'results/overlayed_growth_rate.tiff').
link('results/overlayed_growth_rate.tiff').
has_proposition(study_on_minimal_growthrate_result_2,study_on_minimal_growthrate_result_2_proc).
procedure(study_on_minimal_growthrate_result_2_proc).
has_proposition(study_on_minimal_growthrate_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_minimal_growthrate,study_on_minimal_growthrate_conclusion).
conclusion(study_on_minimal_growthrate_conclusion).
has_representation(study_on_minimal_growthrate_conclusion,'The knockouts had on average a higher growth rate in minimal than the wild type').
text_representation('The knockouts had on average a higher growth rate in minimal than the wild type').
has_proposition(study_on_minimal_growthrate_conclusion,'obtain statistical mode of study_on_minimal_growthrate_result_1').
procedure('obtain statistical mode of study_on_minimal_growthrate_result_1').
text_representation('obtain statistical mode of study_on_minimal_growthrate_result_1').
has_part(study_on_minimal_growthrate,trial_on_minimal_growthrate_ygl202w).
trial(trial_on_minimal_growthrate_ygl202w).
has_agent(trial_on_minimal_growthrate_ygl202w,ygl202w).
strain(ygl202w).
has_proposition(trial_on_minimal_growthrate_ygl202w_1,trial_on_minimal_growthrate_ygl202w_1_design).
design(trial_on_minimal_growthrate_ygl202w_1_design).
has_proposition(trial_on_minimal_growthrate_ygl202w_1_design,trial_on_minimal_growthrate_ygl202w_1_factor).
factor(trial_on_minimal_growthrate_ygl202w_1_factor).
has_representation(trial_on_minimal_growthrate_ygl202w_1_factor,'presence or absence of ygl202w').
has_input(trial_on_minimal_growthrate_ygl202w_1,trial_on_minimal_growthrate_ygl202w_1_data).
data(trial_on_minimal_growthrate_ygl202w_1_data).
has_part(trial_on_minimal_growthrate_ygl202w_1_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_ygl202w_1_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_ygl202w_1_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_ygl202w_1,'jan07-lyss1_expt001-plate001').
plate('jan07-lyss1_expt001-plate001').
has_proposition(trial_on_minimal_growthrate_ygl202w_1,trial_on_minimal_growthrate_ygl202w_1_result).
result(trial_on_minimal_growthrate_ygl202w_1_result).
has_part(trial_on_minimal_growthrate_ygl202w_1_result,trial_on_minimal_growthrate_ygl202w_1_result_1).
has_representation(trial_on_minimal_growthrate_ygl202w_1_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_ygl202w_1_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_ygl202w_1_result_1,trial_on_minimal_growthrate_ygl202w_1_result_1_proc).
procedure(trial_on_minimal_growthrate_ygl202w_1_result_1_proc).
has_representation(trial_on_minimal_growthrate_ygl202w_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ygl202w_1_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_ygl202w_1_result,trial_on_minimal_growthrate_ygl202w_1_result_2).
has_representation(trial_on_minimal_growthrate_ygl202w_1_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_ygl202w_1_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_ygl202w_1_result_2,trial_on_minimal_growthrate_ygl202w_1_result_2_proc).
procedure(trial_on_minimal_growthrate_ygl202w_1_result_2_proc).
has_representation(trial_on_minimal_growthrate_ygl202w_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ygl202w_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_ygl202w_2,trial_on_minimal_growthrate_ygl202w_2_design).
design(trial_on_minimal_growthrate_ygl202w_2_design).
has_proposition(trial_on_minimal_growthrate_ygl202w_2_design,trial_on_minimal_growthrate_ygl202w_2_factor).
factor(trial_on_minimal_growthrate_ygl202w_2_factor).
has_representation(trial_on_minimal_growthrate_ygl202w_2_factor,'presence or absence of ygl202w').
has_input(trial_on_minimal_growthrate_ygl202w_2,trial_on_minimal_growthrate_ygl202w_2_data).
data(trial_on_minimal_growthrate_ygl202w_2_data).
has_part(trial_on_minimal_growthrate_ygl202w_2_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_ygl202w_2_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_ygl202w_2_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_ygl202w_2,'jan07-lyss1_expt001-plate002').
plate('jan07-lyss1_expt001-plate002').
has_proposition(trial_on_minimal_growthrate_ygl202w_2,trial_on_minimal_growthrate_ygl202w_2_result).
result(trial_on_minimal_growthrate_ygl202w_2_result).
has_part(trial_on_minimal_growthrate_ygl202w_2_result,trial_on_minimal_growthrate_ygl202w_2_result_1).
has_representation(trial_on_minimal_growthrate_ygl202w_2_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_ygl202w_2_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_ygl202w_2_result_1,trial_on_minimal_growthrate_ygl202w_2_result_1_proc).
procedure(trial_on_minimal_growthrate_ygl202w_2_result_1_proc).
has_representation(trial_on_minimal_growthrate_ygl202w_2_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ygl202w_2_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_ygl202w_2_result,trial_on_minimal_growthrate_ygl202w_2_result_2).
has_representation(trial_on_minimal_growthrate_ygl202w_2_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_ygl202w_2_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_ygl202w_2_result_2,trial_on_minimal_growthrate_ygl202w_2_result_2_proc).
procedure(trial_on_minimal_growthrate_ygl202w_2_result_2_proc).
has_representation(trial_on_minimal_growthrate_ygl202w_2_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ygl202w_2_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_ygl202w_3,trial_on_minimal_growthrate_ygl202w_3_design).
design(trial_on_minimal_growthrate_ygl202w_3_design).
has_proposition(trial_on_minimal_growthrate_ygl202w_3_design,trial_on_minimal_growthrate_ygl202w_3_factor).
factor(trial_on_minimal_growthrate_ygl202w_3_factor).
has_representation(trial_on_minimal_growthrate_ygl202w_3_factor,'presence or absence of ygl202w').
has_input(trial_on_minimal_growthrate_ygl202w_3,trial_on_minimal_growthrate_ygl202w_3_data).
data(trial_on_minimal_growthrate_ygl202w_3_data).
has_part(trial_on_minimal_growthrate_ygl202w_3_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_ygl202w_3_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_ygl202w_3_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_ygl202w_3,'jan07-lyss1_expt001-plate003').
plate('jan07-lyss1_expt001-plate003').
has_proposition(trial_on_minimal_growthrate_ygl202w_3,trial_on_minimal_growthrate_ygl202w_3_result).
result(trial_on_minimal_growthrate_ygl202w_3_result).
has_part(trial_on_minimal_growthrate_ygl202w_3_result,trial_on_minimal_growthrate_ygl202w_3_result_1).
has_representation(trial_on_minimal_growthrate_ygl202w_3_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_ygl202w_3_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_ygl202w_3_result_1,trial_on_minimal_growthrate_ygl202w_3_result_1_proc).
procedure(trial_on_minimal_growthrate_ygl202w_3_result_1_proc).
has_representation(trial_on_minimal_growthrate_ygl202w_3_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ygl202w_3_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_ygl202w_3_result,trial_on_minimal_growthrate_ygl202w_3_result_2).
has_representation(trial_on_minimal_growthrate_ygl202w_3_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_ygl202w_3_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_ygl202w_3_result_2,trial_on_minimal_growthrate_ygl202w_3_result_2_proc).
procedure(trial_on_minimal_growthrate_ygl202w_3_result_2_proc).
has_representation(trial_on_minimal_growthrate_ygl202w_3_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ygl202w_3_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_ygl202w,trial_on_minimal_growthrate_ygl202w_results).
result(trial_on_minimal_growthrate_ygl202w_results).
has_part(trial_on_minimal_growthrate_ygl202w_results,trial_on_minimal_growthrate_ygl202w_results_1).
has_representation(trial_on_minimal_growthrate_ygl202w_results_1,'median of knockout medians missing ygl202w').
text_representation('median of knockout medians missing ygl202w').
has_proposition(trial_on_minimal_growthrate_ygl202w_results_1,trial_on_minimal_growthrate_ygl202w_results_1_proc).
procedure(trial_on_minimal_growthrate_ygl202w_results_1_proc).
has_proposition(trial_on_minimal_growthrate_ygl202w_results_1_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_minimal_growthrate_ygl202w_results,trial_on_minimal_growthrate_ygl202w_results_2).
has_representation(trial_on_minimal_growthrate_ygl202w_results_2,'median of wild type medians').
text_representation('median of wild type medians').
has_proposition(trial_on_minimal_growthrate_ygl202w_results_2,trial_on_minimal_growthrate_ygl202w_results_2_proc).
procedure(trial_on_minimal_growthrate_ygl202w_results_2_proc).
has_proposition(trial_on_minimal_growthrate_ygl202w_results_2_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_minimal_growthrate_ygl202w_results,trial_on_minimal_growthrate_ygl202w_results_3).
has_representation(trial_on_minimal_growthrate_ygl202w_results_3,'difference between trial_on_minimal_growthrate_ygl202w_results_1 and trial_on_minimal_growthrate_ygl202w_results_2').
text_representation('difference between trial_on_minimal_growthrate_ygl202w_results_1 and trial_on_minimal_growthrate_ygl202w_results_2').
has_proposition(study_on_minimal_growthrate,study_on_minimal_growthrate_result).
result(study_on_minimal_growthrate_result).
has_part(study_on_minimal_growthrate_result,study_on_minimal_growthrate_result_1).
has_representation(study_on_minimal_growthrate_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_minimal_growthrate_result_1,'results/wm_km_growth_rate.csv').
link('results/wm_km_growth_rate.csv').
has_proposition(study_on_minimal_growthrate_result_1,study_on_minimal_growthrate_result_1_proc).
procedure(study_on_minimal_growthrate_result_1_proc).
has_proposition(study_on_minimal_growthrate_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_minimal_growthrate_result,study_on_minimal_growthrate_result_2).
has_representation(study_on_minimal_growthrate_result_2,'bar graph (histogram) plotting study_on_minimal_growthrate_result_1').
text_representation('bar graph (histogram) plotting study_on_minimal_growthrate_result_1').
has_proposition(study_on_minimal_growthrate_result_2,'results/km_wm_growth_rate1.tiff').
link('results/km_wm_growth_rate1.tiff').
has_proposition(study_on_minimal_growthrate_result_2,'results/km_wm_growth_rate2.tiff').
link('results/km_wm_growth_rate2.tiff').
has_proposition(study_on_minimal_growthrate_result_2,'results/overlayed_growth_rate.tiff').
link('results/overlayed_growth_rate.tiff').
has_proposition(study_on_minimal_growthrate_result_2,study_on_minimal_growthrate_result_2_proc).
procedure(study_on_minimal_growthrate_result_2_proc).
has_proposition(study_on_minimal_growthrate_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_minimal_growthrate,study_on_minimal_growthrate_conclusion).
conclusion(study_on_minimal_growthrate_conclusion).
has_representation(study_on_minimal_growthrate_conclusion,'The knockouts had on average a higher growth rate in minimal than the wild type').
text_representation('The knockouts had on average a higher growth rate in minimal than the wild type').
has_proposition(study_on_minimal_growthrate_conclusion,'obtain statistical mode of study_on_minimal_growthrate_result_1').
procedure('obtain statistical mode of study_on_minimal_growthrate_result_1').
text_representation('obtain statistical mode of study_on_minimal_growthrate_result_1').
has_part(study_on_minimal_growthrate,trial_on_minimal_growthrate_ykl211c).
trial(trial_on_minimal_growthrate_ykl211c).
has_agent(trial_on_minimal_growthrate_ykl211c,ykl211c).
strain(ykl211c).
has_proposition(trial_on_minimal_growthrate_ykl211c_1,trial_on_minimal_growthrate_ykl211c_1_design).
design(trial_on_minimal_growthrate_ykl211c_1_design).
has_proposition(trial_on_minimal_growthrate_ykl211c_1_design,trial_on_minimal_growthrate_ykl211c_1_factor).
factor(trial_on_minimal_growthrate_ykl211c_1_factor).
has_representation(trial_on_minimal_growthrate_ykl211c_1_factor,'presence or absence of ykl211c').
has_input(trial_on_minimal_growthrate_ykl211c_1,trial_on_minimal_growthrate_ykl211c_1_data).
data(trial_on_minimal_growthrate_ykl211c_1_data).
has_part(trial_on_minimal_growthrate_ykl211c_1_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_ykl211c_1_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_ykl211c_1_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_ykl211c_1,'nature-loop3_expt001-plate002').
plate('nature-loop3_expt001-plate002').
has_proposition(trial_on_minimal_growthrate_ykl211c_1,trial_on_minimal_growthrate_ykl211c_1_result).
result(trial_on_minimal_growthrate_ykl211c_1_result).
has_part(trial_on_minimal_growthrate_ykl211c_1_result,trial_on_minimal_growthrate_ykl211c_1_result_1).
has_representation(trial_on_minimal_growthrate_ykl211c_1_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_ykl211c_1_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_ykl211c_1_result_1,trial_on_minimal_growthrate_ykl211c_1_result_1_proc).
procedure(trial_on_minimal_growthrate_ykl211c_1_result_1_proc).
has_representation(trial_on_minimal_growthrate_ykl211c_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ykl211c_1_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_ykl211c_1_result,trial_on_minimal_growthrate_ykl211c_1_result_2).
has_representation(trial_on_minimal_growthrate_ykl211c_1_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_ykl211c_1_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_ykl211c_1_result_2,trial_on_minimal_growthrate_ykl211c_1_result_2_proc).
procedure(trial_on_minimal_growthrate_ykl211c_1_result_2_proc).
has_representation(trial_on_minimal_growthrate_ykl211c_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ykl211c_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_ykl211c_2,trial_on_minimal_growthrate_ykl211c_2_design).
design(trial_on_minimal_growthrate_ykl211c_2_design).
has_proposition(trial_on_minimal_growthrate_ykl211c_2_design,trial_on_minimal_growthrate_ykl211c_2_factor).
factor(trial_on_minimal_growthrate_ykl211c_2_factor).
has_representation(trial_on_minimal_growthrate_ykl211c_2_factor,'presence or absence of ykl211c').
has_input(trial_on_minimal_growthrate_ykl211c_2,trial_on_minimal_growthrate_ykl211c_2_data).
data(trial_on_minimal_growthrate_ykl211c_2_data).
has_part(trial_on_minimal_growthrate_ykl211c_2_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_ykl211c_2_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_ykl211c_2_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_ykl211c_2,'nature-loop3_expt002-plate007').
plate('nature-loop3_expt002-plate007').
has_proposition(trial_on_minimal_growthrate_ykl211c_2,trial_on_minimal_growthrate_ykl211c_2_result).
result(trial_on_minimal_growthrate_ykl211c_2_result).
has_part(trial_on_minimal_growthrate_ykl211c_2_result,trial_on_minimal_growthrate_ykl211c_2_result_1).
has_representation(trial_on_minimal_growthrate_ykl211c_2_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_ykl211c_2_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_ykl211c_2_result_1,trial_on_minimal_growthrate_ykl211c_2_result_1_proc).
procedure(trial_on_minimal_growthrate_ykl211c_2_result_1_proc).
has_representation(trial_on_minimal_growthrate_ykl211c_2_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ykl211c_2_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_ykl211c_2_result,trial_on_minimal_growthrate_ykl211c_2_result_2).
has_representation(trial_on_minimal_growthrate_ykl211c_2_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_ykl211c_2_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_ykl211c_2_result_2,trial_on_minimal_growthrate_ykl211c_2_result_2_proc).
procedure(trial_on_minimal_growthrate_ykl211c_2_result_2_proc).
has_representation(trial_on_minimal_growthrate_ykl211c_2_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ykl211c_2_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_ykl211c_3,trial_on_minimal_growthrate_ykl211c_3_design).
design(trial_on_minimal_growthrate_ykl211c_3_design).
has_proposition(trial_on_minimal_growthrate_ykl211c_3_design,trial_on_minimal_growthrate_ykl211c_3_factor).
factor(trial_on_minimal_growthrate_ykl211c_3_factor).
has_representation(trial_on_minimal_growthrate_ykl211c_3_factor,'presence or absence of ykl211c').
has_input(trial_on_minimal_growthrate_ykl211c_3,trial_on_minimal_growthrate_ykl211c_3_data).
data(trial_on_minimal_growthrate_ykl211c_3_data).
has_part(trial_on_minimal_growthrate_ykl211c_3_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_ykl211c_3_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_ykl211c_3_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_ykl211c_3,'nature-loop3_expt003-plate002').
plate('nature-loop3_expt003-plate002').
has_proposition(trial_on_minimal_growthrate_ykl211c_3,trial_on_minimal_growthrate_ykl211c_3_result).
result(trial_on_minimal_growthrate_ykl211c_3_result).
has_part(trial_on_minimal_growthrate_ykl211c_3_result,trial_on_minimal_growthrate_ykl211c_3_result_1).
has_representation(trial_on_minimal_growthrate_ykl211c_3_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_ykl211c_3_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_ykl211c_3_result_1,trial_on_minimal_growthrate_ykl211c_3_result_1_proc).
procedure(trial_on_minimal_growthrate_ykl211c_3_result_1_proc).
has_representation(trial_on_minimal_growthrate_ykl211c_3_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ykl211c_3_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_ykl211c_3_result,trial_on_minimal_growthrate_ykl211c_3_result_2).
has_representation(trial_on_minimal_growthrate_ykl211c_3_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_ykl211c_3_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_ykl211c_3_result_2,trial_on_minimal_growthrate_ykl211c_3_result_2_proc).
procedure(trial_on_minimal_growthrate_ykl211c_3_result_2_proc).
has_representation(trial_on_minimal_growthrate_ykl211c_3_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ykl211c_3_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_ykl211c_4,trial_on_minimal_growthrate_ykl211c_4_design).
design(trial_on_minimal_growthrate_ykl211c_4_design).
has_proposition(trial_on_minimal_growthrate_ykl211c_4_design,trial_on_minimal_growthrate_ykl211c_4_factor).
factor(trial_on_minimal_growthrate_ykl211c_4_factor).
has_representation(trial_on_minimal_growthrate_ykl211c_4_factor,'presence or absence of ykl211c').
has_input(trial_on_minimal_growthrate_ykl211c_4,trial_on_minimal_growthrate_ykl211c_4_data).
data(trial_on_minimal_growthrate_ykl211c_4_data).
has_part(trial_on_minimal_growthrate_ykl211c_4_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_ykl211c_4_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_ykl211c_4_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_ykl211c_4,'nature-loop3_expt004-plate007').
plate('nature-loop3_expt004-plate007').
has_proposition(trial_on_minimal_growthrate_ykl211c_4,trial_on_minimal_growthrate_ykl211c_4_result).
result(trial_on_minimal_growthrate_ykl211c_4_result).
has_part(trial_on_minimal_growthrate_ykl211c_4_result,trial_on_minimal_growthrate_ykl211c_4_result_1).
has_representation(trial_on_minimal_growthrate_ykl211c_4_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_ykl211c_4_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_ykl211c_4_result_1,trial_on_minimal_growthrate_ykl211c_4_result_1_proc).
procedure(trial_on_minimal_growthrate_ykl211c_4_result_1_proc).
has_representation(trial_on_minimal_growthrate_ykl211c_4_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ykl211c_4_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_ykl211c_4_result,trial_on_minimal_growthrate_ykl211c_4_result_2).
has_representation(trial_on_minimal_growthrate_ykl211c_4_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_ykl211c_4_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_ykl211c_4_result_2,trial_on_minimal_growthrate_ykl211c_4_result_2_proc).
procedure(trial_on_minimal_growthrate_ykl211c_4_result_2_proc).
has_representation(trial_on_minimal_growthrate_ykl211c_4_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ykl211c_4_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_ykl211c_5,trial_on_minimal_growthrate_ykl211c_5_design).
design(trial_on_minimal_growthrate_ykl211c_5_design).
has_proposition(trial_on_minimal_growthrate_ykl211c_5_design,trial_on_minimal_growthrate_ykl211c_5_factor).
factor(trial_on_minimal_growthrate_ykl211c_5_factor).
has_representation(trial_on_minimal_growthrate_ykl211c_5_factor,'presence or absence of ykl211c').
has_input(trial_on_minimal_growthrate_ykl211c_5,trial_on_minimal_growthrate_ykl211c_5_data).
data(trial_on_minimal_growthrate_ykl211c_5_data).
has_part(trial_on_minimal_growthrate_ykl211c_5_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_ykl211c_5_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_ykl211c_5_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_ykl211c_5,'nature-loop3_expt005-plate007').
plate('nature-loop3_expt005-plate007').
has_proposition(trial_on_minimal_growthrate_ykl211c_5,trial_on_minimal_growthrate_ykl211c_5_result).
result(trial_on_minimal_growthrate_ykl211c_5_result).
has_part(trial_on_minimal_growthrate_ykl211c_5_result,trial_on_minimal_growthrate_ykl211c_5_result_1).
has_representation(trial_on_minimal_growthrate_ykl211c_5_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_ykl211c_5_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_ykl211c_5_result_1,trial_on_minimal_growthrate_ykl211c_5_result_1_proc).
procedure(trial_on_minimal_growthrate_ykl211c_5_result_1_proc).
has_representation(trial_on_minimal_growthrate_ykl211c_5_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ykl211c_5_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_ykl211c_5_result,trial_on_minimal_growthrate_ykl211c_5_result_2).
has_representation(trial_on_minimal_growthrate_ykl211c_5_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_ykl211c_5_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_ykl211c_5_result_2,trial_on_minimal_growthrate_ykl211c_5_result_2_proc).
procedure(trial_on_minimal_growthrate_ykl211c_5_result_2_proc).
has_representation(trial_on_minimal_growthrate_ykl211c_5_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ykl211c_5_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_ykl211c_6,trial_on_minimal_growthrate_ykl211c_6_design).
design(trial_on_minimal_growthrate_ykl211c_6_design).
has_proposition(trial_on_minimal_growthrate_ykl211c_6_design,trial_on_minimal_growthrate_ykl211c_6_factor).
factor(trial_on_minimal_growthrate_ykl211c_6_factor).
has_representation(trial_on_minimal_growthrate_ykl211c_6_factor,'presence or absence of ykl211c').
has_input(trial_on_minimal_growthrate_ykl211c_6,trial_on_minimal_growthrate_ykl211c_6_data).
data(trial_on_minimal_growthrate_ykl211c_6_data).
has_part(trial_on_minimal_growthrate_ykl211c_6_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_ykl211c_6_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_ykl211c_6_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_ykl211c_6,'nature-loop1_expt001-plate002').
plate('nature-loop1_expt001-plate002').
has_proposition(trial_on_minimal_growthrate_ykl211c_6,trial_on_minimal_growthrate_ykl211c_6_result).
result(trial_on_minimal_growthrate_ykl211c_6_result).
has_part(trial_on_minimal_growthrate_ykl211c_6_result,trial_on_minimal_growthrate_ykl211c_6_result_1).
has_representation(trial_on_minimal_growthrate_ykl211c_6_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_ykl211c_6_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_ykl211c_6_result_1,trial_on_minimal_growthrate_ykl211c_6_result_1_proc).
procedure(trial_on_minimal_growthrate_ykl211c_6_result_1_proc).
has_representation(trial_on_minimal_growthrate_ykl211c_6_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ykl211c_6_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_ykl211c_6_result,trial_on_minimal_growthrate_ykl211c_6_result_2).
has_representation(trial_on_minimal_growthrate_ykl211c_6_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_ykl211c_6_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_ykl211c_6_result_2,trial_on_minimal_growthrate_ykl211c_6_result_2_proc).
procedure(trial_on_minimal_growthrate_ykl211c_6_result_2_proc).
has_representation(trial_on_minimal_growthrate_ykl211c_6_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ykl211c_6_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_ykl211c_7,trial_on_minimal_growthrate_ykl211c_7_design).
design(trial_on_minimal_growthrate_ykl211c_7_design).
has_proposition(trial_on_minimal_growthrate_ykl211c_7_design,trial_on_minimal_growthrate_ykl211c_7_factor).
factor(trial_on_minimal_growthrate_ykl211c_7_factor).
has_representation(trial_on_minimal_growthrate_ykl211c_7_factor,'presence or absence of ykl211c').
has_input(trial_on_minimal_growthrate_ykl211c_7,trial_on_minimal_growthrate_ykl211c_7_data).
data(trial_on_minimal_growthrate_ykl211c_7_data).
has_part(trial_on_minimal_growthrate_ykl211c_7_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_ykl211c_7_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_ykl211c_7_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_ykl211c_7,'nature-loop2_expt001-plate006').
plate('nature-loop2_expt001-plate006').
has_proposition(trial_on_minimal_growthrate_ykl211c_7,trial_on_minimal_growthrate_ykl211c_7_result).
result(trial_on_minimal_growthrate_ykl211c_7_result).
has_part(trial_on_minimal_growthrate_ykl211c_7_result,trial_on_minimal_growthrate_ykl211c_7_result_1).
has_representation(trial_on_minimal_growthrate_ykl211c_7_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_ykl211c_7_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_ykl211c_7_result_1,trial_on_minimal_growthrate_ykl211c_7_result_1_proc).
procedure(trial_on_minimal_growthrate_ykl211c_7_result_1_proc).
has_representation(trial_on_minimal_growthrate_ykl211c_7_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ykl211c_7_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_ykl211c_7_result,trial_on_minimal_growthrate_ykl211c_7_result_2).
has_representation(trial_on_minimal_growthrate_ykl211c_7_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_ykl211c_7_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_ykl211c_7_result_2,trial_on_minimal_growthrate_ykl211c_7_result_2_proc).
procedure(trial_on_minimal_growthrate_ykl211c_7_result_2_proc).
has_representation(trial_on_minimal_growthrate_ykl211c_7_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ykl211c_7_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_ykl211c_8,trial_on_minimal_growthrate_ykl211c_8_design).
design(trial_on_minimal_growthrate_ykl211c_8_design).
has_proposition(trial_on_minimal_growthrate_ykl211c_8_design,trial_on_minimal_growthrate_ykl211c_8_factor).
factor(trial_on_minimal_growthrate_ykl211c_8_factor).
has_representation(trial_on_minimal_growthrate_ykl211c_8_factor,'presence or absence of ykl211c').
has_input(trial_on_minimal_growthrate_ykl211c_8,trial_on_minimal_growthrate_ykl211c_8_data).
data(trial_on_minimal_growthrate_ykl211c_8_data).
has_part(trial_on_minimal_growthrate_ykl211c_8_data,'48 values for growth rate of knockout on minimal medium').
has_part(trial_on_minimal_growthrate_ykl211c_8_data,'48 values for growth rate of wild type on minimal medium').
has_proposition(trial_on_minimal_growthrate_ykl211c_8_data,'../data/').
link('../data/').
located_in(trial_on_minimal_growthrate_ykl211c_8,'nature-loop3_expt006-plate006').
plate('nature-loop3_expt006-plate006').
has_proposition(trial_on_minimal_growthrate_ykl211c_8,trial_on_minimal_growthrate_ykl211c_8_result).
result(trial_on_minimal_growthrate_ykl211c_8_result).
has_part(trial_on_minimal_growthrate_ykl211c_8_result,trial_on_minimal_growthrate_ykl211c_8_result_1).
has_representation(trial_on_minimal_growthrate_ykl211c_8_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_growthrate_ykl211c_8_result_1,'results/linear_slope_growth_kmedians.txt').
link('results/linear_slope_growth_kmedians.txt').
has_proposition(trial_on_minimal_growthrate_ykl211c_8_result_1,trial_on_minimal_growthrate_ykl211c_8_result_1_proc).
procedure(trial_on_minimal_growthrate_ykl211c_8_result_1_proc).
has_representation(trial_on_minimal_growthrate_ykl211c_8_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ykl211c_8_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_on_minimal_growthrate_ykl211c_8_result,trial_on_minimal_growthrate_ykl211c_8_result_2).
has_representation(trial_on_minimal_growthrate_ykl211c_8_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_growthrate_ykl211c_8_result_2,'results/linear_slope_growth_wmmedians.txt').
link('results/linear_slope_growth_wmmedians.txt').
has_proposition(trial_on_minimal_growthrate_ykl211c_8_result_2,trial_on_minimal_growthrate_ykl211c_8_result_2_proc).
procedure(trial_on_minimal_growthrate_ykl211c_8_result_2_proc).
has_representation(trial_on_minimal_growthrate_ykl211c_8_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_growthrate_ykl211c_8_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_growthrate_ykl211c,trial_on_minimal_growthrate_ykl211c_results).
result(trial_on_minimal_growthrate_ykl211c_results).
has_part(trial_on_minimal_growthrate_ykl211c_results,trial_on_minimal_growthrate_ykl211c_results_1).
has_representation(trial_on_minimal_growthrate_ykl211c_results_1,'median of knockout medians missing ykl211c').
text_representation('median of knockout medians missing ykl211c').
has_proposition(trial_on_minimal_growthrate_ykl211c_results_1,trial_on_minimal_growthrate_ykl211c_results_1_proc).
procedure(trial_on_minimal_growthrate_ykl211c_results_1_proc).
has_proposition(trial_on_minimal_growthrate_ykl211c_results_1_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_minimal_growthrate_ykl211c_results,trial_on_minimal_growthrate_ykl211c_results_2).
has_representation(trial_on_minimal_growthrate_ykl211c_results_2,'median of wild type medians').
text_representation('median of wild type medians').
has_proposition(trial_on_minimal_growthrate_ykl211c_results_2,trial_on_minimal_growthrate_ykl211c_results_2_proc).
procedure(trial_on_minimal_growthrate_ykl211c_results_2_proc).
has_proposition(trial_on_minimal_growthrate_ykl211c_results_2_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_minimal_growthrate_ykl211c_results,trial_on_minimal_growthrate_ykl211c_results_3).
has_representation(trial_on_minimal_growthrate_ykl211c_results_3,'difference between trial_on_minimal_growthrate_ykl211c_results_1 and trial_on_minimal_growthrate_ykl211c_results_2').
text_representation('difference between trial_on_minimal_growthrate_ykl211c_results_1 and trial_on_minimal_growthrate_ykl211c_results_2').
has_proposition(study_on_minimal_growthrate,study_on_minimal_growthrate_result).
result(study_on_minimal_growthrate_result).
has_part(study_on_minimal_growthrate_result,study_on_minimal_growthrate_result_1).
has_representation(study_on_minimal_growthrate_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_minimal_growthrate_result_1,'results/wm_km_growth_rate.csv').
link('results/wm_km_growth_rate.csv').
has_proposition(study_on_minimal_growthrate_result_1,study_on_minimal_growthrate_result_1_proc).
procedure(study_on_minimal_growthrate_result_1_proc).
has_proposition(study_on_minimal_growthrate_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_minimal_growthrate_result,study_on_minimal_growthrate_result_2).
has_representation(study_on_minimal_growthrate_result_2,'bar graph (histogram) plotting study_on_minimal_growthrate_result_1').
text_representation('bar graph (histogram) plotting study_on_minimal_growthrate_result_1').
has_proposition(study_on_minimal_growthrate_result_2,'results/km_wm_growth_rate1.tiff').
link('results/km_wm_growth_rate1.tiff').
has_proposition(study_on_minimal_growthrate_result_2,'results/km_wm_growth_rate2.tiff').
link('results/km_wm_growth_rate2.tiff').
has_proposition(study_on_minimal_growthrate_result_2,'results/overlayed_growth_rate.tiff').
link('results/overlayed_growth_rate.tiff').
has_proposition(study_on_minimal_growthrate_result_2,study_on_minimal_growthrate_result_2_proc).
procedure(study_on_minimal_growthrate_result_2_proc).
has_proposition(study_on_minimal_growthrate_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_minimal_growthrate,study_on_minimal_growthrate_conclusion).
conclusion(study_on_minimal_growthrate_conclusion).
has_representation(study_on_minimal_growthrate_conclusion,'The knockouts had on average a higher growth rate in minimal than the wild type').
text_representation('The knockouts had on average a higher growth rate in minimal than the wild type').
has_proposition(study_on_minimal_growthrate_conclusion,'obtain statistical mode of study_on_minimal_growthrate_result_1').
procedure('obtain statistical mode of study_on_minimal_growthrate_result_1').
text_representation('obtain statistical mode of study_on_minimal_growthrate_result_1').
has_part(study_on_minimal_globalmaxod,trial_on_minimal_globalmaxod_yhr163w).
trial(trial_on_minimal_globalmaxod_yhr163w).
has_agent(trial_on_minimal_globalmaxod_yhr163w,yhr163w).
strain(yhr163w).
has_proposition(trial_on_minimal_globalmaxod_yhr163w_1,trial_on_minimal_globalmaxod_yhr163w_1_design).
design(trial_on_minimal_globalmaxod_yhr163w_1_design).
has_proposition(trial_on_minimal_globalmaxod_yhr163w_1_design,trial_on_minimal_globalmaxod_yhr163w_1_factor).
factor(trial_on_minimal_globalmaxod_yhr163w_1_factor).
has_representation(trial_on_minimal_globalmaxod_yhr163w_1_factor,'presence or absence of yhr163w').
has_input(trial_on_minimal_globalmaxod_yhr163w_1,trial_on_minimal_globalmaxod_yhr163w_1_data).
data(trial_on_minimal_globalmaxod_yhr163w_1_data).
has_part(trial_on_minimal_globalmaxod_yhr163w_1_data,'48 values for global max od of knockout on minimal medium').
has_part(trial_on_minimal_globalmaxod_yhr163w_1_data,'48 values for global max od of wild type on minimal medium').
has_proposition(trial_on_minimal_globalmaxod_yhr163w_1_data,'../data/').
link('../data/').
located_in(trial_on_minimal_globalmaxod_yhr163w_1,'jan07-trial1_expt001-plate009').
plate('jan07-trial1_expt001-plate009').
has_proposition(trial_on_minimal_globalmaxod_yhr163w_1,trial_on_minimal_globalmaxod_yhr163w_1_result).
result(trial_on_minimal_globalmaxod_yhr163w_1_result).
has_part(trial_on_minimal_globalmaxod_yhr163w_1_result,trial_on_minimal_globalmaxod_yhr163w_1_result_1).
has_representation(trial_on_minimal_globalmaxod_yhr163w_1_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_globalmaxod_yhr163w_1_result_1,'results/global_max_od_growth_kmedians.txt').
link('results/global_max_od_growth_kmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_yhr163w_1_result_1,trial_on_minimal_globalmaxod_yhr163w_1_result_1_proc).
procedure(trial_on_minimal_globalmaxod_yhr163w_1_result_1_proc).
has_representation(trial_on_minimal_globalmaxod_yhr163w_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_yhr163w_1_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_minimal_globalmaxod_yhr163w_1_result,trial_on_minimal_globalmaxod_yhr163w_1_result_2).
has_representation(trial_on_minimal_globalmaxod_yhr163w_1_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_globalmaxod_yhr163w_1_result_2,'results/global_max_od_growth_wmmedians.txt').
link('results/global_max_od_growth_wmmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_yhr163w_1_result_2,trial_on_minimal_globalmaxod_yhr163w_1_result_2_proc).
procedure(trial_on_minimal_globalmaxod_yhr163w_1_result_2_proc).
has_representation(trial_on_minimal_globalmaxod_yhr163w_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_yhr163w_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_globalmaxod_yhr163w_2,trial_on_minimal_globalmaxod_yhr163w_2_design).
design(trial_on_minimal_globalmaxod_yhr163w_2_design).
has_proposition(trial_on_minimal_globalmaxod_yhr163w_2_design,trial_on_minimal_globalmaxod_yhr163w_2_factor).
factor(trial_on_minimal_globalmaxod_yhr163w_2_factor).
has_representation(trial_on_minimal_globalmaxod_yhr163w_2_factor,'presence or absence of yhr163w').
has_input(trial_on_minimal_globalmaxod_yhr163w_2,trial_on_minimal_globalmaxod_yhr163w_2_data).
data(trial_on_minimal_globalmaxod_yhr163w_2_data).
has_part(trial_on_minimal_globalmaxod_yhr163w_2_data,'48 values for global max od of knockout on minimal medium').
has_part(trial_on_minimal_globalmaxod_yhr163w_2_data,'48 values for global max od of wild type on minimal medium').
has_proposition(trial_on_minimal_globalmaxod_yhr163w_2_data,'../data/').
link('../data/').
located_in(trial_on_minimal_globalmaxod_yhr163w_2,'jan07-trial2_expt001-plate001').
plate('jan07-trial2_expt001-plate001').
has_proposition(trial_on_minimal_globalmaxod_yhr163w_2,trial_on_minimal_globalmaxod_yhr163w_2_result).
result(trial_on_minimal_globalmaxod_yhr163w_2_result).
has_part(trial_on_minimal_globalmaxod_yhr163w_2_result,trial_on_minimal_globalmaxod_yhr163w_2_result_1).
has_representation(trial_on_minimal_globalmaxod_yhr163w_2_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_globalmaxod_yhr163w_2_result_1,'results/global_max_od_growth_kmedians.txt').
link('results/global_max_od_growth_kmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_yhr163w_2_result_1,trial_on_minimal_globalmaxod_yhr163w_2_result_1_proc).
procedure(trial_on_minimal_globalmaxod_yhr163w_2_result_1_proc).
has_representation(trial_on_minimal_globalmaxod_yhr163w_2_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_yhr163w_2_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_minimal_globalmaxod_yhr163w_2_result,trial_on_minimal_globalmaxod_yhr163w_2_result_2).
has_representation(trial_on_minimal_globalmaxod_yhr163w_2_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_globalmaxod_yhr163w_2_result_2,'results/global_max_od_growth_wmmedians.txt').
link('results/global_max_od_growth_wmmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_yhr163w_2_result_2,trial_on_minimal_globalmaxod_yhr163w_2_result_2_proc).
procedure(trial_on_minimal_globalmaxod_yhr163w_2_result_2_proc).
has_representation(trial_on_minimal_globalmaxod_yhr163w_2_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_yhr163w_2_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_globalmaxod_yhr163w_3,trial_on_minimal_globalmaxod_yhr163w_3_design).
design(trial_on_minimal_globalmaxod_yhr163w_3_design).
has_proposition(trial_on_minimal_globalmaxod_yhr163w_3_design,trial_on_minimal_globalmaxod_yhr163w_3_factor).
factor(trial_on_minimal_globalmaxod_yhr163w_3_factor).
has_representation(trial_on_minimal_globalmaxod_yhr163w_3_factor,'presence or absence of yhr163w').
has_input(trial_on_minimal_globalmaxod_yhr163w_3,trial_on_minimal_globalmaxod_yhr163w_3_data).
data(trial_on_minimal_globalmaxod_yhr163w_3_data).
has_part(trial_on_minimal_globalmaxod_yhr163w_3_data,'48 values for global max od of knockout on minimal medium').
has_part(trial_on_minimal_globalmaxod_yhr163w_3_data,'48 values for global max od of wild type on minimal medium').
has_proposition(trial_on_minimal_globalmaxod_yhr163w_3_data,'../data/').
link('../data/').
located_in(trial_on_minimal_globalmaxod_yhr163w_3,'mar07-trial2_expt001-plate001').
plate('mar07-trial2_expt001-plate001').
has_proposition(trial_on_minimal_globalmaxod_yhr163w_3,trial_on_minimal_globalmaxod_yhr163w_3_result).
result(trial_on_minimal_globalmaxod_yhr163w_3_result).
has_part(trial_on_minimal_globalmaxod_yhr163w_3_result,trial_on_minimal_globalmaxod_yhr163w_3_result_1).
has_representation(trial_on_minimal_globalmaxod_yhr163w_3_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_globalmaxod_yhr163w_3_result_1,'results/global_max_od_growth_kmedians.txt').
link('results/global_max_od_growth_kmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_yhr163w_3_result_1,trial_on_minimal_globalmaxod_yhr163w_3_result_1_proc).
procedure(trial_on_minimal_globalmaxod_yhr163w_3_result_1_proc).
has_representation(trial_on_minimal_globalmaxod_yhr163w_3_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_yhr163w_3_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_minimal_globalmaxod_yhr163w_3_result,trial_on_minimal_globalmaxod_yhr163w_3_result_2).
has_representation(trial_on_minimal_globalmaxod_yhr163w_3_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_globalmaxod_yhr163w_3_result_2,'results/global_max_od_growth_wmmedians.txt').
link('results/global_max_od_growth_wmmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_yhr163w_3_result_2,trial_on_minimal_globalmaxod_yhr163w_3_result_2_proc).
procedure(trial_on_minimal_globalmaxod_yhr163w_3_result_2_proc).
has_representation(trial_on_minimal_globalmaxod_yhr163w_3_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_yhr163w_3_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_globalmaxod_yhr163w_4,trial_on_minimal_globalmaxod_yhr163w_4_design).
design(trial_on_minimal_globalmaxod_yhr163w_4_design).
has_proposition(trial_on_minimal_globalmaxod_yhr163w_4_design,trial_on_minimal_globalmaxod_yhr163w_4_factor).
factor(trial_on_minimal_globalmaxod_yhr163w_4_factor).
has_representation(trial_on_minimal_globalmaxod_yhr163w_4_factor,'presence or absence of yhr163w').
has_input(trial_on_minimal_globalmaxod_yhr163w_4,trial_on_minimal_globalmaxod_yhr163w_4_data).
data(trial_on_minimal_globalmaxod_yhr163w_4_data).
has_part(trial_on_minimal_globalmaxod_yhr163w_4_data,'48 values for global max od of knockout on minimal medium').
has_part(trial_on_minimal_globalmaxod_yhr163w_4_data,'48 values for global max od of wild type on minimal medium').
has_proposition(trial_on_minimal_globalmaxod_yhr163w_4_data,'../data/').
link('../data/').
located_in(trial_on_minimal_globalmaxod_yhr163w_4,'mar07-trial2_expt001-plate002').
plate('mar07-trial2_expt001-plate002').
has_proposition(trial_on_minimal_globalmaxod_yhr163w_4,trial_on_minimal_globalmaxod_yhr163w_4_result).
result(trial_on_minimal_globalmaxod_yhr163w_4_result).
has_part(trial_on_minimal_globalmaxod_yhr163w_4_result,trial_on_minimal_globalmaxod_yhr163w_4_result_1).
has_representation(trial_on_minimal_globalmaxod_yhr163w_4_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_globalmaxod_yhr163w_4_result_1,'results/global_max_od_growth_kmedians.txt').
link('results/global_max_od_growth_kmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_yhr163w_4_result_1,trial_on_minimal_globalmaxod_yhr163w_4_result_1_proc).
procedure(trial_on_minimal_globalmaxod_yhr163w_4_result_1_proc).
has_representation(trial_on_minimal_globalmaxod_yhr163w_4_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_yhr163w_4_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_minimal_globalmaxod_yhr163w_4_result,trial_on_minimal_globalmaxod_yhr163w_4_result_2).
has_representation(trial_on_minimal_globalmaxod_yhr163w_4_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_globalmaxod_yhr163w_4_result_2,'results/global_max_od_growth_wmmedians.txt').
link('results/global_max_od_growth_wmmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_yhr163w_4_result_2,trial_on_minimal_globalmaxod_yhr163w_4_result_2_proc).
procedure(trial_on_minimal_globalmaxod_yhr163w_4_result_2_proc).
has_representation(trial_on_minimal_globalmaxod_yhr163w_4_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_yhr163w_4_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_globalmaxod_yhr163w_5,trial_on_minimal_globalmaxod_yhr163w_5_design).
design(trial_on_minimal_globalmaxod_yhr163w_5_design).
has_proposition(trial_on_minimal_globalmaxod_yhr163w_5_design,trial_on_minimal_globalmaxod_yhr163w_5_factor).
factor(trial_on_minimal_globalmaxod_yhr163w_5_factor).
has_representation(trial_on_minimal_globalmaxod_yhr163w_5_factor,'presence or absence of yhr163w').
has_input(trial_on_minimal_globalmaxod_yhr163w_5,trial_on_minimal_globalmaxod_yhr163w_5_data).
data(trial_on_minimal_globalmaxod_yhr163w_5_data).
has_part(trial_on_minimal_globalmaxod_yhr163w_5_data,'48 values for global max od of knockout on minimal medium').
has_part(trial_on_minimal_globalmaxod_yhr163w_5_data,'48 values for global max od of wild type on minimal medium').
has_proposition(trial_on_minimal_globalmaxod_yhr163w_5_data,'../data/').
link('../data/').
located_in(trial_on_minimal_globalmaxod_yhr163w_5,'mar07-trial2_expt001-plate003').
plate('mar07-trial2_expt001-plate003').
has_proposition(trial_on_minimal_globalmaxod_yhr163w_5,trial_on_minimal_globalmaxod_yhr163w_5_result).
result(trial_on_minimal_globalmaxod_yhr163w_5_result).
has_part(trial_on_minimal_globalmaxod_yhr163w_5_result,trial_on_minimal_globalmaxod_yhr163w_5_result_1).
has_representation(trial_on_minimal_globalmaxod_yhr163w_5_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_globalmaxod_yhr163w_5_result_1,'results/global_max_od_growth_kmedians.txt').
link('results/global_max_od_growth_kmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_yhr163w_5_result_1,trial_on_minimal_globalmaxod_yhr163w_5_result_1_proc).
procedure(trial_on_minimal_globalmaxod_yhr163w_5_result_1_proc).
has_representation(trial_on_minimal_globalmaxod_yhr163w_5_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_yhr163w_5_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_minimal_globalmaxod_yhr163w_5_result,trial_on_minimal_globalmaxod_yhr163w_5_result_2).
has_representation(trial_on_minimal_globalmaxod_yhr163w_5_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_globalmaxod_yhr163w_5_result_2,'results/global_max_od_growth_wmmedians.txt').
link('results/global_max_od_growth_wmmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_yhr163w_5_result_2,trial_on_minimal_globalmaxod_yhr163w_5_result_2_proc).
procedure(trial_on_minimal_globalmaxod_yhr163w_5_result_2_proc).
has_representation(trial_on_minimal_globalmaxod_yhr163w_5_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_yhr163w_5_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_globalmaxod_yhr163w_6,trial_on_minimal_globalmaxod_yhr163w_6_design).
design(trial_on_minimal_globalmaxod_yhr163w_6_design).
has_proposition(trial_on_minimal_globalmaxod_yhr163w_6_design,trial_on_minimal_globalmaxod_yhr163w_6_factor).
factor(trial_on_minimal_globalmaxod_yhr163w_6_factor).
has_representation(trial_on_minimal_globalmaxod_yhr163w_6_factor,'presence or absence of yhr163w').
has_input(trial_on_minimal_globalmaxod_yhr163w_6,trial_on_minimal_globalmaxod_yhr163w_6_data).
data(trial_on_minimal_globalmaxod_yhr163w_6_data).
has_part(trial_on_minimal_globalmaxod_yhr163w_6_data,'48 values for global max od of knockout on minimal medium').
has_part(trial_on_minimal_globalmaxod_yhr163w_6_data,'48 values for global max od of wild type on minimal medium').
has_proposition(trial_on_minimal_globalmaxod_yhr163w_6_data,'../data/').
link('../data/').
located_in(trial_on_minimal_globalmaxod_yhr163w_6,'mar07-trial2_expt001-plate004').
plate('mar07-trial2_expt001-plate004').
has_proposition(trial_on_minimal_globalmaxod_yhr163w_6,trial_on_minimal_globalmaxod_yhr163w_6_result).
result(trial_on_minimal_globalmaxod_yhr163w_6_result).
has_part(trial_on_minimal_globalmaxod_yhr163w_6_result,trial_on_minimal_globalmaxod_yhr163w_6_result_1).
has_representation(trial_on_minimal_globalmaxod_yhr163w_6_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_globalmaxod_yhr163w_6_result_1,'results/global_max_od_growth_kmedians.txt').
link('results/global_max_od_growth_kmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_yhr163w_6_result_1,trial_on_minimal_globalmaxod_yhr163w_6_result_1_proc).
procedure(trial_on_minimal_globalmaxod_yhr163w_6_result_1_proc).
has_representation(trial_on_minimal_globalmaxod_yhr163w_6_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_yhr163w_6_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_minimal_globalmaxod_yhr163w_6_result,trial_on_minimal_globalmaxod_yhr163w_6_result_2).
has_representation(trial_on_minimal_globalmaxod_yhr163w_6_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_globalmaxod_yhr163w_6_result_2,'results/global_max_od_growth_wmmedians.txt').
link('results/global_max_od_growth_wmmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_yhr163w_6_result_2,trial_on_minimal_globalmaxod_yhr163w_6_result_2_proc).
procedure(trial_on_minimal_globalmaxod_yhr163w_6_result_2_proc).
has_representation(trial_on_minimal_globalmaxod_yhr163w_6_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_yhr163w_6_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_globalmaxod_yhr163w_7,trial_on_minimal_globalmaxod_yhr163w_7_design).
design(trial_on_minimal_globalmaxod_yhr163w_7_design).
has_proposition(trial_on_minimal_globalmaxod_yhr163w_7_design,trial_on_minimal_globalmaxod_yhr163w_7_factor).
factor(trial_on_minimal_globalmaxod_yhr163w_7_factor).
has_representation(trial_on_minimal_globalmaxod_yhr163w_7_factor,'presence or absence of yhr163w').
has_input(trial_on_minimal_globalmaxod_yhr163w_7,trial_on_minimal_globalmaxod_yhr163w_7_data).
data(trial_on_minimal_globalmaxod_yhr163w_7_data).
has_part(trial_on_minimal_globalmaxod_yhr163w_7_data,'48 values for global max od of knockout on minimal medium').
has_part(trial_on_minimal_globalmaxod_yhr163w_7_data,'48 values for global max od of wild type on minimal medium').
has_proposition(trial_on_minimal_globalmaxod_yhr163w_7_data,'../data/').
link('../data/').
located_in(trial_on_minimal_globalmaxod_yhr163w_7,'mar07-trial2_expt001-plate005').
plate('mar07-trial2_expt001-plate005').
has_proposition(trial_on_minimal_globalmaxod_yhr163w_7,trial_on_minimal_globalmaxod_yhr163w_7_result).
result(trial_on_minimal_globalmaxod_yhr163w_7_result).
has_part(trial_on_minimal_globalmaxod_yhr163w_7_result,trial_on_minimal_globalmaxod_yhr163w_7_result_1).
has_representation(trial_on_minimal_globalmaxod_yhr163w_7_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_globalmaxod_yhr163w_7_result_1,'results/global_max_od_growth_kmedians.txt').
link('results/global_max_od_growth_kmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_yhr163w_7_result_1,trial_on_minimal_globalmaxod_yhr163w_7_result_1_proc).
procedure(trial_on_minimal_globalmaxod_yhr163w_7_result_1_proc).
has_representation(trial_on_minimal_globalmaxod_yhr163w_7_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_yhr163w_7_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_minimal_globalmaxod_yhr163w_7_result,trial_on_minimal_globalmaxod_yhr163w_7_result_2).
has_representation(trial_on_minimal_globalmaxod_yhr163w_7_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_globalmaxod_yhr163w_7_result_2,'results/global_max_od_growth_wmmedians.txt').
link('results/global_max_od_growth_wmmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_yhr163w_7_result_2,trial_on_minimal_globalmaxod_yhr163w_7_result_2_proc).
procedure(trial_on_minimal_globalmaxod_yhr163w_7_result_2_proc).
has_representation(trial_on_minimal_globalmaxod_yhr163w_7_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_yhr163w_7_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_globalmaxod_yhr163w_8,trial_on_minimal_globalmaxod_yhr163w_8_design).
design(trial_on_minimal_globalmaxod_yhr163w_8_design).
has_proposition(trial_on_minimal_globalmaxod_yhr163w_8_design,trial_on_minimal_globalmaxod_yhr163w_8_factor).
factor(trial_on_minimal_globalmaxod_yhr163w_8_factor).
has_representation(trial_on_minimal_globalmaxod_yhr163w_8_factor,'presence or absence of yhr163w').
has_input(trial_on_minimal_globalmaxod_yhr163w_8,trial_on_minimal_globalmaxod_yhr163w_8_data).
data(trial_on_minimal_globalmaxod_yhr163w_8_data).
has_part(trial_on_minimal_globalmaxod_yhr163w_8_data,'48 values for global max od of knockout on minimal medium').
has_part(trial_on_minimal_globalmaxod_yhr163w_8_data,'48 values for global max od of wild type on minimal medium').
has_proposition(trial_on_minimal_globalmaxod_yhr163w_8_data,'../data/').
link('../data/').
located_in(trial_on_minimal_globalmaxod_yhr163w_8,'mar07-trial2_expt001-plate006').
plate('mar07-trial2_expt001-plate006').
has_proposition(trial_on_minimal_globalmaxod_yhr163w_8,trial_on_minimal_globalmaxod_yhr163w_8_result).
result(trial_on_minimal_globalmaxod_yhr163w_8_result).
has_part(trial_on_minimal_globalmaxod_yhr163w_8_result,trial_on_minimal_globalmaxod_yhr163w_8_result_1).
has_representation(trial_on_minimal_globalmaxod_yhr163w_8_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_globalmaxod_yhr163w_8_result_1,'results/global_max_od_growth_kmedians.txt').
link('results/global_max_od_growth_kmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_yhr163w_8_result_1,trial_on_minimal_globalmaxod_yhr163w_8_result_1_proc).
procedure(trial_on_minimal_globalmaxod_yhr163w_8_result_1_proc).
has_representation(trial_on_minimal_globalmaxod_yhr163w_8_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_yhr163w_8_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_minimal_globalmaxod_yhr163w_8_result,trial_on_minimal_globalmaxod_yhr163w_8_result_2).
has_representation(trial_on_minimal_globalmaxod_yhr163w_8_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_globalmaxod_yhr163w_8_result_2,'results/global_max_od_growth_wmmedians.txt').
link('results/global_max_od_growth_wmmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_yhr163w_8_result_2,trial_on_minimal_globalmaxod_yhr163w_8_result_2_proc).
procedure(trial_on_minimal_globalmaxod_yhr163w_8_result_2_proc).
has_representation(trial_on_minimal_globalmaxod_yhr163w_8_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_yhr163w_8_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_globalmaxod_yhr163w,trial_on_minimal_globalmaxod_yhr163w_results).
result(trial_on_minimal_globalmaxod_yhr163w_results).
has_part(trial_on_minimal_globalmaxod_yhr163w_results,trial_on_minimal_globalmaxod_yhr163w_results_1).
has_representation(trial_on_minimal_globalmaxod_yhr163w_results_1,'median of knockout medians missing yhr163w').
text_representation('median of knockout medians missing yhr163w').
has_proposition(trial_on_minimal_globalmaxod_yhr163w_results_1,trial_on_minimal_globalmaxod_yhr163w_results_1_proc).
procedure(trial_on_minimal_globalmaxod_yhr163w_results_1_proc).
has_proposition(trial_on_minimal_globalmaxod_yhr163w_results_1_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_minimal_globalmaxod_yhr163w_results,trial_on_minimal_globalmaxod_yhr163w_results_2).
has_representation(trial_on_minimal_globalmaxod_yhr163w_results_2,'median of wild type medians').
text_representation('median of wild type medians').
has_proposition(trial_on_minimal_globalmaxod_yhr163w_results_2,trial_on_minimal_globalmaxod_yhr163w_results_2_proc).
procedure(trial_on_minimal_globalmaxod_yhr163w_results_2_proc).
has_proposition(trial_on_minimal_globalmaxod_yhr163w_results_2_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_minimal_globalmaxod_yhr163w_results,trial_on_minimal_globalmaxod_yhr163w_results_3).
has_representation(trial_on_minimal_globalmaxod_yhr163w_results_3,'difference between trial_on_minimal_globalmaxod_yhr163w_results_1 and trial_on_minimal_globalmaxod_yhr163w_results_2').
text_representation('difference between trial_on_minimal_globalmaxod_yhr163w_results_1 and trial_on_minimal_globalmaxod_yhr163w_results_2').
has_proposition(study_on_minimal_globalmaxod,study_on_minimal_globalmaxod_result).
result(study_on_minimal_globalmaxod_result).
has_part(study_on_minimal_globalmaxod_result,study_on_minimal_globalmaxod_result_1).
has_representation(study_on_minimal_globalmaxod_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_minimal_globalmaxod_result_1,'results/wm_km_global_max_od.csv').
link('results/wm_km_global_max_od.csv').
has_proposition(study_on_minimal_globalmaxod_result_1,study_on_minimal_globalmaxod_result_1_proc).
procedure(study_on_minimal_globalmaxod_result_1_proc).
has_proposition(study_on_minimal_globalmaxod_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_minimal_globalmaxod_result,study_on_minimal_globalmaxod_result_2).
has_representation(study_on_minimal_globalmaxod_result_2,'bar graph (histogram) plotting study_on_minimal_globalmaxod_result_1').
text_representation('bar graph (histogram) plotting study_on_minimal_globalmaxod_result_1').
has_proposition(study_on_minimal_globalmaxod_result_2,'results/overlayed_global_max_od0.8.tiff').
link('results/overlayed_global_max_od0.8.tiff').
has_proposition(study_on_minimal_globalmaxod_result_2,study_on_minimal_globalmaxod_result_2_proc).
procedure(study_on_minimal_globalmaxod_result_2_proc).
has_proposition(study_on_minimal_globalmaxod_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_minimal_globalmaxod,study_on_minimal_globalmaxod_conclusion).
conclusion(study_on_minimal_globalmaxod_conclusion).
has_representation(study_on_minimal_globalmaxod_conclusion,'The knockouts reach a higher global_max_od in minimal than the wild type').
text_representation('The knockouts reach a higher global_max_od in minimal than the wild type').
has_proposition(study_on_minimal_globalmaxod_conclusion,'obtain statistical mode of study_on_minimal_globalmaxod_result_1').
procedure('obtain statistical mode of study_on_minimal_globalmaxod_result_1').
text_representation('obtain statistical mode of study_on_minimal_globalmaxod_result_1').
has_part(study_on_minimal_globalmaxod,trial_on_minimal_globalmaxod_ydr035w).
trial(trial_on_minimal_globalmaxod_ydr035w).
has_agent(trial_on_minimal_globalmaxod_ydr035w,ydr035w).
strain(ydr035w).
has_proposition(trial_on_minimal_globalmaxod_ydr035w_1,trial_on_minimal_globalmaxod_ydr035w_1_design).
design(trial_on_minimal_globalmaxod_ydr035w_1_design).
has_proposition(trial_on_minimal_globalmaxod_ydr035w_1_design,trial_on_minimal_globalmaxod_ydr035w_1_factor).
factor(trial_on_minimal_globalmaxod_ydr035w_1_factor).
has_representation(trial_on_minimal_globalmaxod_ydr035w_1_factor,'presence or absence of ydr035w').
has_input(trial_on_minimal_globalmaxod_ydr035w_1,trial_on_minimal_globalmaxod_ydr035w_1_data).
data(trial_on_minimal_globalmaxod_ydr035w_1_data).
has_part(trial_on_minimal_globalmaxod_ydr035w_1_data,'48 values for global max od of knockout on minimal medium').
has_part(trial_on_minimal_globalmaxod_ydr035w_1_data,'48 values for global max od of wild type on minimal medium').
has_proposition(trial_on_minimal_globalmaxod_ydr035w_1_data,'../data/').
link('../data/').
located_in(trial_on_minimal_globalmaxod_ydr035w_1,'nature-loop3_expt001-plate006').
plate('nature-loop3_expt001-plate006').
has_proposition(trial_on_minimal_globalmaxod_ydr035w_1,trial_on_minimal_globalmaxod_ydr035w_1_result).
result(trial_on_minimal_globalmaxod_ydr035w_1_result).
has_part(trial_on_minimal_globalmaxod_ydr035w_1_result,trial_on_minimal_globalmaxod_ydr035w_1_result_1).
has_representation(trial_on_minimal_globalmaxod_ydr035w_1_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_globalmaxod_ydr035w_1_result_1,'results/global_max_od_growth_kmedians.txt').
link('results/global_max_od_growth_kmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ydr035w_1_result_1,trial_on_minimal_globalmaxod_ydr035w_1_result_1_proc).
procedure(trial_on_minimal_globalmaxod_ydr035w_1_result_1_proc).
has_representation(trial_on_minimal_globalmaxod_ydr035w_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_ydr035w_1_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_minimal_globalmaxod_ydr035w_1_result,trial_on_minimal_globalmaxod_ydr035w_1_result_2).
has_representation(trial_on_minimal_globalmaxod_ydr035w_1_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_globalmaxod_ydr035w_1_result_2,'results/global_max_od_growth_wmmedians.txt').
link('results/global_max_od_growth_wmmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ydr035w_1_result_2,trial_on_minimal_globalmaxod_ydr035w_1_result_2_proc).
procedure(trial_on_minimal_globalmaxod_ydr035w_1_result_2_proc).
has_representation(trial_on_minimal_globalmaxod_ydr035w_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_ydr035w_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_globalmaxod_ydr035w_2,trial_on_minimal_globalmaxod_ydr035w_2_design).
design(trial_on_minimal_globalmaxod_ydr035w_2_design).
has_proposition(trial_on_minimal_globalmaxod_ydr035w_2_design,trial_on_minimal_globalmaxod_ydr035w_2_factor).
factor(trial_on_minimal_globalmaxod_ydr035w_2_factor).
has_representation(trial_on_minimal_globalmaxod_ydr035w_2_factor,'presence or absence of ydr035w').
has_input(trial_on_minimal_globalmaxod_ydr035w_2,trial_on_minimal_globalmaxod_ydr035w_2_data).
data(trial_on_minimal_globalmaxod_ydr035w_2_data).
has_part(trial_on_minimal_globalmaxod_ydr035w_2_data,'48 values for global max od of knockout on minimal medium').
has_part(trial_on_minimal_globalmaxod_ydr035w_2_data,'48 values for global max od of wild type on minimal medium').
has_proposition(trial_on_minimal_globalmaxod_ydr035w_2_data,'../data/').
link('../data/').
located_in(trial_on_minimal_globalmaxod_ydr035w_2,'nature-loop3_expt002-plate003').
plate('nature-loop3_expt002-plate003').
has_proposition(trial_on_minimal_globalmaxod_ydr035w_2,trial_on_minimal_globalmaxod_ydr035w_2_result).
result(trial_on_minimal_globalmaxod_ydr035w_2_result).
has_part(trial_on_minimal_globalmaxod_ydr035w_2_result,trial_on_minimal_globalmaxod_ydr035w_2_result_1).
has_representation(trial_on_minimal_globalmaxod_ydr035w_2_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_globalmaxod_ydr035w_2_result_1,'results/global_max_od_growth_kmedians.txt').
link('results/global_max_od_growth_kmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ydr035w_2_result_1,trial_on_minimal_globalmaxod_ydr035w_2_result_1_proc).
procedure(trial_on_minimal_globalmaxod_ydr035w_2_result_1_proc).
has_representation(trial_on_minimal_globalmaxod_ydr035w_2_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_ydr035w_2_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_minimal_globalmaxod_ydr035w_2_result,trial_on_minimal_globalmaxod_ydr035w_2_result_2).
has_representation(trial_on_minimal_globalmaxod_ydr035w_2_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_globalmaxod_ydr035w_2_result_2,'results/global_max_od_growth_wmmedians.txt').
link('results/global_max_od_growth_wmmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ydr035w_2_result_2,trial_on_minimal_globalmaxod_ydr035w_2_result_2_proc).
procedure(trial_on_minimal_globalmaxod_ydr035w_2_result_2_proc).
has_representation(trial_on_minimal_globalmaxod_ydr035w_2_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_ydr035w_2_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_globalmaxod_ydr035w_3,trial_on_minimal_globalmaxod_ydr035w_3_design).
design(trial_on_minimal_globalmaxod_ydr035w_3_design).
has_proposition(trial_on_minimal_globalmaxod_ydr035w_3_design,trial_on_minimal_globalmaxod_ydr035w_3_factor).
factor(trial_on_minimal_globalmaxod_ydr035w_3_factor).
has_representation(trial_on_minimal_globalmaxod_ydr035w_3_factor,'presence or absence of ydr035w').
has_input(trial_on_minimal_globalmaxod_ydr035w_3,trial_on_minimal_globalmaxod_ydr035w_3_data).
data(trial_on_minimal_globalmaxod_ydr035w_3_data).
has_part(trial_on_minimal_globalmaxod_ydr035w_3_data,'48 values for global max od of knockout on minimal medium').
has_part(trial_on_minimal_globalmaxod_ydr035w_3_data,'48 values for global max od of wild type on minimal medium').
has_proposition(trial_on_minimal_globalmaxod_ydr035w_3_data,'../data/').
link('../data/').
located_in(trial_on_minimal_globalmaxod_ydr035w_3,'nature-loop3_expt003-plate006').
plate('nature-loop3_expt003-plate006').
has_proposition(trial_on_minimal_globalmaxod_ydr035w_3,trial_on_minimal_globalmaxod_ydr035w_3_result).
result(trial_on_minimal_globalmaxod_ydr035w_3_result).
has_part(trial_on_minimal_globalmaxod_ydr035w_3_result,trial_on_minimal_globalmaxod_ydr035w_3_result_1).
has_representation(trial_on_minimal_globalmaxod_ydr035w_3_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_globalmaxod_ydr035w_3_result_1,'results/global_max_od_growth_kmedians.txt').
link('results/global_max_od_growth_kmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ydr035w_3_result_1,trial_on_minimal_globalmaxod_ydr035w_3_result_1_proc).
procedure(trial_on_minimal_globalmaxod_ydr035w_3_result_1_proc).
has_representation(trial_on_minimal_globalmaxod_ydr035w_3_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_ydr035w_3_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_minimal_globalmaxod_ydr035w_3_result,trial_on_minimal_globalmaxod_ydr035w_3_result_2).
has_representation(trial_on_minimal_globalmaxod_ydr035w_3_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_globalmaxod_ydr035w_3_result_2,'results/global_max_od_growth_wmmedians.txt').
link('results/global_max_od_growth_wmmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ydr035w_3_result_2,trial_on_minimal_globalmaxod_ydr035w_3_result_2_proc).
procedure(trial_on_minimal_globalmaxod_ydr035w_3_result_2_proc).
has_representation(trial_on_minimal_globalmaxod_ydr035w_3_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_ydr035w_3_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_globalmaxod_ydr035w_4,trial_on_minimal_globalmaxod_ydr035w_4_design).
design(trial_on_minimal_globalmaxod_ydr035w_4_design).
has_proposition(trial_on_minimal_globalmaxod_ydr035w_4_design,trial_on_minimal_globalmaxod_ydr035w_4_factor).
factor(trial_on_minimal_globalmaxod_ydr035w_4_factor).
has_representation(trial_on_minimal_globalmaxod_ydr035w_4_factor,'presence or absence of ydr035w').
has_input(trial_on_minimal_globalmaxod_ydr035w_4,trial_on_minimal_globalmaxod_ydr035w_4_data).
data(trial_on_minimal_globalmaxod_ydr035w_4_data).
has_part(trial_on_minimal_globalmaxod_ydr035w_4_data,'48 values for global max od of knockout on minimal medium').
has_part(trial_on_minimal_globalmaxod_ydr035w_4_data,'48 values for global max od of wild type on minimal medium').
has_proposition(trial_on_minimal_globalmaxod_ydr035w_4_data,'../data/').
link('../data/').
located_in(trial_on_minimal_globalmaxod_ydr035w_4,'nature-loop3_expt004-plate003').
plate('nature-loop3_expt004-plate003').
has_proposition(trial_on_minimal_globalmaxod_ydr035w_4,trial_on_minimal_globalmaxod_ydr035w_4_result).
result(trial_on_minimal_globalmaxod_ydr035w_4_result).
has_part(trial_on_minimal_globalmaxod_ydr035w_4_result,trial_on_minimal_globalmaxod_ydr035w_4_result_1).
has_representation(trial_on_minimal_globalmaxod_ydr035w_4_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_globalmaxod_ydr035w_4_result_1,'results/global_max_od_growth_kmedians.txt').
link('results/global_max_od_growth_kmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ydr035w_4_result_1,trial_on_minimal_globalmaxod_ydr035w_4_result_1_proc).
procedure(trial_on_minimal_globalmaxod_ydr035w_4_result_1_proc).
has_representation(trial_on_minimal_globalmaxod_ydr035w_4_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_ydr035w_4_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_minimal_globalmaxod_ydr035w_4_result,trial_on_minimal_globalmaxod_ydr035w_4_result_2).
has_representation(trial_on_minimal_globalmaxod_ydr035w_4_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_globalmaxod_ydr035w_4_result_2,'results/global_max_od_growth_wmmedians.txt').
link('results/global_max_od_growth_wmmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ydr035w_4_result_2,trial_on_minimal_globalmaxod_ydr035w_4_result_2_proc).
procedure(trial_on_minimal_globalmaxod_ydr035w_4_result_2_proc).
has_representation(trial_on_minimal_globalmaxod_ydr035w_4_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_ydr035w_4_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_globalmaxod_ydr035w_5,trial_on_minimal_globalmaxod_ydr035w_5_design).
design(trial_on_minimal_globalmaxod_ydr035w_5_design).
has_proposition(trial_on_minimal_globalmaxod_ydr035w_5_design,trial_on_minimal_globalmaxod_ydr035w_5_factor).
factor(trial_on_minimal_globalmaxod_ydr035w_5_factor).
has_representation(trial_on_minimal_globalmaxod_ydr035w_5_factor,'presence or absence of ydr035w').
has_input(trial_on_minimal_globalmaxod_ydr035w_5,trial_on_minimal_globalmaxod_ydr035w_5_data).
data(trial_on_minimal_globalmaxod_ydr035w_5_data).
has_part(trial_on_minimal_globalmaxod_ydr035w_5_data,'48 values for global max od of knockout on minimal medium').
has_part(trial_on_minimal_globalmaxod_ydr035w_5_data,'48 values for global max od of wild type on minimal medium').
has_proposition(trial_on_minimal_globalmaxod_ydr035w_5_data,'../data/').
link('../data/').
located_in(trial_on_minimal_globalmaxod_ydr035w_5,'nature-loop3_expt005-plate003').
plate('nature-loop3_expt005-plate003').
has_proposition(trial_on_minimal_globalmaxod_ydr035w_5,trial_on_minimal_globalmaxod_ydr035w_5_result).
result(trial_on_minimal_globalmaxod_ydr035w_5_result).
has_part(trial_on_minimal_globalmaxod_ydr035w_5_result,trial_on_minimal_globalmaxod_ydr035w_5_result_1).
has_representation(trial_on_minimal_globalmaxod_ydr035w_5_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_globalmaxod_ydr035w_5_result_1,'results/global_max_od_growth_kmedians.txt').
link('results/global_max_od_growth_kmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ydr035w_5_result_1,trial_on_minimal_globalmaxod_ydr035w_5_result_1_proc).
procedure(trial_on_minimal_globalmaxod_ydr035w_5_result_1_proc).
has_representation(trial_on_minimal_globalmaxod_ydr035w_5_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_ydr035w_5_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_minimal_globalmaxod_ydr035w_5_result,trial_on_minimal_globalmaxod_ydr035w_5_result_2).
has_representation(trial_on_minimal_globalmaxod_ydr035w_5_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_globalmaxod_ydr035w_5_result_2,'results/global_max_od_growth_wmmedians.txt').
link('results/global_max_od_growth_wmmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ydr035w_5_result_2,trial_on_minimal_globalmaxod_ydr035w_5_result_2_proc).
procedure(trial_on_minimal_globalmaxod_ydr035w_5_result_2_proc).
has_representation(trial_on_minimal_globalmaxod_ydr035w_5_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_ydr035w_5_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_globalmaxod_ydr035w_6,trial_on_minimal_globalmaxod_ydr035w_6_design).
design(trial_on_minimal_globalmaxod_ydr035w_6_design).
has_proposition(trial_on_minimal_globalmaxod_ydr035w_6_design,trial_on_minimal_globalmaxod_ydr035w_6_factor).
factor(trial_on_minimal_globalmaxod_ydr035w_6_factor).
has_representation(trial_on_minimal_globalmaxod_ydr035w_6_factor,'presence or absence of ydr035w').
has_input(trial_on_minimal_globalmaxod_ydr035w_6,trial_on_minimal_globalmaxod_ydr035w_6_data).
data(trial_on_minimal_globalmaxod_ydr035w_6_data).
has_part(trial_on_minimal_globalmaxod_ydr035w_6_data,'48 values for global max od of knockout on minimal medium').
has_part(trial_on_minimal_globalmaxod_ydr035w_6_data,'48 values for global max od of wild type on minimal medium').
has_proposition(trial_on_minimal_globalmaxod_ydr035w_6_data,'../data/').
link('../data/').
located_in(trial_on_minimal_globalmaxod_ydr035w_6,'nature-loop1_expt001-plate006').
plate('nature-loop1_expt001-plate006').
has_proposition(trial_on_minimal_globalmaxod_ydr035w_6,trial_on_minimal_globalmaxod_ydr035w_6_result).
result(trial_on_minimal_globalmaxod_ydr035w_6_result).
has_part(trial_on_minimal_globalmaxod_ydr035w_6_result,trial_on_minimal_globalmaxod_ydr035w_6_result_1).
has_representation(trial_on_minimal_globalmaxod_ydr035w_6_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_globalmaxod_ydr035w_6_result_1,'results/global_max_od_growth_kmedians.txt').
link('results/global_max_od_growth_kmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ydr035w_6_result_1,trial_on_minimal_globalmaxod_ydr035w_6_result_1_proc).
procedure(trial_on_minimal_globalmaxod_ydr035w_6_result_1_proc).
has_representation(trial_on_minimal_globalmaxod_ydr035w_6_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_ydr035w_6_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_minimal_globalmaxod_ydr035w_6_result,trial_on_minimal_globalmaxod_ydr035w_6_result_2).
has_representation(trial_on_minimal_globalmaxod_ydr035w_6_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_globalmaxod_ydr035w_6_result_2,'results/global_max_od_growth_wmmedians.txt').
link('results/global_max_od_growth_wmmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ydr035w_6_result_2,trial_on_minimal_globalmaxod_ydr035w_6_result_2_proc).
procedure(trial_on_minimal_globalmaxod_ydr035w_6_result_2_proc).
has_representation(trial_on_minimal_globalmaxod_ydr035w_6_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_ydr035w_6_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_globalmaxod_ydr035w_7,trial_on_minimal_globalmaxod_ydr035w_7_design).
design(trial_on_minimal_globalmaxod_ydr035w_7_design).
has_proposition(trial_on_minimal_globalmaxod_ydr035w_7_design,trial_on_minimal_globalmaxod_ydr035w_7_factor).
factor(trial_on_minimal_globalmaxod_ydr035w_7_factor).
has_representation(trial_on_minimal_globalmaxod_ydr035w_7_factor,'presence or absence of ydr035w').
has_input(trial_on_minimal_globalmaxod_ydr035w_7,trial_on_minimal_globalmaxod_ydr035w_7_data).
data(trial_on_minimal_globalmaxod_ydr035w_7_data).
has_part(trial_on_minimal_globalmaxod_ydr035w_7_data,'48 values for global max od of knockout on minimal medium').
has_part(trial_on_minimal_globalmaxod_ydr035w_7_data,'48 values for global max od of wild type on minimal medium').
has_proposition(trial_on_minimal_globalmaxod_ydr035w_7_data,'../data/').
link('../data/').
located_in(trial_on_minimal_globalmaxod_ydr035w_7,'nature-loop2_expt001-plate002').
plate('nature-loop2_expt001-plate002').
has_proposition(trial_on_minimal_globalmaxod_ydr035w_7,trial_on_minimal_globalmaxod_ydr035w_7_result).
result(trial_on_minimal_globalmaxod_ydr035w_7_result).
has_part(trial_on_minimal_globalmaxod_ydr035w_7_result,trial_on_minimal_globalmaxod_ydr035w_7_result_1).
has_representation(trial_on_minimal_globalmaxod_ydr035w_7_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_globalmaxod_ydr035w_7_result_1,'results/global_max_od_growth_kmedians.txt').
link('results/global_max_od_growth_kmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ydr035w_7_result_1,trial_on_minimal_globalmaxod_ydr035w_7_result_1_proc).
procedure(trial_on_minimal_globalmaxod_ydr035w_7_result_1_proc).
has_representation(trial_on_minimal_globalmaxod_ydr035w_7_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_ydr035w_7_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_minimal_globalmaxod_ydr035w_7_result,trial_on_minimal_globalmaxod_ydr035w_7_result_2).
has_representation(trial_on_minimal_globalmaxod_ydr035w_7_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_globalmaxod_ydr035w_7_result_2,'results/global_max_od_growth_wmmedians.txt').
link('results/global_max_od_growth_wmmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ydr035w_7_result_2,trial_on_minimal_globalmaxod_ydr035w_7_result_2_proc).
procedure(trial_on_minimal_globalmaxod_ydr035w_7_result_2_proc).
has_representation(trial_on_minimal_globalmaxod_ydr035w_7_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_ydr035w_7_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_globalmaxod_ydr035w_8,trial_on_minimal_globalmaxod_ydr035w_8_design).
design(trial_on_minimal_globalmaxod_ydr035w_8_design).
has_proposition(trial_on_minimal_globalmaxod_ydr035w_8_design,trial_on_minimal_globalmaxod_ydr035w_8_factor).
factor(trial_on_minimal_globalmaxod_ydr035w_8_factor).
has_representation(trial_on_minimal_globalmaxod_ydr035w_8_factor,'presence or absence of ydr035w').
has_input(trial_on_minimal_globalmaxod_ydr035w_8,trial_on_minimal_globalmaxod_ydr035w_8_data).
data(trial_on_minimal_globalmaxod_ydr035w_8_data).
has_part(trial_on_minimal_globalmaxod_ydr035w_8_data,'48 values for global max od of knockout on minimal medium').
has_part(trial_on_minimal_globalmaxod_ydr035w_8_data,'48 values for global max od of wild type on minimal medium').
has_proposition(trial_on_minimal_globalmaxod_ydr035w_8_data,'../data/').
link('../data/').
located_in(trial_on_minimal_globalmaxod_ydr035w_8,'nature-loop2_expt001-plate009').
plate('nature-loop2_expt001-plate009').
has_proposition(trial_on_minimal_globalmaxod_ydr035w_8,trial_on_minimal_globalmaxod_ydr035w_8_result).
result(trial_on_minimal_globalmaxod_ydr035w_8_result).
has_part(trial_on_minimal_globalmaxod_ydr035w_8_result,trial_on_minimal_globalmaxod_ydr035w_8_result_1).
has_representation(trial_on_minimal_globalmaxod_ydr035w_8_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_globalmaxod_ydr035w_8_result_1,'results/global_max_od_growth_kmedians.txt').
link('results/global_max_od_growth_kmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ydr035w_8_result_1,trial_on_minimal_globalmaxod_ydr035w_8_result_1_proc).
procedure(trial_on_minimal_globalmaxod_ydr035w_8_result_1_proc).
has_representation(trial_on_minimal_globalmaxod_ydr035w_8_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_ydr035w_8_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_minimal_globalmaxod_ydr035w_8_result,trial_on_minimal_globalmaxod_ydr035w_8_result_2).
has_representation(trial_on_minimal_globalmaxod_ydr035w_8_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_globalmaxod_ydr035w_8_result_2,'results/global_max_od_growth_wmmedians.txt').
link('results/global_max_od_growth_wmmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ydr035w_8_result_2,trial_on_minimal_globalmaxod_ydr035w_8_result_2_proc).
procedure(trial_on_minimal_globalmaxod_ydr035w_8_result_2_proc).
has_representation(trial_on_minimal_globalmaxod_ydr035w_8_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_ydr035w_8_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_globalmaxod_ydr035w_9,trial_on_minimal_globalmaxod_ydr035w_9_design).
design(trial_on_minimal_globalmaxod_ydr035w_9_design).
has_proposition(trial_on_minimal_globalmaxod_ydr035w_9_design,trial_on_minimal_globalmaxod_ydr035w_9_factor).
factor(trial_on_minimal_globalmaxod_ydr035w_9_factor).
has_representation(trial_on_minimal_globalmaxod_ydr035w_9_factor,'presence or absence of ydr035w').
has_input(trial_on_minimal_globalmaxod_ydr035w_9,trial_on_minimal_globalmaxod_ydr035w_9_data).
data(trial_on_minimal_globalmaxod_ydr035w_9_data).
has_part(trial_on_minimal_globalmaxod_ydr035w_9_data,'48 values for global max od of knockout on minimal medium').
has_part(trial_on_minimal_globalmaxod_ydr035w_9_data,'48 values for global max od of wild type on minimal medium').
has_proposition(trial_on_minimal_globalmaxod_ydr035w_9_data,'../data/').
link('../data/').
located_in(trial_on_minimal_globalmaxod_ydr035w_9,'nature-loop3_expt006-plate002').
plate('nature-loop3_expt006-plate002').
has_proposition(trial_on_minimal_globalmaxod_ydr035w_9,trial_on_minimal_globalmaxod_ydr035w_9_result).
result(trial_on_minimal_globalmaxod_ydr035w_9_result).
has_part(trial_on_minimal_globalmaxod_ydr035w_9_result,trial_on_minimal_globalmaxod_ydr035w_9_result_1).
has_representation(trial_on_minimal_globalmaxod_ydr035w_9_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_globalmaxod_ydr035w_9_result_1,'results/global_max_od_growth_kmedians.txt').
link('results/global_max_od_growth_kmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ydr035w_9_result_1,trial_on_minimal_globalmaxod_ydr035w_9_result_1_proc).
procedure(trial_on_minimal_globalmaxod_ydr035w_9_result_1_proc).
has_representation(trial_on_minimal_globalmaxod_ydr035w_9_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_ydr035w_9_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_minimal_globalmaxod_ydr035w_9_result,trial_on_minimal_globalmaxod_ydr035w_9_result_2).
has_representation(trial_on_minimal_globalmaxod_ydr035w_9_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_globalmaxod_ydr035w_9_result_2,'results/global_max_od_growth_wmmedians.txt').
link('results/global_max_od_growth_wmmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ydr035w_9_result_2,trial_on_minimal_globalmaxod_ydr035w_9_result_2_proc).
procedure(trial_on_minimal_globalmaxod_ydr035w_9_result_2_proc).
has_representation(trial_on_minimal_globalmaxod_ydr035w_9_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_ydr035w_9_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_globalmaxod_ydr035w,trial_on_minimal_globalmaxod_ydr035w_results).
result(trial_on_minimal_globalmaxod_ydr035w_results).
has_part(trial_on_minimal_globalmaxod_ydr035w_results,trial_on_minimal_globalmaxod_ydr035w_results_1).
has_representation(trial_on_minimal_globalmaxod_ydr035w_results_1,'median of knockout medians missing ydr035w').
text_representation('median of knockout medians missing ydr035w').
has_proposition(trial_on_minimal_globalmaxod_ydr035w_results_1,trial_on_minimal_globalmaxod_ydr035w_results_1_proc).
procedure(trial_on_minimal_globalmaxod_ydr035w_results_1_proc).
has_proposition(trial_on_minimal_globalmaxod_ydr035w_results_1_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_minimal_globalmaxod_ydr035w_results,trial_on_minimal_globalmaxod_ydr035w_results_2).
has_representation(trial_on_minimal_globalmaxod_ydr035w_results_2,'median of wild type medians').
text_representation('median of wild type medians').
has_proposition(trial_on_minimal_globalmaxod_ydr035w_results_2,trial_on_minimal_globalmaxod_ydr035w_results_2_proc).
procedure(trial_on_minimal_globalmaxod_ydr035w_results_2_proc).
has_proposition(trial_on_minimal_globalmaxod_ydr035w_results_2_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_minimal_globalmaxod_ydr035w_results,trial_on_minimal_globalmaxod_ydr035w_results_3).
has_representation(trial_on_minimal_globalmaxod_ydr035w_results_3,'difference between trial_on_minimal_globalmaxod_ydr035w_results_1 and trial_on_minimal_globalmaxod_ydr035w_results_2').
text_representation('difference between trial_on_minimal_globalmaxod_ydr035w_results_1 and trial_on_minimal_globalmaxod_ydr035w_results_2').
has_proposition(study_on_minimal_globalmaxod,study_on_minimal_globalmaxod_result).
result(study_on_minimal_globalmaxod_result).
has_part(study_on_minimal_globalmaxod_result,study_on_minimal_globalmaxod_result_1).
has_representation(study_on_minimal_globalmaxod_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_minimal_globalmaxod_result_1,'results/wm_km_global_max_od.csv').
link('results/wm_km_global_max_od.csv').
has_proposition(study_on_minimal_globalmaxod_result_1,study_on_minimal_globalmaxod_result_1_proc).
procedure(study_on_minimal_globalmaxod_result_1_proc).
has_proposition(study_on_minimal_globalmaxod_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_minimal_globalmaxod_result,study_on_minimal_globalmaxod_result_2).
has_representation(study_on_minimal_globalmaxod_result_2,'bar graph (histogram) plotting study_on_minimal_globalmaxod_result_1').
text_representation('bar graph (histogram) plotting study_on_minimal_globalmaxod_result_1').
has_proposition(study_on_minimal_globalmaxod_result_2,'results/overlayed_global_max_od0.8.tiff').
link('results/overlayed_global_max_od0.8.tiff').
has_proposition(study_on_minimal_globalmaxod_result_2,study_on_minimal_globalmaxod_result_2_proc).
procedure(study_on_minimal_globalmaxod_result_2_proc).
has_proposition(study_on_minimal_globalmaxod_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_minimal_globalmaxod,study_on_minimal_globalmaxod_conclusion).
conclusion(study_on_minimal_globalmaxod_conclusion).
has_representation(study_on_minimal_globalmaxod_conclusion,'The knockouts reach a higher global_max_od in minimal than the wild type').
text_representation('The knockouts reach a higher global_max_od in minimal than the wild type').
has_proposition(study_on_minimal_globalmaxod_conclusion,'obtain statistical mode of study_on_minimal_globalmaxod_result_1').
procedure('obtain statistical mode of study_on_minimal_globalmaxod_result_1').
text_representation('obtain statistical mode of study_on_minimal_globalmaxod_result_1').
has_part(study_on_minimal_globalmaxod,trial_on_minimal_globalmaxod_ygr248w).
trial(trial_on_minimal_globalmaxod_ygr248w).
has_agent(trial_on_minimal_globalmaxod_ygr248w,ygr248w).
strain(ygr248w).
has_proposition(trial_on_minimal_globalmaxod_ygr248w_1,trial_on_minimal_globalmaxod_ygr248w_1_design).
design(trial_on_minimal_globalmaxod_ygr248w_1_design).
has_proposition(trial_on_minimal_globalmaxod_ygr248w_1_design,trial_on_minimal_globalmaxod_ygr248w_1_factor).
factor(trial_on_minimal_globalmaxod_ygr248w_1_factor).
has_representation(trial_on_minimal_globalmaxod_ygr248w_1_factor,'presence or absence of ygr248w').
has_input(trial_on_minimal_globalmaxod_ygr248w_1,trial_on_minimal_globalmaxod_ygr248w_1_data).
data(trial_on_minimal_globalmaxod_ygr248w_1_data).
has_part(trial_on_minimal_globalmaxod_ygr248w_1_data,'48 values for global max od of knockout on minimal medium').
has_part(trial_on_minimal_globalmaxod_ygr248w_1_data,'48 values for global max od of wild type on minimal medium').
has_proposition(trial_on_minimal_globalmaxod_ygr248w_1_data,'../data/').
link('../data/').
located_in(trial_on_minimal_globalmaxod_ygr248w_1,'feb07-trial1_expt001-plate008').
plate('feb07-trial1_expt001-plate008').
has_proposition(trial_on_minimal_globalmaxod_ygr248w_1,trial_on_minimal_globalmaxod_ygr248w_1_result).
result(trial_on_minimal_globalmaxod_ygr248w_1_result).
has_part(trial_on_minimal_globalmaxod_ygr248w_1_result,trial_on_minimal_globalmaxod_ygr248w_1_result_1).
has_representation(trial_on_minimal_globalmaxod_ygr248w_1_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_globalmaxod_ygr248w_1_result_1,'results/global_max_od_growth_kmedians.txt').
link('results/global_max_od_growth_kmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ygr248w_1_result_1,trial_on_minimal_globalmaxod_ygr248w_1_result_1_proc).
procedure(trial_on_minimal_globalmaxod_ygr248w_1_result_1_proc).
has_representation(trial_on_minimal_globalmaxod_ygr248w_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_ygr248w_1_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_minimal_globalmaxod_ygr248w_1_result,trial_on_minimal_globalmaxod_ygr248w_1_result_2).
has_representation(trial_on_minimal_globalmaxod_ygr248w_1_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_globalmaxod_ygr248w_1_result_2,'results/global_max_od_growth_wmmedians.txt').
link('results/global_max_od_growth_wmmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ygr248w_1_result_2,trial_on_minimal_globalmaxod_ygr248w_1_result_2_proc).
procedure(trial_on_minimal_globalmaxod_ygr248w_1_result_2_proc).
has_representation(trial_on_minimal_globalmaxod_ygr248w_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_ygr248w_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_globalmaxod_ygr248w_2,trial_on_minimal_globalmaxod_ygr248w_2_design).
design(trial_on_minimal_globalmaxod_ygr248w_2_design).
has_proposition(trial_on_minimal_globalmaxod_ygr248w_2_design,trial_on_minimal_globalmaxod_ygr248w_2_factor).
factor(trial_on_minimal_globalmaxod_ygr248w_2_factor).
has_representation(trial_on_minimal_globalmaxod_ygr248w_2_factor,'presence or absence of ygr248w').
has_input(trial_on_minimal_globalmaxod_ygr248w_2,trial_on_minimal_globalmaxod_ygr248w_2_data).
data(trial_on_minimal_globalmaxod_ygr248w_2_data).
has_part(trial_on_minimal_globalmaxod_ygr248w_2_data,'48 values for global max od of knockout on minimal medium').
has_part(trial_on_minimal_globalmaxod_ygr248w_2_data,'48 values for global max od of wild type on minimal medium').
has_proposition(trial_on_minimal_globalmaxod_ygr248w_2_data,'../data/').
link('../data/').
located_in(trial_on_minimal_globalmaxod_ygr248w_2,'feb07-trial1_expt001-plate009').
plate('feb07-trial1_expt001-plate009').
has_proposition(trial_on_minimal_globalmaxod_ygr248w_2,trial_on_minimal_globalmaxod_ygr248w_2_result).
result(trial_on_minimal_globalmaxod_ygr248w_2_result).
has_part(trial_on_minimal_globalmaxod_ygr248w_2_result,trial_on_minimal_globalmaxod_ygr248w_2_result_1).
has_representation(trial_on_minimal_globalmaxod_ygr248w_2_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_globalmaxod_ygr248w_2_result_1,'results/global_max_od_growth_kmedians.txt').
link('results/global_max_od_growth_kmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ygr248w_2_result_1,trial_on_minimal_globalmaxod_ygr248w_2_result_1_proc).
procedure(trial_on_minimal_globalmaxod_ygr248w_2_result_1_proc).
has_representation(trial_on_minimal_globalmaxod_ygr248w_2_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_ygr248w_2_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_minimal_globalmaxod_ygr248w_2_result,trial_on_minimal_globalmaxod_ygr248w_2_result_2).
has_representation(trial_on_minimal_globalmaxod_ygr248w_2_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_globalmaxod_ygr248w_2_result_2,'results/global_max_od_growth_wmmedians.txt').
link('results/global_max_od_growth_wmmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ygr248w_2_result_2,trial_on_minimal_globalmaxod_ygr248w_2_result_2_proc).
procedure(trial_on_minimal_globalmaxod_ygr248w_2_result_2_proc).
has_representation(trial_on_minimal_globalmaxod_ygr248w_2_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_ygr248w_2_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_globalmaxod_ygr248w,trial_on_minimal_globalmaxod_ygr248w_results).
result(trial_on_minimal_globalmaxod_ygr248w_results).
has_part(trial_on_minimal_globalmaxod_ygr248w_results,trial_on_minimal_globalmaxod_ygr248w_results_1).
has_representation(trial_on_minimal_globalmaxod_ygr248w_results_1,'median of knockout medians missing ygr248w').
text_representation('median of knockout medians missing ygr248w').
has_proposition(trial_on_minimal_globalmaxod_ygr248w_results_1,trial_on_minimal_globalmaxod_ygr248w_results_1_proc).
procedure(trial_on_minimal_globalmaxod_ygr248w_results_1_proc).
has_proposition(trial_on_minimal_globalmaxod_ygr248w_results_1_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_minimal_globalmaxod_ygr248w_results,trial_on_minimal_globalmaxod_ygr248w_results_2).
has_representation(trial_on_minimal_globalmaxod_ygr248w_results_2,'median of wild type medians').
text_representation('median of wild type medians').
has_proposition(trial_on_minimal_globalmaxod_ygr248w_results_2,trial_on_minimal_globalmaxod_ygr248w_results_2_proc).
procedure(trial_on_minimal_globalmaxod_ygr248w_results_2_proc).
has_proposition(trial_on_minimal_globalmaxod_ygr248w_results_2_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_minimal_globalmaxod_ygr248w_results,trial_on_minimal_globalmaxod_ygr248w_results_3).
has_representation(trial_on_minimal_globalmaxod_ygr248w_results_3,'difference between trial_on_minimal_globalmaxod_ygr248w_results_1 and trial_on_minimal_globalmaxod_ygr248w_results_2').
text_representation('difference between trial_on_minimal_globalmaxod_ygr248w_results_1 and trial_on_minimal_globalmaxod_ygr248w_results_2').
has_proposition(study_on_minimal_globalmaxod,study_on_minimal_globalmaxod_result).
result(study_on_minimal_globalmaxod_result).
has_part(study_on_minimal_globalmaxod_result,study_on_minimal_globalmaxod_result_1).
has_representation(study_on_minimal_globalmaxod_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_minimal_globalmaxod_result_1,'results/wm_km_global_max_od.csv').
link('results/wm_km_global_max_od.csv').
has_proposition(study_on_minimal_globalmaxod_result_1,study_on_minimal_globalmaxod_result_1_proc).
procedure(study_on_minimal_globalmaxod_result_1_proc).
has_proposition(study_on_minimal_globalmaxod_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_minimal_globalmaxod_result,study_on_minimal_globalmaxod_result_2).
has_representation(study_on_minimal_globalmaxod_result_2,'bar graph (histogram) plotting study_on_minimal_globalmaxod_result_1').
text_representation('bar graph (histogram) plotting study_on_minimal_globalmaxod_result_1').
has_proposition(study_on_minimal_globalmaxod_result_2,'results/overlayed_global_max_od0.8.tiff').
link('results/overlayed_global_max_od0.8.tiff').
has_proposition(study_on_minimal_globalmaxod_result_2,study_on_minimal_globalmaxod_result_2_proc).
procedure(study_on_minimal_globalmaxod_result_2_proc).
has_proposition(study_on_minimal_globalmaxod_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_minimal_globalmaxod,study_on_minimal_globalmaxod_conclusion).
conclusion(study_on_minimal_globalmaxod_conclusion).
has_representation(study_on_minimal_globalmaxod_conclusion,'The knockouts reach a higher global_max_od in minimal than the wild type').
text_representation('The knockouts reach a higher global_max_od in minimal than the wild type').
has_proposition(study_on_minimal_globalmaxod_conclusion,'obtain statistical mode of study_on_minimal_globalmaxod_result_1').
procedure('obtain statistical mode of study_on_minimal_globalmaxod_result_1').
text_representation('obtain statistical mode of study_on_minimal_globalmaxod_result_1').
has_part(study_on_minimal_globalmaxod,trial_on_minimal_globalmaxod_ymr020w).
trial(trial_on_minimal_globalmaxod_ymr020w).
has_agent(trial_on_minimal_globalmaxod_ymr020w,ymr020w).
strain(ymr020w).
has_proposition(trial_on_minimal_globalmaxod_ymr020w_1,trial_on_minimal_globalmaxod_ymr020w_1_design).
design(trial_on_minimal_globalmaxod_ymr020w_1_design).
has_proposition(trial_on_minimal_globalmaxod_ymr020w_1_design,trial_on_minimal_globalmaxod_ymr020w_1_factor).
factor(trial_on_minimal_globalmaxod_ymr020w_1_factor).
has_representation(trial_on_minimal_globalmaxod_ymr020w_1_factor,'presence or absence of ymr020w').
has_input(trial_on_minimal_globalmaxod_ymr020w_1,trial_on_minimal_globalmaxod_ymr020w_1_data).
data(trial_on_minimal_globalmaxod_ymr020w_1_data).
has_part(trial_on_minimal_globalmaxod_ymr020w_1_data,'48 values for global max od of knockout on minimal medium').
has_part(trial_on_minimal_globalmaxod_ymr020w_1_data,'48 values for global max od of wild type on minimal medium').
has_proposition(trial_on_minimal_globalmaxod_ymr020w_1_data,'../data/').
link('../data/').
located_in(trial_on_minimal_globalmaxod_ymr020w_1,'mar07-trial4_expt1-plate003').
plate('mar07-trial4_expt1-plate003').
has_proposition(trial_on_minimal_globalmaxod_ymr020w_1,trial_on_minimal_globalmaxod_ymr020w_1_result).
result(trial_on_minimal_globalmaxod_ymr020w_1_result).
has_part(trial_on_minimal_globalmaxod_ymr020w_1_result,trial_on_minimal_globalmaxod_ymr020w_1_result_1).
has_representation(trial_on_minimal_globalmaxod_ymr020w_1_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_globalmaxod_ymr020w_1_result_1,'results/global_max_od_growth_kmedians.txt').
link('results/global_max_od_growth_kmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ymr020w_1_result_1,trial_on_minimal_globalmaxod_ymr020w_1_result_1_proc).
procedure(trial_on_minimal_globalmaxod_ymr020w_1_result_1_proc).
has_representation(trial_on_minimal_globalmaxod_ymr020w_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_ymr020w_1_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_minimal_globalmaxod_ymr020w_1_result,trial_on_minimal_globalmaxod_ymr020w_1_result_2).
has_representation(trial_on_minimal_globalmaxod_ymr020w_1_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_globalmaxod_ymr020w_1_result_2,'results/global_max_od_growth_wmmedians.txt').
link('results/global_max_od_growth_wmmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ymr020w_1_result_2,trial_on_minimal_globalmaxod_ymr020w_1_result_2_proc).
procedure(trial_on_minimal_globalmaxod_ymr020w_1_result_2_proc).
has_representation(trial_on_minimal_globalmaxod_ymr020w_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_ymr020w_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_globalmaxod_ymr020w_2,trial_on_minimal_globalmaxod_ymr020w_2_design).
design(trial_on_minimal_globalmaxod_ymr020w_2_design).
has_proposition(trial_on_minimal_globalmaxod_ymr020w_2_design,trial_on_minimal_globalmaxod_ymr020w_2_factor).
factor(trial_on_minimal_globalmaxod_ymr020w_2_factor).
has_representation(trial_on_minimal_globalmaxod_ymr020w_2_factor,'presence or absence of ymr020w').
has_input(trial_on_minimal_globalmaxod_ymr020w_2,trial_on_minimal_globalmaxod_ymr020w_2_data).
data(trial_on_minimal_globalmaxod_ymr020w_2_data).
has_part(trial_on_minimal_globalmaxod_ymr020w_2_data,'48 values for global max od of knockout on minimal medium').
has_part(trial_on_minimal_globalmaxod_ymr020w_2_data,'48 values for global max od of wild type on minimal medium').
has_proposition(trial_on_minimal_globalmaxod_ymr020w_2_data,'../data/').
link('../data/').
located_in(trial_on_minimal_globalmaxod_ymr020w_2,'mar07-trial5_expt001-plate006').
plate('mar07-trial5_expt001-plate006').
has_proposition(trial_on_minimal_globalmaxod_ymr020w_2,trial_on_minimal_globalmaxod_ymr020w_2_result).
result(trial_on_minimal_globalmaxod_ymr020w_2_result).
has_part(trial_on_minimal_globalmaxod_ymr020w_2_result,trial_on_minimal_globalmaxod_ymr020w_2_result_1).
has_representation(trial_on_minimal_globalmaxod_ymr020w_2_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_globalmaxod_ymr020w_2_result_1,'results/global_max_od_growth_kmedians.txt').
link('results/global_max_od_growth_kmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ymr020w_2_result_1,trial_on_minimal_globalmaxod_ymr020w_2_result_1_proc).
procedure(trial_on_minimal_globalmaxod_ymr020w_2_result_1_proc).
has_representation(trial_on_minimal_globalmaxod_ymr020w_2_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_ymr020w_2_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_minimal_globalmaxod_ymr020w_2_result,trial_on_minimal_globalmaxod_ymr020w_2_result_2).
has_representation(trial_on_minimal_globalmaxod_ymr020w_2_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_globalmaxod_ymr020w_2_result_2,'results/global_max_od_growth_wmmedians.txt').
link('results/global_max_od_growth_wmmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ymr020w_2_result_2,trial_on_minimal_globalmaxod_ymr020w_2_result_2_proc).
procedure(trial_on_minimal_globalmaxod_ymr020w_2_result_2_proc).
has_representation(trial_on_minimal_globalmaxod_ymr020w_2_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_ymr020w_2_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_globalmaxod_ymr020w_3,trial_on_minimal_globalmaxod_ymr020w_3_design).
design(trial_on_minimal_globalmaxod_ymr020w_3_design).
has_proposition(trial_on_minimal_globalmaxod_ymr020w_3_design,trial_on_minimal_globalmaxod_ymr020w_3_factor).
factor(trial_on_minimal_globalmaxod_ymr020w_3_factor).
has_representation(trial_on_minimal_globalmaxod_ymr020w_3_factor,'presence or absence of ymr020w').
has_input(trial_on_minimal_globalmaxod_ymr020w_3,trial_on_minimal_globalmaxod_ymr020w_3_data).
data(trial_on_minimal_globalmaxod_ymr020w_3_data).
has_part(trial_on_minimal_globalmaxod_ymr020w_3_data,'48 values for global max od of knockout on minimal medium').
has_part(trial_on_minimal_globalmaxod_ymr020w_3_data,'48 values for global max od of wild type on minimal medium').
has_proposition(trial_on_minimal_globalmaxod_ymr020w_3_data,'../data/').
link('../data/').
located_in(trial_on_minimal_globalmaxod_ymr020w_3,'mar07-trial7_expt001-plate004').
plate('mar07-trial7_expt001-plate004').
has_proposition(trial_on_minimal_globalmaxod_ymr020w_3,trial_on_minimal_globalmaxod_ymr020w_3_result).
result(trial_on_minimal_globalmaxod_ymr020w_3_result).
has_part(trial_on_minimal_globalmaxod_ymr020w_3_result,trial_on_minimal_globalmaxod_ymr020w_3_result_1).
has_representation(trial_on_minimal_globalmaxod_ymr020w_3_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_globalmaxod_ymr020w_3_result_1,'results/global_max_od_growth_kmedians.txt').
link('results/global_max_od_growth_kmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ymr020w_3_result_1,trial_on_minimal_globalmaxod_ymr020w_3_result_1_proc).
procedure(trial_on_minimal_globalmaxod_ymr020w_3_result_1_proc).
has_representation(trial_on_minimal_globalmaxod_ymr020w_3_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_ymr020w_3_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_minimal_globalmaxod_ymr020w_3_result,trial_on_minimal_globalmaxod_ymr020w_3_result_2).
has_representation(trial_on_minimal_globalmaxod_ymr020w_3_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_globalmaxod_ymr020w_3_result_2,'results/global_max_od_growth_wmmedians.txt').
link('results/global_max_od_growth_wmmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ymr020w_3_result_2,trial_on_minimal_globalmaxod_ymr020w_3_result_2_proc).
procedure(trial_on_minimal_globalmaxod_ymr020w_3_result_2_proc).
has_representation(trial_on_minimal_globalmaxod_ymr020w_3_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_ymr020w_3_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_globalmaxod_ymr020w_4,trial_on_minimal_globalmaxod_ymr020w_4_design).
design(trial_on_minimal_globalmaxod_ymr020w_4_design).
has_proposition(trial_on_minimal_globalmaxod_ymr020w_4_design,trial_on_minimal_globalmaxod_ymr020w_4_factor).
factor(trial_on_minimal_globalmaxod_ymr020w_4_factor).
has_representation(trial_on_minimal_globalmaxod_ymr020w_4_factor,'presence or absence of ymr020w').
has_input(trial_on_minimal_globalmaxod_ymr020w_4,trial_on_minimal_globalmaxod_ymr020w_4_data).
data(trial_on_minimal_globalmaxod_ymr020w_4_data).
has_part(trial_on_minimal_globalmaxod_ymr020w_4_data,'48 values for global max od of knockout on minimal medium').
has_part(trial_on_minimal_globalmaxod_ymr020w_4_data,'48 values for global max od of wild type on minimal medium').
has_proposition(trial_on_minimal_globalmaxod_ymr020w_4_data,'../data/').
link('../data/').
located_in(trial_on_minimal_globalmaxod_ymr020w_4,'mar07-trial7_expt001-plate006').
plate('mar07-trial7_expt001-plate006').
has_proposition(trial_on_minimal_globalmaxod_ymr020w_4,trial_on_minimal_globalmaxod_ymr020w_4_result).
result(trial_on_minimal_globalmaxod_ymr020w_4_result).
has_part(trial_on_minimal_globalmaxod_ymr020w_4_result,trial_on_minimal_globalmaxod_ymr020w_4_result_1).
has_representation(trial_on_minimal_globalmaxod_ymr020w_4_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_globalmaxod_ymr020w_4_result_1,'results/global_max_od_growth_kmedians.txt').
link('results/global_max_od_growth_kmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ymr020w_4_result_1,trial_on_minimal_globalmaxod_ymr020w_4_result_1_proc).
procedure(trial_on_minimal_globalmaxod_ymr020w_4_result_1_proc).
has_representation(trial_on_minimal_globalmaxod_ymr020w_4_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_ymr020w_4_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_minimal_globalmaxod_ymr020w_4_result,trial_on_minimal_globalmaxod_ymr020w_4_result_2).
has_representation(trial_on_minimal_globalmaxod_ymr020w_4_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_globalmaxod_ymr020w_4_result_2,'results/global_max_od_growth_wmmedians.txt').
link('results/global_max_od_growth_wmmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ymr020w_4_result_2,trial_on_minimal_globalmaxod_ymr020w_4_result_2_proc).
procedure(trial_on_minimal_globalmaxod_ymr020w_4_result_2_proc).
has_representation(trial_on_minimal_globalmaxod_ymr020w_4_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_ymr020w_4_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_globalmaxod_ymr020w,trial_on_minimal_globalmaxod_ymr020w_results).
result(trial_on_minimal_globalmaxod_ymr020w_results).
has_part(trial_on_minimal_globalmaxod_ymr020w_results,trial_on_minimal_globalmaxod_ymr020w_results_1).
has_representation(trial_on_minimal_globalmaxod_ymr020w_results_1,'median of knockout medians missing ymr020w').
text_representation('median of knockout medians missing ymr020w').
has_proposition(trial_on_minimal_globalmaxod_ymr020w_results_1,trial_on_minimal_globalmaxod_ymr020w_results_1_proc).
procedure(trial_on_minimal_globalmaxod_ymr020w_results_1_proc).
has_proposition(trial_on_minimal_globalmaxod_ymr020w_results_1_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_minimal_globalmaxod_ymr020w_results,trial_on_minimal_globalmaxod_ymr020w_results_2).
has_representation(trial_on_minimal_globalmaxod_ymr020w_results_2,'median of wild type medians').
text_representation('median of wild type medians').
has_proposition(trial_on_minimal_globalmaxod_ymr020w_results_2,trial_on_minimal_globalmaxod_ymr020w_results_2_proc).
procedure(trial_on_minimal_globalmaxod_ymr020w_results_2_proc).
has_proposition(trial_on_minimal_globalmaxod_ymr020w_results_2_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_minimal_globalmaxod_ymr020w_results,trial_on_minimal_globalmaxod_ymr020w_results_3).
has_representation(trial_on_minimal_globalmaxod_ymr020w_results_3,'difference between trial_on_minimal_globalmaxod_ymr020w_results_1 and trial_on_minimal_globalmaxod_ymr020w_results_2').
text_representation('difference between trial_on_minimal_globalmaxod_ymr020w_results_1 and trial_on_minimal_globalmaxod_ymr020w_results_2').
has_proposition(study_on_minimal_globalmaxod,study_on_minimal_globalmaxod_result).
result(study_on_minimal_globalmaxod_result).
has_part(study_on_minimal_globalmaxod_result,study_on_minimal_globalmaxod_result_1).
has_representation(study_on_minimal_globalmaxod_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_minimal_globalmaxod_result_1,'results/wm_km_global_max_od.csv').
link('results/wm_km_global_max_od.csv').
has_proposition(study_on_minimal_globalmaxod_result_1,study_on_minimal_globalmaxod_result_1_proc).
procedure(study_on_minimal_globalmaxod_result_1_proc).
has_proposition(study_on_minimal_globalmaxod_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_minimal_globalmaxod_result,study_on_minimal_globalmaxod_result_2).
has_representation(study_on_minimal_globalmaxod_result_2,'bar graph (histogram) plotting study_on_minimal_globalmaxod_result_1').
text_representation('bar graph (histogram) plotting study_on_minimal_globalmaxod_result_1').
has_proposition(study_on_minimal_globalmaxod_result_2,'results/overlayed_global_max_od0.8.tiff').
link('results/overlayed_global_max_od0.8.tiff').
has_proposition(study_on_minimal_globalmaxod_result_2,study_on_minimal_globalmaxod_result_2_proc).
procedure(study_on_minimal_globalmaxod_result_2_proc).
has_proposition(study_on_minimal_globalmaxod_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_minimal_globalmaxod,study_on_minimal_globalmaxod_conclusion).
conclusion(study_on_minimal_globalmaxod_conclusion).
has_representation(study_on_minimal_globalmaxod_conclusion,'The knockouts reach a higher global_max_od in minimal than the wild type').
text_representation('The knockouts reach a higher global_max_od in minimal than the wild type').
has_proposition(study_on_minimal_globalmaxod_conclusion,'obtain statistical mode of study_on_minimal_globalmaxod_result_1').
procedure('obtain statistical mode of study_on_minimal_globalmaxod_result_1').
text_representation('obtain statistical mode of study_on_minimal_globalmaxod_result_1').
has_part(study_on_minimal_globalmaxod,trial_on_minimal_globalmaxod_ylr017w).
trial(trial_on_minimal_globalmaxod_ylr017w).
has_agent(trial_on_minimal_globalmaxod_ylr017w,ylr017w).
strain(ylr017w).
has_proposition(trial_on_minimal_globalmaxod_ylr017w_1,trial_on_minimal_globalmaxod_ylr017w_1_design).
design(trial_on_minimal_globalmaxod_ylr017w_1_design).
has_proposition(trial_on_minimal_globalmaxod_ylr017w_1_design,trial_on_minimal_globalmaxod_ylr017w_1_factor).
factor(trial_on_minimal_globalmaxod_ylr017w_1_factor).
has_representation(trial_on_minimal_globalmaxod_ylr017w_1_factor,'presence or absence of ylr017w').
has_input(trial_on_minimal_globalmaxod_ylr017w_1,trial_on_minimal_globalmaxod_ylr017w_1_data).
data(trial_on_minimal_globalmaxod_ylr017w_1_data).
has_part(trial_on_minimal_globalmaxod_ylr017w_1_data,'48 values for global max od of knockout on minimal medium').
has_part(trial_on_minimal_globalmaxod_ylr017w_1_data,'48 values for global max od of wild type on minimal medium').
has_proposition(trial_on_minimal_globalmaxod_ylr017w_1_data,'../data/').
link('../data/').
located_in(trial_on_minimal_globalmaxod_ylr017w_1,'jan07-single_expt001-plate001').
plate('jan07-single_expt001-plate001').
has_proposition(trial_on_minimal_globalmaxod_ylr017w_1,trial_on_minimal_globalmaxod_ylr017w_1_result).
result(trial_on_minimal_globalmaxod_ylr017w_1_result).
has_part(trial_on_minimal_globalmaxod_ylr017w_1_result,trial_on_minimal_globalmaxod_ylr017w_1_result_1).
has_representation(trial_on_minimal_globalmaxod_ylr017w_1_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_globalmaxod_ylr017w_1_result_1,'results/global_max_od_growth_kmedians.txt').
link('results/global_max_od_growth_kmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ylr017w_1_result_1,trial_on_minimal_globalmaxod_ylr017w_1_result_1_proc).
procedure(trial_on_minimal_globalmaxod_ylr017w_1_result_1_proc).
has_representation(trial_on_minimal_globalmaxod_ylr017w_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_ylr017w_1_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_minimal_globalmaxod_ylr017w_1_result,trial_on_minimal_globalmaxod_ylr017w_1_result_2).
has_representation(trial_on_minimal_globalmaxod_ylr017w_1_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_globalmaxod_ylr017w_1_result_2,'results/global_max_od_growth_wmmedians.txt').
link('results/global_max_od_growth_wmmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ylr017w_1_result_2,trial_on_minimal_globalmaxod_ylr017w_1_result_2_proc).
procedure(trial_on_minimal_globalmaxod_ylr017w_1_result_2_proc).
has_representation(trial_on_minimal_globalmaxod_ylr017w_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_ylr017w_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_globalmaxod_ylr017w_2,trial_on_minimal_globalmaxod_ylr017w_2_design).
design(trial_on_minimal_globalmaxod_ylr017w_2_design).
has_proposition(trial_on_minimal_globalmaxod_ylr017w_2_design,trial_on_minimal_globalmaxod_ylr017w_2_factor).
factor(trial_on_minimal_globalmaxod_ylr017w_2_factor).
has_representation(trial_on_minimal_globalmaxod_ylr017w_2_factor,'presence or absence of ylr017w').
has_input(trial_on_minimal_globalmaxod_ylr017w_2,trial_on_minimal_globalmaxod_ylr017w_2_data).
data(trial_on_minimal_globalmaxod_ylr017w_2_data).
has_part(trial_on_minimal_globalmaxod_ylr017w_2_data,'48 values for global max od of knockout on minimal medium').
has_part(trial_on_minimal_globalmaxod_ylr017w_2_data,'48 values for global max od of wild type on minimal medium').
has_proposition(trial_on_minimal_globalmaxod_ylr017w_2_data,'../data/').
link('../data/').
located_in(trial_on_minimal_globalmaxod_ylr017w_2,'jan07-single2_expt001-plate001').
plate('jan07-single2_expt001-plate001').
has_proposition(trial_on_minimal_globalmaxod_ylr017w_2,trial_on_minimal_globalmaxod_ylr017w_2_result).
result(trial_on_minimal_globalmaxod_ylr017w_2_result).
has_part(trial_on_minimal_globalmaxod_ylr017w_2_result,trial_on_minimal_globalmaxod_ylr017w_2_result_1).
has_representation(trial_on_minimal_globalmaxod_ylr017w_2_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_globalmaxod_ylr017w_2_result_1,'results/global_max_od_growth_kmedians.txt').
link('results/global_max_od_growth_kmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ylr017w_2_result_1,trial_on_minimal_globalmaxod_ylr017w_2_result_1_proc).
procedure(trial_on_minimal_globalmaxod_ylr017w_2_result_1_proc).
has_representation(trial_on_minimal_globalmaxod_ylr017w_2_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_ylr017w_2_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_minimal_globalmaxod_ylr017w_2_result,trial_on_minimal_globalmaxod_ylr017w_2_result_2).
has_representation(trial_on_minimal_globalmaxod_ylr017w_2_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_globalmaxod_ylr017w_2_result_2,'results/global_max_od_growth_wmmedians.txt').
link('results/global_max_od_growth_wmmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ylr017w_2_result_2,trial_on_minimal_globalmaxod_ylr017w_2_result_2_proc).
procedure(trial_on_minimal_globalmaxod_ylr017w_2_result_2_proc).
has_representation(trial_on_minimal_globalmaxod_ylr017w_2_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_ylr017w_2_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_globalmaxod_ylr017w_3,trial_on_minimal_globalmaxod_ylr017w_3_design).
design(trial_on_minimal_globalmaxod_ylr017w_3_design).
has_proposition(trial_on_minimal_globalmaxod_ylr017w_3_design,trial_on_minimal_globalmaxod_ylr017w_3_factor).
factor(trial_on_minimal_globalmaxod_ylr017w_3_factor).
has_representation(trial_on_minimal_globalmaxod_ylr017w_3_factor,'presence or absence of ylr017w').
has_input(trial_on_minimal_globalmaxod_ylr017w_3,trial_on_minimal_globalmaxod_ylr017w_3_data).
data(trial_on_minimal_globalmaxod_ylr017w_3_data).
has_part(trial_on_minimal_globalmaxod_ylr017w_3_data,'48 values for global max od of knockout on minimal medium').
has_part(trial_on_minimal_globalmaxod_ylr017w_3_data,'48 values for global max od of wild type on minimal medium').
has_proposition(trial_on_minimal_globalmaxod_ylr017w_3_data,'../data/').
link('../data/').
located_in(trial_on_minimal_globalmaxod_ylr017w_3,'jan07-trial1_expt001-plate004').
plate('jan07-trial1_expt001-plate004').
has_proposition(trial_on_minimal_globalmaxod_ylr017w_3,trial_on_minimal_globalmaxod_ylr017w_3_result).
result(trial_on_minimal_globalmaxod_ylr017w_3_result).
has_part(trial_on_minimal_globalmaxod_ylr017w_3_result,trial_on_minimal_globalmaxod_ylr017w_3_result_1).
has_representation(trial_on_minimal_globalmaxod_ylr017w_3_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_globalmaxod_ylr017w_3_result_1,'results/global_max_od_growth_kmedians.txt').
link('results/global_max_od_growth_kmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ylr017w_3_result_1,trial_on_minimal_globalmaxod_ylr017w_3_result_1_proc).
procedure(trial_on_minimal_globalmaxod_ylr017w_3_result_1_proc).
has_representation(trial_on_minimal_globalmaxod_ylr017w_3_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_ylr017w_3_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_minimal_globalmaxod_ylr017w_3_result,trial_on_minimal_globalmaxod_ylr017w_3_result_2).
has_representation(trial_on_minimal_globalmaxod_ylr017w_3_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_globalmaxod_ylr017w_3_result_2,'results/global_max_od_growth_wmmedians.txt').
link('results/global_max_od_growth_wmmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ylr017w_3_result_2,trial_on_minimal_globalmaxod_ylr017w_3_result_2_proc).
procedure(trial_on_minimal_globalmaxod_ylr017w_3_result_2_proc).
has_representation(trial_on_minimal_globalmaxod_ylr017w_3_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_ylr017w_3_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_globalmaxod_ylr017w_4,trial_on_minimal_globalmaxod_ylr017w_4_design).
design(trial_on_minimal_globalmaxod_ylr017w_4_design).
has_proposition(trial_on_minimal_globalmaxod_ylr017w_4_design,trial_on_minimal_globalmaxod_ylr017w_4_factor).
factor(trial_on_minimal_globalmaxod_ylr017w_4_factor).
has_representation(trial_on_minimal_globalmaxod_ylr017w_4_factor,'presence or absence of ylr017w').
has_input(trial_on_minimal_globalmaxod_ylr017w_4,trial_on_minimal_globalmaxod_ylr017w_4_data).
data(trial_on_minimal_globalmaxod_ylr017w_4_data).
has_part(trial_on_minimal_globalmaxod_ylr017w_4_data,'48 values for global max od of knockout on minimal medium').
has_part(trial_on_minimal_globalmaxod_ylr017w_4_data,'48 values for global max od of wild type on minimal medium').
has_proposition(trial_on_minimal_globalmaxod_ylr017w_4_data,'../data/').
link('../data/').
located_in(trial_on_minimal_globalmaxod_ylr017w_4,'jan07-trial1_expt001-plate006').
plate('jan07-trial1_expt001-plate006').
has_proposition(trial_on_minimal_globalmaxod_ylr017w_4,trial_on_minimal_globalmaxod_ylr017w_4_result).
result(trial_on_minimal_globalmaxod_ylr017w_4_result).
has_part(trial_on_minimal_globalmaxod_ylr017w_4_result,trial_on_minimal_globalmaxod_ylr017w_4_result_1).
has_representation(trial_on_minimal_globalmaxod_ylr017w_4_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_globalmaxod_ylr017w_4_result_1,'results/global_max_od_growth_kmedians.txt').
link('results/global_max_od_growth_kmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ylr017w_4_result_1,trial_on_minimal_globalmaxod_ylr017w_4_result_1_proc).
procedure(trial_on_minimal_globalmaxod_ylr017w_4_result_1_proc).
has_representation(trial_on_minimal_globalmaxod_ylr017w_4_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_ylr017w_4_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_minimal_globalmaxod_ylr017w_4_result,trial_on_minimal_globalmaxod_ylr017w_4_result_2).
has_representation(trial_on_minimal_globalmaxod_ylr017w_4_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
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link('results/global_max_od_growth_wmmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ylr017w_4_result_2,trial_on_minimal_globalmaxod_ylr017w_4_result_2_proc).
procedure(trial_on_minimal_globalmaxod_ylr017w_4_result_2_proc).
has_representation(trial_on_minimal_globalmaxod_ylr017w_4_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
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link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_globalmaxod_ylr017w_5,trial_on_minimal_globalmaxod_ylr017w_5_design).
design(trial_on_minimal_globalmaxod_ylr017w_5_design).
has_proposition(trial_on_minimal_globalmaxod_ylr017w_5_design,trial_on_minimal_globalmaxod_ylr017w_5_factor).
factor(trial_on_minimal_globalmaxod_ylr017w_5_factor).
has_representation(trial_on_minimal_globalmaxod_ylr017w_5_factor,'presence or absence of ylr017w').
has_input(trial_on_minimal_globalmaxod_ylr017w_5,trial_on_minimal_globalmaxod_ylr017w_5_data).
data(trial_on_minimal_globalmaxod_ylr017w_5_data).
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has_part(trial_on_minimal_globalmaxod_ylr017w_5_data,'48 values for global max od of wild type on minimal medium').
has_proposition(trial_on_minimal_globalmaxod_ylr017w_5_data,'../data/').
link('../data/').
located_in(trial_on_minimal_globalmaxod_ylr017w_5,'jan07-trial1_expt001-plate007').
plate('jan07-trial1_expt001-plate007').
has_proposition(trial_on_minimal_globalmaxod_ylr017w_5,trial_on_minimal_globalmaxod_ylr017w_5_result).
result(trial_on_minimal_globalmaxod_ylr017w_5_result).
has_part(trial_on_minimal_globalmaxod_ylr017w_5_result,trial_on_minimal_globalmaxod_ylr017w_5_result_1).
has_representation(trial_on_minimal_globalmaxod_ylr017w_5_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
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link('results/global_max_od_growth_kmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ylr017w_5_result_1,trial_on_minimal_globalmaxod_ylr017w_5_result_1_proc).
procedure(trial_on_minimal_globalmaxod_ylr017w_5_result_1_proc).
has_representation(trial_on_minimal_globalmaxod_ylr017w_5_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_ylr017w_5_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_minimal_globalmaxod_ylr017w_5_result,trial_on_minimal_globalmaxod_ylr017w_5_result_2).
has_representation(trial_on_minimal_globalmaxod_ylr017w_5_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
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link('results/global_max_od_growth_wmmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ylr017w_5_result_2,trial_on_minimal_globalmaxod_ylr017w_5_result_2_proc).
procedure(trial_on_minimal_globalmaxod_ylr017w_5_result_2_proc).
has_representation(trial_on_minimal_globalmaxod_ylr017w_5_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_ylr017w_5_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_globalmaxod_ylr017w_6,trial_on_minimal_globalmaxod_ylr017w_6_design).
design(trial_on_minimal_globalmaxod_ylr017w_6_design).
has_proposition(trial_on_minimal_globalmaxod_ylr017w_6_design,trial_on_minimal_globalmaxod_ylr017w_6_factor).
factor(trial_on_minimal_globalmaxod_ylr017w_6_factor).
has_representation(trial_on_minimal_globalmaxod_ylr017w_6_factor,'presence or absence of ylr017w').
has_input(trial_on_minimal_globalmaxod_ylr017w_6,trial_on_minimal_globalmaxod_ylr017w_6_data).
data(trial_on_minimal_globalmaxod_ylr017w_6_data).
has_part(trial_on_minimal_globalmaxod_ylr017w_6_data,'48 values for global max od of knockout on minimal medium').
has_part(trial_on_minimal_globalmaxod_ylr017w_6_data,'48 values for global max od of wild type on minimal medium').
has_proposition(trial_on_minimal_globalmaxod_ylr017w_6_data,'../data/').
link('../data/').
located_in(trial_on_minimal_globalmaxod_ylr017w_6,'jan07-trial1_expt001-plate011').
plate('jan07-trial1_expt001-plate011').
has_proposition(trial_on_minimal_globalmaxod_ylr017w_6,trial_on_minimal_globalmaxod_ylr017w_6_result).
result(trial_on_minimal_globalmaxod_ylr017w_6_result).
has_part(trial_on_minimal_globalmaxod_ylr017w_6_result,trial_on_minimal_globalmaxod_ylr017w_6_result_1).
has_representation(trial_on_minimal_globalmaxod_ylr017w_6_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_globalmaxod_ylr017w_6_result_1,'results/global_max_od_growth_kmedians.txt').
link('results/global_max_od_growth_kmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ylr017w_6_result_1,trial_on_minimal_globalmaxod_ylr017w_6_result_1_proc).
procedure(trial_on_minimal_globalmaxod_ylr017w_6_result_1_proc).
has_representation(trial_on_minimal_globalmaxod_ylr017w_6_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_ylr017w_6_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_minimal_globalmaxod_ylr017w_6_result,trial_on_minimal_globalmaxod_ylr017w_6_result_2).
has_representation(trial_on_minimal_globalmaxod_ylr017w_6_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
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link('results/global_max_od_growth_wmmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ylr017w_6_result_2,trial_on_minimal_globalmaxod_ylr017w_6_result_2_proc).
procedure(trial_on_minimal_globalmaxod_ylr017w_6_result_2_proc).
has_representation(trial_on_minimal_globalmaxod_ylr017w_6_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_ylr017w_6_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_globalmaxod_ylr017w_7,trial_on_minimal_globalmaxod_ylr017w_7_design).
design(trial_on_minimal_globalmaxod_ylr017w_7_design).
has_proposition(trial_on_minimal_globalmaxod_ylr017w_7_design,trial_on_minimal_globalmaxod_ylr017w_7_factor).
factor(trial_on_minimal_globalmaxod_ylr017w_7_factor).
has_representation(trial_on_minimal_globalmaxod_ylr017w_7_factor,'presence or absence of ylr017w').
has_input(trial_on_minimal_globalmaxod_ylr017w_7,trial_on_minimal_globalmaxod_ylr017w_7_data).
data(trial_on_minimal_globalmaxod_ylr017w_7_data).
has_part(trial_on_minimal_globalmaxod_ylr017w_7_data,'48 values for global max od of knockout on minimal medium').
has_part(trial_on_minimal_globalmaxod_ylr017w_7_data,'48 values for global max od of wild type on minimal medium').
has_proposition(trial_on_minimal_globalmaxod_ylr017w_7_data,'../data/').
link('../data/').
located_in(trial_on_minimal_globalmaxod_ylr017w_7,'mar07-trial1_expt001-plate003').
plate('mar07-trial1_expt001-plate003').
has_proposition(trial_on_minimal_globalmaxod_ylr017w_7,trial_on_minimal_globalmaxod_ylr017w_7_result).
result(trial_on_minimal_globalmaxod_ylr017w_7_result).
has_part(trial_on_minimal_globalmaxod_ylr017w_7_result,trial_on_minimal_globalmaxod_ylr017w_7_result_1).
has_representation(trial_on_minimal_globalmaxod_ylr017w_7_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_globalmaxod_ylr017w_7_result_1,'results/global_max_od_growth_kmedians.txt').
link('results/global_max_od_growth_kmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ylr017w_7_result_1,trial_on_minimal_globalmaxod_ylr017w_7_result_1_proc).
procedure(trial_on_minimal_globalmaxod_ylr017w_7_result_1_proc).
has_representation(trial_on_minimal_globalmaxod_ylr017w_7_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_ylr017w_7_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_minimal_globalmaxod_ylr017w_7_result,trial_on_minimal_globalmaxod_ylr017w_7_result_2).
has_representation(trial_on_minimal_globalmaxod_ylr017w_7_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_globalmaxod_ylr017w_7_result_2,'results/global_max_od_growth_wmmedians.txt').
link('results/global_max_od_growth_wmmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ylr017w_7_result_2,trial_on_minimal_globalmaxod_ylr017w_7_result_2_proc).
procedure(trial_on_minimal_globalmaxod_ylr017w_7_result_2_proc).
has_representation(trial_on_minimal_globalmaxod_ylr017w_7_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_ylr017w_7_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_globalmaxod_ylr017w_8,trial_on_minimal_globalmaxod_ylr017w_8_design).
design(trial_on_minimal_globalmaxod_ylr017w_8_design).
has_proposition(trial_on_minimal_globalmaxod_ylr017w_8_design,trial_on_minimal_globalmaxod_ylr017w_8_factor).
factor(trial_on_minimal_globalmaxod_ylr017w_8_factor).
has_representation(trial_on_minimal_globalmaxod_ylr017w_8_factor,'presence or absence of ylr017w').
has_input(trial_on_minimal_globalmaxod_ylr017w_8,trial_on_minimal_globalmaxod_ylr017w_8_data).
data(trial_on_minimal_globalmaxod_ylr017w_8_data).
has_part(trial_on_minimal_globalmaxod_ylr017w_8_data,'48 values for global max od of knockout on minimal medium').
has_part(trial_on_minimal_globalmaxod_ylr017w_8_data,'48 values for global max od of wild type on minimal medium').
has_proposition(trial_on_minimal_globalmaxod_ylr017w_8_data,'../data/').
link('../data/').
located_in(trial_on_minimal_globalmaxod_ylr017w_8,'mar07-trial1_expt001-plate004').
plate('mar07-trial1_expt001-plate004').
has_proposition(trial_on_minimal_globalmaxod_ylr017w_8,trial_on_minimal_globalmaxod_ylr017w_8_result).
result(trial_on_minimal_globalmaxod_ylr017w_8_result).
has_part(trial_on_minimal_globalmaxod_ylr017w_8_result,trial_on_minimal_globalmaxod_ylr017w_8_result_1).
has_representation(trial_on_minimal_globalmaxod_ylr017w_8_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_globalmaxod_ylr017w_8_result_1,'results/global_max_od_growth_kmedians.txt').
link('results/global_max_od_growth_kmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ylr017w_8_result_1,trial_on_minimal_globalmaxod_ylr017w_8_result_1_proc).
procedure(trial_on_minimal_globalmaxod_ylr017w_8_result_1_proc).
has_representation(trial_on_minimal_globalmaxod_ylr017w_8_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_ylr017w_8_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_minimal_globalmaxod_ylr017w_8_result,trial_on_minimal_globalmaxod_ylr017w_8_result_2).
has_representation(trial_on_minimal_globalmaxod_ylr017w_8_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_globalmaxod_ylr017w_8_result_2,'results/global_max_od_growth_wmmedians.txt').
link('results/global_max_od_growth_wmmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ylr017w_8_result_2,trial_on_minimal_globalmaxod_ylr017w_8_result_2_proc).
procedure(trial_on_minimal_globalmaxod_ylr017w_8_result_2_proc).
has_representation(trial_on_minimal_globalmaxod_ylr017w_8_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_ylr017w_8_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_globalmaxod_ylr017w,trial_on_minimal_globalmaxod_ylr017w_results).
result(trial_on_minimal_globalmaxod_ylr017w_results).
has_part(trial_on_minimal_globalmaxod_ylr017w_results,trial_on_minimal_globalmaxod_ylr017w_results_1).
has_representation(trial_on_minimal_globalmaxod_ylr017w_results_1,'median of knockout medians missing ylr017w').
text_representation('median of knockout medians missing ylr017w').
has_proposition(trial_on_minimal_globalmaxod_ylr017w_results_1,trial_on_minimal_globalmaxod_ylr017w_results_1_proc).
procedure(trial_on_minimal_globalmaxod_ylr017w_results_1_proc).
has_proposition(trial_on_minimal_globalmaxod_ylr017w_results_1_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_minimal_globalmaxod_ylr017w_results,trial_on_minimal_globalmaxod_ylr017w_results_2).
has_representation(trial_on_minimal_globalmaxod_ylr017w_results_2,'median of wild type medians').
text_representation('median of wild type medians').
has_proposition(trial_on_minimal_globalmaxod_ylr017w_results_2,trial_on_minimal_globalmaxod_ylr017w_results_2_proc).
procedure(trial_on_minimal_globalmaxod_ylr017w_results_2_proc).
has_proposition(trial_on_minimal_globalmaxod_ylr017w_results_2_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_minimal_globalmaxod_ylr017w_results,trial_on_minimal_globalmaxod_ylr017w_results_3).
has_representation(trial_on_minimal_globalmaxod_ylr017w_results_3,'difference between trial_on_minimal_globalmaxod_ylr017w_results_1 and trial_on_minimal_globalmaxod_ylr017w_results_2').
text_representation('difference between trial_on_minimal_globalmaxod_ylr017w_results_1 and trial_on_minimal_globalmaxod_ylr017w_results_2').
has_proposition(study_on_minimal_globalmaxod,study_on_minimal_globalmaxod_result).
result(study_on_minimal_globalmaxod_result).
has_part(study_on_minimal_globalmaxod_result,study_on_minimal_globalmaxod_result_1).
has_representation(study_on_minimal_globalmaxod_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_minimal_globalmaxod_result_1,'results/wm_km_global_max_od.csv').
link('results/wm_km_global_max_od.csv').
has_proposition(study_on_minimal_globalmaxod_result_1,study_on_minimal_globalmaxod_result_1_proc).
procedure(study_on_minimal_globalmaxod_result_1_proc).
has_proposition(study_on_minimal_globalmaxod_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_minimal_globalmaxod_result,study_on_minimal_globalmaxod_result_2).
has_representation(study_on_minimal_globalmaxod_result_2,'bar graph (histogram) plotting study_on_minimal_globalmaxod_result_1').
text_representation('bar graph (histogram) plotting study_on_minimal_globalmaxod_result_1').
has_proposition(study_on_minimal_globalmaxod_result_2,'results/overlayed_global_max_od0.8.tiff').
link('results/overlayed_global_max_od0.8.tiff').
has_proposition(study_on_minimal_globalmaxod_result_2,study_on_minimal_globalmaxod_result_2_proc).
procedure(study_on_minimal_globalmaxod_result_2_proc).
has_proposition(study_on_minimal_globalmaxod_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_minimal_globalmaxod,study_on_minimal_globalmaxod_conclusion).
conclusion(study_on_minimal_globalmaxod_conclusion).
has_representation(study_on_minimal_globalmaxod_conclusion,'The knockouts reach a higher global_max_od in minimal than the wild type').
text_representation('The knockouts reach a higher global_max_od in minimal than the wild type').
has_proposition(study_on_minimal_globalmaxod_conclusion,'obtain statistical mode of study_on_minimal_globalmaxod_result_1').
procedure('obtain statistical mode of study_on_minimal_globalmaxod_result_1').
text_representation('obtain statistical mode of study_on_minimal_globalmaxod_result_1').
has_part(study_on_minimal_globalmaxod,trial_on_minimal_globalmaxod_rsyd000004).
trial(trial_on_minimal_globalmaxod_rsyd000004).
has_agent(trial_on_minimal_globalmaxod_rsyd000004,rsyd000004).
strain(rsyd000004).
has_proposition(trial_on_minimal_globalmaxod_rsyd000004_1,trial_on_minimal_globalmaxod_rsyd000004_1_design).
design(trial_on_minimal_globalmaxod_rsyd000004_1_design).
has_proposition(trial_on_minimal_globalmaxod_rsyd000004_1_design,trial_on_minimal_globalmaxod_rsyd000004_1_factor).
factor(trial_on_minimal_globalmaxod_rsyd000004_1_factor).
has_representation(trial_on_minimal_globalmaxod_rsyd000004_1_factor,'presence or absence of rsyd000004').
has_input(trial_on_minimal_globalmaxod_rsyd000004_1,trial_on_minimal_globalmaxod_rsyd000004_1_data).
data(trial_on_minimal_globalmaxod_rsyd000004_1_data).
has_part(trial_on_minimal_globalmaxod_rsyd000004_1_data,'48 values for global max od of knockout on minimal medium').
has_part(trial_on_minimal_globalmaxod_rsyd000004_1_data,'48 values for global max od of wild type on minimal medium').
has_proposition(trial_on_minimal_globalmaxod_rsyd000004_1_data,'../data/').
link('../data/').
located_in(trial_on_minimal_globalmaxod_rsyd000004_1,'trial-130407_expt001-plate001').
plate('trial-130407_expt001-plate001').
has_proposition(trial_on_minimal_globalmaxod_rsyd000004_1,trial_on_minimal_globalmaxod_rsyd000004_1_result).
result(trial_on_minimal_globalmaxod_rsyd000004_1_result).
has_part(trial_on_minimal_globalmaxod_rsyd000004_1_result,trial_on_minimal_globalmaxod_rsyd000004_1_result_1).
has_representation(trial_on_minimal_globalmaxod_rsyd000004_1_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_globalmaxod_rsyd000004_1_result_1,'results/global_max_od_growth_kmedians.txt').
link('results/global_max_od_growth_kmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_rsyd000004_1_result_1,trial_on_minimal_globalmaxod_rsyd000004_1_result_1_proc).
procedure(trial_on_minimal_globalmaxod_rsyd000004_1_result_1_proc).
has_representation(trial_on_minimal_globalmaxod_rsyd000004_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_rsyd000004_1_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_minimal_globalmaxod_rsyd000004_1_result,trial_on_minimal_globalmaxod_rsyd000004_1_result_2).
has_representation(trial_on_minimal_globalmaxod_rsyd000004_1_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_globalmaxod_rsyd000004_1_result_2,'results/global_max_od_growth_wmmedians.txt').
link('results/global_max_od_growth_wmmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_rsyd000004_1_result_2,trial_on_minimal_globalmaxod_rsyd000004_1_result_2_proc).
procedure(trial_on_minimal_globalmaxod_rsyd000004_1_result_2_proc).
has_representation(trial_on_minimal_globalmaxod_rsyd000004_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_rsyd000004_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_globalmaxod_rsyd000004_2,trial_on_minimal_globalmaxod_rsyd000004_2_design).
design(trial_on_minimal_globalmaxod_rsyd000004_2_design).
has_proposition(trial_on_minimal_globalmaxod_rsyd000004_2_design,trial_on_minimal_globalmaxod_rsyd000004_2_factor).
factor(trial_on_minimal_globalmaxod_rsyd000004_2_factor).
has_representation(trial_on_minimal_globalmaxod_rsyd000004_2_factor,'presence or absence of rsyd000004').
has_input(trial_on_minimal_globalmaxod_rsyd000004_2,trial_on_minimal_globalmaxod_rsyd000004_2_data).
data(trial_on_minimal_globalmaxod_rsyd000004_2_data).
has_part(trial_on_minimal_globalmaxod_rsyd000004_2_data,'48 values for global max od of knockout on minimal medium').
has_part(trial_on_minimal_globalmaxod_rsyd000004_2_data,'48 values for global max od of wild type on minimal medium').
has_proposition(trial_on_minimal_globalmaxod_rsyd000004_2_data,'../data/').
link('../data/').
located_in(trial_on_minimal_globalmaxod_rsyd000004_2,'trial-130407_expt001-plate002').
plate('trial-130407_expt001-plate002').
has_proposition(trial_on_minimal_globalmaxod_rsyd000004_2,trial_on_minimal_globalmaxod_rsyd000004_2_result).
result(trial_on_minimal_globalmaxod_rsyd000004_2_result).
has_part(trial_on_minimal_globalmaxod_rsyd000004_2_result,trial_on_minimal_globalmaxod_rsyd000004_2_result_1).
has_representation(trial_on_minimal_globalmaxod_rsyd000004_2_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_globalmaxod_rsyd000004_2_result_1,'results/global_max_od_growth_kmedians.txt').
link('results/global_max_od_growth_kmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_rsyd000004_2_result_1,trial_on_minimal_globalmaxod_rsyd000004_2_result_1_proc).
procedure(trial_on_minimal_globalmaxod_rsyd000004_2_result_1_proc).
has_representation(trial_on_minimal_globalmaxod_rsyd000004_2_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_rsyd000004_2_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_minimal_globalmaxod_rsyd000004_2_result,trial_on_minimal_globalmaxod_rsyd000004_2_result_2).
has_representation(trial_on_minimal_globalmaxod_rsyd000004_2_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_globalmaxod_rsyd000004_2_result_2,'results/global_max_od_growth_wmmedians.txt').
link('results/global_max_od_growth_wmmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_rsyd000004_2_result_2,trial_on_minimal_globalmaxod_rsyd000004_2_result_2_proc).
procedure(trial_on_minimal_globalmaxod_rsyd000004_2_result_2_proc).
has_representation(trial_on_minimal_globalmaxod_rsyd000004_2_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_rsyd000004_2_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_globalmaxod_rsyd000004_3,trial_on_minimal_globalmaxod_rsyd000004_3_design).
design(trial_on_minimal_globalmaxod_rsyd000004_3_design).
has_proposition(trial_on_minimal_globalmaxod_rsyd000004_3_design,trial_on_minimal_globalmaxod_rsyd000004_3_factor).
factor(trial_on_minimal_globalmaxod_rsyd000004_3_factor).
has_representation(trial_on_minimal_globalmaxod_rsyd000004_3_factor,'presence or absence of rsyd000004').
has_input(trial_on_minimal_globalmaxod_rsyd000004_3,trial_on_minimal_globalmaxod_rsyd000004_3_data).
data(trial_on_minimal_globalmaxod_rsyd000004_3_data).
has_part(trial_on_minimal_globalmaxod_rsyd000004_3_data,'48 values for global max od of knockout on minimal medium').
has_part(trial_on_minimal_globalmaxod_rsyd000004_3_data,'48 values for global max od of wild type on minimal medium').
has_proposition(trial_on_minimal_globalmaxod_rsyd000004_3_data,'../data/').
link('../data/').
located_in(trial_on_minimal_globalmaxod_rsyd000004_3,'trial-130407_expt001-plate003').
plate('trial-130407_expt001-plate003').
has_proposition(trial_on_minimal_globalmaxod_rsyd000004_3,trial_on_minimal_globalmaxod_rsyd000004_3_result).
result(trial_on_minimal_globalmaxod_rsyd000004_3_result).
has_part(trial_on_minimal_globalmaxod_rsyd000004_3_result,trial_on_minimal_globalmaxod_rsyd000004_3_result_1).
has_representation(trial_on_minimal_globalmaxod_rsyd000004_3_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_globalmaxod_rsyd000004_3_result_1,'results/global_max_od_growth_kmedians.txt').
link('results/global_max_od_growth_kmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_rsyd000004_3_result_1,trial_on_minimal_globalmaxod_rsyd000004_3_result_1_proc).
procedure(trial_on_minimal_globalmaxod_rsyd000004_3_result_1_proc).
has_representation(trial_on_minimal_globalmaxod_rsyd000004_3_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_rsyd000004_3_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_minimal_globalmaxod_rsyd000004_3_result,trial_on_minimal_globalmaxod_rsyd000004_3_result_2).
has_representation(trial_on_minimal_globalmaxod_rsyd000004_3_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_globalmaxod_rsyd000004_3_result_2,'results/global_max_od_growth_wmmedians.txt').
link('results/global_max_od_growth_wmmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_rsyd000004_3_result_2,trial_on_minimal_globalmaxod_rsyd000004_3_result_2_proc).
procedure(trial_on_minimal_globalmaxod_rsyd000004_3_result_2_proc).
has_representation(trial_on_minimal_globalmaxod_rsyd000004_3_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_rsyd000004_3_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_globalmaxod_rsyd000004,trial_on_minimal_globalmaxod_rsyd000004_results).
result(trial_on_minimal_globalmaxod_rsyd000004_results).
has_part(trial_on_minimal_globalmaxod_rsyd000004_results,trial_on_minimal_globalmaxod_rsyd000004_results_1).
has_representation(trial_on_minimal_globalmaxod_rsyd000004_results_1,'median of knockout medians missing rsyd000004').
text_representation('median of knockout medians missing rsyd000004').
has_proposition(trial_on_minimal_globalmaxod_rsyd000004_results_1,trial_on_minimal_globalmaxod_rsyd000004_results_1_proc).
procedure(trial_on_minimal_globalmaxod_rsyd000004_results_1_proc).
has_proposition(trial_on_minimal_globalmaxod_rsyd000004_results_1_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_minimal_globalmaxod_rsyd000004_results,trial_on_minimal_globalmaxod_rsyd000004_results_2).
has_representation(trial_on_minimal_globalmaxod_rsyd000004_results_2,'median of wild type medians').
text_representation('median of wild type medians').
has_proposition(trial_on_minimal_globalmaxod_rsyd000004_results_2,trial_on_minimal_globalmaxod_rsyd000004_results_2_proc).
procedure(trial_on_minimal_globalmaxod_rsyd000004_results_2_proc).
has_proposition(trial_on_minimal_globalmaxod_rsyd000004_results_2_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_minimal_globalmaxod_rsyd000004_results,trial_on_minimal_globalmaxod_rsyd000004_results_3).
has_representation(trial_on_minimal_globalmaxod_rsyd000004_results_3,'difference between trial_on_minimal_globalmaxod_rsyd000004_results_1 and trial_on_minimal_globalmaxod_rsyd000004_results_2').
text_representation('difference between trial_on_minimal_globalmaxod_rsyd000004_results_1 and trial_on_minimal_globalmaxod_rsyd000004_results_2').
has_proposition(study_on_minimal_globalmaxod,study_on_minimal_globalmaxod_result).
result(study_on_minimal_globalmaxod_result).
has_part(study_on_minimal_globalmaxod_result,study_on_minimal_globalmaxod_result_1).
has_representation(study_on_minimal_globalmaxod_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_minimal_globalmaxod_result_1,'results/wm_km_global_max_od.csv').
link('results/wm_km_global_max_od.csv').
has_proposition(study_on_minimal_globalmaxod_result_1,study_on_minimal_globalmaxod_result_1_proc).
procedure(study_on_minimal_globalmaxod_result_1_proc).
has_proposition(study_on_minimal_globalmaxod_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_minimal_globalmaxod_result,study_on_minimal_globalmaxod_result_2).
has_representation(study_on_minimal_globalmaxod_result_2,'bar graph (histogram) plotting study_on_minimal_globalmaxod_result_1').
text_representation('bar graph (histogram) plotting study_on_minimal_globalmaxod_result_1').
has_proposition(study_on_minimal_globalmaxod_result_2,'results/overlayed_global_max_od0.8.tiff').
link('results/overlayed_global_max_od0.8.tiff').
has_proposition(study_on_minimal_globalmaxod_result_2,study_on_minimal_globalmaxod_result_2_proc).
procedure(study_on_minimal_globalmaxod_result_2_proc).
has_proposition(study_on_minimal_globalmaxod_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_minimal_globalmaxod,study_on_minimal_globalmaxod_conclusion).
conclusion(study_on_minimal_globalmaxod_conclusion).
has_representation(study_on_minimal_globalmaxod_conclusion,'The knockouts reach a higher global_max_od in minimal than the wild type').
text_representation('The knockouts reach a higher global_max_od in minimal than the wild type').
has_proposition(study_on_minimal_globalmaxod_conclusion,'obtain statistical mode of study_on_minimal_globalmaxod_result_1').
procedure('obtain statistical mode of study_on_minimal_globalmaxod_result_1').
text_representation('obtain statistical mode of study_on_minimal_globalmaxod_result_1').
has_part(study_on_minimal_globalmaxod,trial_on_minimal_globalmaxod_rsyd000005).
trial(trial_on_minimal_globalmaxod_rsyd000005).
has_agent(trial_on_minimal_globalmaxod_rsyd000005,rsyd000005).
strain(rsyd000005).
has_proposition(trial_on_minimal_globalmaxod_rsyd000005_1,trial_on_minimal_globalmaxod_rsyd000005_1_design).
design(trial_on_minimal_globalmaxod_rsyd000005_1_design).
has_proposition(trial_on_minimal_globalmaxod_rsyd000005_1_design,trial_on_minimal_globalmaxod_rsyd000005_1_factor).
factor(trial_on_minimal_globalmaxod_rsyd000005_1_factor).
has_representation(trial_on_minimal_globalmaxod_rsyd000005_1_factor,'presence or absence of rsyd000005').
has_input(trial_on_minimal_globalmaxod_rsyd000005_1,trial_on_minimal_globalmaxod_rsyd000005_1_data).
data(trial_on_minimal_globalmaxod_rsyd000005_1_data).
has_part(trial_on_minimal_globalmaxod_rsyd000005_1_data,'48 values for global max od of knockout on minimal medium').
has_part(trial_on_minimal_globalmaxod_rsyd000005_1_data,'48 values for global max od of wild type on minimal medium').
has_proposition(trial_on_minimal_globalmaxod_rsyd000005_1_data,'../data/').
link('../data/').
located_in(trial_on_minimal_globalmaxod_rsyd000005_1,'trial-130407_expt001-plate004').
plate('trial-130407_expt001-plate004').
has_proposition(trial_on_minimal_globalmaxod_rsyd000005_1,trial_on_minimal_globalmaxod_rsyd000005_1_result).
result(trial_on_minimal_globalmaxod_rsyd000005_1_result).
has_part(trial_on_minimal_globalmaxod_rsyd000005_1_result,trial_on_minimal_globalmaxod_rsyd000005_1_result_1).
has_representation(trial_on_minimal_globalmaxod_rsyd000005_1_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_globalmaxod_rsyd000005_1_result_1,'results/global_max_od_growth_kmedians.txt').
link('results/global_max_od_growth_kmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_rsyd000005_1_result_1,trial_on_minimal_globalmaxod_rsyd000005_1_result_1_proc).
procedure(trial_on_minimal_globalmaxod_rsyd000005_1_result_1_proc).
has_representation(trial_on_minimal_globalmaxod_rsyd000005_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_rsyd000005_1_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_minimal_globalmaxod_rsyd000005_1_result,trial_on_minimal_globalmaxod_rsyd000005_1_result_2).
has_representation(trial_on_minimal_globalmaxod_rsyd000005_1_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_globalmaxod_rsyd000005_1_result_2,'results/global_max_od_growth_wmmedians.txt').
link('results/global_max_od_growth_wmmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_rsyd000005_1_result_2,trial_on_minimal_globalmaxod_rsyd000005_1_result_2_proc).
procedure(trial_on_minimal_globalmaxod_rsyd000005_1_result_2_proc).
has_representation(trial_on_minimal_globalmaxod_rsyd000005_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_rsyd000005_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_globalmaxod_rsyd000005_2,trial_on_minimal_globalmaxod_rsyd000005_2_design).
design(trial_on_minimal_globalmaxod_rsyd000005_2_design).
has_proposition(trial_on_minimal_globalmaxod_rsyd000005_2_design,trial_on_minimal_globalmaxod_rsyd000005_2_factor).
factor(trial_on_minimal_globalmaxod_rsyd000005_2_factor).
has_representation(trial_on_minimal_globalmaxod_rsyd000005_2_factor,'presence or absence of rsyd000005').
has_input(trial_on_minimal_globalmaxod_rsyd000005_2,trial_on_minimal_globalmaxod_rsyd000005_2_data).
data(trial_on_minimal_globalmaxod_rsyd000005_2_data).
has_part(trial_on_minimal_globalmaxod_rsyd000005_2_data,'48 values for global max od of knockout on minimal medium').
has_part(trial_on_minimal_globalmaxod_rsyd000005_2_data,'48 values for global max od of wild type on minimal medium').
has_proposition(trial_on_minimal_globalmaxod_rsyd000005_2_data,'../data/').
link('../data/').
located_in(trial_on_minimal_globalmaxod_rsyd000005_2,'trial-130407_expt001-plate005').
plate('trial-130407_expt001-plate005').
has_proposition(trial_on_minimal_globalmaxod_rsyd000005_2,trial_on_minimal_globalmaxod_rsyd000005_2_result).
result(trial_on_minimal_globalmaxod_rsyd000005_2_result).
has_part(trial_on_minimal_globalmaxod_rsyd000005_2_result,trial_on_minimal_globalmaxod_rsyd000005_2_result_1).
has_representation(trial_on_minimal_globalmaxod_rsyd000005_2_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_globalmaxod_rsyd000005_2_result_1,'results/global_max_od_growth_kmedians.txt').
link('results/global_max_od_growth_kmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_rsyd000005_2_result_1,trial_on_minimal_globalmaxod_rsyd000005_2_result_1_proc).
procedure(trial_on_minimal_globalmaxod_rsyd000005_2_result_1_proc).
has_representation(trial_on_minimal_globalmaxod_rsyd000005_2_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_rsyd000005_2_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_minimal_globalmaxod_rsyd000005_2_result,trial_on_minimal_globalmaxod_rsyd000005_2_result_2).
has_representation(trial_on_minimal_globalmaxod_rsyd000005_2_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_globalmaxod_rsyd000005_2_result_2,'results/global_max_od_growth_wmmedians.txt').
link('results/global_max_od_growth_wmmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_rsyd000005_2_result_2,trial_on_minimal_globalmaxod_rsyd000005_2_result_2_proc).
procedure(trial_on_minimal_globalmaxod_rsyd000005_2_result_2_proc).
has_representation(trial_on_minimal_globalmaxod_rsyd000005_2_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_rsyd000005_2_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_globalmaxod_rsyd000005_3,trial_on_minimal_globalmaxod_rsyd000005_3_design).
design(trial_on_minimal_globalmaxod_rsyd000005_3_design).
has_proposition(trial_on_minimal_globalmaxod_rsyd000005_3_design,trial_on_minimal_globalmaxod_rsyd000005_3_factor).
factor(trial_on_minimal_globalmaxod_rsyd000005_3_factor).
has_representation(trial_on_minimal_globalmaxod_rsyd000005_3_factor,'presence or absence of rsyd000005').
has_input(trial_on_minimal_globalmaxod_rsyd000005_3,trial_on_minimal_globalmaxod_rsyd000005_3_data).
data(trial_on_minimal_globalmaxod_rsyd000005_3_data).
has_part(trial_on_minimal_globalmaxod_rsyd000005_3_data,'48 values for global max od of knockout on minimal medium').
has_part(trial_on_minimal_globalmaxod_rsyd000005_3_data,'48 values for global max od of wild type on minimal medium').
has_proposition(trial_on_minimal_globalmaxod_rsyd000005_3_data,'../data/').
link('../data/').
located_in(trial_on_minimal_globalmaxod_rsyd000005_3,'trial-130407_expt001-plate006').
plate('trial-130407_expt001-plate006').
has_proposition(trial_on_minimal_globalmaxod_rsyd000005_3,trial_on_minimal_globalmaxod_rsyd000005_3_result).
result(trial_on_minimal_globalmaxod_rsyd000005_3_result).
has_part(trial_on_minimal_globalmaxod_rsyd000005_3_result,trial_on_minimal_globalmaxod_rsyd000005_3_result_1).
has_representation(trial_on_minimal_globalmaxod_rsyd000005_3_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_globalmaxod_rsyd000005_3_result_1,'results/global_max_od_growth_kmedians.txt').
link('results/global_max_od_growth_kmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_rsyd000005_3_result_1,trial_on_minimal_globalmaxod_rsyd000005_3_result_1_proc).
procedure(trial_on_minimal_globalmaxod_rsyd000005_3_result_1_proc).
has_representation(trial_on_minimal_globalmaxod_rsyd000005_3_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_rsyd000005_3_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_minimal_globalmaxod_rsyd000005_3_result,trial_on_minimal_globalmaxod_rsyd000005_3_result_2).
has_representation(trial_on_minimal_globalmaxod_rsyd000005_3_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_globalmaxod_rsyd000005_3_result_2,'results/global_max_od_growth_wmmedians.txt').
link('results/global_max_od_growth_wmmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_rsyd000005_3_result_2,trial_on_minimal_globalmaxod_rsyd000005_3_result_2_proc).
procedure(trial_on_minimal_globalmaxod_rsyd000005_3_result_2_proc).
has_representation(trial_on_minimal_globalmaxod_rsyd000005_3_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_rsyd000005_3_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_globalmaxod_rsyd000005,trial_on_minimal_globalmaxod_rsyd000005_results).
result(trial_on_minimal_globalmaxod_rsyd000005_results).
has_part(trial_on_minimal_globalmaxod_rsyd000005_results,trial_on_minimal_globalmaxod_rsyd000005_results_1).
has_representation(trial_on_minimal_globalmaxod_rsyd000005_results_1,'median of knockout medians missing rsyd000005').
text_representation('median of knockout medians missing rsyd000005').
has_proposition(trial_on_minimal_globalmaxod_rsyd000005_results_1,trial_on_minimal_globalmaxod_rsyd000005_results_1_proc).
procedure(trial_on_minimal_globalmaxod_rsyd000005_results_1_proc).
has_proposition(trial_on_minimal_globalmaxod_rsyd000005_results_1_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_minimal_globalmaxod_rsyd000005_results,trial_on_minimal_globalmaxod_rsyd000005_results_2).
has_representation(trial_on_minimal_globalmaxod_rsyd000005_results_2,'median of wild type medians').
text_representation('median of wild type medians').
has_proposition(trial_on_minimal_globalmaxod_rsyd000005_results_2,trial_on_minimal_globalmaxod_rsyd000005_results_2_proc).
procedure(trial_on_minimal_globalmaxod_rsyd000005_results_2_proc).
has_proposition(trial_on_minimal_globalmaxod_rsyd000005_results_2_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_minimal_globalmaxod_rsyd000005_results,trial_on_minimal_globalmaxod_rsyd000005_results_3).
has_representation(trial_on_minimal_globalmaxod_rsyd000005_results_3,'difference between trial_on_minimal_globalmaxod_rsyd000005_results_1 and trial_on_minimal_globalmaxod_rsyd000005_results_2').
text_representation('difference between trial_on_minimal_globalmaxod_rsyd000005_results_1 and trial_on_minimal_globalmaxod_rsyd000005_results_2').
has_proposition(study_on_minimal_globalmaxod,study_on_minimal_globalmaxod_result).
result(study_on_minimal_globalmaxod_result).
has_part(study_on_minimal_globalmaxod_result,study_on_minimal_globalmaxod_result_1).
has_representation(study_on_minimal_globalmaxod_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_minimal_globalmaxod_result_1,'results/wm_km_global_max_od.csv').
link('results/wm_km_global_max_od.csv').
has_proposition(study_on_minimal_globalmaxod_result_1,study_on_minimal_globalmaxod_result_1_proc).
procedure(study_on_minimal_globalmaxod_result_1_proc).
has_proposition(study_on_minimal_globalmaxod_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_minimal_globalmaxod_result,study_on_minimal_globalmaxod_result_2).
has_representation(study_on_minimal_globalmaxod_result_2,'bar graph (histogram) plotting study_on_minimal_globalmaxod_result_1').
text_representation('bar graph (histogram) plotting study_on_minimal_globalmaxod_result_1').
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text_representation('median of wild type medians').
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link('results/wm_km_global_max_od.csv').
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link('procedures/plot3histogramsNoDupl.R').
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text_representation('bar graph (histogram) plotting study_on_minimal_globalmaxod_result_1').
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link('results/overlayed_global_max_od0.8.tiff').
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link('procedures/plot2pretty.m').
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conclusion(study_on_minimal_globalmaxod_conclusion).
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text_representation('The knockouts reach a higher global_max_od in minimal than the wild type').
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link('../data/').
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text_representation('median of knockout on minimal').
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link('results/global_max_od_growth_kmedians.txt').
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text_representation('procedure for obtaining median').
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link('proceduresplotKMedians.R').
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text_representation('median of wild type on minimal').
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link('results/global_max_od_growth_wmmedians.txt').
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link('procedures/plotWMedians.R').
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link('../data/').
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text_representation('median of knockout on minimal').
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link('results/global_max_od_growth_kmedians.txt').
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text_representation('procedure for obtaining median').
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link('proceduresplotKMedians.R').
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text_representation('median of wild type on minimal').
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link('results/global_max_od_growth_wmmedians.txt').
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text_representation('procedure for obtaining median').
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link('procedures/plotWMedians.R').
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link('../data/').
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text_representation('median of knockout on minimal').
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link('results/global_max_od_growth_kmedians.txt').
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text_representation('procedure for obtaining median').
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link('proceduresplotKMedians.R').
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text_representation('median of wild type on minimal').
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link('results/global_max_od_growth_wmmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_yer152c_3_result_2,trial_on_minimal_globalmaxod_yer152c_3_result_2_proc).
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text_representation('procedure for obtaining median').
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link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_globalmaxod_yer152c,trial_on_minimal_globalmaxod_yer152c_results).
result(trial_on_minimal_globalmaxod_yer152c_results).
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text_representation('median of knockout medians missing yer152c').
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link('procedures/remove_dupl_medians.R').
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text_representation('median of wild type medians').
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link('procedures/remove_dupl_medians.R').
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has_representation(trial_on_minimal_globalmaxod_yer152c_results_3,'difference between trial_on_minimal_globalmaxod_yer152c_results_1 and trial_on_minimal_globalmaxod_yer152c_results_2').
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result(study_on_minimal_globalmaxod_result).
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text_representation('vector of differences').
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link('results/wm_km_global_max_od.csv').
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link('procedures/plot3histogramsNoDupl.R').
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text_representation('bar graph (histogram) plotting study_on_minimal_globalmaxod_result_1').
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link('results/overlayed_global_max_od0.8.tiff').
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link('procedures/plot2pretty.m').
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conclusion(study_on_minimal_globalmaxod_conclusion).
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text_representation('The knockouts reach a higher global_max_od in minimal than the wild type').
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strain(rsyd000001).
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link('../data/').
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plate('jan07-lysd1_expt001-plate004').
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text_representation('median of knockout on minimal').
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link('results/global_max_od_growth_kmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_rsyd000001_1_result_1,trial_on_minimal_globalmaxod_rsyd000001_1_result_1_proc).
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text_representation('procedure for obtaining median').
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link('proceduresplotKMedians.R').
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text_representation('median of wild type on minimal').
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link('results/global_max_od_growth_wmmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_rsyd000001_1_result_2,trial_on_minimal_globalmaxod_rsyd000001_1_result_2_proc).
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text_representation('procedure for obtaining median').
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link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_globalmaxod_rsyd000001_2,trial_on_minimal_globalmaxod_rsyd000001_2_design).
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factor(trial_on_minimal_globalmaxod_rsyd000001_2_factor).
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has_proposition(trial_on_minimal_globalmaxod_rsyd000001_2_data,'../data/').
link('../data/').
located_in(trial_on_minimal_globalmaxod_rsyd000001_2,'jan07-lysd1_expt001-plate005').
plate('jan07-lysd1_expt001-plate005').
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has_representation(trial_on_minimal_globalmaxod_rsyd000001_2_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
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link('results/global_max_od_growth_kmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_rsyd000001_2_result_1,trial_on_minimal_globalmaxod_rsyd000001_2_result_1_proc).
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text_representation('procedure for obtaining median').
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link('proceduresplotKMedians.R').
has_part(trial_on_minimal_globalmaxod_rsyd000001_2_result,trial_on_minimal_globalmaxod_rsyd000001_2_result_2).
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text_representation('median of wild type on minimal').
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link('results/global_max_od_growth_wmmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_rsyd000001_2_result_2,trial_on_minimal_globalmaxod_rsyd000001_2_result_2_proc).
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text_representation('procedure for obtaining median').
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link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_globalmaxod_rsyd000001_3,trial_on_minimal_globalmaxod_rsyd000001_3_design).
design(trial_on_minimal_globalmaxod_rsyd000001_3_design).
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factor(trial_on_minimal_globalmaxod_rsyd000001_3_factor).
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data(trial_on_minimal_globalmaxod_rsyd000001_3_data).
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has_part(trial_on_minimal_globalmaxod_rsyd000001_3_data,'48 values for global max od of wild type on minimal medium').
has_proposition(trial_on_minimal_globalmaxod_rsyd000001_3_data,'../data/').
link('../data/').
located_in(trial_on_minimal_globalmaxod_rsyd000001_3,'jan07-lysd1_expt001-plate006').
plate('jan07-lysd1_expt001-plate006').
has_proposition(trial_on_minimal_globalmaxod_rsyd000001_3,trial_on_minimal_globalmaxod_rsyd000001_3_result).
result(trial_on_minimal_globalmaxod_rsyd000001_3_result).
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has_representation(trial_on_minimal_globalmaxod_rsyd000001_3_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_globalmaxod_rsyd000001_3_result_1,'results/global_max_od_growth_kmedians.txt').
link('results/global_max_od_growth_kmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_rsyd000001_3_result_1,trial_on_minimal_globalmaxod_rsyd000001_3_result_1_proc).
procedure(trial_on_minimal_globalmaxod_rsyd000001_3_result_1_proc).
has_representation(trial_on_minimal_globalmaxod_rsyd000001_3_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_rsyd000001_3_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_minimal_globalmaxod_rsyd000001_3_result,trial_on_minimal_globalmaxod_rsyd000001_3_result_2).
has_representation(trial_on_minimal_globalmaxod_rsyd000001_3_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_globalmaxod_rsyd000001_3_result_2,'results/global_max_od_growth_wmmedians.txt').
link('results/global_max_od_growth_wmmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_rsyd000001_3_result_2,trial_on_minimal_globalmaxod_rsyd000001_3_result_2_proc).
procedure(trial_on_minimal_globalmaxod_rsyd000001_3_result_2_proc).
has_representation(trial_on_minimal_globalmaxod_rsyd000001_3_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_rsyd000001_3_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_globalmaxod_rsyd000001,trial_on_minimal_globalmaxod_rsyd000001_results).
result(trial_on_minimal_globalmaxod_rsyd000001_results).
has_part(trial_on_minimal_globalmaxod_rsyd000001_results,trial_on_minimal_globalmaxod_rsyd000001_results_1).
has_representation(trial_on_minimal_globalmaxod_rsyd000001_results_1,'median of knockout medians missing rsyd000001').
text_representation('median of knockout medians missing rsyd000001').
has_proposition(trial_on_minimal_globalmaxod_rsyd000001_results_1,trial_on_minimal_globalmaxod_rsyd000001_results_1_proc).
procedure(trial_on_minimal_globalmaxod_rsyd000001_results_1_proc).
has_proposition(trial_on_minimal_globalmaxod_rsyd000001_results_1_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_minimal_globalmaxod_rsyd000001_results,trial_on_minimal_globalmaxod_rsyd000001_results_2).
has_representation(trial_on_minimal_globalmaxod_rsyd000001_results_2,'median of wild type medians').
text_representation('median of wild type medians').
has_proposition(trial_on_minimal_globalmaxod_rsyd000001_results_2,trial_on_minimal_globalmaxod_rsyd000001_results_2_proc).
procedure(trial_on_minimal_globalmaxod_rsyd000001_results_2_proc).
has_proposition(trial_on_minimal_globalmaxod_rsyd000001_results_2_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_minimal_globalmaxod_rsyd000001_results,trial_on_minimal_globalmaxod_rsyd000001_results_3).
has_representation(trial_on_minimal_globalmaxod_rsyd000001_results_3,'difference between trial_on_minimal_globalmaxod_rsyd000001_results_1 and trial_on_minimal_globalmaxod_rsyd000001_results_2').
text_representation('difference between trial_on_minimal_globalmaxod_rsyd000001_results_1 and trial_on_minimal_globalmaxod_rsyd000001_results_2').
has_proposition(study_on_minimal_globalmaxod,study_on_minimal_globalmaxod_result).
result(study_on_minimal_globalmaxod_result).
has_part(study_on_minimal_globalmaxod_result,study_on_minimal_globalmaxod_result_1).
has_representation(study_on_minimal_globalmaxod_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_minimal_globalmaxod_result_1,'results/wm_km_global_max_od.csv').
link('results/wm_km_global_max_od.csv').
has_proposition(study_on_minimal_globalmaxod_result_1,study_on_minimal_globalmaxod_result_1_proc).
procedure(study_on_minimal_globalmaxod_result_1_proc).
has_proposition(study_on_minimal_globalmaxod_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_minimal_globalmaxod_result,study_on_minimal_globalmaxod_result_2).
has_representation(study_on_minimal_globalmaxod_result_2,'bar graph (histogram) plotting study_on_minimal_globalmaxod_result_1').
text_representation('bar graph (histogram) plotting study_on_minimal_globalmaxod_result_1').
has_proposition(study_on_minimal_globalmaxod_result_2,'results/overlayed_global_max_od0.8.tiff').
link('results/overlayed_global_max_od0.8.tiff').
has_proposition(study_on_minimal_globalmaxod_result_2,study_on_minimal_globalmaxod_result_2_proc).
procedure(study_on_minimal_globalmaxod_result_2_proc).
has_proposition(study_on_minimal_globalmaxod_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_minimal_globalmaxod,study_on_minimal_globalmaxod_conclusion).
conclusion(study_on_minimal_globalmaxod_conclusion).
has_representation(study_on_minimal_globalmaxod_conclusion,'The knockouts reach a higher global_max_od in minimal than the wild type').
text_representation('The knockouts reach a higher global_max_od in minimal than the wild type').
has_proposition(study_on_minimal_globalmaxod_conclusion,'obtain statistical mode of study_on_minimal_globalmaxod_result_1').
procedure('obtain statistical mode of study_on_minimal_globalmaxod_result_1').
text_representation('obtain statistical mode of study_on_minimal_globalmaxod_result_1').
has_part(study_on_minimal_globalmaxod,trial_on_minimal_globalmaxod_rsyd000003).
trial(trial_on_minimal_globalmaxod_rsyd000003).
has_agent(trial_on_minimal_globalmaxod_rsyd000003,rsyd000003).
strain(rsyd000003).
has_proposition(trial_on_minimal_globalmaxod_rsyd000003_1,trial_on_minimal_globalmaxod_rsyd000003_1_design).
design(trial_on_minimal_globalmaxod_rsyd000003_1_design).
has_proposition(trial_on_minimal_globalmaxod_rsyd000003_1_design,trial_on_minimal_globalmaxod_rsyd000003_1_factor).
factor(trial_on_minimal_globalmaxod_rsyd000003_1_factor).
has_representation(trial_on_minimal_globalmaxod_rsyd000003_1_factor,'presence or absence of rsyd000003').
has_input(trial_on_minimal_globalmaxod_rsyd000003_1,trial_on_minimal_globalmaxod_rsyd000003_1_data).
data(trial_on_minimal_globalmaxod_rsyd000003_1_data).
has_part(trial_on_minimal_globalmaxod_rsyd000003_1_data,'48 values for global max od of knockout on minimal medium').
has_part(trial_on_minimal_globalmaxod_rsyd000003_1_data,'48 values for global max od of wild type on minimal medium').
has_proposition(trial_on_minimal_globalmaxod_rsyd000003_1_data,'../data/').
link('../data/').
located_in(trial_on_minimal_globalmaxod_rsyd000003_1,'jan07-lysd1_expt001-plate001').
plate('jan07-lysd1_expt001-plate001').
has_proposition(trial_on_minimal_globalmaxod_rsyd000003_1,trial_on_minimal_globalmaxod_rsyd000003_1_result).
result(trial_on_minimal_globalmaxod_rsyd000003_1_result).
has_part(trial_on_minimal_globalmaxod_rsyd000003_1_result,trial_on_minimal_globalmaxod_rsyd000003_1_result_1).
has_representation(trial_on_minimal_globalmaxod_rsyd000003_1_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_globalmaxod_rsyd000003_1_result_1,'results/global_max_od_growth_kmedians.txt').
link('results/global_max_od_growth_kmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_rsyd000003_1_result_1,trial_on_minimal_globalmaxod_rsyd000003_1_result_1_proc).
procedure(trial_on_minimal_globalmaxod_rsyd000003_1_result_1_proc).
has_representation(trial_on_minimal_globalmaxod_rsyd000003_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_rsyd000003_1_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_minimal_globalmaxod_rsyd000003_1_result,trial_on_minimal_globalmaxod_rsyd000003_1_result_2).
has_representation(trial_on_minimal_globalmaxod_rsyd000003_1_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_globalmaxod_rsyd000003_1_result_2,'results/global_max_od_growth_wmmedians.txt').
link('results/global_max_od_growth_wmmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_rsyd000003_1_result_2,trial_on_minimal_globalmaxod_rsyd000003_1_result_2_proc).
procedure(trial_on_minimal_globalmaxod_rsyd000003_1_result_2_proc).
has_representation(trial_on_minimal_globalmaxod_rsyd000003_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_rsyd000003_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_globalmaxod_rsyd000003_2,trial_on_minimal_globalmaxod_rsyd000003_2_design).
design(trial_on_minimal_globalmaxod_rsyd000003_2_design).
has_proposition(trial_on_minimal_globalmaxod_rsyd000003_2_design,trial_on_minimal_globalmaxod_rsyd000003_2_factor).
factor(trial_on_minimal_globalmaxod_rsyd000003_2_factor).
has_representation(trial_on_minimal_globalmaxod_rsyd000003_2_factor,'presence or absence of rsyd000003').
has_input(trial_on_minimal_globalmaxod_rsyd000003_2,trial_on_minimal_globalmaxod_rsyd000003_2_data).
data(trial_on_minimal_globalmaxod_rsyd000003_2_data).
has_part(trial_on_minimal_globalmaxod_rsyd000003_2_data,'48 values for global max od of knockout on minimal medium').
has_part(trial_on_minimal_globalmaxod_rsyd000003_2_data,'48 values for global max od of wild type on minimal medium').
has_proposition(trial_on_minimal_globalmaxod_rsyd000003_2_data,'../data/').
link('../data/').
located_in(trial_on_minimal_globalmaxod_rsyd000003_2,'jan07-lysd1_expt001-plate002').
plate('jan07-lysd1_expt001-plate002').
has_proposition(trial_on_minimal_globalmaxod_rsyd000003_2,trial_on_minimal_globalmaxod_rsyd000003_2_result).
result(trial_on_minimal_globalmaxod_rsyd000003_2_result).
has_part(trial_on_minimal_globalmaxod_rsyd000003_2_result,trial_on_minimal_globalmaxod_rsyd000003_2_result_1).
has_representation(trial_on_minimal_globalmaxod_rsyd000003_2_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_globalmaxod_rsyd000003_2_result_1,'results/global_max_od_growth_kmedians.txt').
link('results/global_max_od_growth_kmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_rsyd000003_2_result_1,trial_on_minimal_globalmaxod_rsyd000003_2_result_1_proc).
procedure(trial_on_minimal_globalmaxod_rsyd000003_2_result_1_proc).
has_representation(trial_on_minimal_globalmaxod_rsyd000003_2_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_rsyd000003_2_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_minimal_globalmaxod_rsyd000003_2_result,trial_on_minimal_globalmaxod_rsyd000003_2_result_2).
has_representation(trial_on_minimal_globalmaxod_rsyd000003_2_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_globalmaxod_rsyd000003_2_result_2,'results/global_max_od_growth_wmmedians.txt').
link('results/global_max_od_growth_wmmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_rsyd000003_2_result_2,trial_on_minimal_globalmaxod_rsyd000003_2_result_2_proc).
procedure(trial_on_minimal_globalmaxod_rsyd000003_2_result_2_proc).
has_representation(trial_on_minimal_globalmaxod_rsyd000003_2_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_rsyd000003_2_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_globalmaxod_rsyd000003_3,trial_on_minimal_globalmaxod_rsyd000003_3_design).
design(trial_on_minimal_globalmaxod_rsyd000003_3_design).
has_proposition(trial_on_minimal_globalmaxod_rsyd000003_3_design,trial_on_minimal_globalmaxod_rsyd000003_3_factor).
factor(trial_on_minimal_globalmaxod_rsyd000003_3_factor).
has_representation(trial_on_minimal_globalmaxod_rsyd000003_3_factor,'presence or absence of rsyd000003').
has_input(trial_on_minimal_globalmaxod_rsyd000003_3,trial_on_minimal_globalmaxod_rsyd000003_3_data).
data(trial_on_minimal_globalmaxod_rsyd000003_3_data).
has_part(trial_on_minimal_globalmaxod_rsyd000003_3_data,'48 values for global max od of knockout on minimal medium').
has_part(trial_on_minimal_globalmaxod_rsyd000003_3_data,'48 values for global max od of wild type on minimal medium').
has_proposition(trial_on_minimal_globalmaxod_rsyd000003_3_data,'../data/').
link('../data/').
located_in(trial_on_minimal_globalmaxod_rsyd000003_3,'jan07-lysd1_expt001-plate003').
plate('jan07-lysd1_expt001-plate003').
has_proposition(trial_on_minimal_globalmaxod_rsyd000003_3,trial_on_minimal_globalmaxod_rsyd000003_3_result).
result(trial_on_minimal_globalmaxod_rsyd000003_3_result).
has_part(trial_on_minimal_globalmaxod_rsyd000003_3_result,trial_on_minimal_globalmaxod_rsyd000003_3_result_1).
has_representation(trial_on_minimal_globalmaxod_rsyd000003_3_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_globalmaxod_rsyd000003_3_result_1,'results/global_max_od_growth_kmedians.txt').
link('results/global_max_od_growth_kmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_rsyd000003_3_result_1,trial_on_minimal_globalmaxod_rsyd000003_3_result_1_proc).
procedure(trial_on_minimal_globalmaxod_rsyd000003_3_result_1_proc).
has_representation(trial_on_minimal_globalmaxod_rsyd000003_3_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_rsyd000003_3_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_minimal_globalmaxod_rsyd000003_3_result,trial_on_minimal_globalmaxod_rsyd000003_3_result_2).
has_representation(trial_on_minimal_globalmaxod_rsyd000003_3_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_globalmaxod_rsyd000003_3_result_2,'results/global_max_od_growth_wmmedians.txt').
link('results/global_max_od_growth_wmmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_rsyd000003_3_result_2,trial_on_minimal_globalmaxod_rsyd000003_3_result_2_proc).
procedure(trial_on_minimal_globalmaxod_rsyd000003_3_result_2_proc).
has_representation(trial_on_minimal_globalmaxod_rsyd000003_3_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_rsyd000003_3_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_globalmaxod_rsyd000003,trial_on_minimal_globalmaxod_rsyd000003_results).
result(trial_on_minimal_globalmaxod_rsyd000003_results).
has_part(trial_on_minimal_globalmaxod_rsyd000003_results,trial_on_minimal_globalmaxod_rsyd000003_results_1).
has_representation(trial_on_minimal_globalmaxod_rsyd000003_results_1,'median of knockout medians missing rsyd000003').
text_representation('median of knockout medians missing rsyd000003').
has_proposition(trial_on_minimal_globalmaxod_rsyd000003_results_1,trial_on_minimal_globalmaxod_rsyd000003_results_1_proc).
procedure(trial_on_minimal_globalmaxod_rsyd000003_results_1_proc).
has_proposition(trial_on_minimal_globalmaxod_rsyd000003_results_1_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_minimal_globalmaxod_rsyd000003_results,trial_on_minimal_globalmaxod_rsyd000003_results_2).
has_representation(trial_on_minimal_globalmaxod_rsyd000003_results_2,'median of wild type medians').
text_representation('median of wild type medians').
has_proposition(trial_on_minimal_globalmaxod_rsyd000003_results_2,trial_on_minimal_globalmaxod_rsyd000003_results_2_proc).
procedure(trial_on_minimal_globalmaxod_rsyd000003_results_2_proc).
has_proposition(trial_on_minimal_globalmaxod_rsyd000003_results_2_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_minimal_globalmaxod_rsyd000003_results,trial_on_minimal_globalmaxod_rsyd000003_results_3).
has_representation(trial_on_minimal_globalmaxod_rsyd000003_results_3,'difference between trial_on_minimal_globalmaxod_rsyd000003_results_1 and trial_on_minimal_globalmaxod_rsyd000003_results_2').
text_representation('difference between trial_on_minimal_globalmaxod_rsyd000003_results_1 and trial_on_minimal_globalmaxod_rsyd000003_results_2').
has_proposition(study_on_minimal_globalmaxod,study_on_minimal_globalmaxod_result).
result(study_on_minimal_globalmaxod_result).
has_part(study_on_minimal_globalmaxod_result,study_on_minimal_globalmaxod_result_1).
has_representation(study_on_minimal_globalmaxod_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_minimal_globalmaxod_result_1,'results/wm_km_global_max_od.csv').
link('results/wm_km_global_max_od.csv').
has_proposition(study_on_minimal_globalmaxod_result_1,study_on_minimal_globalmaxod_result_1_proc).
procedure(study_on_minimal_globalmaxod_result_1_proc).
has_proposition(study_on_minimal_globalmaxod_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_minimal_globalmaxod_result,study_on_minimal_globalmaxod_result_2).
has_representation(study_on_minimal_globalmaxod_result_2,'bar graph (histogram) plotting study_on_minimal_globalmaxod_result_1').
text_representation('bar graph (histogram) plotting study_on_minimal_globalmaxod_result_1').
has_proposition(study_on_minimal_globalmaxod_result_2,'results/overlayed_global_max_od0.8.tiff').
link('results/overlayed_global_max_od0.8.tiff').
has_proposition(study_on_minimal_globalmaxod_result_2,study_on_minimal_globalmaxod_result_2_proc).
procedure(study_on_minimal_globalmaxod_result_2_proc).
has_proposition(study_on_minimal_globalmaxod_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_minimal_globalmaxod,study_on_minimal_globalmaxod_conclusion).
conclusion(study_on_minimal_globalmaxod_conclusion).
has_representation(study_on_minimal_globalmaxod_conclusion,'The knockouts reach a higher global_max_od in minimal than the wild type').
text_representation('The knockouts reach a higher global_max_od in minimal than the wild type').
has_proposition(study_on_minimal_globalmaxod_conclusion,'obtain statistical mode of study_on_minimal_globalmaxod_result_1').
procedure('obtain statistical mode of study_on_minimal_globalmaxod_result_1').
text_representation('obtain statistical mode of study_on_minimal_globalmaxod_result_1').
has_part(study_on_minimal_globalmaxod,trial_on_minimal_globalmaxod_ynr034w).
trial(trial_on_minimal_globalmaxod_ynr034w).
has_agent(trial_on_minimal_globalmaxod_ynr034w,ynr034w).
strain(ynr034w).
has_proposition(trial_on_minimal_globalmaxod_ynr034w_1,trial_on_minimal_globalmaxod_ynr034w_1_design).
design(trial_on_minimal_globalmaxod_ynr034w_1_design).
has_proposition(trial_on_minimal_globalmaxod_ynr034w_1_design,trial_on_minimal_globalmaxod_ynr034w_1_factor).
factor(trial_on_minimal_globalmaxod_ynr034w_1_factor).
has_representation(trial_on_minimal_globalmaxod_ynr034w_1_factor,'presence or absence of ynr034w').
has_input(trial_on_minimal_globalmaxod_ynr034w_1,trial_on_minimal_globalmaxod_ynr034w_1_data).
data(trial_on_minimal_globalmaxod_ynr034w_1_data).
has_part(trial_on_minimal_globalmaxod_ynr034w_1_data,'48 values for global max od of knockout on minimal medium').
has_part(trial_on_minimal_globalmaxod_ynr034w_1_data,'48 values for global max od of wild type on minimal medium').
has_proposition(trial_on_minimal_globalmaxod_ynr034w_1_data,'../data/').
link('../data/').
located_in(trial_on_minimal_globalmaxod_ynr034w_1,'feb07-trial1_expt001-plate006').
plate('feb07-trial1_expt001-plate006').
has_proposition(trial_on_minimal_globalmaxod_ynr034w_1,trial_on_minimal_globalmaxod_ynr034w_1_result).
result(trial_on_minimal_globalmaxod_ynr034w_1_result).
has_part(trial_on_minimal_globalmaxod_ynr034w_1_result,trial_on_minimal_globalmaxod_ynr034w_1_result_1).
has_representation(trial_on_minimal_globalmaxod_ynr034w_1_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_globalmaxod_ynr034w_1_result_1,'results/global_max_od_growth_kmedians.txt').
link('results/global_max_od_growth_kmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ynr034w_1_result_1,trial_on_minimal_globalmaxod_ynr034w_1_result_1_proc).
procedure(trial_on_minimal_globalmaxod_ynr034w_1_result_1_proc).
has_representation(trial_on_minimal_globalmaxod_ynr034w_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_ynr034w_1_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_minimal_globalmaxod_ynr034w_1_result,trial_on_minimal_globalmaxod_ynr034w_1_result_2).
has_representation(trial_on_minimal_globalmaxod_ynr034w_1_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_globalmaxod_ynr034w_1_result_2,'results/global_max_od_growth_wmmedians.txt').
link('results/global_max_od_growth_wmmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ynr034w_1_result_2,trial_on_minimal_globalmaxod_ynr034w_1_result_2_proc).
procedure(trial_on_minimal_globalmaxod_ynr034w_1_result_2_proc).
has_representation(trial_on_minimal_globalmaxod_ynr034w_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_ynr034w_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_globalmaxod_ynr034w_2,trial_on_minimal_globalmaxod_ynr034w_2_design).
design(trial_on_minimal_globalmaxod_ynr034w_2_design).
has_proposition(trial_on_minimal_globalmaxod_ynr034w_2_design,trial_on_minimal_globalmaxod_ynr034w_2_factor).
factor(trial_on_minimal_globalmaxod_ynr034w_2_factor).
has_representation(trial_on_minimal_globalmaxod_ynr034w_2_factor,'presence or absence of ynr034w').
has_input(trial_on_minimal_globalmaxod_ynr034w_2,trial_on_minimal_globalmaxod_ynr034w_2_data).
data(trial_on_minimal_globalmaxod_ynr034w_2_data).
has_part(trial_on_minimal_globalmaxod_ynr034w_2_data,'48 values for global max od of knockout on minimal medium').
has_part(trial_on_minimal_globalmaxod_ynr034w_2_data,'48 values for global max od of wild type on minimal medium').
has_proposition(trial_on_minimal_globalmaxod_ynr034w_2_data,'../data/').
link('../data/').
located_in(trial_on_minimal_globalmaxod_ynr034w_2,'feb07-trial1_expt001-plate007').
plate('feb07-trial1_expt001-plate007').
has_proposition(trial_on_minimal_globalmaxod_ynr034w_2,trial_on_minimal_globalmaxod_ynr034w_2_result).
result(trial_on_minimal_globalmaxod_ynr034w_2_result).
has_part(trial_on_minimal_globalmaxod_ynr034w_2_result,trial_on_minimal_globalmaxod_ynr034w_2_result_1).
has_representation(trial_on_minimal_globalmaxod_ynr034w_2_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_globalmaxod_ynr034w_2_result_1,'results/global_max_od_growth_kmedians.txt').
link('results/global_max_od_growth_kmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ynr034w_2_result_1,trial_on_minimal_globalmaxod_ynr034w_2_result_1_proc).
procedure(trial_on_minimal_globalmaxod_ynr034w_2_result_1_proc).
has_representation(trial_on_minimal_globalmaxod_ynr034w_2_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_ynr034w_2_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_minimal_globalmaxod_ynr034w_2_result,trial_on_minimal_globalmaxod_ynr034w_2_result_2).
has_representation(trial_on_minimal_globalmaxod_ynr034w_2_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_globalmaxod_ynr034w_2_result_2,'results/global_max_od_growth_wmmedians.txt').
link('results/global_max_od_growth_wmmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ynr034w_2_result_2,trial_on_minimal_globalmaxod_ynr034w_2_result_2_proc).
procedure(trial_on_minimal_globalmaxod_ynr034w_2_result_2_proc).
has_representation(trial_on_minimal_globalmaxod_ynr034w_2_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_ynr034w_2_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_globalmaxod_ynr034w,trial_on_minimal_globalmaxod_ynr034w_results).
result(trial_on_minimal_globalmaxod_ynr034w_results).
has_part(trial_on_minimal_globalmaxod_ynr034w_results,trial_on_minimal_globalmaxod_ynr034w_results_1).
has_representation(trial_on_minimal_globalmaxod_ynr034w_results_1,'median of knockout medians missing ynr034w').
text_representation('median of knockout medians missing ynr034w').
has_proposition(trial_on_minimal_globalmaxod_ynr034w_results_1,trial_on_minimal_globalmaxod_ynr034w_results_1_proc).
procedure(trial_on_minimal_globalmaxod_ynr034w_results_1_proc).
has_proposition(trial_on_minimal_globalmaxod_ynr034w_results_1_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_minimal_globalmaxod_ynr034w_results,trial_on_minimal_globalmaxod_ynr034w_results_2).
has_representation(trial_on_minimal_globalmaxod_ynr034w_results_2,'median of wild type medians').
text_representation('median of wild type medians').
has_proposition(trial_on_minimal_globalmaxod_ynr034w_results_2,trial_on_minimal_globalmaxod_ynr034w_results_2_proc).
procedure(trial_on_minimal_globalmaxod_ynr034w_results_2_proc).
has_proposition(trial_on_minimal_globalmaxod_ynr034w_results_2_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_minimal_globalmaxod_ynr034w_results,trial_on_minimal_globalmaxod_ynr034w_results_3).
has_representation(trial_on_minimal_globalmaxod_ynr034w_results_3,'difference between trial_on_minimal_globalmaxod_ynr034w_results_1 and trial_on_minimal_globalmaxod_ynr034w_results_2').
text_representation('difference between trial_on_minimal_globalmaxod_ynr034w_results_1 and trial_on_minimal_globalmaxod_ynr034w_results_2').
has_proposition(study_on_minimal_globalmaxod,study_on_minimal_globalmaxod_result).
result(study_on_minimal_globalmaxod_result).
has_part(study_on_minimal_globalmaxod_result,study_on_minimal_globalmaxod_result_1).
has_representation(study_on_minimal_globalmaxod_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_minimal_globalmaxod_result_1,'results/wm_km_global_max_od.csv').
link('results/wm_km_global_max_od.csv').
has_proposition(study_on_minimal_globalmaxod_result_1,study_on_minimal_globalmaxod_result_1_proc).
procedure(study_on_minimal_globalmaxod_result_1_proc).
has_proposition(study_on_minimal_globalmaxod_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_minimal_globalmaxod_result,study_on_minimal_globalmaxod_result_2).
has_representation(study_on_minimal_globalmaxod_result_2,'bar graph (histogram) plotting study_on_minimal_globalmaxod_result_1').
text_representation('bar graph (histogram) plotting study_on_minimal_globalmaxod_result_1').
has_proposition(study_on_minimal_globalmaxod_result_2,'results/overlayed_global_max_od0.8.tiff').
link('results/overlayed_global_max_od0.8.tiff').
has_proposition(study_on_minimal_globalmaxod_result_2,study_on_minimal_globalmaxod_result_2_proc).
procedure(study_on_minimal_globalmaxod_result_2_proc).
has_proposition(study_on_minimal_globalmaxod_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_minimal_globalmaxod,study_on_minimal_globalmaxod_conclusion).
conclusion(study_on_minimal_globalmaxod_conclusion).
has_representation(study_on_minimal_globalmaxod_conclusion,'The knockouts reach a higher global_max_od in minimal than the wild type').
text_representation('The knockouts reach a higher global_max_od in minimal than the wild type').
has_proposition(study_on_minimal_globalmaxod_conclusion,'obtain statistical mode of study_on_minimal_globalmaxod_result_1').
procedure('obtain statistical mode of study_on_minimal_globalmaxod_result_1').
text_representation('obtain statistical mode of study_on_minimal_globalmaxod_result_1').
has_part(study_on_minimal_globalmaxod,trial_on_minimal_globalmaxod_yjl218w).
trial(trial_on_minimal_globalmaxod_yjl218w).
has_agent(trial_on_minimal_globalmaxod_yjl218w,yjl218w).
strain(yjl218w).
has_proposition(trial_on_minimal_globalmaxod_yjl218w_1,trial_on_minimal_globalmaxod_yjl218w_1_design).
design(trial_on_minimal_globalmaxod_yjl218w_1_design).
has_proposition(trial_on_minimal_globalmaxod_yjl218w_1_design,trial_on_minimal_globalmaxod_yjl218w_1_factor).
factor(trial_on_minimal_globalmaxod_yjl218w_1_factor).
has_representation(trial_on_minimal_globalmaxod_yjl218w_1_factor,'presence or absence of yjl218w').
has_input(trial_on_minimal_globalmaxod_yjl218w_1,trial_on_minimal_globalmaxod_yjl218w_1_data).
data(trial_on_minimal_globalmaxod_yjl218w_1_data).
has_part(trial_on_minimal_globalmaxod_yjl218w_1_data,'48 values for global max od of knockout on minimal medium').
has_part(trial_on_minimal_globalmaxod_yjl218w_1_data,'48 values for global max od of wild type on minimal medium').
has_proposition(trial_on_minimal_globalmaxod_yjl218w_1_data,'../data/').
link('../data/').
located_in(trial_on_minimal_globalmaxod_yjl218w_1,'jan07-trial2_expt001-plate002').
plate('jan07-trial2_expt001-plate002').
has_proposition(trial_on_minimal_globalmaxod_yjl218w_1,trial_on_minimal_globalmaxod_yjl218w_1_result).
result(trial_on_minimal_globalmaxod_yjl218w_1_result).
has_part(trial_on_minimal_globalmaxod_yjl218w_1_result,trial_on_minimal_globalmaxod_yjl218w_1_result_1).
has_representation(trial_on_minimal_globalmaxod_yjl218w_1_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_globalmaxod_yjl218w_1_result_1,'results/global_max_od_growth_kmedians.txt').
link('results/global_max_od_growth_kmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_yjl218w_1_result_1,trial_on_minimal_globalmaxod_yjl218w_1_result_1_proc).
procedure(trial_on_minimal_globalmaxod_yjl218w_1_result_1_proc).
has_representation(trial_on_minimal_globalmaxod_yjl218w_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_yjl218w_1_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_minimal_globalmaxod_yjl218w_1_result,trial_on_minimal_globalmaxod_yjl218w_1_result_2).
has_representation(trial_on_minimal_globalmaxod_yjl218w_1_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_globalmaxod_yjl218w_1_result_2,'results/global_max_od_growth_wmmedians.txt').
link('results/global_max_od_growth_wmmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_yjl218w_1_result_2,trial_on_minimal_globalmaxod_yjl218w_1_result_2_proc).
procedure(trial_on_minimal_globalmaxod_yjl218w_1_result_2_proc).
has_representation(trial_on_minimal_globalmaxod_yjl218w_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_yjl218w_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_globalmaxod_yjl218w_2,trial_on_minimal_globalmaxod_yjl218w_2_design).
design(trial_on_minimal_globalmaxod_yjl218w_2_design).
has_proposition(trial_on_minimal_globalmaxod_yjl218w_2_design,trial_on_minimal_globalmaxod_yjl218w_2_factor).
factor(trial_on_minimal_globalmaxod_yjl218w_2_factor).
has_representation(trial_on_minimal_globalmaxod_yjl218w_2_factor,'presence or absence of yjl218w').
has_input(trial_on_minimal_globalmaxod_yjl218w_2,trial_on_minimal_globalmaxod_yjl218w_2_data).
data(trial_on_minimal_globalmaxod_yjl218w_2_data).
has_part(trial_on_minimal_globalmaxod_yjl218w_2_data,'48 values for global max od of knockout on minimal medium').
has_part(trial_on_minimal_globalmaxod_yjl218w_2_data,'48 values for global max od of wild type on minimal medium').
has_proposition(trial_on_minimal_globalmaxod_yjl218w_2_data,'../data/').
link('../data/').
located_in(trial_on_minimal_globalmaxod_yjl218w_2,'mar07-trial1_expt001-plate001').
plate('mar07-trial1_expt001-plate001').
has_proposition(trial_on_minimal_globalmaxod_yjl218w_2,trial_on_minimal_globalmaxod_yjl218w_2_result).
result(trial_on_minimal_globalmaxod_yjl218w_2_result).
has_part(trial_on_minimal_globalmaxod_yjl218w_2_result,trial_on_minimal_globalmaxod_yjl218w_2_result_1).
has_representation(trial_on_minimal_globalmaxod_yjl218w_2_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_globalmaxod_yjl218w_2_result_1,'results/global_max_od_growth_kmedians.txt').
link('results/global_max_od_growth_kmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_yjl218w_2_result_1,trial_on_minimal_globalmaxod_yjl218w_2_result_1_proc).
procedure(trial_on_minimal_globalmaxod_yjl218w_2_result_1_proc).
has_representation(trial_on_minimal_globalmaxod_yjl218w_2_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_yjl218w_2_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_minimal_globalmaxod_yjl218w_2_result,trial_on_minimal_globalmaxod_yjl218w_2_result_2).
has_representation(trial_on_minimal_globalmaxod_yjl218w_2_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_globalmaxod_yjl218w_2_result_2,'results/global_max_od_growth_wmmedians.txt').
link('results/global_max_od_growth_wmmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_yjl218w_2_result_2,trial_on_minimal_globalmaxod_yjl218w_2_result_2_proc).
procedure(trial_on_minimal_globalmaxod_yjl218w_2_result_2_proc).
has_representation(trial_on_minimal_globalmaxod_yjl218w_2_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_yjl218w_2_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_globalmaxod_yjl218w,trial_on_minimal_globalmaxod_yjl218w_results).
result(trial_on_minimal_globalmaxod_yjl218w_results).
has_part(trial_on_minimal_globalmaxod_yjl218w_results,trial_on_minimal_globalmaxod_yjl218w_results_1).
has_representation(trial_on_minimal_globalmaxod_yjl218w_results_1,'median of knockout medians missing yjl218w').
text_representation('median of knockout medians missing yjl218w').
has_proposition(trial_on_minimal_globalmaxod_yjl218w_results_1,trial_on_minimal_globalmaxod_yjl218w_results_1_proc).
procedure(trial_on_minimal_globalmaxod_yjl218w_results_1_proc).
has_proposition(trial_on_minimal_globalmaxod_yjl218w_results_1_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_minimal_globalmaxod_yjl218w_results,trial_on_minimal_globalmaxod_yjl218w_results_2).
has_representation(trial_on_minimal_globalmaxod_yjl218w_results_2,'median of wild type medians').
text_representation('median of wild type medians').
has_proposition(trial_on_minimal_globalmaxod_yjl218w_results_2,trial_on_minimal_globalmaxod_yjl218w_results_2_proc).
procedure(trial_on_minimal_globalmaxod_yjl218w_results_2_proc).
has_proposition(trial_on_minimal_globalmaxod_yjl218w_results_2_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_minimal_globalmaxod_yjl218w_results,trial_on_minimal_globalmaxod_yjl218w_results_3).
has_representation(trial_on_minimal_globalmaxod_yjl218w_results_3,'difference between trial_on_minimal_globalmaxod_yjl218w_results_1 and trial_on_minimal_globalmaxod_yjl218w_results_2').
text_representation('difference between trial_on_minimal_globalmaxod_yjl218w_results_1 and trial_on_minimal_globalmaxod_yjl218w_results_2').
has_proposition(study_on_minimal_globalmaxod,study_on_minimal_globalmaxod_result).
result(study_on_minimal_globalmaxod_result).
has_part(study_on_minimal_globalmaxod_result,study_on_minimal_globalmaxod_result_1).
has_representation(study_on_minimal_globalmaxod_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_minimal_globalmaxod_result_1,'results/wm_km_global_max_od.csv').
link('results/wm_km_global_max_od.csv').
has_proposition(study_on_minimal_globalmaxod_result_1,study_on_minimal_globalmaxod_result_1_proc).
procedure(study_on_minimal_globalmaxod_result_1_proc).
has_proposition(study_on_minimal_globalmaxod_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_minimal_globalmaxod_result,study_on_minimal_globalmaxod_result_2).
has_representation(study_on_minimal_globalmaxod_result_2,'bar graph (histogram) plotting study_on_minimal_globalmaxod_result_1').
text_representation('bar graph (histogram) plotting study_on_minimal_globalmaxod_result_1').
has_proposition(study_on_minimal_globalmaxod_result_2,'results/overlayed_global_max_od0.8.tiff').
link('results/overlayed_global_max_od0.8.tiff').
has_proposition(study_on_minimal_globalmaxod_result_2,study_on_minimal_globalmaxod_result_2_proc).
procedure(study_on_minimal_globalmaxod_result_2_proc).
has_proposition(study_on_minimal_globalmaxod_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_minimal_globalmaxod,study_on_minimal_globalmaxod_conclusion).
conclusion(study_on_minimal_globalmaxod_conclusion).
has_representation(study_on_minimal_globalmaxod_conclusion,'The knockouts reach a higher global_max_od in minimal than the wild type').
text_representation('The knockouts reach a higher global_max_od in minimal than the wild type').
has_proposition(study_on_minimal_globalmaxod_conclusion,'obtain statistical mode of study_on_minimal_globalmaxod_result_1').
procedure('obtain statistical mode of study_on_minimal_globalmaxod_result_1').
text_representation('obtain statistical mode of study_on_minimal_globalmaxod_result_1').
has_part(study_on_minimal_globalmaxod,trial_on_minimal_globalmaxod_ydr007w).
trial(trial_on_minimal_globalmaxod_ydr007w).
has_agent(trial_on_minimal_globalmaxod_ydr007w,ydr007w).
strain(ydr007w).
has_proposition(trial_on_minimal_globalmaxod_ydr007w_1,trial_on_minimal_globalmaxod_ydr007w_1_design).
design(trial_on_minimal_globalmaxod_ydr007w_1_design).
has_proposition(trial_on_minimal_globalmaxod_ydr007w_1_design,trial_on_minimal_globalmaxod_ydr007w_1_factor).
factor(trial_on_minimal_globalmaxod_ydr007w_1_factor).
has_representation(trial_on_minimal_globalmaxod_ydr007w_1_factor,'presence or absence of ydr007w').
has_input(trial_on_minimal_globalmaxod_ydr007w_1,trial_on_minimal_globalmaxod_ydr007w_1_data).
data(trial_on_minimal_globalmaxod_ydr007w_1_data).
has_part(trial_on_minimal_globalmaxod_ydr007w_1_data,'48 values for global max od of knockout on minimal medium').
has_part(trial_on_minimal_globalmaxod_ydr007w_1_data,'48 values for global max od of wild type on minimal medium').
has_proposition(trial_on_minimal_globalmaxod_ydr007w_1_data,'../data/').
link('../data/').
located_in(trial_on_minimal_globalmaxod_ydr007w_1,'nature-loop3_expt001-plate007').
plate('nature-loop3_expt001-plate007').
has_proposition(trial_on_minimal_globalmaxod_ydr007w_1,trial_on_minimal_globalmaxod_ydr007w_1_result).
result(trial_on_minimal_globalmaxod_ydr007w_1_result).
has_part(trial_on_minimal_globalmaxod_ydr007w_1_result,trial_on_minimal_globalmaxod_ydr007w_1_result_1).
has_representation(trial_on_minimal_globalmaxod_ydr007w_1_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_globalmaxod_ydr007w_1_result_1,'results/global_max_od_growth_kmedians.txt').
link('results/global_max_od_growth_kmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ydr007w_1_result_1,trial_on_minimal_globalmaxod_ydr007w_1_result_1_proc).
procedure(trial_on_minimal_globalmaxod_ydr007w_1_result_1_proc).
has_representation(trial_on_minimal_globalmaxod_ydr007w_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_ydr007w_1_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_minimal_globalmaxod_ydr007w_1_result,trial_on_minimal_globalmaxod_ydr007w_1_result_2).
has_representation(trial_on_minimal_globalmaxod_ydr007w_1_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_globalmaxod_ydr007w_1_result_2,'results/global_max_od_growth_wmmedians.txt').
link('results/global_max_od_growth_wmmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ydr007w_1_result_2,trial_on_minimal_globalmaxod_ydr007w_1_result_2_proc).
procedure(trial_on_minimal_globalmaxod_ydr007w_1_result_2_proc).
has_representation(trial_on_minimal_globalmaxod_ydr007w_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_ydr007w_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_globalmaxod_ydr007w_2,trial_on_minimal_globalmaxod_ydr007w_2_design).
design(trial_on_minimal_globalmaxod_ydr007w_2_design).
has_proposition(trial_on_minimal_globalmaxod_ydr007w_2_design,trial_on_minimal_globalmaxod_ydr007w_2_factor).
factor(trial_on_minimal_globalmaxod_ydr007w_2_factor).
has_representation(trial_on_minimal_globalmaxod_ydr007w_2_factor,'presence or absence of ydr007w').
has_input(trial_on_minimal_globalmaxod_ydr007w_2,trial_on_minimal_globalmaxod_ydr007w_2_data).
data(trial_on_minimal_globalmaxod_ydr007w_2_data).
has_part(trial_on_minimal_globalmaxod_ydr007w_2_data,'48 values for global max od of knockout on minimal medium').
has_part(trial_on_minimal_globalmaxod_ydr007w_2_data,'48 values for global max od of wild type on minimal medium').
has_proposition(trial_on_minimal_globalmaxod_ydr007w_2_data,'../data/').
link('../data/').
located_in(trial_on_minimal_globalmaxod_ydr007w_2,'nature-loop3_expt002-plate002').
plate('nature-loop3_expt002-plate002').
has_proposition(trial_on_minimal_globalmaxod_ydr007w_2,trial_on_minimal_globalmaxod_ydr007w_2_result).
result(trial_on_minimal_globalmaxod_ydr007w_2_result).
has_part(trial_on_minimal_globalmaxod_ydr007w_2_result,trial_on_minimal_globalmaxod_ydr007w_2_result_1).
has_representation(trial_on_minimal_globalmaxod_ydr007w_2_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_globalmaxod_ydr007w_2_result_1,'results/global_max_od_growth_kmedians.txt').
link('results/global_max_od_growth_kmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ydr007w_2_result_1,trial_on_minimal_globalmaxod_ydr007w_2_result_1_proc).
procedure(trial_on_minimal_globalmaxod_ydr007w_2_result_1_proc).
has_representation(trial_on_minimal_globalmaxod_ydr007w_2_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_ydr007w_2_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_minimal_globalmaxod_ydr007w_2_result,trial_on_minimal_globalmaxod_ydr007w_2_result_2).
has_representation(trial_on_minimal_globalmaxod_ydr007w_2_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_globalmaxod_ydr007w_2_result_2,'results/global_max_od_growth_wmmedians.txt').
link('results/global_max_od_growth_wmmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ydr007w_2_result_2,trial_on_minimal_globalmaxod_ydr007w_2_result_2_proc).
procedure(trial_on_minimal_globalmaxod_ydr007w_2_result_2_proc).
has_representation(trial_on_minimal_globalmaxod_ydr007w_2_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_ydr007w_2_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_globalmaxod_ydr007w_3,trial_on_minimal_globalmaxod_ydr007w_3_design).
design(trial_on_minimal_globalmaxod_ydr007w_3_design).
has_proposition(trial_on_minimal_globalmaxod_ydr007w_3_design,trial_on_minimal_globalmaxod_ydr007w_3_factor).
factor(trial_on_minimal_globalmaxod_ydr007w_3_factor).
has_representation(trial_on_minimal_globalmaxod_ydr007w_3_factor,'presence or absence of ydr007w').
has_input(trial_on_minimal_globalmaxod_ydr007w_3,trial_on_minimal_globalmaxod_ydr007w_3_data).
data(trial_on_minimal_globalmaxod_ydr007w_3_data).
has_part(trial_on_minimal_globalmaxod_ydr007w_3_data,'48 values for global max od of knockout on minimal medium').
has_part(trial_on_minimal_globalmaxod_ydr007w_3_data,'48 values for global max od of wild type on minimal medium').
has_proposition(trial_on_minimal_globalmaxod_ydr007w_3_data,'../data/').
link('../data/').
located_in(trial_on_minimal_globalmaxod_ydr007w_3,'nature-loop3_expt003-plate007').
plate('nature-loop3_expt003-plate007').
has_proposition(trial_on_minimal_globalmaxod_ydr007w_3,trial_on_minimal_globalmaxod_ydr007w_3_result).
result(trial_on_minimal_globalmaxod_ydr007w_3_result).
has_part(trial_on_minimal_globalmaxod_ydr007w_3_result,trial_on_minimal_globalmaxod_ydr007w_3_result_1).
has_representation(trial_on_minimal_globalmaxod_ydr007w_3_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_globalmaxod_ydr007w_3_result_1,'results/global_max_od_growth_kmedians.txt').
link('results/global_max_od_growth_kmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ydr007w_3_result_1,trial_on_minimal_globalmaxod_ydr007w_3_result_1_proc).
procedure(trial_on_minimal_globalmaxod_ydr007w_3_result_1_proc).
has_representation(trial_on_minimal_globalmaxod_ydr007w_3_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_ydr007w_3_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_minimal_globalmaxod_ydr007w_3_result,trial_on_minimal_globalmaxod_ydr007w_3_result_2).
has_representation(trial_on_minimal_globalmaxod_ydr007w_3_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_globalmaxod_ydr007w_3_result_2,'results/global_max_od_growth_wmmedians.txt').
link('results/global_max_od_growth_wmmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ydr007w_3_result_2,trial_on_minimal_globalmaxod_ydr007w_3_result_2_proc).
procedure(trial_on_minimal_globalmaxod_ydr007w_3_result_2_proc).
has_representation(trial_on_minimal_globalmaxod_ydr007w_3_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_ydr007w_3_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_globalmaxod_ydr007w_4,trial_on_minimal_globalmaxod_ydr007w_4_design).
design(trial_on_minimal_globalmaxod_ydr007w_4_design).
has_proposition(trial_on_minimal_globalmaxod_ydr007w_4_design,trial_on_minimal_globalmaxod_ydr007w_4_factor).
factor(trial_on_minimal_globalmaxod_ydr007w_4_factor).
has_representation(trial_on_minimal_globalmaxod_ydr007w_4_factor,'presence or absence of ydr007w').
has_input(trial_on_minimal_globalmaxod_ydr007w_4,trial_on_minimal_globalmaxod_ydr007w_4_data).
data(trial_on_minimal_globalmaxod_ydr007w_4_data).
has_part(trial_on_minimal_globalmaxod_ydr007w_4_data,'48 values for global max od of knockout on minimal medium').
has_part(trial_on_minimal_globalmaxod_ydr007w_4_data,'48 values for global max od of wild type on minimal medium').
has_proposition(trial_on_minimal_globalmaxod_ydr007w_4_data,'../data/').
link('../data/').
located_in(trial_on_minimal_globalmaxod_ydr007w_4,'nature-loop3_expt004-plate002').
plate('nature-loop3_expt004-plate002').
has_proposition(trial_on_minimal_globalmaxod_ydr007w_4,trial_on_minimal_globalmaxod_ydr007w_4_result).
result(trial_on_minimal_globalmaxod_ydr007w_4_result).
has_part(trial_on_minimal_globalmaxod_ydr007w_4_result,trial_on_minimal_globalmaxod_ydr007w_4_result_1).
has_representation(trial_on_minimal_globalmaxod_ydr007w_4_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_globalmaxod_ydr007w_4_result_1,'results/global_max_od_growth_kmedians.txt').
link('results/global_max_od_growth_kmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ydr007w_4_result_1,trial_on_minimal_globalmaxod_ydr007w_4_result_1_proc).
procedure(trial_on_minimal_globalmaxod_ydr007w_4_result_1_proc).
has_representation(trial_on_minimal_globalmaxod_ydr007w_4_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_ydr007w_4_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_minimal_globalmaxod_ydr007w_4_result,trial_on_minimal_globalmaxod_ydr007w_4_result_2).
has_representation(trial_on_minimal_globalmaxod_ydr007w_4_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_globalmaxod_ydr007w_4_result_2,'results/global_max_od_growth_wmmedians.txt').
link('results/global_max_od_growth_wmmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ydr007w_4_result_2,trial_on_minimal_globalmaxod_ydr007w_4_result_2_proc).
procedure(trial_on_minimal_globalmaxod_ydr007w_4_result_2_proc).
has_representation(trial_on_minimal_globalmaxod_ydr007w_4_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_ydr007w_4_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_globalmaxod_ydr007w_5,trial_on_minimal_globalmaxod_ydr007w_5_design).
design(trial_on_minimal_globalmaxod_ydr007w_5_design).
has_proposition(trial_on_minimal_globalmaxod_ydr007w_5_design,trial_on_minimal_globalmaxod_ydr007w_5_factor).
factor(trial_on_minimal_globalmaxod_ydr007w_5_factor).
has_representation(trial_on_minimal_globalmaxod_ydr007w_5_factor,'presence or absence of ydr007w').
has_input(trial_on_minimal_globalmaxod_ydr007w_5,trial_on_minimal_globalmaxod_ydr007w_5_data).
data(trial_on_minimal_globalmaxod_ydr007w_5_data).
has_part(trial_on_minimal_globalmaxod_ydr007w_5_data,'48 values for global max od of knockout on minimal medium').
has_part(trial_on_minimal_globalmaxod_ydr007w_5_data,'48 values for global max od of wild type on minimal medium').
has_proposition(trial_on_minimal_globalmaxod_ydr007w_5_data,'../data/').
link('../data/').
located_in(trial_on_minimal_globalmaxod_ydr007w_5,'nature-loop3_expt005-plate002').
plate('nature-loop3_expt005-plate002').
has_proposition(trial_on_minimal_globalmaxod_ydr007w_5,trial_on_minimal_globalmaxod_ydr007w_5_result).
result(trial_on_minimal_globalmaxod_ydr007w_5_result).
has_part(trial_on_minimal_globalmaxod_ydr007w_5_result,trial_on_minimal_globalmaxod_ydr007w_5_result_1).
has_representation(trial_on_minimal_globalmaxod_ydr007w_5_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_globalmaxod_ydr007w_5_result_1,'results/global_max_od_growth_kmedians.txt').
link('results/global_max_od_growth_kmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ydr007w_5_result_1,trial_on_minimal_globalmaxod_ydr007w_5_result_1_proc).
procedure(trial_on_minimal_globalmaxod_ydr007w_5_result_1_proc).
has_representation(trial_on_minimal_globalmaxod_ydr007w_5_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_ydr007w_5_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_minimal_globalmaxod_ydr007w_5_result,trial_on_minimal_globalmaxod_ydr007w_5_result_2).
has_representation(trial_on_minimal_globalmaxod_ydr007w_5_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_globalmaxod_ydr007w_5_result_2,'results/global_max_od_growth_wmmedians.txt').
link('results/global_max_od_growth_wmmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ydr007w_5_result_2,trial_on_minimal_globalmaxod_ydr007w_5_result_2_proc).
procedure(trial_on_minimal_globalmaxod_ydr007w_5_result_2_proc).
has_representation(trial_on_minimal_globalmaxod_ydr007w_5_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_ydr007w_5_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_globalmaxod_ydr007w_6,trial_on_minimal_globalmaxod_ydr007w_6_design).
design(trial_on_minimal_globalmaxod_ydr007w_6_design).
has_proposition(trial_on_minimal_globalmaxod_ydr007w_6_design,trial_on_minimal_globalmaxod_ydr007w_6_factor).
factor(trial_on_minimal_globalmaxod_ydr007w_6_factor).
has_representation(trial_on_minimal_globalmaxod_ydr007w_6_factor,'presence or absence of ydr007w').
has_input(trial_on_minimal_globalmaxod_ydr007w_6,trial_on_minimal_globalmaxod_ydr007w_6_data).
data(trial_on_minimal_globalmaxod_ydr007w_6_data).
has_part(trial_on_minimal_globalmaxod_ydr007w_6_data,'48 values for global max od of knockout on minimal medium').
has_part(trial_on_minimal_globalmaxod_ydr007w_6_data,'48 values for global max od of wild type on minimal medium').
has_proposition(trial_on_minimal_globalmaxod_ydr007w_6_data,'../data/').
link('../data/').
located_in(trial_on_minimal_globalmaxod_ydr007w_6,'nature-loop1_expt001-plate007').
plate('nature-loop1_expt001-plate007').
has_proposition(trial_on_minimal_globalmaxod_ydr007w_6,trial_on_minimal_globalmaxod_ydr007w_6_result).
result(trial_on_minimal_globalmaxod_ydr007w_6_result).
has_part(trial_on_minimal_globalmaxod_ydr007w_6_result,trial_on_minimal_globalmaxod_ydr007w_6_result_1).
has_representation(trial_on_minimal_globalmaxod_ydr007w_6_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_globalmaxod_ydr007w_6_result_1,'results/global_max_od_growth_kmedians.txt').
link('results/global_max_od_growth_kmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ydr007w_6_result_1,trial_on_minimal_globalmaxod_ydr007w_6_result_1_proc).
procedure(trial_on_minimal_globalmaxod_ydr007w_6_result_1_proc).
has_representation(trial_on_minimal_globalmaxod_ydr007w_6_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_ydr007w_6_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_minimal_globalmaxod_ydr007w_6_result,trial_on_minimal_globalmaxod_ydr007w_6_result_2).
has_representation(trial_on_minimal_globalmaxod_ydr007w_6_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_globalmaxod_ydr007w_6_result_2,'results/global_max_od_growth_wmmedians.txt').
link('results/global_max_od_growth_wmmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ydr007w_6_result_2,trial_on_minimal_globalmaxod_ydr007w_6_result_2_proc).
procedure(trial_on_minimal_globalmaxod_ydr007w_6_result_2_proc).
has_representation(trial_on_minimal_globalmaxod_ydr007w_6_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_ydr007w_6_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_globalmaxod_ydr007w_7,trial_on_minimal_globalmaxod_ydr007w_7_design).
design(trial_on_minimal_globalmaxod_ydr007w_7_design).
has_proposition(trial_on_minimal_globalmaxod_ydr007w_7_design,trial_on_minimal_globalmaxod_ydr007w_7_factor).
factor(trial_on_minimal_globalmaxod_ydr007w_7_factor).
has_representation(trial_on_minimal_globalmaxod_ydr007w_7_factor,'presence or absence of ydr007w').
has_input(trial_on_minimal_globalmaxod_ydr007w_7,trial_on_minimal_globalmaxod_ydr007w_7_data).
data(trial_on_minimal_globalmaxod_ydr007w_7_data).
has_part(trial_on_minimal_globalmaxod_ydr007w_7_data,'48 values for global max od of knockout on minimal medium').
has_part(trial_on_minimal_globalmaxod_ydr007w_7_data,'48 values for global max od of wild type on minimal medium').
has_proposition(trial_on_minimal_globalmaxod_ydr007w_7_data,'../data/').
link('../data/').
located_in(trial_on_minimal_globalmaxod_ydr007w_7,'nature-loop2_expt001-plate003').
plate('nature-loop2_expt001-plate003').
has_proposition(trial_on_minimal_globalmaxod_ydr007w_7,trial_on_minimal_globalmaxod_ydr007w_7_result).
result(trial_on_minimal_globalmaxod_ydr007w_7_result).
has_part(trial_on_minimal_globalmaxod_ydr007w_7_result,trial_on_minimal_globalmaxod_ydr007w_7_result_1).
has_representation(trial_on_minimal_globalmaxod_ydr007w_7_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_globalmaxod_ydr007w_7_result_1,'results/global_max_od_growth_kmedians.txt').
link('results/global_max_od_growth_kmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ydr007w_7_result_1,trial_on_minimal_globalmaxod_ydr007w_7_result_1_proc).
procedure(trial_on_minimal_globalmaxod_ydr007w_7_result_1_proc).
has_representation(trial_on_minimal_globalmaxod_ydr007w_7_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_ydr007w_7_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_minimal_globalmaxod_ydr007w_7_result,trial_on_minimal_globalmaxod_ydr007w_7_result_2).
has_representation(trial_on_minimal_globalmaxod_ydr007w_7_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_globalmaxod_ydr007w_7_result_2,'results/global_max_od_growth_wmmedians.txt').
link('results/global_max_od_growth_wmmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ydr007w_7_result_2,trial_on_minimal_globalmaxod_ydr007w_7_result_2_proc).
procedure(trial_on_minimal_globalmaxod_ydr007w_7_result_2_proc).
has_representation(trial_on_minimal_globalmaxod_ydr007w_7_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_ydr007w_7_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_globalmaxod_ydr007w_8,trial_on_minimal_globalmaxod_ydr007w_8_design).
design(trial_on_minimal_globalmaxod_ydr007w_8_design).
has_proposition(trial_on_minimal_globalmaxod_ydr007w_8_design,trial_on_minimal_globalmaxod_ydr007w_8_factor).
factor(trial_on_minimal_globalmaxod_ydr007w_8_factor).
has_representation(trial_on_minimal_globalmaxod_ydr007w_8_factor,'presence or absence of ydr007w').
has_input(trial_on_minimal_globalmaxod_ydr007w_8,trial_on_minimal_globalmaxod_ydr007w_8_data).
data(trial_on_minimal_globalmaxod_ydr007w_8_data).
has_part(trial_on_minimal_globalmaxod_ydr007w_8_data,'48 values for global max od of knockout on minimal medium').
has_part(trial_on_minimal_globalmaxod_ydr007w_8_data,'48 values for global max od of wild type on minimal medium').
has_proposition(trial_on_minimal_globalmaxod_ydr007w_8_data,'../data/').
link('../data/').
located_in(trial_on_minimal_globalmaxod_ydr007w_8,'nature-loop3_expt006-plate001').
plate('nature-loop3_expt006-plate001').
has_proposition(trial_on_minimal_globalmaxod_ydr007w_8,trial_on_minimal_globalmaxod_ydr007w_8_result).
result(trial_on_minimal_globalmaxod_ydr007w_8_result).
has_part(trial_on_minimal_globalmaxod_ydr007w_8_result,trial_on_minimal_globalmaxod_ydr007w_8_result_1).
has_representation(trial_on_minimal_globalmaxod_ydr007w_8_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_globalmaxod_ydr007w_8_result_1,'results/global_max_od_growth_kmedians.txt').
link('results/global_max_od_growth_kmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ydr007w_8_result_1,trial_on_minimal_globalmaxod_ydr007w_8_result_1_proc).
procedure(trial_on_minimal_globalmaxod_ydr007w_8_result_1_proc).
has_representation(trial_on_minimal_globalmaxod_ydr007w_8_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_ydr007w_8_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_minimal_globalmaxod_ydr007w_8_result,trial_on_minimal_globalmaxod_ydr007w_8_result_2).
has_representation(trial_on_minimal_globalmaxod_ydr007w_8_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_globalmaxod_ydr007w_8_result_2,'results/global_max_od_growth_wmmedians.txt').
link('results/global_max_od_growth_wmmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ydr007w_8_result_2,trial_on_minimal_globalmaxod_ydr007w_8_result_2_proc).
procedure(trial_on_minimal_globalmaxod_ydr007w_8_result_2_proc).
has_representation(trial_on_minimal_globalmaxod_ydr007w_8_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_ydr007w_8_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_globalmaxod_ydr007w,trial_on_minimal_globalmaxod_ydr007w_results).
result(trial_on_minimal_globalmaxod_ydr007w_results).
has_part(trial_on_minimal_globalmaxod_ydr007w_results,trial_on_minimal_globalmaxod_ydr007w_results_1).
has_representation(trial_on_minimal_globalmaxod_ydr007w_results_1,'median of knockout medians missing ydr007w').
text_representation('median of knockout medians missing ydr007w').
has_proposition(trial_on_minimal_globalmaxod_ydr007w_results_1,trial_on_minimal_globalmaxod_ydr007w_results_1_proc).
procedure(trial_on_minimal_globalmaxod_ydr007w_results_1_proc).
has_proposition(trial_on_minimal_globalmaxod_ydr007w_results_1_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_minimal_globalmaxod_ydr007w_results,trial_on_minimal_globalmaxod_ydr007w_results_2).
has_representation(trial_on_minimal_globalmaxod_ydr007w_results_2,'median of wild type medians').
text_representation('median of wild type medians').
has_proposition(trial_on_minimal_globalmaxod_ydr007w_results_2,trial_on_minimal_globalmaxod_ydr007w_results_2_proc).
procedure(trial_on_minimal_globalmaxod_ydr007w_results_2_proc).
has_proposition(trial_on_minimal_globalmaxod_ydr007w_results_2_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_minimal_globalmaxod_ydr007w_results,trial_on_minimal_globalmaxod_ydr007w_results_3).
has_representation(trial_on_minimal_globalmaxod_ydr007w_results_3,'difference between trial_on_minimal_globalmaxod_ydr007w_results_1 and trial_on_minimal_globalmaxod_ydr007w_results_2').
text_representation('difference between trial_on_minimal_globalmaxod_ydr007w_results_1 and trial_on_minimal_globalmaxod_ydr007w_results_2').
has_proposition(study_on_minimal_globalmaxod,study_on_minimal_globalmaxod_result).
result(study_on_minimal_globalmaxod_result).
has_part(study_on_minimal_globalmaxod_result,study_on_minimal_globalmaxod_result_1).
has_representation(study_on_minimal_globalmaxod_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_minimal_globalmaxod_result_1,'results/wm_km_global_max_od.csv').
link('results/wm_km_global_max_od.csv').
has_proposition(study_on_minimal_globalmaxod_result_1,study_on_minimal_globalmaxod_result_1_proc).
procedure(study_on_minimal_globalmaxod_result_1_proc).
has_proposition(study_on_minimal_globalmaxod_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_minimal_globalmaxod_result,study_on_minimal_globalmaxod_result_2).
has_representation(study_on_minimal_globalmaxod_result_2,'bar graph (histogram) plotting study_on_minimal_globalmaxod_result_1').
text_representation('bar graph (histogram) plotting study_on_minimal_globalmaxod_result_1').
has_proposition(study_on_minimal_globalmaxod_result_2,'results/overlayed_global_max_od0.8.tiff').
link('results/overlayed_global_max_od0.8.tiff').
has_proposition(study_on_minimal_globalmaxod_result_2,study_on_minimal_globalmaxod_result_2_proc).
procedure(study_on_minimal_globalmaxod_result_2_proc).
has_proposition(study_on_minimal_globalmaxod_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_minimal_globalmaxod,study_on_minimal_globalmaxod_conclusion).
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text_representation('The knockouts reach a higher global_max_od in minimal than the wild type').
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text_representation('median of knockout on minimal').
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link('proceduresplotKMedians.R').
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text_representation('median of wild type on minimal').
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text_representation('median of knockout on minimal').
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link('proceduresplotKMedians.R').
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text_representation('median of wild type on minimal').
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text_representation('median of knockout on minimal').
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link('proceduresplotKMedians.R').
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text_representation('median of wild type on minimal').
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link('procedures/plotWMedians.R').
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text_representation('median of knockout on minimal').
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link('results/global_max_od_growth_kmedians.txt').
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link('proceduresplotKMedians.R').
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text_representation('median of wild type on minimal').
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link('procedures/plotWMedians.R').
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text_representation('median of knockout on minimal').
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link('results/global_max_od_growth_kmedians.txt').
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link('proceduresplotKMedians.R').
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text_representation('median of wild type on minimal').
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link('procedures/plotWMedians.R').
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text_representation('median of knockout on minimal').
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text_representation('median of wild type on minimal').
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link('procedures/plotWMedians.R').
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text_representation('median of knockout on minimal').
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link('results/global_max_od_growth_kmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ygl026c_7_result_1,trial_on_minimal_globalmaxod_ygl026c_7_result_1_proc).
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text_representation('procedure for obtaining median').
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link('proceduresplotKMedians.R').
has_part(trial_on_minimal_globalmaxod_ygl026c_7_result,trial_on_minimal_globalmaxod_ygl026c_7_result_2).
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text_representation('median of wild type on minimal').
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link('results/global_max_od_growth_wmmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ygl026c_7_result_2,trial_on_minimal_globalmaxod_ygl026c_7_result_2_proc).
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has_representation(trial_on_minimal_globalmaxod_ygl026c_7_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_ygl026c_7_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_globalmaxod_ygl026c_8,trial_on_minimal_globalmaxod_ygl026c_8_design).
design(trial_on_minimal_globalmaxod_ygl026c_8_design).
has_proposition(trial_on_minimal_globalmaxod_ygl026c_8_design,trial_on_minimal_globalmaxod_ygl026c_8_factor).
factor(trial_on_minimal_globalmaxod_ygl026c_8_factor).
has_representation(trial_on_minimal_globalmaxod_ygl026c_8_factor,'presence or absence of ygl026c').
has_input(trial_on_minimal_globalmaxod_ygl026c_8,trial_on_minimal_globalmaxod_ygl026c_8_data).
data(trial_on_minimal_globalmaxod_ygl026c_8_data).
has_part(trial_on_minimal_globalmaxod_ygl026c_8_data,'48 values for global max od of knockout on minimal medium').
has_part(trial_on_minimal_globalmaxod_ygl026c_8_data,'48 values for global max od of wild type on minimal medium').
has_proposition(trial_on_minimal_globalmaxod_ygl026c_8_data,'../data/').
link('../data/').
located_in(trial_on_minimal_globalmaxod_ygl026c_8,'nature-loop3_expt006-plate005').
plate('nature-loop3_expt006-plate005').
has_proposition(trial_on_minimal_globalmaxod_ygl026c_8,trial_on_minimal_globalmaxod_ygl026c_8_result).
result(trial_on_minimal_globalmaxod_ygl026c_8_result).
has_part(trial_on_minimal_globalmaxod_ygl026c_8_result,trial_on_minimal_globalmaxod_ygl026c_8_result_1).
has_representation(trial_on_minimal_globalmaxod_ygl026c_8_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_globalmaxod_ygl026c_8_result_1,'results/global_max_od_growth_kmedians.txt').
link('results/global_max_od_growth_kmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ygl026c_8_result_1,trial_on_minimal_globalmaxod_ygl026c_8_result_1_proc).
procedure(trial_on_minimal_globalmaxod_ygl026c_8_result_1_proc).
has_representation(trial_on_minimal_globalmaxod_ygl026c_8_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_ygl026c_8_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_minimal_globalmaxod_ygl026c_8_result,trial_on_minimal_globalmaxod_ygl026c_8_result_2).
has_representation(trial_on_minimal_globalmaxod_ygl026c_8_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_globalmaxod_ygl026c_8_result_2,'results/global_max_od_growth_wmmedians.txt').
link('results/global_max_od_growth_wmmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ygl026c_8_result_2,trial_on_minimal_globalmaxod_ygl026c_8_result_2_proc).
procedure(trial_on_minimal_globalmaxod_ygl026c_8_result_2_proc).
has_representation(trial_on_minimal_globalmaxod_ygl026c_8_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_ygl026c_8_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_globalmaxod_ygl026c,trial_on_minimal_globalmaxod_ygl026c_results).
result(trial_on_minimal_globalmaxod_ygl026c_results).
has_part(trial_on_minimal_globalmaxod_ygl026c_results,trial_on_minimal_globalmaxod_ygl026c_results_1).
has_representation(trial_on_minimal_globalmaxod_ygl026c_results_1,'median of knockout medians missing ygl026c').
text_representation('median of knockout medians missing ygl026c').
has_proposition(trial_on_minimal_globalmaxod_ygl026c_results_1,trial_on_minimal_globalmaxod_ygl026c_results_1_proc).
procedure(trial_on_minimal_globalmaxod_ygl026c_results_1_proc).
has_proposition(trial_on_minimal_globalmaxod_ygl026c_results_1_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_minimal_globalmaxod_ygl026c_results,trial_on_minimal_globalmaxod_ygl026c_results_2).
has_representation(trial_on_minimal_globalmaxod_ygl026c_results_2,'median of wild type medians').
text_representation('median of wild type medians').
has_proposition(trial_on_minimal_globalmaxod_ygl026c_results_2,trial_on_minimal_globalmaxod_ygl026c_results_2_proc).
procedure(trial_on_minimal_globalmaxod_ygl026c_results_2_proc).
has_proposition(trial_on_minimal_globalmaxod_ygl026c_results_2_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_minimal_globalmaxod_ygl026c_results,trial_on_minimal_globalmaxod_ygl026c_results_3).
has_representation(trial_on_minimal_globalmaxod_ygl026c_results_3,'difference between trial_on_minimal_globalmaxod_ygl026c_results_1 and trial_on_minimal_globalmaxod_ygl026c_results_2').
text_representation('difference between trial_on_minimal_globalmaxod_ygl026c_results_1 and trial_on_minimal_globalmaxod_ygl026c_results_2').
has_proposition(study_on_minimal_globalmaxod,study_on_minimal_globalmaxod_result).
result(study_on_minimal_globalmaxod_result).
has_part(study_on_minimal_globalmaxod_result,study_on_minimal_globalmaxod_result_1).
has_representation(study_on_minimal_globalmaxod_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_minimal_globalmaxod_result_1,'results/wm_km_global_max_od.csv').
link('results/wm_km_global_max_od.csv').
has_proposition(study_on_minimal_globalmaxod_result_1,study_on_minimal_globalmaxod_result_1_proc).
procedure(study_on_minimal_globalmaxod_result_1_proc).
has_proposition(study_on_minimal_globalmaxod_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_minimal_globalmaxod_result,study_on_minimal_globalmaxod_result_2).
has_representation(study_on_minimal_globalmaxod_result_2,'bar graph (histogram) plotting study_on_minimal_globalmaxod_result_1').
text_representation('bar graph (histogram) plotting study_on_minimal_globalmaxod_result_1').
has_proposition(study_on_minimal_globalmaxod_result_2,'results/overlayed_global_max_od0.8.tiff').
link('results/overlayed_global_max_od0.8.tiff').
has_proposition(study_on_minimal_globalmaxod_result_2,study_on_minimal_globalmaxod_result_2_proc).
procedure(study_on_minimal_globalmaxod_result_2_proc).
has_proposition(study_on_minimal_globalmaxod_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_minimal_globalmaxod,study_on_minimal_globalmaxod_conclusion).
conclusion(study_on_minimal_globalmaxod_conclusion).
has_representation(study_on_minimal_globalmaxod_conclusion,'The knockouts reach a higher global_max_od in minimal than the wild type').
text_representation('The knockouts reach a higher global_max_od in minimal than the wild type').
has_proposition(study_on_minimal_globalmaxod_conclusion,'obtain statistical mode of study_on_minimal_globalmaxod_result_1').
procedure('obtain statistical mode of study_on_minimal_globalmaxod_result_1').
text_representation('obtain statistical mode of study_on_minimal_globalmaxod_result_1').
has_part(study_on_minimal_globalmaxod,trial_on_minimal_globalmaxod_ydr354w).
trial(trial_on_minimal_globalmaxod_ydr354w).
has_agent(trial_on_minimal_globalmaxod_ydr354w,ydr354w).
strain(ydr354w).
has_proposition(trial_on_minimal_globalmaxod_ydr354w_1,trial_on_minimal_globalmaxod_ydr354w_1_design).
design(trial_on_minimal_globalmaxod_ydr354w_1_design).
has_proposition(trial_on_minimal_globalmaxod_ydr354w_1_design,trial_on_minimal_globalmaxod_ydr354w_1_factor).
factor(trial_on_minimal_globalmaxod_ydr354w_1_factor).
has_representation(trial_on_minimal_globalmaxod_ydr354w_1_factor,'presence or absence of ydr354w').
has_input(trial_on_minimal_globalmaxod_ydr354w_1,trial_on_minimal_globalmaxod_ydr354w_1_data).
data(trial_on_minimal_globalmaxod_ydr354w_1_data).
has_part(trial_on_minimal_globalmaxod_ydr354w_1_data,'48 values for global max od of knockout on minimal medium').
has_part(trial_on_minimal_globalmaxod_ydr354w_1_data,'48 values for global max od of wild type on minimal medium').
has_proposition(trial_on_minimal_globalmaxod_ydr354w_1_data,'../data/').
link('../data/').
located_in(trial_on_minimal_globalmaxod_ydr354w_1,'nature-loop3_expt001-plate005').
plate('nature-loop3_expt001-plate005').
has_proposition(trial_on_minimal_globalmaxod_ydr354w_1,trial_on_minimal_globalmaxod_ydr354w_1_result).
result(trial_on_minimal_globalmaxod_ydr354w_1_result).
has_part(trial_on_minimal_globalmaxod_ydr354w_1_result,trial_on_minimal_globalmaxod_ydr354w_1_result_1).
has_representation(trial_on_minimal_globalmaxod_ydr354w_1_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_globalmaxod_ydr354w_1_result_1,'results/global_max_od_growth_kmedians.txt').
link('results/global_max_od_growth_kmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ydr354w_1_result_1,trial_on_minimal_globalmaxod_ydr354w_1_result_1_proc).
procedure(trial_on_minimal_globalmaxod_ydr354w_1_result_1_proc).
has_representation(trial_on_minimal_globalmaxod_ydr354w_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_ydr354w_1_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_minimal_globalmaxod_ydr354w_1_result,trial_on_minimal_globalmaxod_ydr354w_1_result_2).
has_representation(trial_on_minimal_globalmaxod_ydr354w_1_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_globalmaxod_ydr354w_1_result_2,'results/global_max_od_growth_wmmedians.txt').
link('results/global_max_od_growth_wmmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ydr354w_1_result_2,trial_on_minimal_globalmaxod_ydr354w_1_result_2_proc).
procedure(trial_on_minimal_globalmaxod_ydr354w_1_result_2_proc).
has_representation(trial_on_minimal_globalmaxod_ydr354w_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_ydr354w_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_globalmaxod_ydr354w_2,trial_on_minimal_globalmaxod_ydr354w_2_design).
design(trial_on_minimal_globalmaxod_ydr354w_2_design).
has_proposition(trial_on_minimal_globalmaxod_ydr354w_2_design,trial_on_minimal_globalmaxod_ydr354w_2_factor).
factor(trial_on_minimal_globalmaxod_ydr354w_2_factor).
has_representation(trial_on_minimal_globalmaxod_ydr354w_2_factor,'presence or absence of ydr354w').
has_input(trial_on_minimal_globalmaxod_ydr354w_2,trial_on_minimal_globalmaxod_ydr354w_2_data).
data(trial_on_minimal_globalmaxod_ydr354w_2_data).
has_part(trial_on_minimal_globalmaxod_ydr354w_2_data,'48 values for global max od of knockout on minimal medium').
has_part(trial_on_minimal_globalmaxod_ydr354w_2_data,'48 values for global max od of wild type on minimal medium').
has_proposition(trial_on_minimal_globalmaxod_ydr354w_2_data,'../data/').
link('../data/').
located_in(trial_on_minimal_globalmaxod_ydr354w_2,'nature-loop3_expt002-plate004').
plate('nature-loop3_expt002-plate004').
has_proposition(trial_on_minimal_globalmaxod_ydr354w_2,trial_on_minimal_globalmaxod_ydr354w_2_result).
result(trial_on_minimal_globalmaxod_ydr354w_2_result).
has_part(trial_on_minimal_globalmaxod_ydr354w_2_result,trial_on_minimal_globalmaxod_ydr354w_2_result_1).
has_representation(trial_on_minimal_globalmaxod_ydr354w_2_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_globalmaxod_ydr354w_2_result_1,'results/global_max_od_growth_kmedians.txt').
link('results/global_max_od_growth_kmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ydr354w_2_result_1,trial_on_minimal_globalmaxod_ydr354w_2_result_1_proc).
procedure(trial_on_minimal_globalmaxod_ydr354w_2_result_1_proc).
has_representation(trial_on_minimal_globalmaxod_ydr354w_2_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_ydr354w_2_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_minimal_globalmaxod_ydr354w_2_result,trial_on_minimal_globalmaxod_ydr354w_2_result_2).
has_representation(trial_on_minimal_globalmaxod_ydr354w_2_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_globalmaxod_ydr354w_2_result_2,'results/global_max_od_growth_wmmedians.txt').
link('results/global_max_od_growth_wmmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ydr354w_2_result_2,trial_on_minimal_globalmaxod_ydr354w_2_result_2_proc).
procedure(trial_on_minimal_globalmaxod_ydr354w_2_result_2_proc).
has_representation(trial_on_minimal_globalmaxod_ydr354w_2_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_ydr354w_2_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_globalmaxod_ydr354w_3,trial_on_minimal_globalmaxod_ydr354w_3_design).
design(trial_on_minimal_globalmaxod_ydr354w_3_design).
has_proposition(trial_on_minimal_globalmaxod_ydr354w_3_design,trial_on_minimal_globalmaxod_ydr354w_3_factor).
factor(trial_on_minimal_globalmaxod_ydr354w_3_factor).
has_representation(trial_on_minimal_globalmaxod_ydr354w_3_factor,'presence or absence of ydr354w').
has_input(trial_on_minimal_globalmaxod_ydr354w_3,trial_on_minimal_globalmaxod_ydr354w_3_data).
data(trial_on_minimal_globalmaxod_ydr354w_3_data).
has_part(trial_on_minimal_globalmaxod_ydr354w_3_data,'48 values for global max od of knockout on minimal medium').
has_part(trial_on_minimal_globalmaxod_ydr354w_3_data,'48 values for global max od of wild type on minimal medium').
has_proposition(trial_on_minimal_globalmaxod_ydr354w_3_data,'../data/').
link('../data/').
located_in(trial_on_minimal_globalmaxod_ydr354w_3,'nature-loop3_expt003-plate005').
plate('nature-loop3_expt003-plate005').
has_proposition(trial_on_minimal_globalmaxod_ydr354w_3,trial_on_minimal_globalmaxod_ydr354w_3_result).
result(trial_on_minimal_globalmaxod_ydr354w_3_result).
has_part(trial_on_minimal_globalmaxod_ydr354w_3_result,trial_on_minimal_globalmaxod_ydr354w_3_result_1).
has_representation(trial_on_minimal_globalmaxod_ydr354w_3_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_globalmaxod_ydr354w_3_result_1,'results/global_max_od_growth_kmedians.txt').
link('results/global_max_od_growth_kmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ydr354w_3_result_1,trial_on_minimal_globalmaxod_ydr354w_3_result_1_proc).
procedure(trial_on_minimal_globalmaxod_ydr354w_3_result_1_proc).
has_representation(trial_on_minimal_globalmaxod_ydr354w_3_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_ydr354w_3_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_minimal_globalmaxod_ydr354w_3_result,trial_on_minimal_globalmaxod_ydr354w_3_result_2).
has_representation(trial_on_minimal_globalmaxod_ydr354w_3_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_globalmaxod_ydr354w_3_result_2,'results/global_max_od_growth_wmmedians.txt').
link('results/global_max_od_growth_wmmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ydr354w_3_result_2,trial_on_minimal_globalmaxod_ydr354w_3_result_2_proc).
procedure(trial_on_minimal_globalmaxod_ydr354w_3_result_2_proc).
has_representation(trial_on_minimal_globalmaxod_ydr354w_3_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_ydr354w_3_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_globalmaxod_ydr354w_4,trial_on_minimal_globalmaxod_ydr354w_4_design).
design(trial_on_minimal_globalmaxod_ydr354w_4_design).
has_proposition(trial_on_minimal_globalmaxod_ydr354w_4_design,trial_on_minimal_globalmaxod_ydr354w_4_factor).
factor(trial_on_minimal_globalmaxod_ydr354w_4_factor).
has_representation(trial_on_minimal_globalmaxod_ydr354w_4_factor,'presence or absence of ydr354w').
has_input(trial_on_minimal_globalmaxod_ydr354w_4,trial_on_minimal_globalmaxod_ydr354w_4_data).
data(trial_on_minimal_globalmaxod_ydr354w_4_data).
has_part(trial_on_minimal_globalmaxod_ydr354w_4_data,'48 values for global max od of knockout on minimal medium').
has_part(trial_on_minimal_globalmaxod_ydr354w_4_data,'48 values for global max od of wild type on minimal medium').
has_proposition(trial_on_minimal_globalmaxod_ydr354w_4_data,'../data/').
link('../data/').
located_in(trial_on_minimal_globalmaxod_ydr354w_4,'nature-loop3_expt004-plate004').
plate('nature-loop3_expt004-plate004').
has_proposition(trial_on_minimal_globalmaxod_ydr354w_4,trial_on_minimal_globalmaxod_ydr354w_4_result).
result(trial_on_minimal_globalmaxod_ydr354w_4_result).
has_part(trial_on_minimal_globalmaxod_ydr354w_4_result,trial_on_minimal_globalmaxod_ydr354w_4_result_1).
has_representation(trial_on_minimal_globalmaxod_ydr354w_4_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_globalmaxod_ydr354w_4_result_1,'results/global_max_od_growth_kmedians.txt').
link('results/global_max_od_growth_kmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ydr354w_4_result_1,trial_on_minimal_globalmaxod_ydr354w_4_result_1_proc).
procedure(trial_on_minimal_globalmaxod_ydr354w_4_result_1_proc).
has_representation(trial_on_minimal_globalmaxod_ydr354w_4_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_ydr354w_4_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_minimal_globalmaxod_ydr354w_4_result,trial_on_minimal_globalmaxod_ydr354w_4_result_2).
has_representation(trial_on_minimal_globalmaxod_ydr354w_4_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_globalmaxod_ydr354w_4_result_2,'results/global_max_od_growth_wmmedians.txt').
link('results/global_max_od_growth_wmmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ydr354w_4_result_2,trial_on_minimal_globalmaxod_ydr354w_4_result_2_proc).
procedure(trial_on_minimal_globalmaxod_ydr354w_4_result_2_proc).
has_representation(trial_on_minimal_globalmaxod_ydr354w_4_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_ydr354w_4_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_globalmaxod_ydr354w_5,trial_on_minimal_globalmaxod_ydr354w_5_design).
design(trial_on_minimal_globalmaxod_ydr354w_5_design).
has_proposition(trial_on_minimal_globalmaxod_ydr354w_5_design,trial_on_minimal_globalmaxod_ydr354w_5_factor).
factor(trial_on_minimal_globalmaxod_ydr354w_5_factor).
has_representation(trial_on_minimal_globalmaxod_ydr354w_5_factor,'presence or absence of ydr354w').
has_input(trial_on_minimal_globalmaxod_ydr354w_5,trial_on_minimal_globalmaxod_ydr354w_5_data).
data(trial_on_minimal_globalmaxod_ydr354w_5_data).
has_part(trial_on_minimal_globalmaxod_ydr354w_5_data,'48 values for global max od of knockout on minimal medium').
has_part(trial_on_minimal_globalmaxod_ydr354w_5_data,'48 values for global max od of wild type on minimal medium').
has_proposition(trial_on_minimal_globalmaxod_ydr354w_5_data,'../data/').
link('../data/').
located_in(trial_on_minimal_globalmaxod_ydr354w_5,'nature-loop3_expt005-plate004').
plate('nature-loop3_expt005-plate004').
has_proposition(trial_on_minimal_globalmaxod_ydr354w_5,trial_on_minimal_globalmaxod_ydr354w_5_result).
result(trial_on_minimal_globalmaxod_ydr354w_5_result).
has_part(trial_on_minimal_globalmaxod_ydr354w_5_result,trial_on_minimal_globalmaxod_ydr354w_5_result_1).
has_representation(trial_on_minimal_globalmaxod_ydr354w_5_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_globalmaxod_ydr354w_5_result_1,'results/global_max_od_growth_kmedians.txt').
link('results/global_max_od_growth_kmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ydr354w_5_result_1,trial_on_minimal_globalmaxod_ydr354w_5_result_1_proc).
procedure(trial_on_minimal_globalmaxod_ydr354w_5_result_1_proc).
has_representation(trial_on_minimal_globalmaxod_ydr354w_5_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_ydr354w_5_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_minimal_globalmaxod_ydr354w_5_result,trial_on_minimal_globalmaxod_ydr354w_5_result_2).
has_representation(trial_on_minimal_globalmaxod_ydr354w_5_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_globalmaxod_ydr354w_5_result_2,'results/global_max_od_growth_wmmedians.txt').
link('results/global_max_od_growth_wmmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ydr354w_5_result_2,trial_on_minimal_globalmaxod_ydr354w_5_result_2_proc).
procedure(trial_on_minimal_globalmaxod_ydr354w_5_result_2_proc).
has_representation(trial_on_minimal_globalmaxod_ydr354w_5_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_ydr354w_5_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_globalmaxod_ydr354w_6,trial_on_minimal_globalmaxod_ydr354w_6_design).
design(trial_on_minimal_globalmaxod_ydr354w_6_design).
has_proposition(trial_on_minimal_globalmaxod_ydr354w_6_design,trial_on_minimal_globalmaxod_ydr354w_6_factor).
factor(trial_on_minimal_globalmaxod_ydr354w_6_factor).
has_representation(trial_on_minimal_globalmaxod_ydr354w_6_factor,'presence or absence of ydr354w').
has_input(trial_on_minimal_globalmaxod_ydr354w_6,trial_on_minimal_globalmaxod_ydr354w_6_data).
data(trial_on_minimal_globalmaxod_ydr354w_6_data).
has_part(trial_on_minimal_globalmaxod_ydr354w_6_data,'48 values for global max od of knockout on minimal medium').
has_part(trial_on_minimal_globalmaxod_ydr354w_6_data,'48 values for global max od of wild type on minimal medium').
has_proposition(trial_on_minimal_globalmaxod_ydr354w_6_data,'../data/').
link('../data/').
located_in(trial_on_minimal_globalmaxod_ydr354w_6,'nature-loop1_expt001-plate005').
plate('nature-loop1_expt001-plate005').
has_proposition(trial_on_minimal_globalmaxod_ydr354w_6,trial_on_minimal_globalmaxod_ydr354w_6_result).
result(trial_on_minimal_globalmaxod_ydr354w_6_result).
has_part(trial_on_minimal_globalmaxod_ydr354w_6_result,trial_on_minimal_globalmaxod_ydr354w_6_result_1).
has_representation(trial_on_minimal_globalmaxod_ydr354w_6_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_globalmaxod_ydr354w_6_result_1,'results/global_max_od_growth_kmedians.txt').
link('results/global_max_od_growth_kmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ydr354w_6_result_1,trial_on_minimal_globalmaxod_ydr354w_6_result_1_proc).
procedure(trial_on_minimal_globalmaxod_ydr354w_6_result_1_proc).
has_representation(trial_on_minimal_globalmaxod_ydr354w_6_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_ydr354w_6_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_minimal_globalmaxod_ydr354w_6_result,trial_on_minimal_globalmaxod_ydr354w_6_result_2).
has_representation(trial_on_minimal_globalmaxod_ydr354w_6_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_globalmaxod_ydr354w_6_result_2,'results/global_max_od_growth_wmmedians.txt').
link('results/global_max_od_growth_wmmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ydr354w_6_result_2,trial_on_minimal_globalmaxod_ydr354w_6_result_2_proc).
procedure(trial_on_minimal_globalmaxod_ydr354w_6_result_2_proc).
has_representation(trial_on_minimal_globalmaxod_ydr354w_6_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_ydr354w_6_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_globalmaxod_ydr354w_7,trial_on_minimal_globalmaxod_ydr354w_7_design).
design(trial_on_minimal_globalmaxod_ydr354w_7_design).
has_proposition(trial_on_minimal_globalmaxod_ydr354w_7_design,trial_on_minimal_globalmaxod_ydr354w_7_factor).
factor(trial_on_minimal_globalmaxod_ydr354w_7_factor).
has_representation(trial_on_minimal_globalmaxod_ydr354w_7_factor,'presence or absence of ydr354w').
has_input(trial_on_minimal_globalmaxod_ydr354w_7,trial_on_minimal_globalmaxod_ydr354w_7_data).
data(trial_on_minimal_globalmaxod_ydr354w_7_data).
has_part(trial_on_minimal_globalmaxod_ydr354w_7_data,'48 values for global max od of knockout on minimal medium').
has_part(trial_on_minimal_globalmaxod_ydr354w_7_data,'48 values for global max od of wild type on minimal medium').
has_proposition(trial_on_minimal_globalmaxod_ydr354w_7_data,'../data/').
link('../data/').
located_in(trial_on_minimal_globalmaxod_ydr354w_7,'nature-loop2_expt001-plate004').
plate('nature-loop2_expt001-plate004').
has_proposition(trial_on_minimal_globalmaxod_ydr354w_7,trial_on_minimal_globalmaxod_ydr354w_7_result).
result(trial_on_minimal_globalmaxod_ydr354w_7_result).
has_part(trial_on_minimal_globalmaxod_ydr354w_7_result,trial_on_minimal_globalmaxod_ydr354w_7_result_1).
has_representation(trial_on_minimal_globalmaxod_ydr354w_7_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_globalmaxod_ydr354w_7_result_1,'results/global_max_od_growth_kmedians.txt').
link('results/global_max_od_growth_kmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ydr354w_7_result_1,trial_on_minimal_globalmaxod_ydr354w_7_result_1_proc).
procedure(trial_on_minimal_globalmaxod_ydr354w_7_result_1_proc).
has_representation(trial_on_minimal_globalmaxod_ydr354w_7_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_ydr354w_7_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_minimal_globalmaxod_ydr354w_7_result,trial_on_minimal_globalmaxod_ydr354w_7_result_2).
has_representation(trial_on_minimal_globalmaxod_ydr354w_7_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_globalmaxod_ydr354w_7_result_2,'results/global_max_od_growth_wmmedians.txt').
link('results/global_max_od_growth_wmmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ydr354w_7_result_2,trial_on_minimal_globalmaxod_ydr354w_7_result_2_proc).
procedure(trial_on_minimal_globalmaxod_ydr354w_7_result_2_proc).
has_representation(trial_on_minimal_globalmaxod_ydr354w_7_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_ydr354w_7_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_globalmaxod_ydr354w_8,trial_on_minimal_globalmaxod_ydr354w_8_design).
design(trial_on_minimal_globalmaxod_ydr354w_8_design).
has_proposition(trial_on_minimal_globalmaxod_ydr354w_8_design,trial_on_minimal_globalmaxod_ydr354w_8_factor).
factor(trial_on_minimal_globalmaxod_ydr354w_8_factor).
has_representation(trial_on_minimal_globalmaxod_ydr354w_8_factor,'presence or absence of ydr354w').
has_input(trial_on_minimal_globalmaxod_ydr354w_8,trial_on_minimal_globalmaxod_ydr354w_8_data).
data(trial_on_minimal_globalmaxod_ydr354w_8_data).
has_part(trial_on_minimal_globalmaxod_ydr354w_8_data,'48 values for global max od of knockout on minimal medium').
has_part(trial_on_minimal_globalmaxod_ydr354w_8_data,'48 values for global max od of wild type on minimal medium').
has_proposition(trial_on_minimal_globalmaxod_ydr354w_8_data,'../data/').
link('../data/').
located_in(trial_on_minimal_globalmaxod_ydr354w_8,'nature-loop3_expt006-plate003').
plate('nature-loop3_expt006-plate003').
has_proposition(trial_on_minimal_globalmaxod_ydr354w_8,trial_on_minimal_globalmaxod_ydr354w_8_result).
result(trial_on_minimal_globalmaxod_ydr354w_8_result).
has_part(trial_on_minimal_globalmaxod_ydr354w_8_result,trial_on_minimal_globalmaxod_ydr354w_8_result_1).
has_representation(trial_on_minimal_globalmaxod_ydr354w_8_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_globalmaxod_ydr354w_8_result_1,'results/global_max_od_growth_kmedians.txt').
link('results/global_max_od_growth_kmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ydr354w_8_result_1,trial_on_minimal_globalmaxod_ydr354w_8_result_1_proc).
procedure(trial_on_minimal_globalmaxod_ydr354w_8_result_1_proc).
has_representation(trial_on_minimal_globalmaxod_ydr354w_8_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_ydr354w_8_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_minimal_globalmaxod_ydr354w_8_result,trial_on_minimal_globalmaxod_ydr354w_8_result_2).
has_representation(trial_on_minimal_globalmaxod_ydr354w_8_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_globalmaxod_ydr354w_8_result_2,'results/global_max_od_growth_wmmedians.txt').
link('results/global_max_od_growth_wmmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ydr354w_8_result_2,trial_on_minimal_globalmaxod_ydr354w_8_result_2_proc).
procedure(trial_on_minimal_globalmaxod_ydr354w_8_result_2_proc).
has_representation(trial_on_minimal_globalmaxod_ydr354w_8_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_ydr354w_8_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_globalmaxod_ydr354w,trial_on_minimal_globalmaxod_ydr354w_results).
result(trial_on_minimal_globalmaxod_ydr354w_results).
has_part(trial_on_minimal_globalmaxod_ydr354w_results,trial_on_minimal_globalmaxod_ydr354w_results_1).
has_representation(trial_on_minimal_globalmaxod_ydr354w_results_1,'median of knockout medians missing ydr354w').
text_representation('median of knockout medians missing ydr354w').
has_proposition(trial_on_minimal_globalmaxod_ydr354w_results_1,trial_on_minimal_globalmaxod_ydr354w_results_1_proc).
procedure(trial_on_minimal_globalmaxod_ydr354w_results_1_proc).
has_proposition(trial_on_minimal_globalmaxod_ydr354w_results_1_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_minimal_globalmaxod_ydr354w_results,trial_on_minimal_globalmaxod_ydr354w_results_2).
has_representation(trial_on_minimal_globalmaxod_ydr354w_results_2,'median of wild type medians').
text_representation('median of wild type medians').
has_proposition(trial_on_minimal_globalmaxod_ydr354w_results_2,trial_on_minimal_globalmaxod_ydr354w_results_2_proc).
procedure(trial_on_minimal_globalmaxod_ydr354w_results_2_proc).
has_proposition(trial_on_minimal_globalmaxod_ydr354w_results_2_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_minimal_globalmaxod_ydr354w_results,trial_on_minimal_globalmaxod_ydr354w_results_3).
has_representation(trial_on_minimal_globalmaxod_ydr354w_results_3,'difference between trial_on_minimal_globalmaxod_ydr354w_results_1 and trial_on_minimal_globalmaxod_ydr354w_results_2').
text_representation('difference between trial_on_minimal_globalmaxod_ydr354w_results_1 and trial_on_minimal_globalmaxod_ydr354w_results_2').
has_proposition(study_on_minimal_globalmaxod,study_on_minimal_globalmaxod_result).
result(study_on_minimal_globalmaxod_result).
has_part(study_on_minimal_globalmaxod_result,study_on_minimal_globalmaxod_result_1).
has_representation(study_on_minimal_globalmaxod_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_minimal_globalmaxod_result_1,'results/wm_km_global_max_od.csv').
link('results/wm_km_global_max_od.csv').
has_proposition(study_on_minimal_globalmaxod_result_1,study_on_minimal_globalmaxod_result_1_proc).
procedure(study_on_minimal_globalmaxod_result_1_proc).
has_proposition(study_on_minimal_globalmaxod_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_minimal_globalmaxod_result,study_on_minimal_globalmaxod_result_2).
has_representation(study_on_minimal_globalmaxod_result_2,'bar graph (histogram) plotting study_on_minimal_globalmaxod_result_1').
text_representation('bar graph (histogram) plotting study_on_minimal_globalmaxod_result_1').
has_proposition(study_on_minimal_globalmaxod_result_2,'results/overlayed_global_max_od0.8.tiff').
link('results/overlayed_global_max_od0.8.tiff').
has_proposition(study_on_minimal_globalmaxod_result_2,study_on_minimal_globalmaxod_result_2_proc).
procedure(study_on_minimal_globalmaxod_result_2_proc).
has_proposition(study_on_minimal_globalmaxod_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_minimal_globalmaxod,study_on_minimal_globalmaxod_conclusion).
conclusion(study_on_minimal_globalmaxod_conclusion).
has_representation(study_on_minimal_globalmaxod_conclusion,'The knockouts reach a higher global_max_od in minimal than the wild type').
text_representation('The knockouts reach a higher global_max_od in minimal than the wild type').
has_proposition(study_on_minimal_globalmaxod_conclusion,'obtain statistical mode of study_on_minimal_globalmaxod_result_1').
procedure('obtain statistical mode of study_on_minimal_globalmaxod_result_1').
text_representation('obtain statistical mode of study_on_minimal_globalmaxod_result_1').
has_part(study_on_minimal_globalmaxod,trial_on_minimal_globalmaxod_yer090w).
trial(trial_on_minimal_globalmaxod_yer090w).
has_agent(trial_on_minimal_globalmaxod_yer090w,yer090w).
strain(yer090w).
has_proposition(trial_on_minimal_globalmaxod_yer090w_1,trial_on_minimal_globalmaxod_yer090w_1_design).
design(trial_on_minimal_globalmaxod_yer090w_1_design).
has_proposition(trial_on_minimal_globalmaxod_yer090w_1_design,trial_on_minimal_globalmaxod_yer090w_1_factor).
factor(trial_on_minimal_globalmaxod_yer090w_1_factor).
has_representation(trial_on_minimal_globalmaxod_yer090w_1_factor,'presence or absence of yer090w').
has_input(trial_on_minimal_globalmaxod_yer090w_1,trial_on_minimal_globalmaxod_yer090w_1_data).
data(trial_on_minimal_globalmaxod_yer090w_1_data).
has_part(trial_on_minimal_globalmaxod_yer090w_1_data,'48 values for global max od of knockout on minimal medium').
has_part(trial_on_minimal_globalmaxod_yer090w_1_data,'48 values for global max od of wild type on minimal medium').
has_proposition(trial_on_minimal_globalmaxod_yer090w_1_data,'../data/').
link('../data/').
located_in(trial_on_minimal_globalmaxod_yer090w_1,'nature-loop3_expt001-plate004').
plate('nature-loop3_expt001-plate004').
has_proposition(trial_on_minimal_globalmaxod_yer090w_1,trial_on_minimal_globalmaxod_yer090w_1_result).
result(trial_on_minimal_globalmaxod_yer090w_1_result).
has_part(trial_on_minimal_globalmaxod_yer090w_1_result,trial_on_minimal_globalmaxod_yer090w_1_result_1).
has_representation(trial_on_minimal_globalmaxod_yer090w_1_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_globalmaxod_yer090w_1_result_1,'results/global_max_od_growth_kmedians.txt').
link('results/global_max_od_growth_kmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_yer090w_1_result_1,trial_on_minimal_globalmaxod_yer090w_1_result_1_proc).
procedure(trial_on_minimal_globalmaxod_yer090w_1_result_1_proc).
has_representation(trial_on_minimal_globalmaxod_yer090w_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_yer090w_1_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_minimal_globalmaxod_yer090w_1_result,trial_on_minimal_globalmaxod_yer090w_1_result_2).
has_representation(trial_on_minimal_globalmaxod_yer090w_1_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_globalmaxod_yer090w_1_result_2,'results/global_max_od_growth_wmmedians.txt').
link('results/global_max_od_growth_wmmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_yer090w_1_result_2,trial_on_minimal_globalmaxod_yer090w_1_result_2_proc).
procedure(trial_on_minimal_globalmaxod_yer090w_1_result_2_proc).
has_representation(trial_on_minimal_globalmaxod_yer090w_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_yer090w_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_globalmaxod_yer090w_2,trial_on_minimal_globalmaxod_yer090w_2_design).
design(trial_on_minimal_globalmaxod_yer090w_2_design).
has_proposition(trial_on_minimal_globalmaxod_yer090w_2_design,trial_on_minimal_globalmaxod_yer090w_2_factor).
factor(trial_on_minimal_globalmaxod_yer090w_2_factor).
has_representation(trial_on_minimal_globalmaxod_yer090w_2_factor,'presence or absence of yer090w').
has_input(trial_on_minimal_globalmaxod_yer090w_2,trial_on_minimal_globalmaxod_yer090w_2_data).
data(trial_on_minimal_globalmaxod_yer090w_2_data).
has_part(trial_on_minimal_globalmaxod_yer090w_2_data,'48 values for global max od of knockout on minimal medium').
has_part(trial_on_minimal_globalmaxod_yer090w_2_data,'48 values for global max od of wild type on minimal medium').
has_proposition(trial_on_minimal_globalmaxod_yer090w_2_data,'../data/').
link('../data/').
located_in(trial_on_minimal_globalmaxod_yer090w_2,'nature-loop3_expt002-plate005').
plate('nature-loop3_expt002-plate005').
has_proposition(trial_on_minimal_globalmaxod_yer090w_2,trial_on_minimal_globalmaxod_yer090w_2_result).
result(trial_on_minimal_globalmaxod_yer090w_2_result).
has_part(trial_on_minimal_globalmaxod_yer090w_2_result,trial_on_minimal_globalmaxod_yer090w_2_result_1).
has_representation(trial_on_minimal_globalmaxod_yer090w_2_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_globalmaxod_yer090w_2_result_1,'results/global_max_od_growth_kmedians.txt').
link('results/global_max_od_growth_kmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_yer090w_2_result_1,trial_on_minimal_globalmaxod_yer090w_2_result_1_proc).
procedure(trial_on_minimal_globalmaxod_yer090w_2_result_1_proc).
has_representation(trial_on_minimal_globalmaxod_yer090w_2_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_yer090w_2_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_minimal_globalmaxod_yer090w_2_result,trial_on_minimal_globalmaxod_yer090w_2_result_2).
has_representation(trial_on_minimal_globalmaxod_yer090w_2_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_globalmaxod_yer090w_2_result_2,'results/global_max_od_growth_wmmedians.txt').
link('results/global_max_od_growth_wmmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_yer090w_2_result_2,trial_on_minimal_globalmaxod_yer090w_2_result_2_proc).
procedure(trial_on_minimal_globalmaxod_yer090w_2_result_2_proc).
has_representation(trial_on_minimal_globalmaxod_yer090w_2_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_yer090w_2_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_globalmaxod_yer090w_3,trial_on_minimal_globalmaxod_yer090w_3_design).
design(trial_on_minimal_globalmaxod_yer090w_3_design).
has_proposition(trial_on_minimal_globalmaxod_yer090w_3_design,trial_on_minimal_globalmaxod_yer090w_3_factor).
factor(trial_on_minimal_globalmaxod_yer090w_3_factor).
has_representation(trial_on_minimal_globalmaxod_yer090w_3_factor,'presence or absence of yer090w').
has_input(trial_on_minimal_globalmaxod_yer090w_3,trial_on_minimal_globalmaxod_yer090w_3_data).
data(trial_on_minimal_globalmaxod_yer090w_3_data).
has_part(trial_on_minimal_globalmaxod_yer090w_3_data,'48 values for global max od of knockout on minimal medium').
has_part(trial_on_minimal_globalmaxod_yer090w_3_data,'48 values for global max od of wild type on minimal medium').
has_proposition(trial_on_minimal_globalmaxod_yer090w_3_data,'../data/').
link('../data/').
located_in(trial_on_minimal_globalmaxod_yer090w_3,'nature-loop3_expt003-plate004').
plate('nature-loop3_expt003-plate004').
has_proposition(trial_on_minimal_globalmaxod_yer090w_3,trial_on_minimal_globalmaxod_yer090w_3_result).
result(trial_on_minimal_globalmaxod_yer090w_3_result).
has_part(trial_on_minimal_globalmaxod_yer090w_3_result,trial_on_minimal_globalmaxod_yer090w_3_result_1).
has_representation(trial_on_minimal_globalmaxod_yer090w_3_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_globalmaxod_yer090w_3_result_1,'results/global_max_od_growth_kmedians.txt').
link('results/global_max_od_growth_kmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_yer090w_3_result_1,trial_on_minimal_globalmaxod_yer090w_3_result_1_proc).
procedure(trial_on_minimal_globalmaxod_yer090w_3_result_1_proc).
has_representation(trial_on_minimal_globalmaxod_yer090w_3_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_yer090w_3_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_minimal_globalmaxod_yer090w_3_result,trial_on_minimal_globalmaxod_yer090w_3_result_2).
has_representation(trial_on_minimal_globalmaxod_yer090w_3_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_globalmaxod_yer090w_3_result_2,'results/global_max_od_growth_wmmedians.txt').
link('results/global_max_od_growth_wmmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_yer090w_3_result_2,trial_on_minimal_globalmaxod_yer090w_3_result_2_proc).
procedure(trial_on_minimal_globalmaxod_yer090w_3_result_2_proc).
has_representation(trial_on_minimal_globalmaxod_yer090w_3_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_yer090w_3_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_globalmaxod_yer090w_4,trial_on_minimal_globalmaxod_yer090w_4_design).
design(trial_on_minimal_globalmaxod_yer090w_4_design).
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link('proceduresplotKMedians.R').
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text_representation('median of wild type on minimal').
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link('proceduresplotKMedians.R').
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text_representation('median of wild type on minimal').
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link('procedures/plotWMedians.R').
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text_representation('median of knockout medians missing yer090w').
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text_representation('median of wild type medians').
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text_representation('bar graph (histogram) plotting study_on_minimal_globalmaxod_result_1').
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text_representation('The knockouts reach a higher global_max_od in minimal than the wild type').
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text_representation('median of knockout on minimal').
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link('results/global_max_od_growth_kmedians.txt').
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text_representation('procedure for obtaining median').
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link('proceduresplotKMedians.R').
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text_representation('median of wild type on minimal').
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link('results/global_max_od_growth_wmmedians.txt').
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text_representation('procedure for obtaining median').
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link('procedures/plotWMedians.R').
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link('../data/').
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plate('feb07-trial1_expt001-plate002').
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text_representation('median of knockout on minimal').
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link('results/global_max_od_growth_kmedians.txt').
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text_representation('procedure for obtaining median').
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link('proceduresplotKMedians.R').
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text_representation('median of wild type on minimal').
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link('results/global_max_od_growth_wmmedians.txt').
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text_representation('median of knockout on minimal').
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text_representation('procedure for obtaining median').
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link('proceduresplotKMedians.R').
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text_representation('median of wild type on minimal').
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link('results/global_max_od_growth_wmmedians.txt').
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text_representation('procedure for obtaining median').
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link('procedures/plotWMedians.R').
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link('../data/').
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text_representation('median of knockout on minimal').
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link('results/global_max_od_growth_kmedians.txt').
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text_representation('procedure for obtaining median').
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link('proceduresplotKMedians.R').
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text_representation('median of wild type on minimal').
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link('results/global_max_od_growth_wmmedians.txt').
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text_representation('procedure for obtaining median').
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link('procedures/plotWMedians.R').
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text_representation('median of knockout medians missing yer183c').
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link('procedures/remove_dupl_medians.R').
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text_representation('median of wild type medians').
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link('procedures/remove_dupl_medians.R').
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result(study_on_minimal_globalmaxod_result).
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text_representation('vector of differences').
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link('results/wm_km_global_max_od.csv').
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link('procedures/plot3histogramsNoDupl.R').
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text_representation('bar graph (histogram) plotting study_on_minimal_globalmaxod_result_1').
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link('results/overlayed_global_max_od0.8.tiff').
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link('procedures/plot2pretty.m').
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conclusion(study_on_minimal_globalmaxod_conclusion).
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text_representation('The knockouts reach a higher global_max_od in minimal than the wild type').
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trial(trial_on_minimal_globalmaxod_yjl045w).
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strain(yjl045w).
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factor(trial_on_minimal_globalmaxod_yjl045w_1_factor).
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data(trial_on_minimal_globalmaxod_yjl045w_1_data).
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has_proposition(trial_on_minimal_globalmaxod_yjl045w_1_data,'../data/').
link('../data/').
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plate('mar07-trial7_expt001-plate001').
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result(trial_on_minimal_globalmaxod_yjl045w_1_result).
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text_representation('median of knockout on minimal').
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link('results/global_max_od_growth_kmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_yjl045w_1_result_1,trial_on_minimal_globalmaxod_yjl045w_1_result_1_proc).
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text_representation('procedure for obtaining median').
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link('proceduresplotKMedians.R').
has_part(trial_on_minimal_globalmaxod_yjl045w_1_result,trial_on_minimal_globalmaxod_yjl045w_1_result_2).
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text_representation('median of wild type on minimal').
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link('results/global_max_od_growth_wmmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_yjl045w_1_result_2,trial_on_minimal_globalmaxod_yjl045w_1_result_2_proc).
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text_representation('procedure for obtaining median').
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link('procedures/plotWMedians.R').
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text_representation('median of knockout medians missing yjl045w').
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link('procedures/remove_dupl_medians.R').
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text_representation('median of wild type medians').
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link('procedures/remove_dupl_medians.R').
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result(study_on_minimal_globalmaxod_result).
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has_representation(study_on_minimal_globalmaxod_result_1,'vector of differences').
text_representation('vector of differences').
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link('results/wm_km_global_max_od.csv').
has_proposition(study_on_minimal_globalmaxod_result_1,study_on_minimal_globalmaxod_result_1_proc).
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link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_minimal_globalmaxod_result,study_on_minimal_globalmaxod_result_2).
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text_representation('bar graph (histogram) plotting study_on_minimal_globalmaxod_result_1').
has_proposition(study_on_minimal_globalmaxod_result_2,'results/overlayed_global_max_od0.8.tiff').
link('results/overlayed_global_max_od0.8.tiff').
has_proposition(study_on_minimal_globalmaxod_result_2,study_on_minimal_globalmaxod_result_2_proc).
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link('procedures/plot2pretty.m').
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conclusion(study_on_minimal_globalmaxod_conclusion).
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text_representation('The knockouts reach a higher global_max_od in minimal than the wild type').
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trial(trial_on_minimal_globalmaxod_ynl316c).
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strain(ynl316c).
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factor(trial_on_minimal_globalmaxod_ynl316c_1_factor).
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data(trial_on_minimal_globalmaxod_ynl316c_1_data).
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has_proposition(trial_on_minimal_globalmaxod_ynl316c_1_data,'../data/').
link('../data/').
located_in(trial_on_minimal_globalmaxod_ynl316c_1,'nature-loop3_expt001-plate001').
plate('nature-loop3_expt001-plate001').
has_proposition(trial_on_minimal_globalmaxod_ynl316c_1,trial_on_minimal_globalmaxod_ynl316c_1_result).
result(trial_on_minimal_globalmaxod_ynl316c_1_result).
has_part(trial_on_minimal_globalmaxod_ynl316c_1_result,trial_on_minimal_globalmaxod_ynl316c_1_result_1).
has_representation(trial_on_minimal_globalmaxod_ynl316c_1_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
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link('results/global_max_od_growth_kmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ynl316c_1_result_1,trial_on_minimal_globalmaxod_ynl316c_1_result_1_proc).
procedure(trial_on_minimal_globalmaxod_ynl316c_1_result_1_proc).
has_representation(trial_on_minimal_globalmaxod_ynl316c_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_ynl316c_1_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_minimal_globalmaxod_ynl316c_1_result,trial_on_minimal_globalmaxod_ynl316c_1_result_2).
has_representation(trial_on_minimal_globalmaxod_ynl316c_1_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
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link('results/global_max_od_growth_wmmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ynl316c_1_result_2,trial_on_minimal_globalmaxod_ynl316c_1_result_2_proc).
procedure(trial_on_minimal_globalmaxod_ynl316c_1_result_2_proc).
has_representation(trial_on_minimal_globalmaxod_ynl316c_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
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link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_globalmaxod_ynl316c_2,trial_on_minimal_globalmaxod_ynl316c_2_design).
design(trial_on_minimal_globalmaxod_ynl316c_2_design).
has_proposition(trial_on_minimal_globalmaxod_ynl316c_2_design,trial_on_minimal_globalmaxod_ynl316c_2_factor).
factor(trial_on_minimal_globalmaxod_ynl316c_2_factor).
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data(trial_on_minimal_globalmaxod_ynl316c_2_data).
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link('../data/').
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plate('nature-loop3_expt002-plate008').
has_proposition(trial_on_minimal_globalmaxod_ynl316c_2,trial_on_minimal_globalmaxod_ynl316c_2_result).
result(trial_on_minimal_globalmaxod_ynl316c_2_result).
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text_representation('median of knockout on minimal').
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link('results/global_max_od_growth_kmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ynl316c_2_result_1,trial_on_minimal_globalmaxod_ynl316c_2_result_1_proc).
procedure(trial_on_minimal_globalmaxod_ynl316c_2_result_1_proc).
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text_representation('procedure for obtaining median').
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link('proceduresplotKMedians.R').
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text_representation('median of wild type on minimal').
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link('results/global_max_od_growth_wmmedians.txt').
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text_representation('procedure for obtaining median').
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link('procedures/plotWMedians.R').
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factor(trial_on_minimal_globalmaxod_ynl316c_3_factor).
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link('../data/').
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plate('nature-loop3_expt003-plate001').
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result(trial_on_minimal_globalmaxod_ynl316c_3_result).
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text_representation('median of knockout on minimal').
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link('results/global_max_od_growth_kmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ynl316c_3_result_1,trial_on_minimal_globalmaxod_ynl316c_3_result_1_proc).
procedure(trial_on_minimal_globalmaxod_ynl316c_3_result_1_proc).
has_representation(trial_on_minimal_globalmaxod_ynl316c_3_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
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link('proceduresplotKMedians.R').
has_part(trial_on_minimal_globalmaxod_ynl316c_3_result,trial_on_minimal_globalmaxod_ynl316c_3_result_2).
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text_representation('median of wild type on minimal').
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link('results/global_max_od_growth_wmmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ynl316c_3_result_2,trial_on_minimal_globalmaxod_ynl316c_3_result_2_proc).
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text_representation('procedure for obtaining median').
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link('procedures/plotWMedians.R').
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has_proposition(trial_on_minimal_globalmaxod_ynl316c_4_design,trial_on_minimal_globalmaxod_ynl316c_4_factor).
factor(trial_on_minimal_globalmaxod_ynl316c_4_factor).
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link('../data/').
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plate('nature-loop3_expt004-plate008').
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result(trial_on_minimal_globalmaxod_ynl316c_4_result).
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has_representation(trial_on_minimal_globalmaxod_ynl316c_4_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
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link('results/global_max_od_growth_kmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ynl316c_4_result_1,trial_on_minimal_globalmaxod_ynl316c_4_result_1_proc).
procedure(trial_on_minimal_globalmaxod_ynl316c_4_result_1_proc).
has_representation(trial_on_minimal_globalmaxod_ynl316c_4_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
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link('proceduresplotKMedians.R').
has_part(trial_on_minimal_globalmaxod_ynl316c_4_result,trial_on_minimal_globalmaxod_ynl316c_4_result_2).
has_representation(trial_on_minimal_globalmaxod_ynl316c_4_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
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link('results/global_max_od_growth_wmmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ynl316c_4_result_2,trial_on_minimal_globalmaxod_ynl316c_4_result_2_proc).
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text_representation('procedure for obtaining median').
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link('procedures/plotWMedians.R').
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factor(trial_on_minimal_globalmaxod_ynl316c_5_factor).
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link('../data/').
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plate('nature-loop3_expt005-plate008').
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has_representation(trial_on_minimal_globalmaxod_ynl316c_5_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
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link('results/global_max_od_growth_kmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ynl316c_5_result_1,trial_on_minimal_globalmaxod_ynl316c_5_result_1_proc).
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text_representation('procedure for obtaining median').
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link('proceduresplotKMedians.R').
has_part(trial_on_minimal_globalmaxod_ynl316c_5_result,trial_on_minimal_globalmaxod_ynl316c_5_result_2).
has_representation(trial_on_minimal_globalmaxod_ynl316c_5_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
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link('results/global_max_od_growth_wmmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ynl316c_5_result_2,trial_on_minimal_globalmaxod_ynl316c_5_result_2_proc).
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text_representation('procedure for obtaining median').
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link('procedures/plotWMedians.R').
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factor(trial_on_minimal_globalmaxod_ynl316c_6_factor).
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link('../data/').
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plate('nature-loop1_expt001-plate001').
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has_representation(trial_on_minimal_globalmaxod_ynl316c_6_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
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link('results/global_max_od_growth_kmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ynl316c_6_result_1,trial_on_minimal_globalmaxod_ynl316c_6_result_1_proc).
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text_representation('procedure for obtaining median').
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link('proceduresplotKMedians.R').
has_part(trial_on_minimal_globalmaxod_ynl316c_6_result,trial_on_minimal_globalmaxod_ynl316c_6_result_2).
has_representation(trial_on_minimal_globalmaxod_ynl316c_6_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
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link('results/global_max_od_growth_wmmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ynl316c_6_result_2,trial_on_minimal_globalmaxod_ynl316c_6_result_2_proc).
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text_representation('procedure for obtaining median').
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link('procedures/plotWMedians.R').
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link('../data/').
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text_representation('median of knockout on minimal').
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link('results/global_max_od_growth_kmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ynl316c_7_result_1,trial_on_minimal_globalmaxod_ynl316c_7_result_1_proc).
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text_representation('procedure for obtaining median').
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link('proceduresplotKMedians.R').
has_part(trial_on_minimal_globalmaxod_ynl316c_7_result,trial_on_minimal_globalmaxod_ynl316c_7_result_2).
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text_representation('median of wild type on minimal').
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link('results/global_max_od_growth_wmmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ynl316c_7_result_2,trial_on_minimal_globalmaxod_ynl316c_7_result_2_proc).
procedure(trial_on_minimal_globalmaxod_ynl316c_7_result_2_proc).
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text_representation('procedure for obtaining median').
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link('procedures/plotWMedians.R').
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factor(trial_on_minimal_globalmaxod_ynl316c_8_factor).
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has_part(trial_on_minimal_globalmaxod_ynl316c_8_data,'48 values for global max od of wild type on minimal medium').
has_proposition(trial_on_minimal_globalmaxod_ynl316c_8_data,'../data/').
link('../data/').
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plate('nature-loop3_expt006-plate007').
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has_representation(trial_on_minimal_globalmaxod_ynl316c_8_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
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link('results/global_max_od_growth_kmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ynl316c_8_result_1,trial_on_minimal_globalmaxod_ynl316c_8_result_1_proc).
procedure(trial_on_minimal_globalmaxod_ynl316c_8_result_1_proc).
has_representation(trial_on_minimal_globalmaxod_ynl316c_8_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
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link('proceduresplotKMedians.R').
has_part(trial_on_minimal_globalmaxod_ynl316c_8_result,trial_on_minimal_globalmaxod_ynl316c_8_result_2).
has_representation(trial_on_minimal_globalmaxod_ynl316c_8_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
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link('results/global_max_od_growth_wmmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ynl316c_8_result_2,trial_on_minimal_globalmaxod_ynl316c_8_result_2_proc).
procedure(trial_on_minimal_globalmaxod_ynl316c_8_result_2_proc).
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text_representation('procedure for obtaining median').
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link('procedures/plotWMedians.R').
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text_representation('median of knockout medians missing ynl316c').
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link('procedures/remove_dupl_medians.R').
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text_representation('median of wild type medians').
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text_representation('The knockouts reach a higher global_max_od in minimal than the wild type').
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text_representation('median of knockout on minimal').
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text_representation('procedure for obtaining median').
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link('proceduresplotKMedians.R').
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text_representation('median of wild type on minimal').
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text_representation('procedure for obtaining median').
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link('procedures/plotWMedians.R').
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text_representation('median of knockout on minimal').
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text_representation('procedure for obtaining median').
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link('proceduresplotKMedians.R').
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text_representation('median of wild type on minimal').
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link('results/global_max_od_growth_wmmedians.txt').
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text_representation('procedure for obtaining median').
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link('procedures/plotWMedians.R').
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link('../data/').
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text_representation('median of knockout on minimal').
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link('results/global_max_od_growth_kmedians.txt').
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text_representation('procedure for obtaining median').
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link('proceduresplotKMedians.R').
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text_representation('median of wild type on minimal').
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link('results/global_max_od_growth_wmmedians.txt').
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text_representation('procedure for obtaining median').
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link('procedures/plotWMedians.R').
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text_representation('median of knockout on minimal').
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text_representation('procedure for obtaining median').
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text_representation('median of wild type on minimal').
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text_representation('procedure for obtaining median').
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text_representation('median of knockout on minimal').
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text_representation('procedure for obtaining median').
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link('proceduresplotKMedians.R').
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text_representation('median of wild type on minimal').
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text_representation('procedure for obtaining median').
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link('procedures/plotWMedians.R').
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link('../data/').
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text_representation('median of knockout on minimal').
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link('results/global_max_od_growth_kmedians.txt').
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text_representation('procedure for obtaining median').
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link('proceduresplotKMedians.R').
has_part(trial_on_minimal_globalmaxod_ydl052c_6_result,trial_on_minimal_globalmaxod_ydl052c_6_result_2).
has_representation(trial_on_minimal_globalmaxod_ydl052c_6_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
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link('results/global_max_od_growth_wmmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ydl052c_6_result_2,trial_on_minimal_globalmaxod_ydl052c_6_result_2_proc).
procedure(trial_on_minimal_globalmaxod_ydl052c_6_result_2_proc).
has_representation(trial_on_minimal_globalmaxod_ydl052c_6_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_ydl052c_6_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_globalmaxod_ydl052c,trial_on_minimal_globalmaxod_ydl052c_results).
result(trial_on_minimal_globalmaxod_ydl052c_results).
has_part(trial_on_minimal_globalmaxod_ydl052c_results,trial_on_minimal_globalmaxod_ydl052c_results_1).
has_representation(trial_on_minimal_globalmaxod_ydl052c_results_1,'median of knockout medians missing ydl052c').
text_representation('median of knockout medians missing ydl052c').
has_proposition(trial_on_minimal_globalmaxod_ydl052c_results_1,trial_on_minimal_globalmaxod_ydl052c_results_1_proc).
procedure(trial_on_minimal_globalmaxod_ydl052c_results_1_proc).
has_proposition(trial_on_minimal_globalmaxod_ydl052c_results_1_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_minimal_globalmaxod_ydl052c_results,trial_on_minimal_globalmaxod_ydl052c_results_2).
has_representation(trial_on_minimal_globalmaxod_ydl052c_results_2,'median of wild type medians').
text_representation('median of wild type medians').
has_proposition(trial_on_minimal_globalmaxod_ydl052c_results_2,trial_on_minimal_globalmaxod_ydl052c_results_2_proc).
procedure(trial_on_minimal_globalmaxod_ydl052c_results_2_proc).
has_proposition(trial_on_minimal_globalmaxod_ydl052c_results_2_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_minimal_globalmaxod_ydl052c_results,trial_on_minimal_globalmaxod_ydl052c_results_3).
has_representation(trial_on_minimal_globalmaxod_ydl052c_results_3,'difference between trial_on_minimal_globalmaxod_ydl052c_results_1 and trial_on_minimal_globalmaxod_ydl052c_results_2').
text_representation('difference between trial_on_minimal_globalmaxod_ydl052c_results_1 and trial_on_minimal_globalmaxod_ydl052c_results_2').
has_proposition(study_on_minimal_globalmaxod,study_on_minimal_globalmaxod_result).
result(study_on_minimal_globalmaxod_result).
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has_representation(study_on_minimal_globalmaxod_result_1,'vector of differences').
text_representation('vector of differences').
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link('results/wm_km_global_max_od.csv').
has_proposition(study_on_minimal_globalmaxod_result_1,study_on_minimal_globalmaxod_result_1_proc).
procedure(study_on_minimal_globalmaxod_result_1_proc).
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link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_minimal_globalmaxod_result,study_on_minimal_globalmaxod_result_2).
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text_representation('bar graph (histogram) plotting study_on_minimal_globalmaxod_result_1').
has_proposition(study_on_minimal_globalmaxod_result_2,'results/overlayed_global_max_od0.8.tiff').
link('results/overlayed_global_max_od0.8.tiff').
has_proposition(study_on_minimal_globalmaxod_result_2,study_on_minimal_globalmaxod_result_2_proc).
procedure(study_on_minimal_globalmaxod_result_2_proc).
has_proposition(study_on_minimal_globalmaxod_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_minimal_globalmaxod,study_on_minimal_globalmaxod_conclusion).
conclusion(study_on_minimal_globalmaxod_conclusion).
has_representation(study_on_minimal_globalmaxod_conclusion,'The knockouts reach a higher global_max_od in minimal than the wild type').
text_representation('The knockouts reach a higher global_max_od in minimal than the wild type').
has_proposition(study_on_minimal_globalmaxod_conclusion,'obtain statistical mode of study_on_minimal_globalmaxod_result_1').
procedure('obtain statistical mode of study_on_minimal_globalmaxod_result_1').
text_representation('obtain statistical mode of study_on_minimal_globalmaxod_result_1').
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strain(yil033c).
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design(trial_on_minimal_globalmaxod_yil033c_1_design).
has_proposition(trial_on_minimal_globalmaxod_yil033c_1_design,trial_on_minimal_globalmaxod_yil033c_1_factor).
factor(trial_on_minimal_globalmaxod_yil033c_1_factor).
has_representation(trial_on_minimal_globalmaxod_yil033c_1_factor,'presence or absence of yil033c').
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data(trial_on_minimal_globalmaxod_yil033c_1_data).
has_part(trial_on_minimal_globalmaxod_yil033c_1_data,'48 values for global max od of knockout on minimal medium').
has_part(trial_on_minimal_globalmaxod_yil033c_1_data,'48 values for global max od of wild type on minimal medium').
has_proposition(trial_on_minimal_globalmaxod_yil033c_1_data,'../data/').
link('../data/').
located_in(trial_on_minimal_globalmaxod_yil033c_1,'mar07-trial5_expt001-plate001').
plate('mar07-trial5_expt001-plate001').
has_proposition(trial_on_minimal_globalmaxod_yil033c_1,trial_on_minimal_globalmaxod_yil033c_1_result).
result(trial_on_minimal_globalmaxod_yil033c_1_result).
has_part(trial_on_minimal_globalmaxod_yil033c_1_result,trial_on_minimal_globalmaxod_yil033c_1_result_1).
has_representation(trial_on_minimal_globalmaxod_yil033c_1_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
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link('results/global_max_od_growth_kmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_yil033c_1_result_1,trial_on_minimal_globalmaxod_yil033c_1_result_1_proc).
procedure(trial_on_minimal_globalmaxod_yil033c_1_result_1_proc).
has_representation(trial_on_minimal_globalmaxod_yil033c_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_yil033c_1_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_minimal_globalmaxod_yil033c_1_result,trial_on_minimal_globalmaxod_yil033c_1_result_2).
has_representation(trial_on_minimal_globalmaxod_yil033c_1_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_globalmaxod_yil033c_1_result_2,'results/global_max_od_growth_wmmedians.txt').
link('results/global_max_od_growth_wmmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_yil033c_1_result_2,trial_on_minimal_globalmaxod_yil033c_1_result_2_proc).
procedure(trial_on_minimal_globalmaxod_yil033c_1_result_2_proc).
has_representation(trial_on_minimal_globalmaxod_yil033c_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
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link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_globalmaxod_yil033c_2,trial_on_minimal_globalmaxod_yil033c_2_design).
design(trial_on_minimal_globalmaxod_yil033c_2_design).
has_proposition(trial_on_minimal_globalmaxod_yil033c_2_design,trial_on_minimal_globalmaxod_yil033c_2_factor).
factor(trial_on_minimal_globalmaxod_yil033c_2_factor).
has_representation(trial_on_minimal_globalmaxod_yil033c_2_factor,'presence or absence of yil033c').
has_input(trial_on_minimal_globalmaxod_yil033c_2,trial_on_minimal_globalmaxod_yil033c_2_data).
data(trial_on_minimal_globalmaxod_yil033c_2_data).
has_part(trial_on_minimal_globalmaxod_yil033c_2_data,'48 values for global max od of knockout on minimal medium').
has_part(trial_on_minimal_globalmaxod_yil033c_2_data,'48 values for global max od of wild type on minimal medium').
has_proposition(trial_on_minimal_globalmaxod_yil033c_2_data,'../data/').
link('../data/').
located_in(trial_on_minimal_globalmaxod_yil033c_2,'mar07-trial5_expt001-plate002').
plate('mar07-trial5_expt001-plate002').
has_proposition(trial_on_minimal_globalmaxod_yil033c_2,trial_on_minimal_globalmaxod_yil033c_2_result).
result(trial_on_minimal_globalmaxod_yil033c_2_result).
has_part(trial_on_minimal_globalmaxod_yil033c_2_result,trial_on_minimal_globalmaxod_yil033c_2_result_1).
has_representation(trial_on_minimal_globalmaxod_yil033c_2_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_globalmaxod_yil033c_2_result_1,'results/global_max_od_growth_kmedians.txt').
link('results/global_max_od_growth_kmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_yil033c_2_result_1,trial_on_minimal_globalmaxod_yil033c_2_result_1_proc).
procedure(trial_on_minimal_globalmaxod_yil033c_2_result_1_proc).
has_representation(trial_on_minimal_globalmaxod_yil033c_2_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_yil033c_2_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_minimal_globalmaxod_yil033c_2_result,trial_on_minimal_globalmaxod_yil033c_2_result_2).
has_representation(trial_on_minimal_globalmaxod_yil033c_2_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_globalmaxod_yil033c_2_result_2,'results/global_max_od_growth_wmmedians.txt').
link('results/global_max_od_growth_wmmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_yil033c_2_result_2,trial_on_minimal_globalmaxod_yil033c_2_result_2_proc).
procedure(trial_on_minimal_globalmaxod_yil033c_2_result_2_proc).
has_representation(trial_on_minimal_globalmaxod_yil033c_2_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
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link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_globalmaxod_yil033c_3,trial_on_minimal_globalmaxod_yil033c_3_design).
design(trial_on_minimal_globalmaxod_yil033c_3_design).
has_proposition(trial_on_minimal_globalmaxod_yil033c_3_design,trial_on_minimal_globalmaxod_yil033c_3_factor).
factor(trial_on_minimal_globalmaxod_yil033c_3_factor).
has_representation(trial_on_minimal_globalmaxod_yil033c_3_factor,'presence or absence of yil033c').
has_input(trial_on_minimal_globalmaxod_yil033c_3,trial_on_minimal_globalmaxod_yil033c_3_data).
data(trial_on_minimal_globalmaxod_yil033c_3_data).
has_part(trial_on_minimal_globalmaxod_yil033c_3_data,'48 values for global max od of knockout on minimal medium').
has_part(trial_on_minimal_globalmaxod_yil033c_3_data,'48 values for global max od of wild type on minimal medium').
has_proposition(trial_on_minimal_globalmaxod_yil033c_3_data,'../data/').
link('../data/').
located_in(trial_on_minimal_globalmaxod_yil033c_3,'mar07-trial5_expt001-plate003').
plate('mar07-trial5_expt001-plate003').
has_proposition(trial_on_minimal_globalmaxod_yil033c_3,trial_on_minimal_globalmaxod_yil033c_3_result).
result(trial_on_minimal_globalmaxod_yil033c_3_result).
has_part(trial_on_minimal_globalmaxod_yil033c_3_result,trial_on_minimal_globalmaxod_yil033c_3_result_1).
has_representation(trial_on_minimal_globalmaxod_yil033c_3_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_globalmaxod_yil033c_3_result_1,'results/global_max_od_growth_kmedians.txt').
link('results/global_max_od_growth_kmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_yil033c_3_result_1,trial_on_minimal_globalmaxod_yil033c_3_result_1_proc).
procedure(trial_on_minimal_globalmaxod_yil033c_3_result_1_proc).
has_representation(trial_on_minimal_globalmaxod_yil033c_3_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_yil033c_3_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_minimal_globalmaxod_yil033c_3_result,trial_on_minimal_globalmaxod_yil033c_3_result_2).
has_representation(trial_on_minimal_globalmaxod_yil033c_3_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_globalmaxod_yil033c_3_result_2,'results/global_max_od_growth_wmmedians.txt').
link('results/global_max_od_growth_wmmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_yil033c_3_result_2,trial_on_minimal_globalmaxod_yil033c_3_result_2_proc).
procedure(trial_on_minimal_globalmaxod_yil033c_3_result_2_proc).
has_representation(trial_on_minimal_globalmaxod_yil033c_3_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
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link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_globalmaxod_yil033c_4,trial_on_minimal_globalmaxod_yil033c_4_design).
design(trial_on_minimal_globalmaxod_yil033c_4_design).
has_proposition(trial_on_minimal_globalmaxod_yil033c_4_design,trial_on_minimal_globalmaxod_yil033c_4_factor).
factor(trial_on_minimal_globalmaxod_yil033c_4_factor).
has_representation(trial_on_minimal_globalmaxod_yil033c_4_factor,'presence or absence of yil033c').
has_input(trial_on_minimal_globalmaxod_yil033c_4,trial_on_minimal_globalmaxod_yil033c_4_data).
data(trial_on_minimal_globalmaxod_yil033c_4_data).
has_part(trial_on_minimal_globalmaxod_yil033c_4_data,'48 values for global max od of knockout on minimal medium').
has_part(trial_on_minimal_globalmaxod_yil033c_4_data,'48 values for global max od of wild type on minimal medium').
has_proposition(trial_on_minimal_globalmaxod_yil033c_4_data,'../data/').
link('../data/').
located_in(trial_on_minimal_globalmaxod_yil033c_4,'mar07-trial6_expt001-plate003').
plate('mar07-trial6_expt001-plate003').
has_proposition(trial_on_minimal_globalmaxod_yil033c_4,trial_on_minimal_globalmaxod_yil033c_4_result).
result(trial_on_minimal_globalmaxod_yil033c_4_result).
has_part(trial_on_minimal_globalmaxod_yil033c_4_result,trial_on_minimal_globalmaxod_yil033c_4_result_1).
has_representation(trial_on_minimal_globalmaxod_yil033c_4_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_globalmaxod_yil033c_4_result_1,'results/global_max_od_growth_kmedians.txt').
link('results/global_max_od_growth_kmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_yil033c_4_result_1,trial_on_minimal_globalmaxod_yil033c_4_result_1_proc).
procedure(trial_on_minimal_globalmaxod_yil033c_4_result_1_proc).
has_representation(trial_on_minimal_globalmaxod_yil033c_4_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
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link('proceduresplotKMedians.R').
has_part(trial_on_minimal_globalmaxod_yil033c_4_result,trial_on_minimal_globalmaxod_yil033c_4_result_2).
has_representation(trial_on_minimal_globalmaxod_yil033c_4_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_globalmaxod_yil033c_4_result_2,'results/global_max_od_growth_wmmedians.txt').
link('results/global_max_od_growth_wmmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_yil033c_4_result_2,trial_on_minimal_globalmaxod_yil033c_4_result_2_proc).
procedure(trial_on_minimal_globalmaxod_yil033c_4_result_2_proc).
has_representation(trial_on_minimal_globalmaxod_yil033c_4_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_yil033c_4_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_globalmaxod_yil033c_5,trial_on_minimal_globalmaxod_yil033c_5_design).
design(trial_on_minimal_globalmaxod_yil033c_5_design).
has_proposition(trial_on_minimal_globalmaxod_yil033c_5_design,trial_on_minimal_globalmaxod_yil033c_5_factor).
factor(trial_on_minimal_globalmaxod_yil033c_5_factor).
has_representation(trial_on_minimal_globalmaxod_yil033c_5_factor,'presence or absence of yil033c').
has_input(trial_on_minimal_globalmaxod_yil033c_5,trial_on_minimal_globalmaxod_yil033c_5_data).
data(trial_on_minimal_globalmaxod_yil033c_5_data).
has_part(trial_on_minimal_globalmaxod_yil033c_5_data,'48 values for global max od of knockout on minimal medium').
has_part(trial_on_minimal_globalmaxod_yil033c_5_data,'48 values for global max od of wild type on minimal medium').
has_proposition(trial_on_minimal_globalmaxod_yil033c_5_data,'../data/').
link('../data/').
located_in(trial_on_minimal_globalmaxod_yil033c_5,'mar07-trial6_expt001-plate005').
plate('mar07-trial6_expt001-plate005').
has_proposition(trial_on_minimal_globalmaxod_yil033c_5,trial_on_minimal_globalmaxod_yil033c_5_result).
result(trial_on_minimal_globalmaxod_yil033c_5_result).
has_part(trial_on_minimal_globalmaxod_yil033c_5_result,trial_on_minimal_globalmaxod_yil033c_5_result_1).
has_representation(trial_on_minimal_globalmaxod_yil033c_5_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_globalmaxod_yil033c_5_result_1,'results/global_max_od_growth_kmedians.txt').
link('results/global_max_od_growth_kmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_yil033c_5_result_1,trial_on_minimal_globalmaxod_yil033c_5_result_1_proc).
procedure(trial_on_minimal_globalmaxod_yil033c_5_result_1_proc).
has_representation(trial_on_minimal_globalmaxod_yil033c_5_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_yil033c_5_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_minimal_globalmaxod_yil033c_5_result,trial_on_minimal_globalmaxod_yil033c_5_result_2).
has_representation(trial_on_minimal_globalmaxod_yil033c_5_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_globalmaxod_yil033c_5_result_2,'results/global_max_od_growth_wmmedians.txt').
link('results/global_max_od_growth_wmmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_yil033c_5_result_2,trial_on_minimal_globalmaxod_yil033c_5_result_2_proc).
procedure(trial_on_minimal_globalmaxod_yil033c_5_result_2_proc).
has_representation(trial_on_minimal_globalmaxod_yil033c_5_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_yil033c_5_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_globalmaxod_yil033c_6,trial_on_minimal_globalmaxod_yil033c_6_design).
design(trial_on_minimal_globalmaxod_yil033c_6_design).
has_proposition(trial_on_minimal_globalmaxod_yil033c_6_design,trial_on_minimal_globalmaxod_yil033c_6_factor).
factor(trial_on_minimal_globalmaxod_yil033c_6_factor).
has_representation(trial_on_minimal_globalmaxod_yil033c_6_factor,'presence or absence of yil033c').
has_input(trial_on_minimal_globalmaxod_yil033c_6,trial_on_minimal_globalmaxod_yil033c_6_data).
data(trial_on_minimal_globalmaxod_yil033c_6_data).
has_part(trial_on_minimal_globalmaxod_yil033c_6_data,'48 values for global max od of knockout on minimal medium').
has_part(trial_on_minimal_globalmaxod_yil033c_6_data,'48 values for global max od of wild type on minimal medium').
has_proposition(trial_on_minimal_globalmaxod_yil033c_6_data,'../data/').
link('../data/').
located_in(trial_on_minimal_globalmaxod_yil033c_6,'mar07-trial7_expt001-plate003').
plate('mar07-trial7_expt001-plate003').
has_proposition(trial_on_minimal_globalmaxod_yil033c_6,trial_on_minimal_globalmaxod_yil033c_6_result).
result(trial_on_minimal_globalmaxod_yil033c_6_result).
has_part(trial_on_minimal_globalmaxod_yil033c_6_result,trial_on_minimal_globalmaxod_yil033c_6_result_1).
has_representation(trial_on_minimal_globalmaxod_yil033c_6_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_globalmaxod_yil033c_6_result_1,'results/global_max_od_growth_kmedians.txt').
link('results/global_max_od_growth_kmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_yil033c_6_result_1,trial_on_minimal_globalmaxod_yil033c_6_result_1_proc).
procedure(trial_on_minimal_globalmaxod_yil033c_6_result_1_proc).
has_representation(trial_on_minimal_globalmaxod_yil033c_6_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_yil033c_6_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_minimal_globalmaxod_yil033c_6_result,trial_on_minimal_globalmaxod_yil033c_6_result_2).
has_representation(trial_on_minimal_globalmaxod_yil033c_6_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_globalmaxod_yil033c_6_result_2,'results/global_max_od_growth_wmmedians.txt').
link('results/global_max_od_growth_wmmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_yil033c_6_result_2,trial_on_minimal_globalmaxod_yil033c_6_result_2_proc).
procedure(trial_on_minimal_globalmaxod_yil033c_6_result_2_proc).
has_representation(trial_on_minimal_globalmaxod_yil033c_6_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_yil033c_6_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_globalmaxod_yil033c_7,trial_on_minimal_globalmaxod_yil033c_7_design).
design(trial_on_minimal_globalmaxod_yil033c_7_design).
has_proposition(trial_on_minimal_globalmaxod_yil033c_7_design,trial_on_minimal_globalmaxod_yil033c_7_factor).
factor(trial_on_minimal_globalmaxod_yil033c_7_factor).
has_representation(trial_on_minimal_globalmaxod_yil033c_7_factor,'presence or absence of yil033c').
has_input(trial_on_minimal_globalmaxod_yil033c_7,trial_on_minimal_globalmaxod_yil033c_7_data).
data(trial_on_minimal_globalmaxod_yil033c_7_data).
has_part(trial_on_minimal_globalmaxod_yil033c_7_data,'48 values for global max od of knockout on minimal medium').
has_part(trial_on_minimal_globalmaxod_yil033c_7_data,'48 values for global max od of wild type on minimal medium').
has_proposition(trial_on_minimal_globalmaxod_yil033c_7_data,'../data/').
link('../data/').
located_in(trial_on_minimal_globalmaxod_yil033c_7,'mar07-trial7_expt001-plate005').
plate('mar07-trial7_expt001-plate005').
has_proposition(trial_on_minimal_globalmaxod_yil033c_7,trial_on_minimal_globalmaxod_yil033c_7_result).
result(trial_on_minimal_globalmaxod_yil033c_7_result).
has_part(trial_on_minimal_globalmaxod_yil033c_7_result,trial_on_minimal_globalmaxod_yil033c_7_result_1).
has_representation(trial_on_minimal_globalmaxod_yil033c_7_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
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link('results/global_max_od_growth_kmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_yil033c_7_result_1,trial_on_minimal_globalmaxod_yil033c_7_result_1_proc).
procedure(trial_on_minimal_globalmaxod_yil033c_7_result_1_proc).
has_representation(trial_on_minimal_globalmaxod_yil033c_7_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_yil033c_7_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_minimal_globalmaxod_yil033c_7_result,trial_on_minimal_globalmaxod_yil033c_7_result_2).
has_representation(trial_on_minimal_globalmaxod_yil033c_7_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_globalmaxod_yil033c_7_result_2,'results/global_max_od_growth_wmmedians.txt').
link('results/global_max_od_growth_wmmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_yil033c_7_result_2,trial_on_minimal_globalmaxod_yil033c_7_result_2_proc).
procedure(trial_on_minimal_globalmaxod_yil033c_7_result_2_proc).
has_representation(trial_on_minimal_globalmaxod_yil033c_7_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
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link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_globalmaxod_yil033c_8,trial_on_minimal_globalmaxod_yil033c_8_design).
design(trial_on_minimal_globalmaxod_yil033c_8_design).
has_proposition(trial_on_minimal_globalmaxod_yil033c_8_design,trial_on_minimal_globalmaxod_yil033c_8_factor).
factor(trial_on_minimal_globalmaxod_yil033c_8_factor).
has_representation(trial_on_minimal_globalmaxod_yil033c_8_factor,'presence or absence of yil033c').
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data(trial_on_minimal_globalmaxod_yil033c_8_data).
has_part(trial_on_minimal_globalmaxod_yil033c_8_data,'48 values for global max od of knockout on minimal medium').
has_part(trial_on_minimal_globalmaxod_yil033c_8_data,'48 values for global max od of wild type on minimal medium').
has_proposition(trial_on_minimal_globalmaxod_yil033c_8_data,'../data/').
link('../data/').
located_in(trial_on_minimal_globalmaxod_yil033c_8,'mar07-trial8_expt001-plate003').
plate('mar07-trial8_expt001-plate003').
has_proposition(trial_on_minimal_globalmaxod_yil033c_8,trial_on_minimal_globalmaxod_yil033c_8_result).
result(trial_on_minimal_globalmaxod_yil033c_8_result).
has_part(trial_on_minimal_globalmaxod_yil033c_8_result,trial_on_minimal_globalmaxod_yil033c_8_result_1).
has_representation(trial_on_minimal_globalmaxod_yil033c_8_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
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link('results/global_max_od_growth_kmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_yil033c_8_result_1,trial_on_minimal_globalmaxod_yil033c_8_result_1_proc).
procedure(trial_on_minimal_globalmaxod_yil033c_8_result_1_proc).
has_representation(trial_on_minimal_globalmaxod_yil033c_8_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
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link('proceduresplotKMedians.R').
has_part(trial_on_minimal_globalmaxod_yil033c_8_result,trial_on_minimal_globalmaxod_yil033c_8_result_2).
has_representation(trial_on_minimal_globalmaxod_yil033c_8_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
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link('results/global_max_od_growth_wmmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_yil033c_8_result_2,trial_on_minimal_globalmaxod_yil033c_8_result_2_proc).
procedure(trial_on_minimal_globalmaxod_yil033c_8_result_2_proc).
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text_representation('procedure for obtaining median').
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link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_globalmaxod_yil033c_9,trial_on_minimal_globalmaxod_yil033c_9_design).
design(trial_on_minimal_globalmaxod_yil033c_9_design).
has_proposition(trial_on_minimal_globalmaxod_yil033c_9_design,trial_on_minimal_globalmaxod_yil033c_9_factor).
factor(trial_on_minimal_globalmaxod_yil033c_9_factor).
has_representation(trial_on_minimal_globalmaxod_yil033c_9_factor,'presence or absence of yil033c').
has_input(trial_on_minimal_globalmaxod_yil033c_9,trial_on_minimal_globalmaxod_yil033c_9_data).
data(trial_on_minimal_globalmaxod_yil033c_9_data).
has_part(trial_on_minimal_globalmaxod_yil033c_9_data,'48 values for global max od of knockout on minimal medium').
has_part(trial_on_minimal_globalmaxod_yil033c_9_data,'48 values for global max od of wild type on minimal medium').
has_proposition(trial_on_minimal_globalmaxod_yil033c_9_data,'../data/').
link('../data/').
located_in(trial_on_minimal_globalmaxod_yil033c_9,'mar07-trial8_expt001-plate004').
plate('mar07-trial8_expt001-plate004').
has_proposition(trial_on_minimal_globalmaxod_yil033c_9,trial_on_minimal_globalmaxod_yil033c_9_result).
result(trial_on_minimal_globalmaxod_yil033c_9_result).
has_part(trial_on_minimal_globalmaxod_yil033c_9_result,trial_on_minimal_globalmaxod_yil033c_9_result_1).
has_representation(trial_on_minimal_globalmaxod_yil033c_9_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_globalmaxod_yil033c_9_result_1,'results/global_max_od_growth_kmedians.txt').
link('results/global_max_od_growth_kmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_yil033c_9_result_1,trial_on_minimal_globalmaxod_yil033c_9_result_1_proc).
procedure(trial_on_minimal_globalmaxod_yil033c_9_result_1_proc).
has_representation(trial_on_minimal_globalmaxod_yil033c_9_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_yil033c_9_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_minimal_globalmaxod_yil033c_9_result,trial_on_minimal_globalmaxod_yil033c_9_result_2).
has_representation(trial_on_minimal_globalmaxod_yil033c_9_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_globalmaxod_yil033c_9_result_2,'results/global_max_od_growth_wmmedians.txt').
link('results/global_max_od_growth_wmmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_yil033c_9_result_2,trial_on_minimal_globalmaxod_yil033c_9_result_2_proc).
procedure(trial_on_minimal_globalmaxod_yil033c_9_result_2_proc).
has_representation(trial_on_minimal_globalmaxod_yil033c_9_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_yil033c_9_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_globalmaxod_yil033c_10,trial_on_minimal_globalmaxod_yil033c_10_design).
design(trial_on_minimal_globalmaxod_yil033c_10_design).
has_proposition(trial_on_minimal_globalmaxod_yil033c_10_design,trial_on_minimal_globalmaxod_yil033c_10_factor).
factor(trial_on_minimal_globalmaxod_yil033c_10_factor).
has_representation(trial_on_minimal_globalmaxod_yil033c_10_factor,'presence or absence of yil033c').
has_input(trial_on_minimal_globalmaxod_yil033c_10,trial_on_minimal_globalmaxod_yil033c_10_data).
data(trial_on_minimal_globalmaxod_yil033c_10_data).
has_part(trial_on_minimal_globalmaxod_yil033c_10_data,'48 values for global max od of knockout on minimal medium').
has_part(trial_on_minimal_globalmaxod_yil033c_10_data,'48 values for global max od of wild type on minimal medium').
has_proposition(trial_on_minimal_globalmaxod_yil033c_10_data,'../data/').
link('../data/').
located_in(trial_on_minimal_globalmaxod_yil033c_10,'mar07-trial8_expt001-plate005').
plate('mar07-trial8_expt001-plate005').
has_proposition(trial_on_minimal_globalmaxod_yil033c_10,trial_on_minimal_globalmaxod_yil033c_10_result).
result(trial_on_minimal_globalmaxod_yil033c_10_result).
has_part(trial_on_minimal_globalmaxod_yil033c_10_result,trial_on_minimal_globalmaxod_yil033c_10_result_1).
has_representation(trial_on_minimal_globalmaxod_yil033c_10_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_globalmaxod_yil033c_10_result_1,'results/global_max_od_growth_kmedians.txt').
link('results/global_max_od_growth_kmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_yil033c_10_result_1,trial_on_minimal_globalmaxod_yil033c_10_result_1_proc).
procedure(trial_on_minimal_globalmaxod_yil033c_10_result_1_proc).
has_representation(trial_on_minimal_globalmaxod_yil033c_10_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_yil033c_10_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_minimal_globalmaxod_yil033c_10_result,trial_on_minimal_globalmaxod_yil033c_10_result_2).
has_representation(trial_on_minimal_globalmaxod_yil033c_10_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_globalmaxod_yil033c_10_result_2,'results/global_max_od_growth_wmmedians.txt').
link('results/global_max_od_growth_wmmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_yil033c_10_result_2,trial_on_minimal_globalmaxod_yil033c_10_result_2_proc).
procedure(trial_on_minimal_globalmaxod_yil033c_10_result_2_proc).
has_representation(trial_on_minimal_globalmaxod_yil033c_10_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_yil033c_10_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_globalmaxod_yil033c_11,trial_on_minimal_globalmaxod_yil033c_11_design).
design(trial_on_minimal_globalmaxod_yil033c_11_design).
has_proposition(trial_on_minimal_globalmaxod_yil033c_11_design,trial_on_minimal_globalmaxod_yil033c_11_factor).
factor(trial_on_minimal_globalmaxod_yil033c_11_factor).
has_representation(trial_on_minimal_globalmaxod_yil033c_11_factor,'presence or absence of yil033c').
has_input(trial_on_minimal_globalmaxod_yil033c_11,trial_on_minimal_globalmaxod_yil033c_11_data).
data(trial_on_minimal_globalmaxod_yil033c_11_data).
has_part(trial_on_minimal_globalmaxod_yil033c_11_data,'48 values for global max od of knockout on minimal medium').
has_part(trial_on_minimal_globalmaxod_yil033c_11_data,'48 values for global max od of wild type on minimal medium').
has_proposition(trial_on_minimal_globalmaxod_yil033c_11_data,'../data/').
link('../data/').
located_in(trial_on_minimal_globalmaxod_yil033c_11,'mar07-trial8_expt001-plate007').
plate('mar07-trial8_expt001-plate007').
has_proposition(trial_on_minimal_globalmaxod_yil033c_11,trial_on_minimal_globalmaxod_yil033c_11_result).
result(trial_on_minimal_globalmaxod_yil033c_11_result).
has_part(trial_on_minimal_globalmaxod_yil033c_11_result,trial_on_minimal_globalmaxod_yil033c_11_result_1).
has_representation(trial_on_minimal_globalmaxod_yil033c_11_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_globalmaxod_yil033c_11_result_1,'results/global_max_od_growth_kmedians.txt').
link('results/global_max_od_growth_kmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_yil033c_11_result_1,trial_on_minimal_globalmaxod_yil033c_11_result_1_proc).
procedure(trial_on_minimal_globalmaxod_yil033c_11_result_1_proc).
has_representation(trial_on_minimal_globalmaxod_yil033c_11_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_yil033c_11_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_minimal_globalmaxod_yil033c_11_result,trial_on_minimal_globalmaxod_yil033c_11_result_2).
has_representation(trial_on_minimal_globalmaxod_yil033c_11_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_globalmaxod_yil033c_11_result_2,'results/global_max_od_growth_wmmedians.txt').
link('results/global_max_od_growth_wmmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_yil033c_11_result_2,trial_on_minimal_globalmaxod_yil033c_11_result_2_proc).
procedure(trial_on_minimal_globalmaxod_yil033c_11_result_2_proc).
has_representation(trial_on_minimal_globalmaxod_yil033c_11_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_yil033c_11_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_globalmaxod_yil033c,trial_on_minimal_globalmaxod_yil033c_results).
result(trial_on_minimal_globalmaxod_yil033c_results).
has_part(trial_on_minimal_globalmaxod_yil033c_results,trial_on_minimal_globalmaxod_yil033c_results_1).
has_representation(trial_on_minimal_globalmaxod_yil033c_results_1,'median of knockout medians missing yil033c').
text_representation('median of knockout medians missing yil033c').
has_proposition(trial_on_minimal_globalmaxod_yil033c_results_1,trial_on_minimal_globalmaxod_yil033c_results_1_proc).
procedure(trial_on_minimal_globalmaxod_yil033c_results_1_proc).
has_proposition(trial_on_minimal_globalmaxod_yil033c_results_1_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_minimal_globalmaxod_yil033c_results,trial_on_minimal_globalmaxod_yil033c_results_2).
has_representation(trial_on_minimal_globalmaxod_yil033c_results_2,'median of wild type medians').
text_representation('median of wild type medians').
has_proposition(trial_on_minimal_globalmaxod_yil033c_results_2,trial_on_minimal_globalmaxod_yil033c_results_2_proc).
procedure(trial_on_minimal_globalmaxod_yil033c_results_2_proc).
has_proposition(trial_on_minimal_globalmaxod_yil033c_results_2_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_minimal_globalmaxod_yil033c_results,trial_on_minimal_globalmaxod_yil033c_results_3).
has_representation(trial_on_minimal_globalmaxod_yil033c_results_3,'difference between trial_on_minimal_globalmaxod_yil033c_results_1 and trial_on_minimal_globalmaxod_yil033c_results_2').
text_representation('difference between trial_on_minimal_globalmaxod_yil033c_results_1 and trial_on_minimal_globalmaxod_yil033c_results_2').
has_proposition(study_on_minimal_globalmaxod,study_on_minimal_globalmaxod_result).
result(study_on_minimal_globalmaxod_result).
has_part(study_on_minimal_globalmaxod_result,study_on_minimal_globalmaxod_result_1).
has_representation(study_on_minimal_globalmaxod_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_minimal_globalmaxod_result_1,'results/wm_km_global_max_od.csv').
link('results/wm_km_global_max_od.csv').
has_proposition(study_on_minimal_globalmaxod_result_1,study_on_minimal_globalmaxod_result_1_proc).
procedure(study_on_minimal_globalmaxod_result_1_proc).
has_proposition(study_on_minimal_globalmaxod_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_minimal_globalmaxod_result,study_on_minimal_globalmaxod_result_2).
has_representation(study_on_minimal_globalmaxod_result_2,'bar graph (histogram) plotting study_on_minimal_globalmaxod_result_1').
text_representation('bar graph (histogram) plotting study_on_minimal_globalmaxod_result_1').
has_proposition(study_on_minimal_globalmaxod_result_2,'results/overlayed_global_max_od0.8.tiff').
link('results/overlayed_global_max_od0.8.tiff').
has_proposition(study_on_minimal_globalmaxod_result_2,study_on_minimal_globalmaxod_result_2_proc).
procedure(study_on_minimal_globalmaxod_result_2_proc).
has_proposition(study_on_minimal_globalmaxod_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_minimal_globalmaxod,study_on_minimal_globalmaxod_conclusion).
conclusion(study_on_minimal_globalmaxod_conclusion).
has_representation(study_on_minimal_globalmaxod_conclusion,'The knockouts reach a higher global_max_od in minimal than the wild type').
text_representation('The knockouts reach a higher global_max_od in minimal than the wild type').
has_proposition(study_on_minimal_globalmaxod_conclusion,'obtain statistical mode of study_on_minimal_globalmaxod_result_1').
procedure('obtain statistical mode of study_on_minimal_globalmaxod_result_1').
text_representation('obtain statistical mode of study_on_minimal_globalmaxod_result_1').
has_part(study_on_minimal_globalmaxod,trial_on_minimal_globalmaxod_ybr166c).
trial(trial_on_minimal_globalmaxod_ybr166c).
has_agent(trial_on_minimal_globalmaxod_ybr166c,ybr166c).
strain(ybr166c).
has_proposition(trial_on_minimal_globalmaxod_ybr166c_1,trial_on_minimal_globalmaxod_ybr166c_1_design).
design(trial_on_minimal_globalmaxod_ybr166c_1_design).
has_proposition(trial_on_minimal_globalmaxod_ybr166c_1_design,trial_on_minimal_globalmaxod_ybr166c_1_factor).
factor(trial_on_minimal_globalmaxod_ybr166c_1_factor).
has_representation(trial_on_minimal_globalmaxod_ybr166c_1_factor,'presence or absence of ybr166c').
has_input(trial_on_minimal_globalmaxod_ybr166c_1,trial_on_minimal_globalmaxod_ybr166c_1_data).
data(trial_on_minimal_globalmaxod_ybr166c_1_data).
has_part(trial_on_minimal_globalmaxod_ybr166c_1_data,'48 values for global max od of knockout on minimal medium').
has_part(trial_on_minimal_globalmaxod_ybr166c_1_data,'48 values for global max od of wild type on minimal medium').
has_proposition(trial_on_minimal_globalmaxod_ybr166c_1_data,'../data/').
link('../data/').
located_in(trial_on_minimal_globalmaxod_ybr166c_1,'nature-loop3_expt001-plate008').
plate('nature-loop3_expt001-plate008').
has_proposition(trial_on_minimal_globalmaxod_ybr166c_1,trial_on_minimal_globalmaxod_ybr166c_1_result).
result(trial_on_minimal_globalmaxod_ybr166c_1_result).
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text_representation('median of knockout on minimal').
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link('results/global_max_od_growth_kmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ybr166c_1_result_1,trial_on_minimal_globalmaxod_ybr166c_1_result_1_proc).
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text_representation('procedure for obtaining median').
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link('proceduresplotKMedians.R').
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text_representation('median of wild type on minimal').
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link('results/global_max_od_growth_wmmedians.txt').
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text_representation('procedure for obtaining median').
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link('procedures/plotWMedians.R').
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text_representation('median of knockout on minimal').
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link('results/global_max_od_growth_kmedians.txt').
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text_representation('procedure for obtaining median').
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link('proceduresplotKMedians.R').
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text_representation('median of wild type on minimal').
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text_representation('procedure for obtaining median').
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link('procedures/plotWMedians.R').
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text_representation('median of knockout on minimal').
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text_representation('procedure for obtaining median').
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link('proceduresplotKMedians.R').
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text_representation('median of wild type on minimal').
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link('procedures/plotWMedians.R').
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link('../data/').
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text_representation('median of knockout on minimal').
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link('results/global_max_od_growth_kmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ybr166c_4_result_1,trial_on_minimal_globalmaxod_ybr166c_4_result_1_proc).
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link('proceduresplotKMedians.R').
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text_representation('median of wild type on minimal').
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link('results/global_max_od_growth_wmmedians.txt').
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text_representation('procedure for obtaining median').
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link('procedures/plotWMedians.R').
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link('../data/').
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plate('nature-loop3_expt005-plate001').
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text_representation('median of knockout on minimal').
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link('results/global_max_od_growth_kmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ybr166c_5_result_1,trial_on_minimal_globalmaxod_ybr166c_5_result_1_proc).
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text_representation('procedure for obtaining median').
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link('proceduresplotKMedians.R').
has_part(trial_on_minimal_globalmaxod_ybr166c_5_result,trial_on_minimal_globalmaxod_ybr166c_5_result_2).
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text_representation('median of wild type on minimal').
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link('results/global_max_od_growth_wmmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ybr166c_5_result_2,trial_on_minimal_globalmaxod_ybr166c_5_result_2_proc).
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text_representation('procedure for obtaining median').
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link('procedures/plotWMedians.R').
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link('../data/').
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text_representation('median of knockout on minimal').
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link('results/global_max_od_growth_kmedians.txt').
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text_representation('procedure for obtaining median').
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link('proceduresplotKMedians.R').
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text_representation('median of wild type on minimal').
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link('results/global_max_od_growth_wmmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ybr166c_6_result_2,trial_on_minimal_globalmaxod_ybr166c_6_result_2_proc).
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text_representation('procedure for obtaining median').
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link('procedures/plotWMedians.R').
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factor(trial_on_minimal_globalmaxod_ybr166c_7_factor).
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link('../data/').
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plate('nature-loop2_expt001-plate001').
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text_representation('median of knockout on minimal').
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link('results/global_max_od_growth_kmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ybr166c_7_result_1,trial_on_minimal_globalmaxod_ybr166c_7_result_1_proc).
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text_representation('procedure for obtaining median').
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link('proceduresplotKMedians.R').
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text_representation('median of wild type on minimal').
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link('results/global_max_od_growth_wmmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ybr166c_7_result_2,trial_on_minimal_globalmaxod_ybr166c_7_result_2_proc).
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text_representation('procedure for obtaining median').
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link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_globalmaxod_ybr166c,trial_on_minimal_globalmaxod_ybr166c_results).
result(trial_on_minimal_globalmaxod_ybr166c_results).
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text_representation('median of knockout medians missing ybr166c').
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procedure(trial_on_minimal_globalmaxod_ybr166c_results_1_proc).
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link('procedures/remove_dupl_medians.R').
has_part(trial_on_minimal_globalmaxod_ybr166c_results,trial_on_minimal_globalmaxod_ybr166c_results_2).
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text_representation('median of wild type medians').
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procedure(trial_on_minimal_globalmaxod_ybr166c_results_2_proc).
has_proposition(trial_on_minimal_globalmaxod_ybr166c_results_2_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_minimal_globalmaxod_ybr166c_results,trial_on_minimal_globalmaxod_ybr166c_results_3).
has_representation(trial_on_minimal_globalmaxod_ybr166c_results_3,'difference between trial_on_minimal_globalmaxod_ybr166c_results_1 and trial_on_minimal_globalmaxod_ybr166c_results_2').
text_representation('difference between trial_on_minimal_globalmaxod_ybr166c_results_1 and trial_on_minimal_globalmaxod_ybr166c_results_2').
has_proposition(study_on_minimal_globalmaxod,study_on_minimal_globalmaxod_result).
result(study_on_minimal_globalmaxod_result).
has_part(study_on_minimal_globalmaxod_result,study_on_minimal_globalmaxod_result_1).
has_representation(study_on_minimal_globalmaxod_result_1,'vector of differences').
text_representation('vector of differences').
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link('results/wm_km_global_max_od.csv').
has_proposition(study_on_minimal_globalmaxod_result_1,study_on_minimal_globalmaxod_result_1_proc).
procedure(study_on_minimal_globalmaxod_result_1_proc).
has_proposition(study_on_minimal_globalmaxod_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_minimal_globalmaxod_result,study_on_minimal_globalmaxod_result_2).
has_representation(study_on_minimal_globalmaxod_result_2,'bar graph (histogram) plotting study_on_minimal_globalmaxod_result_1').
text_representation('bar graph (histogram) plotting study_on_minimal_globalmaxod_result_1').
has_proposition(study_on_minimal_globalmaxod_result_2,'results/overlayed_global_max_od0.8.tiff').
link('results/overlayed_global_max_od0.8.tiff').
has_proposition(study_on_minimal_globalmaxod_result_2,study_on_minimal_globalmaxod_result_2_proc).
procedure(study_on_minimal_globalmaxod_result_2_proc).
has_proposition(study_on_minimal_globalmaxod_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_minimal_globalmaxod,study_on_minimal_globalmaxod_conclusion).
conclusion(study_on_minimal_globalmaxod_conclusion).
has_representation(study_on_minimal_globalmaxod_conclusion,'The knockouts reach a higher global_max_od in minimal than the wild type').
text_representation('The knockouts reach a higher global_max_od in minimal than the wild type').
has_proposition(study_on_minimal_globalmaxod_conclusion,'obtain statistical mode of study_on_minimal_globalmaxod_result_1').
procedure('obtain statistical mode of study_on_minimal_globalmaxod_result_1').
text_representation('obtain statistical mode of study_on_minimal_globalmaxod_result_1').
has_part(study_on_minimal_globalmaxod,trial_on_minimal_globalmaxod_ydl168w).
trial(trial_on_minimal_globalmaxod_ydl168w).
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strain(ydl168w).
has_proposition(trial_on_minimal_globalmaxod_ydl168w_1,trial_on_minimal_globalmaxod_ydl168w_1_design).
design(trial_on_minimal_globalmaxod_ydl168w_1_design).
has_proposition(trial_on_minimal_globalmaxod_ydl168w_1_design,trial_on_minimal_globalmaxod_ydl168w_1_factor).
factor(trial_on_minimal_globalmaxod_ydl168w_1_factor).
has_representation(trial_on_minimal_globalmaxod_ydl168w_1_factor,'presence or absence of ydl168w').
has_input(trial_on_minimal_globalmaxod_ydl168w_1,trial_on_minimal_globalmaxod_ydl168w_1_data).
data(trial_on_minimal_globalmaxod_ydl168w_1_data).
has_part(trial_on_minimal_globalmaxod_ydl168w_1_data,'48 values for global max od of knockout on minimal medium').
has_part(trial_on_minimal_globalmaxod_ydl168w_1_data,'48 values for global max od of wild type on minimal medium').
has_proposition(trial_on_minimal_globalmaxod_ydl168w_1_data,'../data/').
link('../data/').
located_in(trial_on_minimal_globalmaxod_ydl168w_1,'feb07-single1_expt001-plate001').
plate('feb07-single1_expt001-plate001').
has_proposition(trial_on_minimal_globalmaxod_ydl168w_1,trial_on_minimal_globalmaxod_ydl168w_1_result).
result(trial_on_minimal_globalmaxod_ydl168w_1_result).
has_part(trial_on_minimal_globalmaxod_ydl168w_1_result,trial_on_minimal_globalmaxod_ydl168w_1_result_1).
has_representation(trial_on_minimal_globalmaxod_ydl168w_1_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_globalmaxod_ydl168w_1_result_1,'results/global_max_od_growth_kmedians.txt').
link('results/global_max_od_growth_kmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ydl168w_1_result_1,trial_on_minimal_globalmaxod_ydl168w_1_result_1_proc).
procedure(trial_on_minimal_globalmaxod_ydl168w_1_result_1_proc).
has_representation(trial_on_minimal_globalmaxod_ydl168w_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_ydl168w_1_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_minimal_globalmaxod_ydl168w_1_result,trial_on_minimal_globalmaxod_ydl168w_1_result_2).
has_representation(trial_on_minimal_globalmaxod_ydl168w_1_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_globalmaxod_ydl168w_1_result_2,'results/global_max_od_growth_wmmedians.txt').
link('results/global_max_od_growth_wmmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ydl168w_1_result_2,trial_on_minimal_globalmaxod_ydl168w_1_result_2_proc).
procedure(trial_on_minimal_globalmaxod_ydl168w_1_result_2_proc).
has_representation(trial_on_minimal_globalmaxod_ydl168w_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_ydl168w_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_globalmaxod_ydl168w_2,trial_on_minimal_globalmaxod_ydl168w_2_design).
design(trial_on_minimal_globalmaxod_ydl168w_2_design).
has_proposition(trial_on_minimal_globalmaxod_ydl168w_2_design,trial_on_minimal_globalmaxod_ydl168w_2_factor).
factor(trial_on_minimal_globalmaxod_ydl168w_2_factor).
has_representation(trial_on_minimal_globalmaxod_ydl168w_2_factor,'presence or absence of ydl168w').
has_input(trial_on_minimal_globalmaxod_ydl168w_2,trial_on_minimal_globalmaxod_ydl168w_2_data).
data(trial_on_minimal_globalmaxod_ydl168w_2_data).
has_part(trial_on_minimal_globalmaxod_ydl168w_2_data,'48 values for global max od of knockout on minimal medium').
has_part(trial_on_minimal_globalmaxod_ydl168w_2_data,'48 values for global max od of wild type on minimal medium').
has_proposition(trial_on_minimal_globalmaxod_ydl168w_2_data,'../data/').
link('../data/').
located_in(trial_on_minimal_globalmaxod_ydl168w_2,'jan07-single3_expt001-plate001').
plate('jan07-single3_expt001-plate001').
has_proposition(trial_on_minimal_globalmaxod_ydl168w_2,trial_on_minimal_globalmaxod_ydl168w_2_result).
result(trial_on_minimal_globalmaxod_ydl168w_2_result).
has_part(trial_on_minimal_globalmaxod_ydl168w_2_result,trial_on_minimal_globalmaxod_ydl168w_2_result_1).
has_representation(trial_on_minimal_globalmaxod_ydl168w_2_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_globalmaxod_ydl168w_2_result_1,'results/global_max_od_growth_kmedians.txt').
link('results/global_max_od_growth_kmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ydl168w_2_result_1,trial_on_minimal_globalmaxod_ydl168w_2_result_1_proc).
procedure(trial_on_minimal_globalmaxod_ydl168w_2_result_1_proc).
has_representation(trial_on_minimal_globalmaxod_ydl168w_2_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_ydl168w_2_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_minimal_globalmaxod_ydl168w_2_result,trial_on_minimal_globalmaxod_ydl168w_2_result_2).
has_representation(trial_on_minimal_globalmaxod_ydl168w_2_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_globalmaxod_ydl168w_2_result_2,'results/global_max_od_growth_wmmedians.txt').
link('results/global_max_od_growth_wmmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ydl168w_2_result_2,trial_on_minimal_globalmaxod_ydl168w_2_result_2_proc).
procedure(trial_on_minimal_globalmaxod_ydl168w_2_result_2_proc).
has_representation(trial_on_minimal_globalmaxod_ydl168w_2_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_ydl168w_2_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_globalmaxod_ydl168w_3,trial_on_minimal_globalmaxod_ydl168w_3_design).
design(trial_on_minimal_globalmaxod_ydl168w_3_design).
has_proposition(trial_on_minimal_globalmaxod_ydl168w_3_design,trial_on_minimal_globalmaxod_ydl168w_3_factor).
factor(trial_on_minimal_globalmaxod_ydl168w_3_factor).
has_representation(trial_on_minimal_globalmaxod_ydl168w_3_factor,'presence or absence of ydl168w').
has_input(trial_on_minimal_globalmaxod_ydl168w_3,trial_on_minimal_globalmaxod_ydl168w_3_data).
data(trial_on_minimal_globalmaxod_ydl168w_3_data).
has_part(trial_on_minimal_globalmaxod_ydl168w_3_data,'48 values for global max od of knockout on minimal medium').
has_part(trial_on_minimal_globalmaxod_ydl168w_3_data,'48 values for global max od of wild type on minimal medium').
has_proposition(trial_on_minimal_globalmaxod_ydl168w_3_data,'../data/').
link('../data/').
located_in(trial_on_minimal_globalmaxod_ydl168w_3,'jan07-trial1_expt001-plate001').
plate('jan07-trial1_expt001-plate001').
has_proposition(trial_on_minimal_globalmaxod_ydl168w_3,trial_on_minimal_globalmaxod_ydl168w_3_result).
result(trial_on_minimal_globalmaxod_ydl168w_3_result).
has_part(trial_on_minimal_globalmaxod_ydl168w_3_result,trial_on_minimal_globalmaxod_ydl168w_3_result_1).
has_representation(trial_on_minimal_globalmaxod_ydl168w_3_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_globalmaxod_ydl168w_3_result_1,'results/global_max_od_growth_kmedians.txt').
link('results/global_max_od_growth_kmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ydl168w_3_result_1,trial_on_minimal_globalmaxod_ydl168w_3_result_1_proc).
procedure(trial_on_minimal_globalmaxod_ydl168w_3_result_1_proc).
has_representation(trial_on_minimal_globalmaxod_ydl168w_3_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_ydl168w_3_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_minimal_globalmaxod_ydl168w_3_result,trial_on_minimal_globalmaxod_ydl168w_3_result_2).
has_representation(trial_on_minimal_globalmaxod_ydl168w_3_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_globalmaxod_ydl168w_3_result_2,'results/global_max_od_growth_wmmedians.txt').
link('results/global_max_od_growth_wmmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ydl168w_3_result_2,trial_on_minimal_globalmaxod_ydl168w_3_result_2_proc).
procedure(trial_on_minimal_globalmaxod_ydl168w_3_result_2_proc).
has_representation(trial_on_minimal_globalmaxod_ydl168w_3_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_ydl168w_3_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_globalmaxod_ydl168w_4,trial_on_minimal_globalmaxod_ydl168w_4_design).
design(trial_on_minimal_globalmaxod_ydl168w_4_design).
has_proposition(trial_on_minimal_globalmaxod_ydl168w_4_design,trial_on_minimal_globalmaxod_ydl168w_4_factor).
factor(trial_on_minimal_globalmaxod_ydl168w_4_factor).
has_representation(trial_on_minimal_globalmaxod_ydl168w_4_factor,'presence or absence of ydl168w').
has_input(trial_on_minimal_globalmaxod_ydl168w_4,trial_on_minimal_globalmaxod_ydl168w_4_data).
data(trial_on_minimal_globalmaxod_ydl168w_4_data).
has_part(trial_on_minimal_globalmaxod_ydl168w_4_data,'48 values for global max od of knockout on minimal medium').
has_part(trial_on_minimal_globalmaxod_ydl168w_4_data,'48 values for global max od of wild type on minimal medium').
has_proposition(trial_on_minimal_globalmaxod_ydl168w_4_data,'../data/').
link('../data/').
located_in(trial_on_minimal_globalmaxod_ydl168w_4,'jan07-trial1_expt001-plate008').
plate('jan07-trial1_expt001-plate008').
has_proposition(trial_on_minimal_globalmaxod_ydl168w_4,trial_on_minimal_globalmaxod_ydl168w_4_result).
result(trial_on_minimal_globalmaxod_ydl168w_4_result).
has_part(trial_on_minimal_globalmaxod_ydl168w_4_result,trial_on_minimal_globalmaxod_ydl168w_4_result_1).
has_representation(trial_on_minimal_globalmaxod_ydl168w_4_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_globalmaxod_ydl168w_4_result_1,'results/global_max_od_growth_kmedians.txt').
link('results/global_max_od_growth_kmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ydl168w_4_result_1,trial_on_minimal_globalmaxod_ydl168w_4_result_1_proc).
procedure(trial_on_minimal_globalmaxod_ydl168w_4_result_1_proc).
has_representation(trial_on_minimal_globalmaxod_ydl168w_4_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_ydl168w_4_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_minimal_globalmaxod_ydl168w_4_result,trial_on_minimal_globalmaxod_ydl168w_4_result_2).
has_representation(trial_on_minimal_globalmaxod_ydl168w_4_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_globalmaxod_ydl168w_4_result_2,'results/global_max_od_growth_wmmedians.txt').
link('results/global_max_od_growth_wmmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ydl168w_4_result_2,trial_on_minimal_globalmaxod_ydl168w_4_result_2_proc).
procedure(trial_on_minimal_globalmaxod_ydl168w_4_result_2_proc).
has_representation(trial_on_minimal_globalmaxod_ydl168w_4_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_ydl168w_4_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_globalmaxod_ydl168w_5,trial_on_minimal_globalmaxod_ydl168w_5_design).
design(trial_on_minimal_globalmaxod_ydl168w_5_design).
has_proposition(trial_on_minimal_globalmaxod_ydl168w_5_design,trial_on_minimal_globalmaxod_ydl168w_5_factor).
factor(trial_on_minimal_globalmaxod_ydl168w_5_factor).
has_representation(trial_on_minimal_globalmaxod_ydl168w_5_factor,'presence or absence of ydl168w').
has_input(trial_on_minimal_globalmaxod_ydl168w_5,trial_on_minimal_globalmaxod_ydl168w_5_data).
data(trial_on_minimal_globalmaxod_ydl168w_5_data).
has_part(trial_on_minimal_globalmaxod_ydl168w_5_data,'48 values for global max od of knockout on minimal medium').
has_part(trial_on_minimal_globalmaxod_ydl168w_5_data,'48 values for global max od of wild type on minimal medium').
has_proposition(trial_on_minimal_globalmaxod_ydl168w_5_data,'../data/').
link('../data/').
located_in(trial_on_minimal_globalmaxod_ydl168w_5,'jan07-trial2_expt001-plate003').
plate('jan07-trial2_expt001-plate003').
has_proposition(trial_on_minimal_globalmaxod_ydl168w_5,trial_on_minimal_globalmaxod_ydl168w_5_result).
result(trial_on_minimal_globalmaxod_ydl168w_5_result).
has_part(trial_on_minimal_globalmaxod_ydl168w_5_result,trial_on_minimal_globalmaxod_ydl168w_5_result_1).
has_representation(trial_on_minimal_globalmaxod_ydl168w_5_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_globalmaxod_ydl168w_5_result_1,'results/global_max_od_growth_kmedians.txt').
link('results/global_max_od_growth_kmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ydl168w_5_result_1,trial_on_minimal_globalmaxod_ydl168w_5_result_1_proc).
procedure(trial_on_minimal_globalmaxod_ydl168w_5_result_1_proc).
has_representation(trial_on_minimal_globalmaxod_ydl168w_5_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_ydl168w_5_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_minimal_globalmaxod_ydl168w_5_result,trial_on_minimal_globalmaxod_ydl168w_5_result_2).
has_representation(trial_on_minimal_globalmaxod_ydl168w_5_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_globalmaxod_ydl168w_5_result_2,'results/global_max_od_growth_wmmedians.txt').
link('results/global_max_od_growth_wmmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ydl168w_5_result_2,trial_on_minimal_globalmaxod_ydl168w_5_result_2_proc).
procedure(trial_on_minimal_globalmaxod_ydl168w_5_result_2_proc).
has_representation(trial_on_minimal_globalmaxod_ydl168w_5_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_ydl168w_5_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_globalmaxod_ydl168w_6,trial_on_minimal_globalmaxod_ydl168w_6_design).
design(trial_on_minimal_globalmaxod_ydl168w_6_design).
has_proposition(trial_on_minimal_globalmaxod_ydl168w_6_design,trial_on_minimal_globalmaxod_ydl168w_6_factor).
factor(trial_on_minimal_globalmaxod_ydl168w_6_factor).
has_representation(trial_on_minimal_globalmaxod_ydl168w_6_factor,'presence or absence of ydl168w').
has_input(trial_on_minimal_globalmaxod_ydl168w_6,trial_on_minimal_globalmaxod_ydl168w_6_data).
data(trial_on_minimal_globalmaxod_ydl168w_6_data).
has_part(trial_on_minimal_globalmaxod_ydl168w_6_data,'48 values for global max od of knockout on minimal medium').
has_part(trial_on_minimal_globalmaxod_ydl168w_6_data,'48 values for global max od of wild type on minimal medium').
has_proposition(trial_on_minimal_globalmaxod_ydl168w_6_data,'../data/').
link('../data/').
located_in(trial_on_minimal_globalmaxod_ydl168w_6,'jan07-trial2_expt001-plate005').
plate('jan07-trial2_expt001-plate005').
has_proposition(trial_on_minimal_globalmaxod_ydl168w_6,trial_on_minimal_globalmaxod_ydl168w_6_result).
result(trial_on_minimal_globalmaxod_ydl168w_6_result).
has_part(trial_on_minimal_globalmaxod_ydl168w_6_result,trial_on_minimal_globalmaxod_ydl168w_6_result_1).
has_representation(trial_on_minimal_globalmaxod_ydl168w_6_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_globalmaxod_ydl168w_6_result_1,'results/global_max_od_growth_kmedians.txt').
link('results/global_max_od_growth_kmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ydl168w_6_result_1,trial_on_minimal_globalmaxod_ydl168w_6_result_1_proc).
procedure(trial_on_minimal_globalmaxod_ydl168w_6_result_1_proc).
has_representation(trial_on_minimal_globalmaxod_ydl168w_6_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_ydl168w_6_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_minimal_globalmaxod_ydl168w_6_result,trial_on_minimal_globalmaxod_ydl168w_6_result_2).
has_representation(trial_on_minimal_globalmaxod_ydl168w_6_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_globalmaxod_ydl168w_6_result_2,'results/global_max_od_growth_wmmedians.txt').
link('results/global_max_od_growth_wmmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ydl168w_6_result_2,trial_on_minimal_globalmaxod_ydl168w_6_result_2_proc).
procedure(trial_on_minimal_globalmaxod_ydl168w_6_result_2_proc).
has_representation(trial_on_minimal_globalmaxod_ydl168w_6_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_ydl168w_6_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_globalmaxod_ydl168w,trial_on_minimal_globalmaxod_ydl168w_results).
result(trial_on_minimal_globalmaxod_ydl168w_results).
has_part(trial_on_minimal_globalmaxod_ydl168w_results,trial_on_minimal_globalmaxod_ydl168w_results_1).
has_representation(trial_on_minimal_globalmaxod_ydl168w_results_1,'median of knockout medians missing ydl168w').
text_representation('median of knockout medians missing ydl168w').
has_proposition(trial_on_minimal_globalmaxod_ydl168w_results_1,trial_on_minimal_globalmaxod_ydl168w_results_1_proc).
procedure(trial_on_minimal_globalmaxod_ydl168w_results_1_proc).
has_proposition(trial_on_minimal_globalmaxod_ydl168w_results_1_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_minimal_globalmaxod_ydl168w_results,trial_on_minimal_globalmaxod_ydl168w_results_2).
has_representation(trial_on_minimal_globalmaxod_ydl168w_results_2,'median of wild type medians').
text_representation('median of wild type medians').
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text_representation('median of knockout on minimal').
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link('proceduresplotKMedians.R').
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text_representation('median of wild type on minimal').
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link('procedures/plotWMedians.R').
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text_representation('median of knockout on minimal').
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text_representation('median of wild type on minimal').
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text_representation('median of knockout on minimal').
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link('results/global_max_od_growth_kmedians.txt').
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link('proceduresplotKMedians.R').
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text_representation('median of wild type on minimal').
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text_representation('median of knockout on minimal').
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link('proceduresplotKMedians.R').
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text_representation('median of wild type on minimal').
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link('procedures/plotWMedians.R').
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text_representation('median of knockout on minimal').
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text_representation('procedure for obtaining median').
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link('proceduresplotKMedians.R').
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text_representation('median of wild type on minimal').
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link('procedures/plotWMedians.R').
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text_representation('median of knockout on minimal').
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link('results/global_max_od_growth_kmedians.txt').
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text_representation('procedure for obtaining median').
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link('proceduresplotKMedians.R').
has_part(trial_on_minimal_globalmaxod_ylr209c_6_result,trial_on_minimal_globalmaxod_ylr209c_6_result_2).
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text_representation('median of wild type on minimal').
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link('results/global_max_od_growth_wmmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ylr209c_6_result_2,trial_on_minimal_globalmaxod_ylr209c_6_result_2_proc).
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text_representation('procedure for obtaining median').
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link('procedures/plotWMedians.R').
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data(trial_on_minimal_globalmaxod_ylr209c_7_data).
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link('../data/').
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plate('mar07-trial6_expt001-plate002').
has_proposition(trial_on_minimal_globalmaxod_ylr209c_7,trial_on_minimal_globalmaxod_ylr209c_7_result).
result(trial_on_minimal_globalmaxod_ylr209c_7_result).
has_part(trial_on_minimal_globalmaxod_ylr209c_7_result,trial_on_minimal_globalmaxod_ylr209c_7_result_1).
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text_representation('median of knockout on minimal').
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link('results/global_max_od_growth_kmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ylr209c_7_result_1,trial_on_minimal_globalmaxod_ylr209c_7_result_1_proc).
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text_representation('procedure for obtaining median').
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link('proceduresplotKMedians.R').
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text_representation('median of wild type on minimal').
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link('results/global_max_od_growth_wmmedians.txt').
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link('procedures/plotWMedians.R').
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text_representation('median of wild type on minimal').
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link('procedures/plotWMedians.R').
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text_representation('median of knockout on minimal').
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link('results/global_max_od_growth_kmedians.txt').
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link('proceduresplotKMedians.R').
has_part(trial_on_minimal_globalmaxod_ylr209c_9_result,trial_on_minimal_globalmaxod_ylr209c_9_result_2).
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text_representation('median of wild type on minimal').
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link('results/global_max_od_growth_wmmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ylr209c_9_result_2,trial_on_minimal_globalmaxod_ylr209c_9_result_2_proc).
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link('procedures/plotWMedians.R').
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plate('mar07-trial6_expt001-plate007').
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text_representation('median of knockout on minimal').
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link('results/global_max_od_growth_kmedians.txt').
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text_representation('procedure for obtaining median').
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link('proceduresplotKMedians.R').
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text_representation('median of wild type on minimal').
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link('results/global_max_od_growth_wmmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ylr209c_10_result_2,trial_on_minimal_globalmaxod_ylr209c_10_result_2_proc).
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text_representation('procedure for obtaining median').
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link('procedures/plotWMedians.R').
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design(trial_on_minimal_globalmaxod_ylr209c_11_design).
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factor(trial_on_minimal_globalmaxod_ylr209c_11_factor).
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data(trial_on_minimal_globalmaxod_ylr209c_11_data).
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has_proposition(trial_on_minimal_globalmaxod_ylr209c_11_data,'../data/').
link('../data/').
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plate('mar07-trial6_expt001-plate008').
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result(trial_on_minimal_globalmaxod_ylr209c_11_result).
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text_representation('median of knockout on minimal').
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link('results/global_max_od_growth_kmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ylr209c_11_result_1,trial_on_minimal_globalmaxod_ylr209c_11_result_1_proc).
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text_representation('procedure for obtaining median').
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link('proceduresplotKMedians.R').
has_part(trial_on_minimal_globalmaxod_ylr209c_11_result,trial_on_minimal_globalmaxod_ylr209c_11_result_2).
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text_representation('median of wild type on minimal').
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link('results/global_max_od_growth_wmmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ylr209c_11_result_2,trial_on_minimal_globalmaxod_ylr209c_11_result_2_proc).
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text_representation('procedure for obtaining median').
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link('procedures/plotWMedians.R').
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factor(trial_on_minimal_globalmaxod_ylr209c_12_factor).
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data(trial_on_minimal_globalmaxod_ylr209c_12_data).
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link('../data/').
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plate('mar07-trial9_expt001-plate005').
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text_representation('median of knockout on minimal').
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link('results/global_max_od_growth_kmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ylr209c_12_result_1,trial_on_minimal_globalmaxod_ylr209c_12_result_1_proc).
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text_representation('procedure for obtaining median').
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link('proceduresplotKMedians.R').
has_part(trial_on_minimal_globalmaxod_ylr209c_12_result,trial_on_minimal_globalmaxod_ylr209c_12_result_2).
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text_representation('median of wild type on minimal').
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link('results/global_max_od_growth_wmmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ylr209c_12_result_2,trial_on_minimal_globalmaxod_ylr209c_12_result_2_proc).
procedure(trial_on_minimal_globalmaxod_ylr209c_12_result_2_proc).
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text_representation('procedure for obtaining median').
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link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_globalmaxod_ylr209c,trial_on_minimal_globalmaxod_ylr209c_results).
result(trial_on_minimal_globalmaxod_ylr209c_results).
has_part(trial_on_minimal_globalmaxod_ylr209c_results,trial_on_minimal_globalmaxod_ylr209c_results_1).
has_representation(trial_on_minimal_globalmaxod_ylr209c_results_1,'median of knockout medians missing ylr209c').
text_representation('median of knockout medians missing ylr209c').
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procedure(trial_on_minimal_globalmaxod_ylr209c_results_1_proc).
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link('procedures/remove_dupl_medians.R').
has_part(trial_on_minimal_globalmaxod_ylr209c_results,trial_on_minimal_globalmaxod_ylr209c_results_2).
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text_representation('median of wild type medians').
has_proposition(trial_on_minimal_globalmaxod_ylr209c_results_2,trial_on_minimal_globalmaxod_ylr209c_results_2_proc).
procedure(trial_on_minimal_globalmaxod_ylr209c_results_2_proc).
has_proposition(trial_on_minimal_globalmaxod_ylr209c_results_2_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_minimal_globalmaxod_ylr209c_results,trial_on_minimal_globalmaxod_ylr209c_results_3).
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text_representation('difference between trial_on_minimal_globalmaxod_ylr209c_results_1 and trial_on_minimal_globalmaxod_ylr209c_results_2').
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result(study_on_minimal_globalmaxod_result).
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has_representation(study_on_minimal_globalmaxod_result_1,'vector of differences').
text_representation('vector of differences').
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link('results/wm_km_global_max_od.csv').
has_proposition(study_on_minimal_globalmaxod_result_1,study_on_minimal_globalmaxod_result_1_proc).
procedure(study_on_minimal_globalmaxod_result_1_proc).
has_proposition(study_on_minimal_globalmaxod_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_minimal_globalmaxod_result,study_on_minimal_globalmaxod_result_2).
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text_representation('bar graph (histogram) plotting study_on_minimal_globalmaxod_result_1').
has_proposition(study_on_minimal_globalmaxod_result_2,'results/overlayed_global_max_od0.8.tiff').
link('results/overlayed_global_max_od0.8.tiff').
has_proposition(study_on_minimal_globalmaxod_result_2,study_on_minimal_globalmaxod_result_2_proc).
procedure(study_on_minimal_globalmaxod_result_2_proc).
has_proposition(study_on_minimal_globalmaxod_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_minimal_globalmaxod,study_on_minimal_globalmaxod_conclusion).
conclusion(study_on_minimal_globalmaxod_conclusion).
has_representation(study_on_minimal_globalmaxod_conclusion,'The knockouts reach a higher global_max_od in minimal than the wild type').
text_representation('The knockouts reach a higher global_max_od in minimal than the wild type').
has_proposition(study_on_minimal_globalmaxod_conclusion,'obtain statistical mode of study_on_minimal_globalmaxod_result_1').
procedure('obtain statistical mode of study_on_minimal_globalmaxod_result_1').
text_representation('obtain statistical mode of study_on_minimal_globalmaxod_result_1').
has_part(study_on_minimal_globalmaxod,trial_on_minimal_globalmaxod_yjl060w).
trial(trial_on_minimal_globalmaxod_yjl060w).
has_agent(trial_on_minimal_globalmaxod_yjl060w,yjl060w).
strain(yjl060w).
has_proposition(trial_on_minimal_globalmaxod_yjl060w_1,trial_on_minimal_globalmaxod_yjl060w_1_design).
design(trial_on_minimal_globalmaxod_yjl060w_1_design).
has_proposition(trial_on_minimal_globalmaxod_yjl060w_1_design,trial_on_minimal_globalmaxod_yjl060w_1_factor).
factor(trial_on_minimal_globalmaxod_yjl060w_1_factor).
has_representation(trial_on_minimal_globalmaxod_yjl060w_1_factor,'presence or absence of yjl060w').
has_input(trial_on_minimal_globalmaxod_yjl060w_1,trial_on_minimal_globalmaxod_yjl060w_1_data).
data(trial_on_minimal_globalmaxod_yjl060w_1_data).
has_part(trial_on_minimal_globalmaxod_yjl060w_1_data,'48 values for global max od of knockout on minimal medium').
has_part(trial_on_minimal_globalmaxod_yjl060w_1_data,'48 values for global max od of wild type on minimal medium').
has_proposition(trial_on_minimal_globalmaxod_yjl060w_1_data,'../data/').
link('../data/').
located_in(trial_on_minimal_globalmaxod_yjl060w_1,'jan07-lyss1_expt001-plate004').
plate('jan07-lyss1_expt001-plate004').
has_proposition(trial_on_minimal_globalmaxod_yjl060w_1,trial_on_minimal_globalmaxod_yjl060w_1_result).
result(trial_on_minimal_globalmaxod_yjl060w_1_result).
has_part(trial_on_minimal_globalmaxod_yjl060w_1_result,trial_on_minimal_globalmaxod_yjl060w_1_result_1).
has_representation(trial_on_minimal_globalmaxod_yjl060w_1_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_globalmaxod_yjl060w_1_result_1,'results/global_max_od_growth_kmedians.txt').
link('results/global_max_od_growth_kmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_yjl060w_1_result_1,trial_on_minimal_globalmaxod_yjl060w_1_result_1_proc).
procedure(trial_on_minimal_globalmaxod_yjl060w_1_result_1_proc).
has_representation(trial_on_minimal_globalmaxod_yjl060w_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_yjl060w_1_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_minimal_globalmaxod_yjl060w_1_result,trial_on_minimal_globalmaxod_yjl060w_1_result_2).
has_representation(trial_on_minimal_globalmaxod_yjl060w_1_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_globalmaxod_yjl060w_1_result_2,'results/global_max_od_growth_wmmedians.txt').
link('results/global_max_od_growth_wmmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_yjl060w_1_result_2,trial_on_minimal_globalmaxod_yjl060w_1_result_2_proc).
procedure(trial_on_minimal_globalmaxod_yjl060w_1_result_2_proc).
has_representation(trial_on_minimal_globalmaxod_yjl060w_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_yjl060w_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_globalmaxod_yjl060w_2,trial_on_minimal_globalmaxod_yjl060w_2_design).
design(trial_on_minimal_globalmaxod_yjl060w_2_design).
has_proposition(trial_on_minimal_globalmaxod_yjl060w_2_design,trial_on_minimal_globalmaxod_yjl060w_2_factor).
factor(trial_on_minimal_globalmaxod_yjl060w_2_factor).
has_representation(trial_on_minimal_globalmaxod_yjl060w_2_factor,'presence or absence of yjl060w').
has_input(trial_on_minimal_globalmaxod_yjl060w_2,trial_on_minimal_globalmaxod_yjl060w_2_data).
data(trial_on_minimal_globalmaxod_yjl060w_2_data).
has_part(trial_on_minimal_globalmaxod_yjl060w_2_data,'48 values for global max od of knockout on minimal medium').
has_part(trial_on_minimal_globalmaxod_yjl060w_2_data,'48 values for global max od of wild type on minimal medium').
has_proposition(trial_on_minimal_globalmaxod_yjl060w_2_data,'../data/').
link('../data/').
located_in(trial_on_minimal_globalmaxod_yjl060w_2,'jan07-lyss1_expt001-plate005').
plate('jan07-lyss1_expt001-plate005').
has_proposition(trial_on_minimal_globalmaxod_yjl060w_2,trial_on_minimal_globalmaxod_yjl060w_2_result).
result(trial_on_minimal_globalmaxod_yjl060w_2_result).
has_part(trial_on_minimal_globalmaxod_yjl060w_2_result,trial_on_minimal_globalmaxod_yjl060w_2_result_1).
has_representation(trial_on_minimal_globalmaxod_yjl060w_2_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_globalmaxod_yjl060w_2_result_1,'results/global_max_od_growth_kmedians.txt').
link('results/global_max_od_growth_kmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_yjl060w_2_result_1,trial_on_minimal_globalmaxod_yjl060w_2_result_1_proc).
procedure(trial_on_minimal_globalmaxod_yjl060w_2_result_1_proc).
has_representation(trial_on_minimal_globalmaxod_yjl060w_2_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_yjl060w_2_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_minimal_globalmaxod_yjl060w_2_result,trial_on_minimal_globalmaxod_yjl060w_2_result_2).
has_representation(trial_on_minimal_globalmaxod_yjl060w_2_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_globalmaxod_yjl060w_2_result_2,'results/global_max_od_growth_wmmedians.txt').
link('results/global_max_od_growth_wmmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_yjl060w_2_result_2,trial_on_minimal_globalmaxod_yjl060w_2_result_2_proc).
procedure(trial_on_minimal_globalmaxod_yjl060w_2_result_2_proc).
has_representation(trial_on_minimal_globalmaxod_yjl060w_2_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_yjl060w_2_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_globalmaxod_yjl060w_3,trial_on_minimal_globalmaxod_yjl060w_3_design).
design(trial_on_minimal_globalmaxod_yjl060w_3_design).
has_proposition(trial_on_minimal_globalmaxod_yjl060w_3_design,trial_on_minimal_globalmaxod_yjl060w_3_factor).
factor(trial_on_minimal_globalmaxod_yjl060w_3_factor).
has_representation(trial_on_minimal_globalmaxod_yjl060w_3_factor,'presence or absence of yjl060w').
has_input(trial_on_minimal_globalmaxod_yjl060w_3,trial_on_minimal_globalmaxod_yjl060w_3_data).
data(trial_on_minimal_globalmaxod_yjl060w_3_data).
has_part(trial_on_minimal_globalmaxod_yjl060w_3_data,'48 values for global max od of knockout on minimal medium').
has_part(trial_on_minimal_globalmaxod_yjl060w_3_data,'48 values for global max od of wild type on minimal medium').
has_proposition(trial_on_minimal_globalmaxod_yjl060w_3_data,'../data/').
link('../data/').
located_in(trial_on_minimal_globalmaxod_yjl060w_3,'jan07-lyss1_expt001-plate006').
plate('jan07-lyss1_expt001-plate006').
has_proposition(trial_on_minimal_globalmaxod_yjl060w_3,trial_on_minimal_globalmaxod_yjl060w_3_result).
result(trial_on_minimal_globalmaxod_yjl060w_3_result).
has_part(trial_on_minimal_globalmaxod_yjl060w_3_result,trial_on_minimal_globalmaxod_yjl060w_3_result_1).
has_representation(trial_on_minimal_globalmaxod_yjl060w_3_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_globalmaxod_yjl060w_3_result_1,'results/global_max_od_growth_kmedians.txt').
link('results/global_max_od_growth_kmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_yjl060w_3_result_1,trial_on_minimal_globalmaxod_yjl060w_3_result_1_proc).
procedure(trial_on_minimal_globalmaxod_yjl060w_3_result_1_proc).
has_representation(trial_on_minimal_globalmaxod_yjl060w_3_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_yjl060w_3_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_minimal_globalmaxod_yjl060w_3_result,trial_on_minimal_globalmaxod_yjl060w_3_result_2).
has_representation(trial_on_minimal_globalmaxod_yjl060w_3_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_globalmaxod_yjl060w_3_result_2,'results/global_max_od_growth_wmmedians.txt').
link('results/global_max_od_growth_wmmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_yjl060w_3_result_2,trial_on_minimal_globalmaxod_yjl060w_3_result_2_proc).
procedure(trial_on_minimal_globalmaxod_yjl060w_3_result_2_proc).
has_representation(trial_on_minimal_globalmaxod_yjl060w_3_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_yjl060w_3_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_globalmaxod_yjl060w,trial_on_minimal_globalmaxod_yjl060w_results).
result(trial_on_minimal_globalmaxod_yjl060w_results).
has_part(trial_on_minimal_globalmaxod_yjl060w_results,trial_on_minimal_globalmaxod_yjl060w_results_1).
has_representation(trial_on_minimal_globalmaxod_yjl060w_results_1,'median of knockout medians missing yjl060w').
text_representation('median of knockout medians missing yjl060w').
has_proposition(trial_on_minimal_globalmaxod_yjl060w_results_1,trial_on_minimal_globalmaxod_yjl060w_results_1_proc).
procedure(trial_on_minimal_globalmaxod_yjl060w_results_1_proc).
has_proposition(trial_on_minimal_globalmaxod_yjl060w_results_1_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_minimal_globalmaxod_yjl060w_results,trial_on_minimal_globalmaxod_yjl060w_results_2).
has_representation(trial_on_minimal_globalmaxod_yjl060w_results_2,'median of wild type medians').
text_representation('median of wild type medians').
has_proposition(trial_on_minimal_globalmaxod_yjl060w_results_2,trial_on_minimal_globalmaxod_yjl060w_results_2_proc).
procedure(trial_on_minimal_globalmaxod_yjl060w_results_2_proc).
has_proposition(trial_on_minimal_globalmaxod_yjl060w_results_2_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_minimal_globalmaxod_yjl060w_results,trial_on_minimal_globalmaxod_yjl060w_results_3).
has_representation(trial_on_minimal_globalmaxod_yjl060w_results_3,'difference between trial_on_minimal_globalmaxod_yjl060w_results_1 and trial_on_minimal_globalmaxod_yjl060w_results_2').
text_representation('difference between trial_on_minimal_globalmaxod_yjl060w_results_1 and trial_on_minimal_globalmaxod_yjl060w_results_2').
has_proposition(study_on_minimal_globalmaxod,study_on_minimal_globalmaxod_result).
result(study_on_minimal_globalmaxod_result).
has_part(study_on_minimal_globalmaxod_result,study_on_minimal_globalmaxod_result_1).
has_representation(study_on_minimal_globalmaxod_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_minimal_globalmaxod_result_1,'results/wm_km_global_max_od.csv').
link('results/wm_km_global_max_od.csv').
has_proposition(study_on_minimal_globalmaxod_result_1,study_on_minimal_globalmaxod_result_1_proc).
procedure(study_on_minimal_globalmaxod_result_1_proc).
has_proposition(study_on_minimal_globalmaxod_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_minimal_globalmaxod_result,study_on_minimal_globalmaxod_result_2).
has_representation(study_on_minimal_globalmaxod_result_2,'bar graph (histogram) plotting study_on_minimal_globalmaxod_result_1').
text_representation('bar graph (histogram) plotting study_on_minimal_globalmaxod_result_1').
has_proposition(study_on_minimal_globalmaxod_result_2,'results/overlayed_global_max_od0.8.tiff').
link('results/overlayed_global_max_od0.8.tiff').
has_proposition(study_on_minimal_globalmaxod_result_2,study_on_minimal_globalmaxod_result_2_proc).
procedure(study_on_minimal_globalmaxod_result_2_proc).
has_proposition(study_on_minimal_globalmaxod_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_minimal_globalmaxod,study_on_minimal_globalmaxod_conclusion).
conclusion(study_on_minimal_globalmaxod_conclusion).
has_representation(study_on_minimal_globalmaxod_conclusion,'The knockouts reach a higher global_max_od in minimal than the wild type').
text_representation('The knockouts reach a higher global_max_od in minimal than the wild type').
has_proposition(study_on_minimal_globalmaxod_conclusion,'obtain statistical mode of study_on_minimal_globalmaxod_result_1').
procedure('obtain statistical mode of study_on_minimal_globalmaxod_result_1').
text_representation('obtain statistical mode of study_on_minimal_globalmaxod_result_1').
has_part(study_on_minimal_globalmaxod,trial_on_minimal_globalmaxod_yll060c).
trial(trial_on_minimal_globalmaxod_yll060c).
has_agent(trial_on_minimal_globalmaxod_yll060c,yll060c).
strain(yll060c).
has_proposition(trial_on_minimal_globalmaxod_yll060c_1,trial_on_minimal_globalmaxod_yll060c_1_design).
design(trial_on_minimal_globalmaxod_yll060c_1_design).
has_proposition(trial_on_minimal_globalmaxod_yll060c_1_design,trial_on_minimal_globalmaxod_yll060c_1_factor).
factor(trial_on_minimal_globalmaxod_yll060c_1_factor).
has_representation(trial_on_minimal_globalmaxod_yll060c_1_factor,'presence or absence of yll060c').
has_input(trial_on_minimal_globalmaxod_yll060c_1,trial_on_minimal_globalmaxod_yll060c_1_data).
data(trial_on_minimal_globalmaxod_yll060c_1_data).
has_part(trial_on_minimal_globalmaxod_yll060c_1_data,'48 values for global max od of knockout on minimal medium').
has_part(trial_on_minimal_globalmaxod_yll060c_1_data,'48 values for global max od of wild type on minimal medium').
has_proposition(trial_on_minimal_globalmaxod_yll060c_1_data,'../data/').
link('../data/').
located_in(trial_on_minimal_globalmaxod_yll060c_1,'mar07-trial4_expt1-plate001').
plate('mar07-trial4_expt1-plate001').
has_proposition(trial_on_minimal_globalmaxod_yll060c_1,trial_on_minimal_globalmaxod_yll060c_1_result).
result(trial_on_minimal_globalmaxod_yll060c_1_result).
has_part(trial_on_minimal_globalmaxod_yll060c_1_result,trial_on_minimal_globalmaxod_yll060c_1_result_1).
has_representation(trial_on_minimal_globalmaxod_yll060c_1_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_globalmaxod_yll060c_1_result_1,'results/global_max_od_growth_kmedians.txt').
link('results/global_max_od_growth_kmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_yll060c_1_result_1,trial_on_minimal_globalmaxod_yll060c_1_result_1_proc).
procedure(trial_on_minimal_globalmaxod_yll060c_1_result_1_proc).
has_representation(trial_on_minimal_globalmaxod_yll060c_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_yll060c_1_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_minimal_globalmaxod_yll060c_1_result,trial_on_minimal_globalmaxod_yll060c_1_result_2).
has_representation(trial_on_minimal_globalmaxod_yll060c_1_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_globalmaxod_yll060c_1_result_2,'results/global_max_od_growth_wmmedians.txt').
link('results/global_max_od_growth_wmmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_yll060c_1_result_2,trial_on_minimal_globalmaxod_yll060c_1_result_2_proc).
procedure(trial_on_minimal_globalmaxod_yll060c_1_result_2_proc).
has_representation(trial_on_minimal_globalmaxod_yll060c_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_yll060c_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_globalmaxod_yll060c_2,trial_on_minimal_globalmaxod_yll060c_2_design).
design(trial_on_minimal_globalmaxod_yll060c_2_design).
has_proposition(trial_on_minimal_globalmaxod_yll060c_2_design,trial_on_minimal_globalmaxod_yll060c_2_factor).
factor(trial_on_minimal_globalmaxod_yll060c_2_factor).
has_representation(trial_on_minimal_globalmaxod_yll060c_2_factor,'presence or absence of yll060c').
has_input(trial_on_minimal_globalmaxod_yll060c_2,trial_on_minimal_globalmaxod_yll060c_2_data).
data(trial_on_minimal_globalmaxod_yll060c_2_data).
has_part(trial_on_minimal_globalmaxod_yll060c_2_data,'48 values for global max od of knockout on minimal medium').
has_part(trial_on_minimal_globalmaxod_yll060c_2_data,'48 values for global max od of wild type on minimal medium').
has_proposition(trial_on_minimal_globalmaxod_yll060c_2_data,'../data/').
link('../data/').
located_in(trial_on_minimal_globalmaxod_yll060c_2,'mar07-trial4_expt1-plate002').
plate('mar07-trial4_expt1-plate002').
has_proposition(trial_on_minimal_globalmaxod_yll060c_2,trial_on_minimal_globalmaxod_yll060c_2_result).
result(trial_on_minimal_globalmaxod_yll060c_2_result).
has_part(trial_on_minimal_globalmaxod_yll060c_2_result,trial_on_minimal_globalmaxod_yll060c_2_result_1).
has_representation(trial_on_minimal_globalmaxod_yll060c_2_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_globalmaxod_yll060c_2_result_1,'results/global_max_od_growth_kmedians.txt').
link('results/global_max_od_growth_kmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_yll060c_2_result_1,trial_on_minimal_globalmaxod_yll060c_2_result_1_proc).
procedure(trial_on_minimal_globalmaxod_yll060c_2_result_1_proc).
has_representation(trial_on_minimal_globalmaxod_yll060c_2_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_yll060c_2_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_minimal_globalmaxod_yll060c_2_result,trial_on_minimal_globalmaxod_yll060c_2_result_2).
has_representation(trial_on_minimal_globalmaxod_yll060c_2_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_globalmaxod_yll060c_2_result_2,'results/global_max_od_growth_wmmedians.txt').
link('results/global_max_od_growth_wmmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_yll060c_2_result_2,trial_on_minimal_globalmaxod_yll060c_2_result_2_proc).
procedure(trial_on_minimal_globalmaxod_yll060c_2_result_2_proc).
has_representation(trial_on_minimal_globalmaxod_yll060c_2_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_yll060c_2_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_globalmaxod_yll060c_3,trial_on_minimal_globalmaxod_yll060c_3_design).
design(trial_on_minimal_globalmaxod_yll060c_3_design).
has_proposition(trial_on_minimal_globalmaxod_yll060c_3_design,trial_on_minimal_globalmaxod_yll060c_3_factor).
factor(trial_on_minimal_globalmaxod_yll060c_3_factor).
has_representation(trial_on_minimal_globalmaxod_yll060c_3_factor,'presence or absence of yll060c').
has_input(trial_on_minimal_globalmaxod_yll060c_3,trial_on_minimal_globalmaxod_yll060c_3_data).
data(trial_on_minimal_globalmaxod_yll060c_3_data).
has_part(trial_on_minimal_globalmaxod_yll060c_3_data,'48 values for global max od of knockout on minimal medium').
has_part(trial_on_minimal_globalmaxod_yll060c_3_data,'48 values for global max od of wild type on minimal medium').
has_proposition(trial_on_minimal_globalmaxod_yll060c_3_data,'../data/').
link('../data/').
located_in(trial_on_minimal_globalmaxod_yll060c_3,'mar07-trial5_expt001-plate005').
plate('mar07-trial5_expt001-plate005').
has_proposition(trial_on_minimal_globalmaxod_yll060c_3,trial_on_minimal_globalmaxod_yll060c_3_result).
result(trial_on_minimal_globalmaxod_yll060c_3_result).
has_part(trial_on_minimal_globalmaxod_yll060c_3_result,trial_on_minimal_globalmaxod_yll060c_3_result_1).
has_representation(trial_on_minimal_globalmaxod_yll060c_3_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_globalmaxod_yll060c_3_result_1,'results/global_max_od_growth_kmedians.txt').
link('results/global_max_od_growth_kmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_yll060c_3_result_1,trial_on_minimal_globalmaxod_yll060c_3_result_1_proc).
procedure(trial_on_minimal_globalmaxod_yll060c_3_result_1_proc).
has_representation(trial_on_minimal_globalmaxod_yll060c_3_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_yll060c_3_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_minimal_globalmaxod_yll060c_3_result,trial_on_minimal_globalmaxod_yll060c_3_result_2).
has_representation(trial_on_minimal_globalmaxod_yll060c_3_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_globalmaxod_yll060c_3_result_2,'results/global_max_od_growth_wmmedians.txt').
link('results/global_max_od_growth_wmmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_yll060c_3_result_2,trial_on_minimal_globalmaxod_yll060c_3_result_2_proc).
procedure(trial_on_minimal_globalmaxod_yll060c_3_result_2_proc).
has_representation(trial_on_minimal_globalmaxod_yll060c_3_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
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link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_globalmaxod_yll060c_4,trial_on_minimal_globalmaxod_yll060c_4_design).
design(trial_on_minimal_globalmaxod_yll060c_4_design).
has_proposition(trial_on_minimal_globalmaxod_yll060c_4_design,trial_on_minimal_globalmaxod_yll060c_4_factor).
factor(trial_on_minimal_globalmaxod_yll060c_4_factor).
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data(trial_on_minimal_globalmaxod_yll060c_4_data).
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has_part(trial_on_minimal_globalmaxod_yll060c_4_data,'48 values for global max od of wild type on minimal medium').
has_proposition(trial_on_minimal_globalmaxod_yll060c_4_data,'../data/').
link('../data/').
located_in(trial_on_minimal_globalmaxod_yll060c_4,'mar07-trial9_expt001-plate001').
plate('mar07-trial9_expt001-plate001').
has_proposition(trial_on_minimal_globalmaxod_yll060c_4,trial_on_minimal_globalmaxod_yll060c_4_result).
result(trial_on_minimal_globalmaxod_yll060c_4_result).
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has_representation(trial_on_minimal_globalmaxod_yll060c_4_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
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link('results/global_max_od_growth_kmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_yll060c_4_result_1,trial_on_minimal_globalmaxod_yll060c_4_result_1_proc).
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text_representation('procedure for obtaining median').
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link('proceduresplotKMedians.R').
has_part(trial_on_minimal_globalmaxod_yll060c_4_result,trial_on_minimal_globalmaxod_yll060c_4_result_2).
has_representation(trial_on_minimal_globalmaxod_yll060c_4_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
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link('results/global_max_od_growth_wmmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_yll060c_4_result_2,trial_on_minimal_globalmaxod_yll060c_4_result_2_proc).
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has_representation(trial_on_minimal_globalmaxod_yll060c_4_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_yll060c_4_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_globalmaxod_yll060c_5,trial_on_minimal_globalmaxod_yll060c_5_design).
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has_proposition(trial_on_minimal_globalmaxod_yll060c_5_design,trial_on_minimal_globalmaxod_yll060c_5_factor).
factor(trial_on_minimal_globalmaxod_yll060c_5_factor).
has_representation(trial_on_minimal_globalmaxod_yll060c_5_factor,'presence or absence of yll060c').
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data(trial_on_minimal_globalmaxod_yll060c_5_data).
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has_part(trial_on_minimal_globalmaxod_yll060c_5_data,'48 values for global max od of wild type on minimal medium').
has_proposition(trial_on_minimal_globalmaxod_yll060c_5_data,'../data/').
link('../data/').
located_in(trial_on_minimal_globalmaxod_yll060c_5,'mar07-trial9_expt001-plate002').
plate('mar07-trial9_expt001-plate002').
has_proposition(trial_on_minimal_globalmaxod_yll060c_5,trial_on_minimal_globalmaxod_yll060c_5_result).
result(trial_on_minimal_globalmaxod_yll060c_5_result).
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has_representation(trial_on_minimal_globalmaxod_yll060c_5_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
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link('results/global_max_od_growth_kmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_yll060c_5_result_1,trial_on_minimal_globalmaxod_yll060c_5_result_1_proc).
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has_representation(trial_on_minimal_globalmaxod_yll060c_5_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
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link('proceduresplotKMedians.R').
has_part(trial_on_minimal_globalmaxod_yll060c_5_result,trial_on_minimal_globalmaxod_yll060c_5_result_2).
has_representation(trial_on_minimal_globalmaxod_yll060c_5_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
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link('results/global_max_od_growth_wmmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_yll060c_5_result_2,trial_on_minimal_globalmaxod_yll060c_5_result_2_proc).
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has_representation(trial_on_minimal_globalmaxod_yll060c_5_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_yll060c_5_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_globalmaxod_yll060c,trial_on_minimal_globalmaxod_yll060c_results).
result(trial_on_minimal_globalmaxod_yll060c_results).
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has_representation(trial_on_minimal_globalmaxod_yll060c_results_1,'median of knockout medians missing yll060c').
text_representation('median of knockout medians missing yll060c').
has_proposition(trial_on_minimal_globalmaxod_yll060c_results_1,trial_on_minimal_globalmaxod_yll060c_results_1_proc).
procedure(trial_on_minimal_globalmaxod_yll060c_results_1_proc).
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link('procedures/remove_dupl_medians.R').
has_part(trial_on_minimal_globalmaxod_yll060c_results,trial_on_minimal_globalmaxod_yll060c_results_2).
has_representation(trial_on_minimal_globalmaxod_yll060c_results_2,'median of wild type medians').
text_representation('median of wild type medians').
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has_proposition(trial_on_minimal_globalmaxod_yll060c_results_2_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_minimal_globalmaxod_yll060c_results,trial_on_minimal_globalmaxod_yll060c_results_3).
has_representation(trial_on_minimal_globalmaxod_yll060c_results_3,'difference between trial_on_minimal_globalmaxod_yll060c_results_1 and trial_on_minimal_globalmaxod_yll060c_results_2').
text_representation('difference between trial_on_minimal_globalmaxod_yll060c_results_1 and trial_on_minimal_globalmaxod_yll060c_results_2').
has_proposition(study_on_minimal_globalmaxod,study_on_minimal_globalmaxod_result).
result(study_on_minimal_globalmaxod_result).
has_part(study_on_minimal_globalmaxod_result,study_on_minimal_globalmaxod_result_1).
has_representation(study_on_minimal_globalmaxod_result_1,'vector of differences').
text_representation('vector of differences').
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link('results/wm_km_global_max_od.csv').
has_proposition(study_on_minimal_globalmaxod_result_1,study_on_minimal_globalmaxod_result_1_proc).
procedure(study_on_minimal_globalmaxod_result_1_proc).
has_proposition(study_on_minimal_globalmaxod_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_minimal_globalmaxod_result,study_on_minimal_globalmaxod_result_2).
has_representation(study_on_minimal_globalmaxod_result_2,'bar graph (histogram) plotting study_on_minimal_globalmaxod_result_1').
text_representation('bar graph (histogram) plotting study_on_minimal_globalmaxod_result_1').
has_proposition(study_on_minimal_globalmaxod_result_2,'results/overlayed_global_max_od0.8.tiff').
link('results/overlayed_global_max_od0.8.tiff').
has_proposition(study_on_minimal_globalmaxod_result_2,study_on_minimal_globalmaxod_result_2_proc).
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has_proposition(study_on_minimal_globalmaxod_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_minimal_globalmaxod,study_on_minimal_globalmaxod_conclusion).
conclusion(study_on_minimal_globalmaxod_conclusion).
has_representation(study_on_minimal_globalmaxod_conclusion,'The knockouts reach a higher global_max_od in minimal than the wild type').
text_representation('The knockouts reach a higher global_max_od in minimal than the wild type').
has_proposition(study_on_minimal_globalmaxod_conclusion,'obtain statistical mode of study_on_minimal_globalmaxod_result_1').
procedure('obtain statistical mode of study_on_minimal_globalmaxod_result_1').
text_representation('obtain statistical mode of study_on_minimal_globalmaxod_result_1').
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trial(trial_on_minimal_globalmaxod_ylr070c).
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strain(ylr070c).
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design(trial_on_minimal_globalmaxod_ylr070c_1_design).
has_proposition(trial_on_minimal_globalmaxod_ylr070c_1_design,trial_on_minimal_globalmaxod_ylr070c_1_factor).
factor(trial_on_minimal_globalmaxod_ylr070c_1_factor).
has_representation(trial_on_minimal_globalmaxod_ylr070c_1_factor,'presence or absence of ylr070c').
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data(trial_on_minimal_globalmaxod_ylr070c_1_data).
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has_part(trial_on_minimal_globalmaxod_ylr070c_1_data,'48 values for global max od of wild type on minimal medium').
has_proposition(trial_on_minimal_globalmaxod_ylr070c_1_data,'../data/').
link('../data/').
located_in(trial_on_minimal_globalmaxod_ylr070c_1,'jan07-trial1_expt001-plate002').
plate('jan07-trial1_expt001-plate002').
has_proposition(trial_on_minimal_globalmaxod_ylr070c_1,trial_on_minimal_globalmaxod_ylr070c_1_result).
result(trial_on_minimal_globalmaxod_ylr070c_1_result).
has_part(trial_on_minimal_globalmaxod_ylr070c_1_result,trial_on_minimal_globalmaxod_ylr070c_1_result_1).
has_representation(trial_on_minimal_globalmaxod_ylr070c_1_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
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link('results/global_max_od_growth_kmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ylr070c_1_result_1,trial_on_minimal_globalmaxod_ylr070c_1_result_1_proc).
procedure(trial_on_minimal_globalmaxod_ylr070c_1_result_1_proc).
has_representation(trial_on_minimal_globalmaxod_ylr070c_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
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link('proceduresplotKMedians.R').
has_part(trial_on_minimal_globalmaxod_ylr070c_1_result,trial_on_minimal_globalmaxod_ylr070c_1_result_2).
has_representation(trial_on_minimal_globalmaxod_ylr070c_1_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_globalmaxod_ylr070c_1_result_2,'results/global_max_od_growth_wmmedians.txt').
link('results/global_max_od_growth_wmmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ylr070c_1_result_2,trial_on_minimal_globalmaxod_ylr070c_1_result_2_proc).
procedure(trial_on_minimal_globalmaxod_ylr070c_1_result_2_proc).
has_representation(trial_on_minimal_globalmaxod_ylr070c_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
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link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_globalmaxod_ylr070c_2,trial_on_minimal_globalmaxod_ylr070c_2_design).
design(trial_on_minimal_globalmaxod_ylr070c_2_design).
has_proposition(trial_on_minimal_globalmaxod_ylr070c_2_design,trial_on_minimal_globalmaxod_ylr070c_2_factor).
factor(trial_on_minimal_globalmaxod_ylr070c_2_factor).
has_representation(trial_on_minimal_globalmaxod_ylr070c_2_factor,'presence or absence of ylr070c').
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data(trial_on_minimal_globalmaxod_ylr070c_2_data).
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has_part(trial_on_minimal_globalmaxod_ylr070c_2_data,'48 values for global max od of wild type on minimal medium').
has_proposition(trial_on_minimal_globalmaxod_ylr070c_2_data,'../data/').
link('../data/').
located_in(trial_on_minimal_globalmaxod_ylr070c_2,'jan07-trial1_expt001-plate003').
plate('jan07-trial1_expt001-plate003').
has_proposition(trial_on_minimal_globalmaxod_ylr070c_2,trial_on_minimal_globalmaxod_ylr070c_2_result).
result(trial_on_minimal_globalmaxod_ylr070c_2_result).
has_part(trial_on_minimal_globalmaxod_ylr070c_2_result,trial_on_minimal_globalmaxod_ylr070c_2_result_1).
has_representation(trial_on_minimal_globalmaxod_ylr070c_2_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_globalmaxod_ylr070c_2_result_1,'results/global_max_od_growth_kmedians.txt').
link('results/global_max_od_growth_kmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ylr070c_2_result_1,trial_on_minimal_globalmaxod_ylr070c_2_result_1_proc).
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has_representation(trial_on_minimal_globalmaxod_ylr070c_2_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_ylr070c_2_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_minimal_globalmaxod_ylr070c_2_result,trial_on_minimal_globalmaxod_ylr070c_2_result_2).
has_representation(trial_on_minimal_globalmaxod_ylr070c_2_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
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link('results/global_max_od_growth_wmmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ylr070c_2_result_2,trial_on_minimal_globalmaxod_ylr070c_2_result_2_proc).
procedure(trial_on_minimal_globalmaxod_ylr070c_2_result_2_proc).
has_representation(trial_on_minimal_globalmaxod_ylr070c_2_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
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link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_globalmaxod_ylr070c_3,trial_on_minimal_globalmaxod_ylr070c_3_design).
design(trial_on_minimal_globalmaxod_ylr070c_3_design).
has_proposition(trial_on_minimal_globalmaxod_ylr070c_3_design,trial_on_minimal_globalmaxod_ylr070c_3_factor).
factor(trial_on_minimal_globalmaxod_ylr070c_3_factor).
has_representation(trial_on_minimal_globalmaxod_ylr070c_3_factor,'presence or absence of ylr070c').
has_input(trial_on_minimal_globalmaxod_ylr070c_3,trial_on_minimal_globalmaxod_ylr070c_3_data).
data(trial_on_minimal_globalmaxod_ylr070c_3_data).
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has_part(trial_on_minimal_globalmaxod_ylr070c_3_data,'48 values for global max od of wild type on minimal medium').
has_proposition(trial_on_minimal_globalmaxod_ylr070c_3_data,'../data/').
link('../data/').
located_in(trial_on_minimal_globalmaxod_ylr070c_3,'jan07-trial2_expt001-plate007').
plate('jan07-trial2_expt001-plate007').
has_proposition(trial_on_minimal_globalmaxod_ylr070c_3,trial_on_minimal_globalmaxod_ylr070c_3_result).
result(trial_on_minimal_globalmaxod_ylr070c_3_result).
has_part(trial_on_minimal_globalmaxod_ylr070c_3_result,trial_on_minimal_globalmaxod_ylr070c_3_result_1).
has_representation(trial_on_minimal_globalmaxod_ylr070c_3_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_globalmaxod_ylr070c_3_result_1,'results/global_max_od_growth_kmedians.txt').
link('results/global_max_od_growth_kmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ylr070c_3_result_1,trial_on_minimal_globalmaxod_ylr070c_3_result_1_proc).
procedure(trial_on_minimal_globalmaxod_ylr070c_3_result_1_proc).
has_representation(trial_on_minimal_globalmaxod_ylr070c_3_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
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link('proceduresplotKMedians.R').
has_part(trial_on_minimal_globalmaxod_ylr070c_3_result,trial_on_minimal_globalmaxod_ylr070c_3_result_2).
has_representation(trial_on_minimal_globalmaxod_ylr070c_3_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_globalmaxod_ylr070c_3_result_2,'results/global_max_od_growth_wmmedians.txt').
link('results/global_max_od_growth_wmmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ylr070c_3_result_2,trial_on_minimal_globalmaxod_ylr070c_3_result_2_proc).
procedure(trial_on_minimal_globalmaxod_ylr070c_3_result_2_proc).
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text_representation('procedure for obtaining median').
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link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_globalmaxod_ylr070c_4,trial_on_minimal_globalmaxod_ylr070c_4_design).
design(trial_on_minimal_globalmaxod_ylr070c_4_design).
has_proposition(trial_on_minimal_globalmaxod_ylr070c_4_design,trial_on_minimal_globalmaxod_ylr070c_4_factor).
factor(trial_on_minimal_globalmaxod_ylr070c_4_factor).
has_representation(trial_on_minimal_globalmaxod_ylr070c_4_factor,'presence or absence of ylr070c').
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data(trial_on_minimal_globalmaxod_ylr070c_4_data).
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has_part(trial_on_minimal_globalmaxod_ylr070c_4_data,'48 values for global max od of wild type on minimal medium').
has_proposition(trial_on_minimal_globalmaxod_ylr070c_4_data,'../data/').
link('../data/').
located_in(trial_on_minimal_globalmaxod_ylr070c_4,'jan07-trial2_expt001-plate008').
plate('jan07-trial2_expt001-plate008').
has_proposition(trial_on_minimal_globalmaxod_ylr070c_4,trial_on_minimal_globalmaxod_ylr070c_4_result).
result(trial_on_minimal_globalmaxod_ylr070c_4_result).
has_part(trial_on_minimal_globalmaxod_ylr070c_4_result,trial_on_minimal_globalmaxod_ylr070c_4_result_1).
has_representation(trial_on_minimal_globalmaxod_ylr070c_4_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_globalmaxod_ylr070c_4_result_1,'results/global_max_od_growth_kmedians.txt').
link('results/global_max_od_growth_kmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ylr070c_4_result_1,trial_on_minimal_globalmaxod_ylr070c_4_result_1_proc).
procedure(trial_on_minimal_globalmaxod_ylr070c_4_result_1_proc).
has_representation(trial_on_minimal_globalmaxod_ylr070c_4_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_ylr070c_4_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_minimal_globalmaxod_ylr070c_4_result,trial_on_minimal_globalmaxod_ylr070c_4_result_2).
has_representation(trial_on_minimal_globalmaxod_ylr070c_4_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_globalmaxod_ylr070c_4_result_2,'results/global_max_od_growth_wmmedians.txt').
link('results/global_max_od_growth_wmmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ylr070c_4_result_2,trial_on_minimal_globalmaxod_ylr070c_4_result_2_proc).
procedure(trial_on_minimal_globalmaxod_ylr070c_4_result_2_proc).
has_representation(trial_on_minimal_globalmaxod_ylr070c_4_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_ylr070c_4_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_globalmaxod_ylr070c_5,trial_on_minimal_globalmaxod_ylr070c_5_design).
design(trial_on_minimal_globalmaxod_ylr070c_5_design).
has_proposition(trial_on_minimal_globalmaxod_ylr070c_5_design,trial_on_minimal_globalmaxod_ylr070c_5_factor).
factor(trial_on_minimal_globalmaxod_ylr070c_5_factor).
has_representation(trial_on_minimal_globalmaxod_ylr070c_5_factor,'presence or absence of ylr070c').
has_input(trial_on_minimal_globalmaxod_ylr070c_5,trial_on_minimal_globalmaxod_ylr070c_5_data).
data(trial_on_minimal_globalmaxod_ylr070c_5_data).
has_part(trial_on_minimal_globalmaxod_ylr070c_5_data,'48 values for global max od of knockout on minimal medium').
has_part(trial_on_minimal_globalmaxod_ylr070c_5_data,'48 values for global max od of wild type on minimal medium').
has_proposition(trial_on_minimal_globalmaxod_ylr070c_5_data,'../data/').
link('../data/').
located_in(trial_on_minimal_globalmaxod_ylr070c_5,'jan07-trial2_expt001-plate009').
plate('jan07-trial2_expt001-plate009').
has_proposition(trial_on_minimal_globalmaxod_ylr070c_5,trial_on_minimal_globalmaxod_ylr070c_5_result).
result(trial_on_minimal_globalmaxod_ylr070c_5_result).
has_part(trial_on_minimal_globalmaxod_ylr070c_5_result,trial_on_minimal_globalmaxod_ylr070c_5_result_1).
has_representation(trial_on_minimal_globalmaxod_ylr070c_5_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_globalmaxod_ylr070c_5_result_1,'results/global_max_od_growth_kmedians.txt').
link('results/global_max_od_growth_kmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ylr070c_5_result_1,trial_on_minimal_globalmaxod_ylr070c_5_result_1_proc).
procedure(trial_on_minimal_globalmaxod_ylr070c_5_result_1_proc).
has_representation(trial_on_minimal_globalmaxod_ylr070c_5_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_ylr070c_5_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_minimal_globalmaxod_ylr070c_5_result,trial_on_minimal_globalmaxod_ylr070c_5_result_2).
has_representation(trial_on_minimal_globalmaxod_ylr070c_5_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_globalmaxod_ylr070c_5_result_2,'results/global_max_od_growth_wmmedians.txt').
link('results/global_max_od_growth_wmmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ylr070c_5_result_2,trial_on_minimal_globalmaxod_ylr070c_5_result_2_proc).
procedure(trial_on_minimal_globalmaxod_ylr070c_5_result_2_proc).
has_representation(trial_on_minimal_globalmaxod_ylr070c_5_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_ylr070c_5_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_globalmaxod_ylr070c_6,trial_on_minimal_globalmaxod_ylr070c_6_design).
design(trial_on_minimal_globalmaxod_ylr070c_6_design).
has_proposition(trial_on_minimal_globalmaxod_ylr070c_6_design,trial_on_minimal_globalmaxod_ylr070c_6_factor).
factor(trial_on_minimal_globalmaxod_ylr070c_6_factor).
has_representation(trial_on_minimal_globalmaxod_ylr070c_6_factor,'presence or absence of ylr070c').
has_input(trial_on_minimal_globalmaxod_ylr070c_6,trial_on_minimal_globalmaxod_ylr070c_6_data).
data(trial_on_minimal_globalmaxod_ylr070c_6_data).
has_part(trial_on_minimal_globalmaxod_ylr070c_6_data,'48 values for global max od of knockout on minimal medium').
has_part(trial_on_minimal_globalmaxod_ylr070c_6_data,'48 values for global max od of wild type on minimal medium').
has_proposition(trial_on_minimal_globalmaxod_ylr070c_6_data,'../data/').
link('../data/').
located_in(trial_on_minimal_globalmaxod_ylr070c_6,'jan07-trial2_expt001-plate010').
plate('jan07-trial2_expt001-plate010').
has_proposition(trial_on_minimal_globalmaxod_ylr070c_6,trial_on_minimal_globalmaxod_ylr070c_6_result).
result(trial_on_minimal_globalmaxod_ylr070c_6_result).
has_part(trial_on_minimal_globalmaxod_ylr070c_6_result,trial_on_minimal_globalmaxod_ylr070c_6_result_1).
has_representation(trial_on_minimal_globalmaxod_ylr070c_6_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_globalmaxod_ylr070c_6_result_1,'results/global_max_od_growth_kmedians.txt').
link('results/global_max_od_growth_kmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ylr070c_6_result_1,trial_on_minimal_globalmaxod_ylr070c_6_result_1_proc).
procedure(trial_on_minimal_globalmaxod_ylr070c_6_result_1_proc).
has_representation(trial_on_minimal_globalmaxod_ylr070c_6_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_ylr070c_6_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_minimal_globalmaxod_ylr070c_6_result,trial_on_minimal_globalmaxod_ylr070c_6_result_2).
has_representation(trial_on_minimal_globalmaxod_ylr070c_6_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_globalmaxod_ylr070c_6_result_2,'results/global_max_od_growth_wmmedians.txt').
link('results/global_max_od_growth_wmmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ylr070c_6_result_2,trial_on_minimal_globalmaxod_ylr070c_6_result_2_proc).
procedure(trial_on_minimal_globalmaxod_ylr070c_6_result_2_proc).
has_representation(trial_on_minimal_globalmaxod_ylr070c_6_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_ylr070c_6_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_globalmaxod_ylr070c,trial_on_minimal_globalmaxod_ylr070c_results).
result(trial_on_minimal_globalmaxod_ylr070c_results).
has_part(trial_on_minimal_globalmaxod_ylr070c_results,trial_on_minimal_globalmaxod_ylr070c_results_1).
has_representation(trial_on_minimal_globalmaxod_ylr070c_results_1,'median of knockout medians missing ylr070c').
text_representation('median of knockout medians missing ylr070c').
has_proposition(trial_on_minimal_globalmaxod_ylr070c_results_1,trial_on_minimal_globalmaxod_ylr070c_results_1_proc).
procedure(trial_on_minimal_globalmaxod_ylr070c_results_1_proc).
has_proposition(trial_on_minimal_globalmaxod_ylr070c_results_1_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_minimal_globalmaxod_ylr070c_results,trial_on_minimal_globalmaxod_ylr070c_results_2).
has_representation(trial_on_minimal_globalmaxod_ylr070c_results_2,'median of wild type medians').
text_representation('median of wild type medians').
has_proposition(trial_on_minimal_globalmaxod_ylr070c_results_2,trial_on_minimal_globalmaxod_ylr070c_results_2_proc).
procedure(trial_on_minimal_globalmaxod_ylr070c_results_2_proc).
has_proposition(trial_on_minimal_globalmaxod_ylr070c_results_2_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_minimal_globalmaxod_ylr070c_results,trial_on_minimal_globalmaxod_ylr070c_results_3).
has_representation(trial_on_minimal_globalmaxod_ylr070c_results_3,'difference between trial_on_minimal_globalmaxod_ylr070c_results_1 and trial_on_minimal_globalmaxod_ylr070c_results_2').
text_representation('difference between trial_on_minimal_globalmaxod_ylr070c_results_1 and trial_on_minimal_globalmaxod_ylr070c_results_2').
has_proposition(study_on_minimal_globalmaxod,study_on_minimal_globalmaxod_result).
result(study_on_minimal_globalmaxod_result).
has_part(study_on_minimal_globalmaxod_result,study_on_minimal_globalmaxod_result_1).
has_representation(study_on_minimal_globalmaxod_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_minimal_globalmaxod_result_1,'results/wm_km_global_max_od.csv').
link('results/wm_km_global_max_od.csv').
has_proposition(study_on_minimal_globalmaxod_result_1,study_on_minimal_globalmaxod_result_1_proc).
procedure(study_on_minimal_globalmaxod_result_1_proc).
has_proposition(study_on_minimal_globalmaxod_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_minimal_globalmaxod_result,study_on_minimal_globalmaxod_result_2).
has_representation(study_on_minimal_globalmaxod_result_2,'bar graph (histogram) plotting study_on_minimal_globalmaxod_result_1').
text_representation('bar graph (histogram) plotting study_on_minimal_globalmaxod_result_1').
has_proposition(study_on_minimal_globalmaxod_result_2,'results/overlayed_global_max_od0.8.tiff').
link('results/overlayed_global_max_od0.8.tiff').
has_proposition(study_on_minimal_globalmaxod_result_2,study_on_minimal_globalmaxod_result_2_proc).
procedure(study_on_minimal_globalmaxod_result_2_proc).
has_proposition(study_on_minimal_globalmaxod_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_minimal_globalmaxod,study_on_minimal_globalmaxod_conclusion).
conclusion(study_on_minimal_globalmaxod_conclusion).
has_representation(study_on_minimal_globalmaxod_conclusion,'The knockouts reach a higher global_max_od in minimal than the wild type').
text_representation('The knockouts reach a higher global_max_od in minimal than the wild type').
has_proposition(study_on_minimal_globalmaxod_conclusion,'obtain statistical mode of study_on_minimal_globalmaxod_result_1').
procedure('obtain statistical mode of study_on_minimal_globalmaxod_result_1').
text_representation('obtain statistical mode of study_on_minimal_globalmaxod_result_1').
has_part(study_on_minimal_globalmaxod,trial_on_minimal_globalmaxod_ypr121w).
trial(trial_on_minimal_globalmaxod_ypr121w).
has_agent(trial_on_minimal_globalmaxod_ypr121w,ypr121w).
strain(ypr121w).
has_proposition(trial_on_minimal_globalmaxod_ypr121w_1,trial_on_minimal_globalmaxod_ypr121w_1_design).
design(trial_on_minimal_globalmaxod_ypr121w_1_design).
has_proposition(trial_on_minimal_globalmaxod_ypr121w_1_design,trial_on_minimal_globalmaxod_ypr121w_1_factor).
factor(trial_on_minimal_globalmaxod_ypr121w_1_factor).
has_representation(trial_on_minimal_globalmaxod_ypr121w_1_factor,'presence or absence of ypr121w').
has_input(trial_on_minimal_globalmaxod_ypr121w_1,trial_on_minimal_globalmaxod_ypr121w_1_data).
data(trial_on_minimal_globalmaxod_ypr121w_1_data).
has_part(trial_on_minimal_globalmaxod_ypr121w_1_data,'48 values for global max od of knockout on minimal medium').
has_part(trial_on_minimal_globalmaxod_ypr121w_1_data,'48 values for global max od of wild type on minimal medium').
has_proposition(trial_on_minimal_globalmaxod_ypr121w_1_data,'../data/').
link('../data/').
located_in(trial_on_minimal_globalmaxod_ypr121w_1,'feb07-trial1_expt001-plate005').
plate('feb07-trial1_expt001-plate005').
has_proposition(trial_on_minimal_globalmaxod_ypr121w_1,trial_on_minimal_globalmaxod_ypr121w_1_result).
result(trial_on_minimal_globalmaxod_ypr121w_1_result).
has_part(trial_on_minimal_globalmaxod_ypr121w_1_result,trial_on_minimal_globalmaxod_ypr121w_1_result_1).
has_representation(trial_on_minimal_globalmaxod_ypr121w_1_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_globalmaxod_ypr121w_1_result_1,'results/global_max_od_growth_kmedians.txt').
link('results/global_max_od_growth_kmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ypr121w_1_result_1,trial_on_minimal_globalmaxod_ypr121w_1_result_1_proc).
procedure(trial_on_minimal_globalmaxod_ypr121w_1_result_1_proc).
has_representation(trial_on_minimal_globalmaxod_ypr121w_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_ypr121w_1_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_minimal_globalmaxod_ypr121w_1_result,trial_on_minimal_globalmaxod_ypr121w_1_result_2).
has_representation(trial_on_minimal_globalmaxod_ypr121w_1_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_globalmaxod_ypr121w_1_result_2,'results/global_max_od_growth_wmmedians.txt').
link('results/global_max_od_growth_wmmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ypr121w_1_result_2,trial_on_minimal_globalmaxod_ypr121w_1_result_2_proc).
procedure(trial_on_minimal_globalmaxod_ypr121w_1_result_2_proc).
has_representation(trial_on_minimal_globalmaxod_ypr121w_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_ypr121w_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_globalmaxod_ypr121w,trial_on_minimal_globalmaxod_ypr121w_results).
result(trial_on_minimal_globalmaxod_ypr121w_results).
has_part(trial_on_minimal_globalmaxod_ypr121w_results,trial_on_minimal_globalmaxod_ypr121w_results_1).
has_representation(trial_on_minimal_globalmaxod_ypr121w_results_1,'median of knockout medians missing ypr121w').
text_representation('median of knockout medians missing ypr121w').
has_proposition(trial_on_minimal_globalmaxod_ypr121w_results_1,trial_on_minimal_globalmaxod_ypr121w_results_1_proc).
procedure(trial_on_minimal_globalmaxod_ypr121w_results_1_proc).
has_proposition(trial_on_minimal_globalmaxod_ypr121w_results_1_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_minimal_globalmaxod_ypr121w_results,trial_on_minimal_globalmaxod_ypr121w_results_2).
has_representation(trial_on_minimal_globalmaxod_ypr121w_results_2,'median of wild type medians').
text_representation('median of wild type medians').
has_proposition(trial_on_minimal_globalmaxod_ypr121w_results_2,trial_on_minimal_globalmaxod_ypr121w_results_2_proc).
procedure(trial_on_minimal_globalmaxod_ypr121w_results_2_proc).
has_proposition(trial_on_minimal_globalmaxod_ypr121w_results_2_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_minimal_globalmaxod_ypr121w_results,trial_on_minimal_globalmaxod_ypr121w_results_3).
has_representation(trial_on_minimal_globalmaxod_ypr121w_results_3,'difference between trial_on_minimal_globalmaxod_ypr121w_results_1 and trial_on_minimal_globalmaxod_ypr121w_results_2').
text_representation('difference between trial_on_minimal_globalmaxod_ypr121w_results_1 and trial_on_minimal_globalmaxod_ypr121w_results_2').
has_proposition(study_on_minimal_globalmaxod,study_on_minimal_globalmaxod_result).
result(study_on_minimal_globalmaxod_result).
has_part(study_on_minimal_globalmaxod_result,study_on_minimal_globalmaxod_result_1).
has_representation(study_on_minimal_globalmaxod_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_minimal_globalmaxod_result_1,'results/wm_km_global_max_od.csv').
link('results/wm_km_global_max_od.csv').
has_proposition(study_on_minimal_globalmaxod_result_1,study_on_minimal_globalmaxod_result_1_proc).
procedure(study_on_minimal_globalmaxod_result_1_proc).
has_proposition(study_on_minimal_globalmaxod_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_minimal_globalmaxod_result,study_on_minimal_globalmaxod_result_2).
has_representation(study_on_minimal_globalmaxod_result_2,'bar graph (histogram) plotting study_on_minimal_globalmaxod_result_1').
text_representation('bar graph (histogram) plotting study_on_minimal_globalmaxod_result_1').
has_proposition(study_on_minimal_globalmaxod_result_2,'results/overlayed_global_max_od0.8.tiff').
link('results/overlayed_global_max_od0.8.tiff').
has_proposition(study_on_minimal_globalmaxod_result_2,study_on_minimal_globalmaxod_result_2_proc).
procedure(study_on_minimal_globalmaxod_result_2_proc).
has_proposition(study_on_minimal_globalmaxod_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_minimal_globalmaxod,study_on_minimal_globalmaxod_conclusion).
conclusion(study_on_minimal_globalmaxod_conclusion).
has_representation(study_on_minimal_globalmaxod_conclusion,'The knockouts reach a higher global_max_od in minimal than the wild type').
text_representation('The knockouts reach a higher global_max_od in minimal than the wild type').
has_proposition(study_on_minimal_globalmaxod_conclusion,'obtain statistical mode of study_on_minimal_globalmaxod_result_1').
procedure('obtain statistical mode of study_on_minimal_globalmaxod_result_1').
text_representation('obtain statistical mode of study_on_minimal_globalmaxod_result_1').
has_part(study_on_minimal_globalmaxod,trial_on_minimal_globalmaxod_ynr027w).
trial(trial_on_minimal_globalmaxod_ynr027w).
has_agent(trial_on_minimal_globalmaxod_ynr027w,ynr027w).
strain(ynr027w).
has_proposition(trial_on_minimal_globalmaxod_ynr027w_1,trial_on_minimal_globalmaxod_ynr027w_1_design).
design(trial_on_minimal_globalmaxod_ynr027w_1_design).
has_proposition(trial_on_minimal_globalmaxod_ynr027w_1_design,trial_on_minimal_globalmaxod_ynr027w_1_factor).
factor(trial_on_minimal_globalmaxod_ynr027w_1_factor).
has_representation(trial_on_minimal_globalmaxod_ynr027w_1_factor,'presence or absence of ynr027w').
has_input(trial_on_minimal_globalmaxod_ynr027w_1,trial_on_minimal_globalmaxod_ynr027w_1_data).
data(trial_on_minimal_globalmaxod_ynr027w_1_data).
has_part(trial_on_minimal_globalmaxod_ynr027w_1_data,'48 values for global max od of knockout on minimal medium').
has_part(trial_on_minimal_globalmaxod_ynr027w_1_data,'48 values for global max od of wild type on minimal medium').
has_proposition(trial_on_minimal_globalmaxod_ynr027w_1_data,'../data/').
link('../data/').
located_in(trial_on_minimal_globalmaxod_ynr027w_1,'jan07-trial1_expt001-plate010').
plate('jan07-trial1_expt001-plate010').
has_proposition(trial_on_minimal_globalmaxod_ynr027w_1,trial_on_minimal_globalmaxod_ynr027w_1_result).
result(trial_on_minimal_globalmaxod_ynr027w_1_result).
has_part(trial_on_minimal_globalmaxod_ynr027w_1_result,trial_on_minimal_globalmaxod_ynr027w_1_result_1).
has_representation(trial_on_minimal_globalmaxod_ynr027w_1_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_globalmaxod_ynr027w_1_result_1,'results/global_max_od_growth_kmedians.txt').
link('results/global_max_od_growth_kmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ynr027w_1_result_1,trial_on_minimal_globalmaxod_ynr027w_1_result_1_proc).
procedure(trial_on_minimal_globalmaxod_ynr027w_1_result_1_proc).
has_representation(trial_on_minimal_globalmaxod_ynr027w_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_ynr027w_1_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_minimal_globalmaxod_ynr027w_1_result,trial_on_minimal_globalmaxod_ynr027w_1_result_2).
has_representation(trial_on_minimal_globalmaxod_ynr027w_1_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_globalmaxod_ynr027w_1_result_2,'results/global_max_od_growth_wmmedians.txt').
link('results/global_max_od_growth_wmmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ynr027w_1_result_2,trial_on_minimal_globalmaxod_ynr027w_1_result_2_proc).
procedure(trial_on_minimal_globalmaxod_ynr027w_1_result_2_proc).
has_representation(trial_on_minimal_globalmaxod_ynr027w_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_ynr027w_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_globalmaxod_ynr027w_2,trial_on_minimal_globalmaxod_ynr027w_2_design).
design(trial_on_minimal_globalmaxod_ynr027w_2_design).
has_proposition(trial_on_minimal_globalmaxod_ynr027w_2_design,trial_on_minimal_globalmaxod_ynr027w_2_factor).
factor(trial_on_minimal_globalmaxod_ynr027w_2_factor).
has_representation(trial_on_minimal_globalmaxod_ynr027w_2_factor,'presence or absence of ynr027w').
has_input(trial_on_minimal_globalmaxod_ynr027w_2,trial_on_minimal_globalmaxod_ynr027w_2_data).
data(trial_on_minimal_globalmaxod_ynr027w_2_data).
has_part(trial_on_minimal_globalmaxod_ynr027w_2_data,'48 values for global max od of knockout on minimal medium').
has_part(trial_on_minimal_globalmaxod_ynr027w_2_data,'48 values for global max od of wild type on minimal medium').
has_proposition(trial_on_minimal_globalmaxod_ynr027w_2_data,'../data/').
link('../data/').
located_in(trial_on_minimal_globalmaxod_ynr027w_2,'mar07-trial1_expt001-plate002').
plate('mar07-trial1_expt001-plate002').
has_proposition(trial_on_minimal_globalmaxod_ynr027w_2,trial_on_minimal_globalmaxod_ynr027w_2_result).
result(trial_on_minimal_globalmaxod_ynr027w_2_result).
has_part(trial_on_minimal_globalmaxod_ynr027w_2_result,trial_on_minimal_globalmaxod_ynr027w_2_result_1).
has_representation(trial_on_minimal_globalmaxod_ynr027w_2_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_globalmaxod_ynr027w_2_result_1,'results/global_max_od_growth_kmedians.txt').
link('results/global_max_od_growth_kmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ynr027w_2_result_1,trial_on_minimal_globalmaxod_ynr027w_2_result_1_proc).
procedure(trial_on_minimal_globalmaxod_ynr027w_2_result_1_proc).
has_representation(trial_on_minimal_globalmaxod_ynr027w_2_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_ynr027w_2_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_minimal_globalmaxod_ynr027w_2_result,trial_on_minimal_globalmaxod_ynr027w_2_result_2).
has_representation(trial_on_minimal_globalmaxod_ynr027w_2_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_globalmaxod_ynr027w_2_result_2,'results/global_max_od_growth_wmmedians.txt').
link('results/global_max_od_growth_wmmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ynr027w_2_result_2,trial_on_minimal_globalmaxod_ynr027w_2_result_2_proc).
procedure(trial_on_minimal_globalmaxod_ynr027w_2_result_2_proc).
has_representation(trial_on_minimal_globalmaxod_ynr027w_2_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
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link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_globalmaxod_ynr027w,trial_on_minimal_globalmaxod_ynr027w_results).
result(trial_on_minimal_globalmaxod_ynr027w_results).
has_part(trial_on_minimal_globalmaxod_ynr027w_results,trial_on_minimal_globalmaxod_ynr027w_results_1).
has_representation(trial_on_minimal_globalmaxod_ynr027w_results_1,'median of knockout medians missing ynr027w').
text_representation('median of knockout medians missing ynr027w').
has_proposition(trial_on_minimal_globalmaxod_ynr027w_results_1,trial_on_minimal_globalmaxod_ynr027w_results_1_proc).
procedure(trial_on_minimal_globalmaxod_ynr027w_results_1_proc).
has_proposition(trial_on_minimal_globalmaxod_ynr027w_results_1_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_minimal_globalmaxod_ynr027w_results,trial_on_minimal_globalmaxod_ynr027w_results_2).
has_representation(trial_on_minimal_globalmaxod_ynr027w_results_2,'median of wild type medians').
text_representation('median of wild type medians').
has_proposition(trial_on_minimal_globalmaxod_ynr027w_results_2,trial_on_minimal_globalmaxod_ynr027w_results_2_proc).
procedure(trial_on_minimal_globalmaxod_ynr027w_results_2_proc).
has_proposition(trial_on_minimal_globalmaxod_ynr027w_results_2_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_minimal_globalmaxod_ynr027w_results,trial_on_minimal_globalmaxod_ynr027w_results_3).
has_representation(trial_on_minimal_globalmaxod_ynr027w_results_3,'difference between trial_on_minimal_globalmaxod_ynr027w_results_1 and trial_on_minimal_globalmaxod_ynr027w_results_2').
text_representation('difference between trial_on_minimal_globalmaxod_ynr027w_results_1 and trial_on_minimal_globalmaxod_ynr027w_results_2').
has_proposition(study_on_minimal_globalmaxod,study_on_minimal_globalmaxod_result).
result(study_on_minimal_globalmaxod_result).
has_part(study_on_minimal_globalmaxod_result,study_on_minimal_globalmaxod_result_1).
has_representation(study_on_minimal_globalmaxod_result_1,'vector of differences').
text_representation('vector of differences').
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link('results/wm_km_global_max_od.csv').
has_proposition(study_on_minimal_globalmaxod_result_1,study_on_minimal_globalmaxod_result_1_proc).
procedure(study_on_minimal_globalmaxod_result_1_proc).
has_proposition(study_on_minimal_globalmaxod_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_minimal_globalmaxod_result,study_on_minimal_globalmaxod_result_2).
has_representation(study_on_minimal_globalmaxod_result_2,'bar graph (histogram) plotting study_on_minimal_globalmaxod_result_1').
text_representation('bar graph (histogram) plotting study_on_minimal_globalmaxod_result_1').
has_proposition(study_on_minimal_globalmaxod_result_2,'results/overlayed_global_max_od0.8.tiff').
link('results/overlayed_global_max_od0.8.tiff').
has_proposition(study_on_minimal_globalmaxod_result_2,study_on_minimal_globalmaxod_result_2_proc).
procedure(study_on_minimal_globalmaxod_result_2_proc).
has_proposition(study_on_minimal_globalmaxod_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_minimal_globalmaxod,study_on_minimal_globalmaxod_conclusion).
conclusion(study_on_minimal_globalmaxod_conclusion).
has_representation(study_on_minimal_globalmaxod_conclusion,'The knockouts reach a higher global_max_od in minimal than the wild type').
text_representation('The knockouts reach a higher global_max_od in minimal than the wild type').
has_proposition(study_on_minimal_globalmaxod_conclusion,'obtain statistical mode of study_on_minimal_globalmaxod_result_1').
procedure('obtain statistical mode of study_on_minimal_globalmaxod_result_1').
text_representation('obtain statistical mode of study_on_minimal_globalmaxod_result_1').
has_part(study_on_minimal_globalmaxod,trial_on_minimal_globalmaxod_ygl202w).
trial(trial_on_minimal_globalmaxod_ygl202w).
has_agent(trial_on_minimal_globalmaxod_ygl202w,ygl202w).
strain(ygl202w).
has_proposition(trial_on_minimal_globalmaxod_ygl202w_1,trial_on_minimal_globalmaxod_ygl202w_1_design).
design(trial_on_minimal_globalmaxod_ygl202w_1_design).
has_proposition(trial_on_minimal_globalmaxod_ygl202w_1_design,trial_on_minimal_globalmaxod_ygl202w_1_factor).
factor(trial_on_minimal_globalmaxod_ygl202w_1_factor).
has_representation(trial_on_minimal_globalmaxod_ygl202w_1_factor,'presence or absence of ygl202w').
has_input(trial_on_minimal_globalmaxod_ygl202w_1,trial_on_minimal_globalmaxod_ygl202w_1_data).
data(trial_on_minimal_globalmaxod_ygl202w_1_data).
has_part(trial_on_minimal_globalmaxod_ygl202w_1_data,'48 values for global max od of knockout on minimal medium').
has_part(trial_on_minimal_globalmaxod_ygl202w_1_data,'48 values for global max od of wild type on minimal medium').
has_proposition(trial_on_minimal_globalmaxod_ygl202w_1_data,'../data/').
link('../data/').
located_in(trial_on_minimal_globalmaxod_ygl202w_1,'jan07-lyss1_expt001-plate001').
plate('jan07-lyss1_expt001-plate001').
has_proposition(trial_on_minimal_globalmaxod_ygl202w_1,trial_on_minimal_globalmaxod_ygl202w_1_result).
result(trial_on_minimal_globalmaxod_ygl202w_1_result).
has_part(trial_on_minimal_globalmaxod_ygl202w_1_result,trial_on_minimal_globalmaxod_ygl202w_1_result_1).
has_representation(trial_on_minimal_globalmaxod_ygl202w_1_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_globalmaxod_ygl202w_1_result_1,'results/global_max_od_growth_kmedians.txt').
link('results/global_max_od_growth_kmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ygl202w_1_result_1,trial_on_minimal_globalmaxod_ygl202w_1_result_1_proc).
procedure(trial_on_minimal_globalmaxod_ygl202w_1_result_1_proc).
has_representation(trial_on_minimal_globalmaxod_ygl202w_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_ygl202w_1_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_minimal_globalmaxod_ygl202w_1_result,trial_on_minimal_globalmaxod_ygl202w_1_result_2).
has_representation(trial_on_minimal_globalmaxod_ygl202w_1_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_globalmaxod_ygl202w_1_result_2,'results/global_max_od_growth_wmmedians.txt').
link('results/global_max_od_growth_wmmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ygl202w_1_result_2,trial_on_minimal_globalmaxod_ygl202w_1_result_2_proc).
procedure(trial_on_minimal_globalmaxod_ygl202w_1_result_2_proc).
has_representation(trial_on_minimal_globalmaxod_ygl202w_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_ygl202w_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_globalmaxod_ygl202w_2,trial_on_minimal_globalmaxod_ygl202w_2_design).
design(trial_on_minimal_globalmaxod_ygl202w_2_design).
has_proposition(trial_on_minimal_globalmaxod_ygl202w_2_design,trial_on_minimal_globalmaxod_ygl202w_2_factor).
factor(trial_on_minimal_globalmaxod_ygl202w_2_factor).
has_representation(trial_on_minimal_globalmaxod_ygl202w_2_factor,'presence or absence of ygl202w').
has_input(trial_on_minimal_globalmaxod_ygl202w_2,trial_on_minimal_globalmaxod_ygl202w_2_data).
data(trial_on_minimal_globalmaxod_ygl202w_2_data).
has_part(trial_on_minimal_globalmaxod_ygl202w_2_data,'48 values for global max od of knockout on minimal medium').
has_part(trial_on_minimal_globalmaxod_ygl202w_2_data,'48 values for global max od of wild type on minimal medium').
has_proposition(trial_on_minimal_globalmaxod_ygl202w_2_data,'../data/').
link('../data/').
located_in(trial_on_minimal_globalmaxod_ygl202w_2,'jan07-lyss1_expt001-plate002').
plate('jan07-lyss1_expt001-plate002').
has_proposition(trial_on_minimal_globalmaxod_ygl202w_2,trial_on_minimal_globalmaxod_ygl202w_2_result).
result(trial_on_minimal_globalmaxod_ygl202w_2_result).
has_part(trial_on_minimal_globalmaxod_ygl202w_2_result,trial_on_minimal_globalmaxod_ygl202w_2_result_1).
has_representation(trial_on_minimal_globalmaxod_ygl202w_2_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_globalmaxod_ygl202w_2_result_1,'results/global_max_od_growth_kmedians.txt').
link('results/global_max_od_growth_kmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ygl202w_2_result_1,trial_on_minimal_globalmaxod_ygl202w_2_result_1_proc).
procedure(trial_on_minimal_globalmaxod_ygl202w_2_result_1_proc).
has_representation(trial_on_minimal_globalmaxod_ygl202w_2_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_ygl202w_2_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_minimal_globalmaxod_ygl202w_2_result,trial_on_minimal_globalmaxod_ygl202w_2_result_2).
has_representation(trial_on_minimal_globalmaxod_ygl202w_2_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_globalmaxod_ygl202w_2_result_2,'results/global_max_od_growth_wmmedians.txt').
link('results/global_max_od_growth_wmmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ygl202w_2_result_2,trial_on_minimal_globalmaxod_ygl202w_2_result_2_proc).
procedure(trial_on_minimal_globalmaxod_ygl202w_2_result_2_proc).
has_representation(trial_on_minimal_globalmaxod_ygl202w_2_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_ygl202w_2_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_globalmaxod_ygl202w_3,trial_on_minimal_globalmaxod_ygl202w_3_design).
design(trial_on_minimal_globalmaxod_ygl202w_3_design).
has_proposition(trial_on_minimal_globalmaxod_ygl202w_3_design,trial_on_minimal_globalmaxod_ygl202w_3_factor).
factor(trial_on_minimal_globalmaxod_ygl202w_3_factor).
has_representation(trial_on_minimal_globalmaxod_ygl202w_3_factor,'presence or absence of ygl202w').
has_input(trial_on_minimal_globalmaxod_ygl202w_3,trial_on_minimal_globalmaxod_ygl202w_3_data).
data(trial_on_minimal_globalmaxod_ygl202w_3_data).
has_part(trial_on_minimal_globalmaxod_ygl202w_3_data,'48 values for global max od of knockout on minimal medium').
has_part(trial_on_minimal_globalmaxod_ygl202w_3_data,'48 values for global max od of wild type on minimal medium').
has_proposition(trial_on_minimal_globalmaxod_ygl202w_3_data,'../data/').
link('../data/').
located_in(trial_on_minimal_globalmaxod_ygl202w_3,'jan07-lyss1_expt001-plate003').
plate('jan07-lyss1_expt001-plate003').
has_proposition(trial_on_minimal_globalmaxod_ygl202w_3,trial_on_minimal_globalmaxod_ygl202w_3_result).
result(trial_on_minimal_globalmaxod_ygl202w_3_result).
has_part(trial_on_minimal_globalmaxod_ygl202w_3_result,trial_on_minimal_globalmaxod_ygl202w_3_result_1).
has_representation(trial_on_minimal_globalmaxod_ygl202w_3_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_globalmaxod_ygl202w_3_result_1,'results/global_max_od_growth_kmedians.txt').
link('results/global_max_od_growth_kmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ygl202w_3_result_1,trial_on_minimal_globalmaxod_ygl202w_3_result_1_proc).
procedure(trial_on_minimal_globalmaxod_ygl202w_3_result_1_proc).
has_representation(trial_on_minimal_globalmaxod_ygl202w_3_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_ygl202w_3_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_minimal_globalmaxod_ygl202w_3_result,trial_on_minimal_globalmaxod_ygl202w_3_result_2).
has_representation(trial_on_minimal_globalmaxod_ygl202w_3_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_globalmaxod_ygl202w_3_result_2,'results/global_max_od_growth_wmmedians.txt').
link('results/global_max_od_growth_wmmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ygl202w_3_result_2,trial_on_minimal_globalmaxod_ygl202w_3_result_2_proc).
procedure(trial_on_minimal_globalmaxod_ygl202w_3_result_2_proc).
has_representation(trial_on_minimal_globalmaxod_ygl202w_3_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_ygl202w_3_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_on_minimal_globalmaxod_ygl202w,trial_on_minimal_globalmaxod_ygl202w_results).
result(trial_on_minimal_globalmaxod_ygl202w_results).
has_part(trial_on_minimal_globalmaxod_ygl202w_results,trial_on_minimal_globalmaxod_ygl202w_results_1).
has_representation(trial_on_minimal_globalmaxod_ygl202w_results_1,'median of knockout medians missing ygl202w').
text_representation('median of knockout medians missing ygl202w').
has_proposition(trial_on_minimal_globalmaxod_ygl202w_results_1,trial_on_minimal_globalmaxod_ygl202w_results_1_proc).
procedure(trial_on_minimal_globalmaxod_ygl202w_results_1_proc).
has_proposition(trial_on_minimal_globalmaxod_ygl202w_results_1_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_minimal_globalmaxod_ygl202w_results,trial_on_minimal_globalmaxod_ygl202w_results_2).
has_representation(trial_on_minimal_globalmaxod_ygl202w_results_2,'median of wild type medians').
text_representation('median of wild type medians').
has_proposition(trial_on_minimal_globalmaxod_ygl202w_results_2,trial_on_minimal_globalmaxod_ygl202w_results_2_proc).
procedure(trial_on_minimal_globalmaxod_ygl202w_results_2_proc).
has_proposition(trial_on_minimal_globalmaxod_ygl202w_results_2_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_minimal_globalmaxod_ygl202w_results,trial_on_minimal_globalmaxod_ygl202w_results_3).
has_representation(trial_on_minimal_globalmaxod_ygl202w_results_3,'difference between trial_on_minimal_globalmaxod_ygl202w_results_1 and trial_on_minimal_globalmaxod_ygl202w_results_2').
text_representation('difference between trial_on_minimal_globalmaxod_ygl202w_results_1 and trial_on_minimal_globalmaxod_ygl202w_results_2').
has_proposition(study_on_minimal_globalmaxod,study_on_minimal_globalmaxod_result).
result(study_on_minimal_globalmaxod_result).
has_part(study_on_minimal_globalmaxod_result,study_on_minimal_globalmaxod_result_1).
has_representation(study_on_minimal_globalmaxod_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_minimal_globalmaxod_result_1,'results/wm_km_global_max_od.csv').
link('results/wm_km_global_max_od.csv').
has_proposition(study_on_minimal_globalmaxod_result_1,study_on_minimal_globalmaxod_result_1_proc).
procedure(study_on_minimal_globalmaxod_result_1_proc).
has_proposition(study_on_minimal_globalmaxod_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_minimal_globalmaxod_result,study_on_minimal_globalmaxod_result_2).
has_representation(study_on_minimal_globalmaxod_result_2,'bar graph (histogram) plotting study_on_minimal_globalmaxod_result_1').
text_representation('bar graph (histogram) plotting study_on_minimal_globalmaxod_result_1').
has_proposition(study_on_minimal_globalmaxod_result_2,'results/overlayed_global_max_od0.8.tiff').
link('results/overlayed_global_max_od0.8.tiff').
has_proposition(study_on_minimal_globalmaxod_result_2,study_on_minimal_globalmaxod_result_2_proc).
procedure(study_on_minimal_globalmaxod_result_2_proc).
has_proposition(study_on_minimal_globalmaxod_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_minimal_globalmaxod,study_on_minimal_globalmaxod_conclusion).
conclusion(study_on_minimal_globalmaxod_conclusion).
has_representation(study_on_minimal_globalmaxod_conclusion,'The knockouts reach a higher global_max_od in minimal than the wild type').
text_representation('The knockouts reach a higher global_max_od in minimal than the wild type').
has_proposition(study_on_minimal_globalmaxod_conclusion,'obtain statistical mode of study_on_minimal_globalmaxod_result_1').
procedure('obtain statistical mode of study_on_minimal_globalmaxod_result_1').
text_representation('obtain statistical mode of study_on_minimal_globalmaxod_result_1').
has_part(study_on_minimal_globalmaxod,trial_on_minimal_globalmaxod_ykl211c).
trial(trial_on_minimal_globalmaxod_ykl211c).
has_agent(trial_on_minimal_globalmaxod_ykl211c,ykl211c).
strain(ykl211c).
has_proposition(trial_on_minimal_globalmaxod_ykl211c_1,trial_on_minimal_globalmaxod_ykl211c_1_design).
design(trial_on_minimal_globalmaxod_ykl211c_1_design).
has_proposition(trial_on_minimal_globalmaxod_ykl211c_1_design,trial_on_minimal_globalmaxod_ykl211c_1_factor).
factor(trial_on_minimal_globalmaxod_ykl211c_1_factor).
has_representation(trial_on_minimal_globalmaxod_ykl211c_1_factor,'presence or absence of ykl211c').
has_input(trial_on_minimal_globalmaxod_ykl211c_1,trial_on_minimal_globalmaxod_ykl211c_1_data).
data(trial_on_minimal_globalmaxod_ykl211c_1_data).
has_part(trial_on_minimal_globalmaxod_ykl211c_1_data,'48 values for global max od of knockout on minimal medium').
has_part(trial_on_minimal_globalmaxod_ykl211c_1_data,'48 values for global max od of wild type on minimal medium').
has_proposition(trial_on_minimal_globalmaxod_ykl211c_1_data,'../data/').
link('../data/').
located_in(trial_on_minimal_globalmaxod_ykl211c_1,'nature-loop3_expt001-plate002').
plate('nature-loop3_expt001-plate002').
has_proposition(trial_on_minimal_globalmaxod_ykl211c_1,trial_on_minimal_globalmaxod_ykl211c_1_result).
result(trial_on_minimal_globalmaxod_ykl211c_1_result).
has_part(trial_on_minimal_globalmaxod_ykl211c_1_result,trial_on_minimal_globalmaxod_ykl211c_1_result_1).
has_representation(trial_on_minimal_globalmaxod_ykl211c_1_result_1,'median of knockout on minimal').
text_representation('median of knockout on minimal').
has_proposition(trial_on_minimal_globalmaxod_ykl211c_1_result_1,'results/global_max_od_growth_kmedians.txt').
link('results/global_max_od_growth_kmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ykl211c_1_result_1,trial_on_minimal_globalmaxod_ykl211c_1_result_1_proc).
procedure(trial_on_minimal_globalmaxod_ykl211c_1_result_1_proc).
has_representation(trial_on_minimal_globalmaxod_ykl211c_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_on_minimal_globalmaxod_ykl211c_1_result_1_proc,'procedures/plotKMedians.R').
link('proceduresplotKMedians.R').
has_part(trial_on_minimal_globalmaxod_ykl211c_1_result,trial_on_minimal_globalmaxod_ykl211c_1_result_2).
has_representation(trial_on_minimal_globalmaxod_ykl211c_1_result_2,'median of wild type on minimal').
text_representation('median of wild type on minimal').
has_proposition(trial_on_minimal_globalmaxod_ykl211c_1_result_2,'results/global_max_od_growth_wmmedians.txt').
link('results/global_max_od_growth_wmmedians.txt').
has_proposition(trial_on_minimal_globalmaxod_ykl211c_1_result_2,trial_on_minimal_globalmaxod_ykl211c_1_result_2_proc).
procedure(trial_on_minimal_globalmaxod_ykl211c_1_result_2_proc).
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text_representation('procedure for obtaining median').
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has_representation(trial_on_minimal_globalmaxod_ykl211c_results_1,'median of knockout medians missing ykl211c').
text_representation('median of knockout medians missing ykl211c').
has_proposition(trial_on_minimal_globalmaxod_ykl211c_results_1,trial_on_minimal_globalmaxod_ykl211c_results_1_proc).
procedure(trial_on_minimal_globalmaxod_ykl211c_results_1_proc).
has_proposition(trial_on_minimal_globalmaxod_ykl211c_results_1_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_minimal_globalmaxod_ykl211c_results,trial_on_minimal_globalmaxod_ykl211c_results_2).
has_representation(trial_on_minimal_globalmaxod_ykl211c_results_2,'median of wild type medians').
text_representation('median of wild type medians').
has_proposition(trial_on_minimal_globalmaxod_ykl211c_results_2,trial_on_minimal_globalmaxod_ykl211c_results_2_proc).
procedure(trial_on_minimal_globalmaxod_ykl211c_results_2_proc).
has_proposition(trial_on_minimal_globalmaxod_ykl211c_results_2_proc,'procedures/remove_dupl_medians.R').
link('procedures/remove_dupl_medians.R').
has_part(trial_on_minimal_globalmaxod_ykl211c_results,trial_on_minimal_globalmaxod_ykl211c_results_3).
has_representation(trial_on_minimal_globalmaxod_ykl211c_results_3,'difference between trial_on_minimal_globalmaxod_ykl211c_results_1 and trial_on_minimal_globalmaxod_ykl211c_results_2').
text_representation('difference between trial_on_minimal_globalmaxod_ykl211c_results_1 and trial_on_minimal_globalmaxod_ykl211c_results_2').
has_proposition(study_on_minimal_globalmaxod,study_on_minimal_globalmaxod_result).
result(study_on_minimal_globalmaxod_result).
has_part(study_on_minimal_globalmaxod_result,study_on_minimal_globalmaxod_result_1).
has_representation(study_on_minimal_globalmaxod_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_minimal_globalmaxod_result_1,'results/wm_km_global_max_od.csv').
link('results/wm_km_global_max_od.csv').
has_proposition(study_on_minimal_globalmaxod_result_1,study_on_minimal_globalmaxod_result_1_proc).
procedure(study_on_minimal_globalmaxod_result_1_proc).
has_proposition(study_on_minimal_globalmaxod_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_minimal_globalmaxod_result,study_on_minimal_globalmaxod_result_2).
has_representation(study_on_minimal_globalmaxod_result_2,'bar graph (histogram) plotting study_on_minimal_globalmaxod_result_1').
text_representation('bar graph (histogram) plotting study_on_minimal_globalmaxod_result_1').
has_proposition(study_on_minimal_globalmaxod_result_2,'results/overlayed_global_max_od0.8.tiff').
link('results/overlayed_global_max_od0.8.tiff').
has_proposition(study_on_minimal_globalmaxod_result_2,study_on_minimal_globalmaxod_result_2_proc).
procedure(study_on_minimal_globalmaxod_result_2_proc).
has_proposition(study_on_minimal_globalmaxod_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_minimal_globalmaxod,study_on_minimal_globalmaxod_conclusion).
conclusion(study_on_minimal_globalmaxod_conclusion).
has_representation(study_on_minimal_globalmaxod_conclusion,'The knockouts reach a higher global_max_od in minimal than the wild type').
text_representation('The knockouts reach a higher global_max_od in minimal than the wild type').
has_proposition(study_on_minimal_globalmaxod_conclusion,'obtain statistical mode of study_on_minimal_globalmaxod_result_1').
procedure('obtain statistical mode of study_on_minimal_globalmaxod_result_1').
text_representation('obtain statistical mode of study_on_minimal_globalmaxod_result_1').

%%%%%%%%%%%%%%%%%%%%%%
has_part(data_reuse,study_of_nutrients).
study(study_of_nutrients).
has_representation(study_of_nutrients,'study of the difference in the growth of WT in defined media').
text_representation('study of the difference in the growth of WT in defined media').
has_participant(study_of_nutrients,wt).

has_specified_input(study_of_nutrients,data_reuse_hset_hyp_1_3).
has_specified_input(study_of_nutrients,data_reuse_hset_hyp_2_3).

has_proposition(study_of_nutrients,study_of_nutrients_result).
result(study_of_nutrients_result).
has_part(study_of_nutrients_result,study_of_nutrients_lagtime_result).



has_part(study_of_nutrients,study_of_nutrients_lagtime).
study(study_of_nutrients_lagtime).
has_representation(study_of_nutrients_lagtime,'study of differences in the lag time of wildtype on minimal medium and wildtype on minimal medium with the addition of metabolites').
text_representation('study of differences in the lag time of wildtype on minimal medium and wildtype on minimal medium with the addition of metabolites').
has_proposition(study_of_nutrients_lagtime,study_of_nutrients_lagtime_hset).
hypotheses_set(study_of_nutrients_lagtime_hset).
has_proposition(study_of_nutrients_lagtime_hset,study_of_nutrients_lagtime_hset_hyp_1_1).
research_hypothesis(study_of_nutrients_lagtime_hset_hyp_1_1).
has_representation(study_of_nutrients_lagtime_hset_hyp_1_1,'There is a difference between the lag time of wildtype in minimal medium and wildtype in minimal medium with the addition of metabolites').
text_representation('There is a difference between the lag time of wildtype in minimal medium and wildtype in minimal medium with the addition of metabolites').
negative_hypothesis(study_of_nutrients_lagtime_hset_hyp_1_2).
has_representation(study_of_nutrients_lagtime_hset_hyp_1_2,'There is no difference between the lag time of wildtype in minimal medium and wildtype in minimal medium with the addition of metabolites').
text_representation('There is no difference between the lag time of wildtype in minimal medium and wildtype in minimal medium with the addition of metabolites').

has_part(study_of_nutrients_lagtime,trial_of_nutrients_lagtime_c00106).
trial(trial_of_nutrients_lagtime_c00106).
has_agent(trial_of_nutrients_lagtime_c00106,c00106).
metabolite(c00106).
has_proposition(trial_of_nutrients_lagtime_c00106_1,trial_of_nutrients_lagtime_c00106_1_design).
design(trial_of_nutrients_lagtime_c00106_1_design).
has_proposition(trial_of_nutrients_lagtime_c00106_1_design,trial_of_nutrients_lagtime_c00106_1_factor).
factor(trial_of_nutrients_lagtime_c00106_1_factor).
has_representation(trial_of_nutrients_lagtime_c00106_1_factor,'presence or absence of c00106').
has_input(trial_of_nutrients_lagtime_c00106_1,trial_of_nutrients_lagtime_c00106_1_data).
data(trial_of_nutrients_lagtime_c00106_1_data).
has_part(trial_of_nutrients_lagtime_c00106_1_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00106_1_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00106_1_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00106_1,'jan07-trial1_expt001-plate004').
plate('jan07-trial1_expt001-plate004').
has_proposition(trial_of_nutrients_lagtime_c00106_1,trial_of_nutrients_lagtime_c00106_1_result).
result(trial_of_nutrients_lagtime_c00106_1_result).
has_part(trial_of_nutrients_lagtime_c00106_1_result,trial_of_nutrients_lagtime_c00106_1_result_1).
has_representation(trial_of_nutrients_lagtime_c00106_1_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00106_1_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00106_1_result_1,trial_of_nutrients_lagtime_c00106_1_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00106_1_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00106_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00106_1_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00106_1_result,trial_of_nutrients_lagtime_c00106_1_result_2).
has_representation(trial_of_nutrients_lagtime_c00106_1_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00106_1_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00106_1_result_2,trial_of_nutrients_lagtime_c00106_1_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00106_1_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00106_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00106_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00106,trial_of_nutrients_lagtime_c00106_results).
result(trial_of_nutrients_lagtime_c00106_results).
has_part(trial_of_nutrients_lagtime_c00106_results,trial_of_nutrients_lagtime_c00106_results_1).
has_representation(trial_of_nutrients_lagtime_c00106_results_1,'median of wildtype medians in minimal').
text_representation('median of wildtype medians in minimal').
has_proposition(trial_of_nutrients_lagtime_c00106_results_1,trial_of_nutrients_lagtime_c00106_results_1_proc).
procedure(trial_of_nutrients_lagtime_c00106_results_1_proc).
has_proposition(trial_of_nutrients_lagtime_c00106_results_1_proc,'procedures/remove_dupl_medians_nut.R').
link('procedures/remove_dupl_medians_nut.R').
has_part(trial_of_nutrients_lagtime_c00106_results,trial_of_nutrients_lagtime_c00106_results_2).
has_representation(trial_of_nutrients_lagtime_c00106_results_2,'median of wildtype medians in minimal with metabolite').
text_representation('median of wildtype medians in minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00106_results_2,trial_of_nutrients_lagtime_c00106_results_2_proc).
procedure(trial_of_nutrients_lagtime_c00106_results_2_proc).
has_proposition(trial_of_nutrients_lagtime_c00106_results_2_proc,'procedures/remove_dupl_medians_nut.R').
link('procedures/remove_dupl_medians_nut.R').
has_part(trial_of_nutrients_lagtime_c00106_results,trial_of_nutrients_lagtime_c00106_results_3).
has_representation(trial_of_nutrients_lagtime_c00106_results_3,'difference between trial_of_nutrients_lagtime_c00106_results_1 and trial_of_nutrients_lagtime_c00106_results_2').
text_representation('difference between trial_of_nutrients_lagtime_c00106_results_1 and trial_of_nutrients_lagtime_c00106_results_2').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_result).
result(study_on_rich_growthrate_result).
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_1).
has_representation(study_on_rich_growthrate_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_rich_growthrate_result_1,'results/wr_kr_growth_rate.csv').
link('results/wr_kr_growth_rate.csv').
has_proposition(study_on_rich_growthrate_result_1,study_on_rich_growthrate_result_1_proc).
procedure(study_on_rich_growthrate_result_1_proc).
has_proposition(study_on_rich_growthrate_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_2).
has_representation(study_on_rich_growthrate_result_2,'bar graph (histogram) plotting study_on_rich_growthrate_result_1').
text_representation('bar graph (histogram) plotting study_on_rich_growthrate_result_1').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate1.tiff').
link('results/kr_wr_growth_rate1.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate2.tiff').
link('results/kr_wr_growth_rate2.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/overlayed_growth_rate.tiff').
link('results/overlayed_growth_rate.tiff').
has_proposition(study_on_rich_growthrate_result_2,study_on_rich_growthrate_result_2_proc).
procedure(study_on_rich_growthrate_result_2_proc).
has_proposition(study_on_rich_growthrate_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_conclusion).
conclusion(study_on_rich_growthrate_conclusion).
has_representation(study_on_rich_growthrate_conclusion,'The knockouts have higher growth rate in rich than the wild type').
text_representation('The knockouts have higher growth rate in rich than the wild type').
has_proposition(study_on_rich_growthrate_conclusion,'obtain statistical mode of study_on_rich_growthrate_result_1').
procedure('obtain statistical mode of study_on_rich_growthrate_result_1').
text_representation('obtain statistical mode of study_on_rich_growthrate_result_1').
has_part(study_of_nutrients_lagtime,trial_of_nutrients_lagtime_c00121).
trial(trial_of_nutrients_lagtime_c00121).
has_agent(trial_of_nutrients_lagtime_c00121,c00121).
metabolite(c00121).
has_proposition(trial_of_nutrients_lagtime_c00121_1,trial_of_nutrients_lagtime_c00121_1_design).
design(trial_of_nutrients_lagtime_c00121_1_design).
has_proposition(trial_of_nutrients_lagtime_c00121_1_design,trial_of_nutrients_lagtime_c00121_1_factor).
factor(trial_of_nutrients_lagtime_c00121_1_factor).
has_representation(trial_of_nutrients_lagtime_c00121_1_factor,'presence or absence of c00121').
has_input(trial_of_nutrients_lagtime_c00121_1,trial_of_nutrients_lagtime_c00121_1_data).
data(trial_of_nutrients_lagtime_c00121_1_data).
has_part(trial_of_nutrients_lagtime_c00121_1_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00121_1_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00121_1_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00121_1,'mar07-trial4_expt1-plate006').
plate('mar07-trial4_expt1-plate006').
has_proposition(trial_of_nutrients_lagtime_c00121_1,trial_of_nutrients_lagtime_c00121_1_result).
result(trial_of_nutrients_lagtime_c00121_1_result).
has_part(trial_of_nutrients_lagtime_c00121_1_result,trial_of_nutrients_lagtime_c00121_1_result_1).
has_representation(trial_of_nutrients_lagtime_c00121_1_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00121_1_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00121_1_result_1,trial_of_nutrients_lagtime_c00121_1_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00121_1_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00121_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00121_1_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00121_1_result,trial_of_nutrients_lagtime_c00121_1_result_2).
has_representation(trial_of_nutrients_lagtime_c00121_1_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00121_1_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00121_1_result_2,trial_of_nutrients_lagtime_c00121_1_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00121_1_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00121_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00121_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00121,trial_of_nutrients_lagtime_c00121_results).
result(trial_of_nutrients_lagtime_c00121_results).
has_part(trial_of_nutrients_lagtime_c00121_results,trial_of_nutrients_lagtime_c00121_results_1).
has_representation(trial_of_nutrients_lagtime_c00121_results_1,'median of wildtype medians in minimal').
text_representation('median of wildtype medians in minimal').
has_proposition(trial_of_nutrients_lagtime_c00121_results_1,trial_of_nutrients_lagtime_c00121_results_1_proc).
procedure(trial_of_nutrients_lagtime_c00121_results_1_proc).
has_proposition(trial_of_nutrients_lagtime_c00121_results_1_proc,'procedures/remove_dupl_medians_nut.R').
link('procedures/remove_dupl_medians_nut.R').
has_part(trial_of_nutrients_lagtime_c00121_results,trial_of_nutrients_lagtime_c00121_results_2).
has_representation(trial_of_nutrients_lagtime_c00121_results_2,'median of wildtype medians in minimal with metabolite').
text_representation('median of wildtype medians in minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00121_results_2,trial_of_nutrients_lagtime_c00121_results_2_proc).
procedure(trial_of_nutrients_lagtime_c00121_results_2_proc).
has_proposition(trial_of_nutrients_lagtime_c00121_results_2_proc,'procedures/remove_dupl_medians_nut.R').
link('procedures/remove_dupl_medians_nut.R').
has_part(trial_of_nutrients_lagtime_c00121_results,trial_of_nutrients_lagtime_c00121_results_3).
has_representation(trial_of_nutrients_lagtime_c00121_results_3,'difference between trial_of_nutrients_lagtime_c00121_results_1 and trial_of_nutrients_lagtime_c00121_results_2').
text_representation('difference between trial_of_nutrients_lagtime_c00121_results_1 and trial_of_nutrients_lagtime_c00121_results_2').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_result).
result(study_on_rich_growthrate_result).
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_1).
has_representation(study_on_rich_growthrate_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_rich_growthrate_result_1,'results/wr_kr_growth_rate.csv').
link('results/wr_kr_growth_rate.csv').
has_proposition(study_on_rich_growthrate_result_1,study_on_rich_growthrate_result_1_proc).
procedure(study_on_rich_growthrate_result_1_proc).
has_proposition(study_on_rich_growthrate_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_2).
has_representation(study_on_rich_growthrate_result_2,'bar graph (histogram) plotting study_on_rich_growthrate_result_1').
text_representation('bar graph (histogram) plotting study_on_rich_growthrate_result_1').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate1.tiff').
link('results/kr_wr_growth_rate1.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate2.tiff').
link('results/kr_wr_growth_rate2.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/overlayed_growth_rate.tiff').
link('results/overlayed_growth_rate.tiff').
has_proposition(study_on_rich_growthrate_result_2,study_on_rich_growthrate_result_2_proc).
procedure(study_on_rich_growthrate_result_2_proc).
has_proposition(study_on_rich_growthrate_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_conclusion).
conclusion(study_on_rich_growthrate_conclusion).
has_representation(study_on_rich_growthrate_conclusion,'The knockouts have higher growth rate in rich than the wild type').
text_representation('The knockouts have higher growth rate in rich than the wild type').
has_proposition(study_on_rich_growthrate_conclusion,'obtain statistical mode of study_on_rich_growthrate_result_1').
procedure('obtain statistical mode of study_on_rich_growthrate_result_1').
text_representation('obtain statistical mode of study_on_rich_growthrate_result_1').
has_part(study_of_nutrients_lagtime,trial_of_nutrients_lagtime_c00364).
trial(trial_of_nutrients_lagtime_c00364).
has_agent(trial_of_nutrients_lagtime_c00364,c00364).
metabolite(c00364).
has_proposition(trial_of_nutrients_lagtime_c00364_1,trial_of_nutrients_lagtime_c00364_1_design).
design(trial_of_nutrients_lagtime_c00364_1_design).
has_proposition(trial_of_nutrients_lagtime_c00364_1_design,trial_of_nutrients_lagtime_c00364_1_factor).
factor(trial_of_nutrients_lagtime_c00364_1_factor).
has_representation(trial_of_nutrients_lagtime_c00364_1_factor,'presence or absence of c00364').
has_input(trial_of_nutrients_lagtime_c00364_1,trial_of_nutrients_lagtime_c00364_1_data).
data(trial_of_nutrients_lagtime_c00364_1_data).
has_part(trial_of_nutrients_lagtime_c00364_1_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00364_1_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00364_1_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00364_1,'jan07-trial2_expt001-plate003').
plate('jan07-trial2_expt001-plate003').
has_proposition(trial_of_nutrients_lagtime_c00364_1,trial_of_nutrients_lagtime_c00364_1_result).
result(trial_of_nutrients_lagtime_c00364_1_result).
has_part(trial_of_nutrients_lagtime_c00364_1_result,trial_of_nutrients_lagtime_c00364_1_result_1).
has_representation(trial_of_nutrients_lagtime_c00364_1_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00364_1_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00364_1_result_1,trial_of_nutrients_lagtime_c00364_1_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00364_1_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00364_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00364_1_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00364_1_result,trial_of_nutrients_lagtime_c00364_1_result_2).
has_representation(trial_of_nutrients_lagtime_c00364_1_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00364_1_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00364_1_result_2,trial_of_nutrients_lagtime_c00364_1_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00364_1_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00364_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00364_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00364_2,trial_of_nutrients_lagtime_c00364_2_design).
design(trial_of_nutrients_lagtime_c00364_2_design).
has_proposition(trial_of_nutrients_lagtime_c00364_2_design,trial_of_nutrients_lagtime_c00364_2_factor).
factor(trial_of_nutrients_lagtime_c00364_2_factor).
has_representation(trial_of_nutrients_lagtime_c00364_2_factor,'presence or absence of c00364').
has_input(trial_of_nutrients_lagtime_c00364_2,trial_of_nutrients_lagtime_c00364_2_data).
data(trial_of_nutrients_lagtime_c00364_2_data).
has_part(trial_of_nutrients_lagtime_c00364_2_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00364_2_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00364_2_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00364_2,'jan07-trial2_expt001-plate007').
plate('jan07-trial2_expt001-plate007').
has_proposition(trial_of_nutrients_lagtime_c00364_2,trial_of_nutrients_lagtime_c00364_2_result).
result(trial_of_nutrients_lagtime_c00364_2_result).
has_part(trial_of_nutrients_lagtime_c00364_2_result,trial_of_nutrients_lagtime_c00364_2_result_1).
has_representation(trial_of_nutrients_lagtime_c00364_2_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00364_2_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00364_2_result_1,trial_of_nutrients_lagtime_c00364_2_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00364_2_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00364_2_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00364_2_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00364_2_result,trial_of_nutrients_lagtime_c00364_2_result_2).
has_representation(trial_of_nutrients_lagtime_c00364_2_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00364_2_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00364_2_result_2,trial_of_nutrients_lagtime_c00364_2_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00364_2_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00364_2_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00364_2_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00364,trial_of_nutrients_lagtime_c00364_results).
result(trial_of_nutrients_lagtime_c00364_results).
has_part(trial_of_nutrients_lagtime_c00364_results,trial_of_nutrients_lagtime_c00364_results_1).
has_representation(trial_of_nutrients_lagtime_c00364_results_1,'median of wildtype medians in minimal').
text_representation('median of wildtype medians in minimal').
has_proposition(trial_of_nutrients_lagtime_c00364_results_1,trial_of_nutrients_lagtime_c00364_results_1_proc).
procedure(trial_of_nutrients_lagtime_c00364_results_1_proc).
has_proposition(trial_of_nutrients_lagtime_c00364_results_1_proc,'procedures/remove_dupl_medians_nut.R').
link('procedures/remove_dupl_medians_nut.R').
has_part(trial_of_nutrients_lagtime_c00364_results,trial_of_nutrients_lagtime_c00364_results_2).
has_representation(trial_of_nutrients_lagtime_c00364_results_2,'median of wildtype medians in minimal with metabolite').
text_representation('median of wildtype medians in minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00364_results_2,trial_of_nutrients_lagtime_c00364_results_2_proc).
procedure(trial_of_nutrients_lagtime_c00364_results_2_proc).
has_proposition(trial_of_nutrients_lagtime_c00364_results_2_proc,'procedures/remove_dupl_medians_nut.R').
link('procedures/remove_dupl_medians_nut.R').
has_part(trial_of_nutrients_lagtime_c00364_results,trial_of_nutrients_lagtime_c00364_results_3).
has_representation(trial_of_nutrients_lagtime_c00364_results_3,'difference between trial_of_nutrients_lagtime_c00364_results_1 and trial_of_nutrients_lagtime_c00364_results_2').
text_representation('difference between trial_of_nutrients_lagtime_c00364_results_1 and trial_of_nutrients_lagtime_c00364_results_2').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_result).
result(study_on_rich_growthrate_result).
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_1).
has_representation(study_on_rich_growthrate_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_rich_growthrate_result_1,'results/wr_kr_growth_rate.csv').
link('results/wr_kr_growth_rate.csv').
has_proposition(study_on_rich_growthrate_result_1,study_on_rich_growthrate_result_1_proc).
procedure(study_on_rich_growthrate_result_1_proc).
has_proposition(study_on_rich_growthrate_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_2).
has_representation(study_on_rich_growthrate_result_2,'bar graph (histogram) plotting study_on_rich_growthrate_result_1').
text_representation('bar graph (histogram) plotting study_on_rich_growthrate_result_1').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate1.tiff').
link('results/kr_wr_growth_rate1.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate2.tiff').
link('results/kr_wr_growth_rate2.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/overlayed_growth_rate.tiff').
link('results/overlayed_growth_rate.tiff').
has_proposition(study_on_rich_growthrate_result_2,study_on_rich_growthrate_result_2_proc).
procedure(study_on_rich_growthrate_result_2_proc).
has_proposition(study_on_rich_growthrate_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_conclusion).
conclusion(study_on_rich_growthrate_conclusion).
has_representation(study_on_rich_growthrate_conclusion,'The knockouts have higher growth rate in rich than the wild type').
text_representation('The knockouts have higher growth rate in rich than the wild type').
has_proposition(study_on_rich_growthrate_conclusion,'obtain statistical mode of study_on_rich_growthrate_result_1').
procedure('obtain statistical mode of study_on_rich_growthrate_result_1').
text_representation('obtain statistical mode of study_on_rich_growthrate_result_1').
has_part(study_of_nutrients_lagtime,trial_of_nutrients_lagtime_c00101).
trial(trial_of_nutrients_lagtime_c00101).
has_agent(trial_of_nutrients_lagtime_c00101,c00101).
metabolite(c00101).
has_proposition(trial_of_nutrients_lagtime_c00101_1,trial_of_nutrients_lagtime_c00101_1_design).
design(trial_of_nutrients_lagtime_c00101_1_design).
has_proposition(trial_of_nutrients_lagtime_c00101_1_design,trial_of_nutrients_lagtime_c00101_1_factor).
factor(trial_of_nutrients_lagtime_c00101_1_factor).
has_representation(trial_of_nutrients_lagtime_c00101_1_factor,'presence or absence of c00101').
has_input(trial_of_nutrients_lagtime_c00101_1,trial_of_nutrients_lagtime_c00101_1_data).
data(trial_of_nutrients_lagtime_c00101_1_data).
has_part(trial_of_nutrients_lagtime_c00101_1_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00101_1_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00101_1_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00101_1,'feb07-trial1_expt001-plate001').
plate('feb07-trial1_expt001-plate001').
has_proposition(trial_of_nutrients_lagtime_c00101_1,trial_of_nutrients_lagtime_c00101_1_result).
result(trial_of_nutrients_lagtime_c00101_1_result).
has_part(trial_of_nutrients_lagtime_c00101_1_result,trial_of_nutrients_lagtime_c00101_1_result_1).
has_representation(trial_of_nutrients_lagtime_c00101_1_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00101_1_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00101_1_result_1,trial_of_nutrients_lagtime_c00101_1_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00101_1_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00101_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00101_1_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00101_1_result,trial_of_nutrients_lagtime_c00101_1_result_2).
has_representation(trial_of_nutrients_lagtime_c00101_1_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00101_1_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00101_1_result_2,trial_of_nutrients_lagtime_c00101_1_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00101_1_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00101_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00101_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00101_2,trial_of_nutrients_lagtime_c00101_2_design).
design(trial_of_nutrients_lagtime_c00101_2_design).
has_proposition(trial_of_nutrients_lagtime_c00101_2_design,trial_of_nutrients_lagtime_c00101_2_factor).
factor(trial_of_nutrients_lagtime_c00101_2_factor).
has_representation(trial_of_nutrients_lagtime_c00101_2_factor,'presence or absence of c00101').
has_input(trial_of_nutrients_lagtime_c00101_2,trial_of_nutrients_lagtime_c00101_2_data).
data(trial_of_nutrients_lagtime_c00101_2_data).
has_part(trial_of_nutrients_lagtime_c00101_2_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00101_2_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00101_2_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00101_2,'jan07-trial2_expt001-plate005').
plate('jan07-trial2_expt001-plate005').
has_proposition(trial_of_nutrients_lagtime_c00101_2,trial_of_nutrients_lagtime_c00101_2_result).
result(trial_of_nutrients_lagtime_c00101_2_result).
has_part(trial_of_nutrients_lagtime_c00101_2_result,trial_of_nutrients_lagtime_c00101_2_result_1).
has_representation(trial_of_nutrients_lagtime_c00101_2_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00101_2_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00101_2_result_1,trial_of_nutrients_lagtime_c00101_2_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00101_2_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00101_2_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00101_2_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00101_2_result,trial_of_nutrients_lagtime_c00101_2_result_2).
has_representation(trial_of_nutrients_lagtime_c00101_2_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00101_2_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00101_2_result_2,trial_of_nutrients_lagtime_c00101_2_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00101_2_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00101_2_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00101_2_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00101_3,trial_of_nutrients_lagtime_c00101_3_design).
design(trial_of_nutrients_lagtime_c00101_3_design).
has_proposition(trial_of_nutrients_lagtime_c00101_3_design,trial_of_nutrients_lagtime_c00101_3_factor).
factor(trial_of_nutrients_lagtime_c00101_3_factor).
has_representation(trial_of_nutrients_lagtime_c00101_3_factor,'presence or absence of c00101').
has_input(trial_of_nutrients_lagtime_c00101_3,trial_of_nutrients_lagtime_c00101_3_data).
data(trial_of_nutrients_lagtime_c00101_3_data).
has_part(trial_of_nutrients_lagtime_c00101_3_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00101_3_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00101_3_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00101_3,'jan07-trial2_expt001-plate009').
plate('jan07-trial2_expt001-plate009').
has_proposition(trial_of_nutrients_lagtime_c00101_3,trial_of_nutrients_lagtime_c00101_3_result).
result(trial_of_nutrients_lagtime_c00101_3_result).
has_part(trial_of_nutrients_lagtime_c00101_3_result,trial_of_nutrients_lagtime_c00101_3_result_1).
has_representation(trial_of_nutrients_lagtime_c00101_3_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00101_3_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00101_3_result_1,trial_of_nutrients_lagtime_c00101_3_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00101_3_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00101_3_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00101_3_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00101_3_result,trial_of_nutrients_lagtime_c00101_3_result_2).
has_representation(trial_of_nutrients_lagtime_c00101_3_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00101_3_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00101_3_result_2,trial_of_nutrients_lagtime_c00101_3_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00101_3_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00101_3_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00101_3_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00101,trial_of_nutrients_lagtime_c00101_results).
result(trial_of_nutrients_lagtime_c00101_results).
has_part(trial_of_nutrients_lagtime_c00101_results,trial_of_nutrients_lagtime_c00101_results_1).
has_representation(trial_of_nutrients_lagtime_c00101_results_1,'median of wildtype medians in minimal').
text_representation('median of wildtype medians in minimal').
has_proposition(trial_of_nutrients_lagtime_c00101_results_1,trial_of_nutrients_lagtime_c00101_results_1_proc).
procedure(trial_of_nutrients_lagtime_c00101_results_1_proc).
has_proposition(trial_of_nutrients_lagtime_c00101_results_1_proc,'procedures/remove_dupl_medians_nut.R').
link('procedures/remove_dupl_medians_nut.R').
has_part(trial_of_nutrients_lagtime_c00101_results,trial_of_nutrients_lagtime_c00101_results_2).
has_representation(trial_of_nutrients_lagtime_c00101_results_2,'median of wildtype medians in minimal with metabolite').
text_representation('median of wildtype medians in minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00101_results_2,trial_of_nutrients_lagtime_c00101_results_2_proc).
procedure(trial_of_nutrients_lagtime_c00101_results_2_proc).
has_proposition(trial_of_nutrients_lagtime_c00101_results_2_proc,'procedures/remove_dupl_medians_nut.R').
link('procedures/remove_dupl_medians_nut.R').
has_part(trial_of_nutrients_lagtime_c00101_results,trial_of_nutrients_lagtime_c00101_results_3).
has_representation(trial_of_nutrients_lagtime_c00101_results_3,'difference between trial_of_nutrients_lagtime_c00101_results_1 and trial_of_nutrients_lagtime_c00101_results_2').
text_representation('difference between trial_of_nutrients_lagtime_c00101_results_1 and trial_of_nutrients_lagtime_c00101_results_2').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_result).
result(study_on_rich_growthrate_result).
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_1).
has_representation(study_on_rich_growthrate_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_rich_growthrate_result_1,'results/wr_kr_growth_rate.csv').
link('results/wr_kr_growth_rate.csv').
has_proposition(study_on_rich_growthrate_result_1,study_on_rich_growthrate_result_1_proc).
procedure(study_on_rich_growthrate_result_1_proc).
has_proposition(study_on_rich_growthrate_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_2).
has_representation(study_on_rich_growthrate_result_2,'bar graph (histogram) plotting study_on_rich_growthrate_result_1').
text_representation('bar graph (histogram) plotting study_on_rich_growthrate_result_1').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate1.tiff').
link('results/kr_wr_growth_rate1.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate2.tiff').
link('results/kr_wr_growth_rate2.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/overlayed_growth_rate.tiff').
link('results/overlayed_growth_rate.tiff').
has_proposition(study_on_rich_growthrate_result_2,study_on_rich_growthrate_result_2_proc).
procedure(study_on_rich_growthrate_result_2_proc).
has_proposition(study_on_rich_growthrate_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_conclusion).
conclusion(study_on_rich_growthrate_conclusion).
has_representation(study_on_rich_growthrate_conclusion,'The knockouts have higher growth rate in rich than the wild type').
text_representation('The knockouts have higher growth rate in rich than the wild type').
has_proposition(study_on_rich_growthrate_conclusion,'obtain statistical mode of study_on_rich_growthrate_result_1').
procedure('obtain statistical mode of study_on_rich_growthrate_result_1').
text_representation('obtain statistical mode of study_on_rich_growthrate_result_1').
has_part(study_of_nutrients_lagtime,trial_of_nutrients_lagtime_c00065).
trial(trial_of_nutrients_lagtime_c00065).
has_agent(trial_of_nutrients_lagtime_c00065,c00065).
metabolite(c00065).
has_proposition(trial_of_nutrients_lagtime_c00065_1,trial_of_nutrients_lagtime_c00065_1_design).
design(trial_of_nutrients_lagtime_c00065_1_design).
has_proposition(trial_of_nutrients_lagtime_c00065_1_design,trial_of_nutrients_lagtime_c00065_1_factor).
factor(trial_of_nutrients_lagtime_c00065_1_factor).
has_representation(trial_of_nutrients_lagtime_c00065_1_factor,'presence or absence of c00065').
has_input(trial_of_nutrients_lagtime_c00065_1,trial_of_nutrients_lagtime_c00065_1_data).
data(trial_of_nutrients_lagtime_c00065_1_data).
has_part(trial_of_nutrients_lagtime_c00065_1_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00065_1_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00065_1_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00065_1,'feb07-trial1_expt001-plate003').
plate('feb07-trial1_expt001-plate003').
has_proposition(trial_of_nutrients_lagtime_c00065_1,trial_of_nutrients_lagtime_c00065_1_result).
result(trial_of_nutrients_lagtime_c00065_1_result).
has_part(trial_of_nutrients_lagtime_c00065_1_result,trial_of_nutrients_lagtime_c00065_1_result_1).
has_representation(trial_of_nutrients_lagtime_c00065_1_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00065_1_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00065_1_result_1,trial_of_nutrients_lagtime_c00065_1_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00065_1_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00065_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00065_1_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00065_1_result,trial_of_nutrients_lagtime_c00065_1_result_2).
has_representation(trial_of_nutrients_lagtime_c00065_1_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00065_1_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00065_1_result_2,trial_of_nutrients_lagtime_c00065_1_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00065_1_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00065_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00065_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00065_2,trial_of_nutrients_lagtime_c00065_2_design).
design(trial_of_nutrients_lagtime_c00065_2_design).
has_proposition(trial_of_nutrients_lagtime_c00065_2_design,trial_of_nutrients_lagtime_c00065_2_factor).
factor(trial_of_nutrients_lagtime_c00065_2_factor).
has_representation(trial_of_nutrients_lagtime_c00065_2_factor,'presence or absence of c00065').
has_input(trial_of_nutrients_lagtime_c00065_2,trial_of_nutrients_lagtime_c00065_2_data).
data(trial_of_nutrients_lagtime_c00065_2_data).
has_part(trial_of_nutrients_lagtime_c00065_2_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00065_2_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00065_2_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00065_2,'feb07-trial1_expt001-plate010').
plate('feb07-trial1_expt001-plate010').
has_proposition(trial_of_nutrients_lagtime_c00065_2,trial_of_nutrients_lagtime_c00065_2_result).
result(trial_of_nutrients_lagtime_c00065_2_result).
has_part(trial_of_nutrients_lagtime_c00065_2_result,trial_of_nutrients_lagtime_c00065_2_result_1).
has_representation(trial_of_nutrients_lagtime_c00065_2_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00065_2_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00065_2_result_1,trial_of_nutrients_lagtime_c00065_2_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00065_2_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00065_2_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00065_2_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00065_2_result,trial_of_nutrients_lagtime_c00065_2_result_2).
has_representation(trial_of_nutrients_lagtime_c00065_2_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00065_2_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00065_2_result_2,trial_of_nutrients_lagtime_c00065_2_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00065_2_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00065_2_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00065_2_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00065,trial_of_nutrients_lagtime_c00065_results).
result(trial_of_nutrients_lagtime_c00065_results).
has_part(trial_of_nutrients_lagtime_c00065_results,trial_of_nutrients_lagtime_c00065_results_1).
has_representation(trial_of_nutrients_lagtime_c00065_results_1,'median of wildtype medians in minimal').
text_representation('median of wildtype medians in minimal').
has_proposition(trial_of_nutrients_lagtime_c00065_results_1,trial_of_nutrients_lagtime_c00065_results_1_proc).
procedure(trial_of_nutrients_lagtime_c00065_results_1_proc).
has_proposition(trial_of_nutrients_lagtime_c00065_results_1_proc,'procedures/remove_dupl_medians_nut.R').
link('procedures/remove_dupl_medians_nut.R').
has_part(trial_of_nutrients_lagtime_c00065_results,trial_of_nutrients_lagtime_c00065_results_2).
has_representation(trial_of_nutrients_lagtime_c00065_results_2,'median of wildtype medians in minimal with metabolite').
text_representation('median of wildtype medians in minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00065_results_2,trial_of_nutrients_lagtime_c00065_results_2_proc).
procedure(trial_of_nutrients_lagtime_c00065_results_2_proc).
has_proposition(trial_of_nutrients_lagtime_c00065_results_2_proc,'procedures/remove_dupl_medians_nut.R').
link('procedures/remove_dupl_medians_nut.R').
has_part(trial_of_nutrients_lagtime_c00065_results,trial_of_nutrients_lagtime_c00065_results_3).
has_representation(trial_of_nutrients_lagtime_c00065_results_3,'difference between trial_of_nutrients_lagtime_c00065_results_1 and trial_of_nutrients_lagtime_c00065_results_2').
text_representation('difference between trial_of_nutrients_lagtime_c00065_results_1 and trial_of_nutrients_lagtime_c00065_results_2').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_result).
result(study_on_rich_growthrate_result).
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_1).
has_representation(study_on_rich_growthrate_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_rich_growthrate_result_1,'results/wr_kr_growth_rate.csv').
link('results/wr_kr_growth_rate.csv').
has_proposition(study_on_rich_growthrate_result_1,study_on_rich_growthrate_result_1_proc).
procedure(study_on_rich_growthrate_result_1_proc).
has_proposition(study_on_rich_growthrate_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_2).
has_representation(study_on_rich_growthrate_result_2,'bar graph (histogram) plotting study_on_rich_growthrate_result_1').
text_representation('bar graph (histogram) plotting study_on_rich_growthrate_result_1').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate1.tiff').
link('results/kr_wr_growth_rate1.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate2.tiff').
link('results/kr_wr_growth_rate2.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/overlayed_growth_rate.tiff').
link('results/overlayed_growth_rate.tiff').
has_proposition(study_on_rich_growthrate_result_2,study_on_rich_growthrate_result_2_proc).
procedure(study_on_rich_growthrate_result_2_proc).
has_proposition(study_on_rich_growthrate_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_conclusion).
conclusion(study_on_rich_growthrate_conclusion).
has_representation(study_on_rich_growthrate_conclusion,'The knockouts have higher growth rate in rich than the wild type').
text_representation('The knockouts have higher growth rate in rich than the wild type').
has_proposition(study_on_rich_growthrate_conclusion,'obtain statistical mode of study_on_rich_growthrate_result_1').
procedure('obtain statistical mode of study_on_rich_growthrate_result_1').
text_representation('obtain statistical mode of study_on_rich_growthrate_result_1').
has_part(study_of_nutrients_lagtime,trial_of_nutrients_lagtime_c00064).
trial(trial_of_nutrients_lagtime_c00064).
has_agent(trial_of_nutrients_lagtime_c00064,c00064).
metabolite(c00064).
has_proposition(trial_of_nutrients_lagtime_c00064_1,trial_of_nutrients_lagtime_c00064_1_design).
design(trial_of_nutrients_lagtime_c00064_1_design).
has_proposition(trial_of_nutrients_lagtime_c00064_1_design,trial_of_nutrients_lagtime_c00064_1_factor).
factor(trial_of_nutrients_lagtime_c00064_1_factor).
has_representation(trial_of_nutrients_lagtime_c00064_1_factor,'presence or absence of c00064').
has_input(trial_of_nutrients_lagtime_c00064_1,trial_of_nutrients_lagtime_c00064_1_data).
data(trial_of_nutrients_lagtime_c00064_1_data).
has_part(trial_of_nutrients_lagtime_c00064_1_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00064_1_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00064_1_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00064_1,'feb07-trial1_expt001-plate005').
plate('feb07-trial1_expt001-plate005').
has_proposition(trial_of_nutrients_lagtime_c00064_1,trial_of_nutrients_lagtime_c00064_1_result).
result(trial_of_nutrients_lagtime_c00064_1_result).
has_part(trial_of_nutrients_lagtime_c00064_1_result,trial_of_nutrients_lagtime_c00064_1_result_1).
has_representation(trial_of_nutrients_lagtime_c00064_1_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00064_1_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00064_1_result_1,trial_of_nutrients_lagtime_c00064_1_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00064_1_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00064_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00064_1_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00064_1_result,trial_of_nutrients_lagtime_c00064_1_result_2).
has_representation(trial_of_nutrients_lagtime_c00064_1_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00064_1_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00064_1_result_2,trial_of_nutrients_lagtime_c00064_1_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00064_1_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00064_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00064_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00064_2,trial_of_nutrients_lagtime_c00064_2_design).
design(trial_of_nutrients_lagtime_c00064_2_design).
has_proposition(trial_of_nutrients_lagtime_c00064_2_design,trial_of_nutrients_lagtime_c00064_2_factor).
factor(trial_of_nutrients_lagtime_c00064_2_factor).
has_representation(trial_of_nutrients_lagtime_c00064_2_factor,'presence or absence of c00064').
has_input(trial_of_nutrients_lagtime_c00064_2,trial_of_nutrients_lagtime_c00064_2_data).
data(trial_of_nutrients_lagtime_c00064_2_data).
has_part(trial_of_nutrients_lagtime_c00064_2_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00064_2_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00064_2_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00064_2,'feb07-trial1_expt001-plate006').
plate('feb07-trial1_expt001-plate006').
has_proposition(trial_of_nutrients_lagtime_c00064_2,trial_of_nutrients_lagtime_c00064_2_result).
result(trial_of_nutrients_lagtime_c00064_2_result).
has_part(trial_of_nutrients_lagtime_c00064_2_result,trial_of_nutrients_lagtime_c00064_2_result_1).
has_representation(trial_of_nutrients_lagtime_c00064_2_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00064_2_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00064_2_result_1,trial_of_nutrients_lagtime_c00064_2_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00064_2_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00064_2_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00064_2_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00064_2_result,trial_of_nutrients_lagtime_c00064_2_result_2).
has_representation(trial_of_nutrients_lagtime_c00064_2_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00064_2_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00064_2_result_2,trial_of_nutrients_lagtime_c00064_2_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00064_2_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00064_2_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00064_2_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00064_3,trial_of_nutrients_lagtime_c00064_3_design).
design(trial_of_nutrients_lagtime_c00064_3_design).
has_proposition(trial_of_nutrients_lagtime_c00064_3_design,trial_of_nutrients_lagtime_c00064_3_factor).
factor(trial_of_nutrients_lagtime_c00064_3_factor).
has_representation(trial_of_nutrients_lagtime_c00064_3_factor,'presence or absence of c00064').
has_input(trial_of_nutrients_lagtime_c00064_3,trial_of_nutrients_lagtime_c00064_3_data).
data(trial_of_nutrients_lagtime_c00064_3_data).
has_part(trial_of_nutrients_lagtime_c00064_3_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00064_3_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00064_3_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00064_3,'feb07-trial1_expt001-plate008').
plate('feb07-trial1_expt001-plate008').
has_proposition(trial_of_nutrients_lagtime_c00064_3,trial_of_nutrients_lagtime_c00064_3_result).
result(trial_of_nutrients_lagtime_c00064_3_result).
has_part(trial_of_nutrients_lagtime_c00064_3_result,trial_of_nutrients_lagtime_c00064_3_result_1).
has_representation(trial_of_nutrients_lagtime_c00064_3_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00064_3_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00064_3_result_1,trial_of_nutrients_lagtime_c00064_3_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00064_3_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00064_3_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00064_3_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00064_3_result,trial_of_nutrients_lagtime_c00064_3_result_2).
has_representation(trial_of_nutrients_lagtime_c00064_3_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00064_3_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00064_3_result_2,trial_of_nutrients_lagtime_c00064_3_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00064_3_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00064_3_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00064_3_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00064_4,trial_of_nutrients_lagtime_c00064_4_design).
design(trial_of_nutrients_lagtime_c00064_4_design).
has_proposition(trial_of_nutrients_lagtime_c00064_4_design,trial_of_nutrients_lagtime_c00064_4_factor).
factor(trial_of_nutrients_lagtime_c00064_4_factor).
has_representation(trial_of_nutrients_lagtime_c00064_4_factor,'presence or absence of c00064').
has_input(trial_of_nutrients_lagtime_c00064_4,trial_of_nutrients_lagtime_c00064_4_data).
data(trial_of_nutrients_lagtime_c00064_4_data).
has_part(trial_of_nutrients_lagtime_c00064_4_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00064_4_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00064_4_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00064_4,'jan07-trial1_expt001-plate003').
plate('jan07-trial1_expt001-plate003').
has_proposition(trial_of_nutrients_lagtime_c00064_4,trial_of_nutrients_lagtime_c00064_4_result).
result(trial_of_nutrients_lagtime_c00064_4_result).
has_part(trial_of_nutrients_lagtime_c00064_4_result,trial_of_nutrients_lagtime_c00064_4_result_1).
has_representation(trial_of_nutrients_lagtime_c00064_4_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00064_4_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00064_4_result_1,trial_of_nutrients_lagtime_c00064_4_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00064_4_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00064_4_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00064_4_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00064_4_result,trial_of_nutrients_lagtime_c00064_4_result_2).
has_representation(trial_of_nutrients_lagtime_c00064_4_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00064_4_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00064_4_result_2,trial_of_nutrients_lagtime_c00064_4_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00064_4_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00064_4_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00064_4_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00064_5,trial_of_nutrients_lagtime_c00064_5_design).
design(trial_of_nutrients_lagtime_c00064_5_design).
has_proposition(trial_of_nutrients_lagtime_c00064_5_design,trial_of_nutrients_lagtime_c00064_5_factor).
factor(trial_of_nutrients_lagtime_c00064_5_factor).
has_representation(trial_of_nutrients_lagtime_c00064_5_factor,'presence or absence of c00064').
has_input(trial_of_nutrients_lagtime_c00064_5,trial_of_nutrients_lagtime_c00064_5_data).
data(trial_of_nutrients_lagtime_c00064_5_data).
has_part(trial_of_nutrients_lagtime_c00064_5_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00064_5_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00064_5_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00064_5,'jan07-trial1_expt001-plate008').
plate('jan07-trial1_expt001-plate008').
has_proposition(trial_of_nutrients_lagtime_c00064_5,trial_of_nutrients_lagtime_c00064_5_result).
result(trial_of_nutrients_lagtime_c00064_5_result).
has_part(trial_of_nutrients_lagtime_c00064_5_result,trial_of_nutrients_lagtime_c00064_5_result_1).
has_representation(trial_of_nutrients_lagtime_c00064_5_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00064_5_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00064_5_result_1,trial_of_nutrients_lagtime_c00064_5_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00064_5_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00064_5_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00064_5_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00064_5_result,trial_of_nutrients_lagtime_c00064_5_result_2).
has_representation(trial_of_nutrients_lagtime_c00064_5_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00064_5_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00064_5_result_2,trial_of_nutrients_lagtime_c00064_5_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00064_5_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00064_5_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00064_5_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00064_6,trial_of_nutrients_lagtime_c00064_6_design).
design(trial_of_nutrients_lagtime_c00064_6_design).
has_proposition(trial_of_nutrients_lagtime_c00064_6_design,trial_of_nutrients_lagtime_c00064_6_factor).
factor(trial_of_nutrients_lagtime_c00064_6_factor).
has_representation(trial_of_nutrients_lagtime_c00064_6_factor,'presence or absence of c00064').
has_input(trial_of_nutrients_lagtime_c00064_6,trial_of_nutrients_lagtime_c00064_6_data).
data(trial_of_nutrients_lagtime_c00064_6_data).
has_part(trial_of_nutrients_lagtime_c00064_6_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00064_6_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00064_6_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00064_6,'jan07-trial1_expt001-plate009').
plate('jan07-trial1_expt001-plate009').
has_proposition(trial_of_nutrients_lagtime_c00064_6,trial_of_nutrients_lagtime_c00064_6_result).
result(trial_of_nutrients_lagtime_c00064_6_result).
has_part(trial_of_nutrients_lagtime_c00064_6_result,trial_of_nutrients_lagtime_c00064_6_result_1).
has_representation(trial_of_nutrients_lagtime_c00064_6_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00064_6_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00064_6_result_1,trial_of_nutrients_lagtime_c00064_6_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00064_6_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00064_6_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00064_6_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00064_6_result,trial_of_nutrients_lagtime_c00064_6_result_2).
has_representation(trial_of_nutrients_lagtime_c00064_6_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00064_6_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00064_6_result_2,trial_of_nutrients_lagtime_c00064_6_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00064_6_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00064_6_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00064_6_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00064_7,trial_of_nutrients_lagtime_c00064_7_design).
design(trial_of_nutrients_lagtime_c00064_7_design).
has_proposition(trial_of_nutrients_lagtime_c00064_7_design,trial_of_nutrients_lagtime_c00064_7_factor).
factor(trial_of_nutrients_lagtime_c00064_7_factor).
has_representation(trial_of_nutrients_lagtime_c00064_7_factor,'presence or absence of c00064').
has_input(trial_of_nutrients_lagtime_c00064_7,trial_of_nutrients_lagtime_c00064_7_data).
data(trial_of_nutrients_lagtime_c00064_7_data).
has_part(trial_of_nutrients_lagtime_c00064_7_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00064_7_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00064_7_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00064_7,'jan07-trial1_expt001-plate010').
plate('jan07-trial1_expt001-plate010').
has_proposition(trial_of_nutrients_lagtime_c00064_7,trial_of_nutrients_lagtime_c00064_7_result).
result(trial_of_nutrients_lagtime_c00064_7_result).
has_part(trial_of_nutrients_lagtime_c00064_7_result,trial_of_nutrients_lagtime_c00064_7_result_1).
has_representation(trial_of_nutrients_lagtime_c00064_7_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00064_7_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00064_7_result_1,trial_of_nutrients_lagtime_c00064_7_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00064_7_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00064_7_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00064_7_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00064_7_result,trial_of_nutrients_lagtime_c00064_7_result_2).
has_representation(trial_of_nutrients_lagtime_c00064_7_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00064_7_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00064_7_result_2,trial_of_nutrients_lagtime_c00064_7_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00064_7_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00064_7_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00064_7_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00064_8,trial_of_nutrients_lagtime_c00064_8_design).
design(trial_of_nutrients_lagtime_c00064_8_design).
has_proposition(trial_of_nutrients_lagtime_c00064_8_design,trial_of_nutrients_lagtime_c00064_8_factor).
factor(trial_of_nutrients_lagtime_c00064_8_factor).
has_representation(trial_of_nutrients_lagtime_c00064_8_factor,'presence or absence of c00064').
has_input(trial_of_nutrients_lagtime_c00064_8,trial_of_nutrients_lagtime_c00064_8_data).
data(trial_of_nutrients_lagtime_c00064_8_data).
has_part(trial_of_nutrients_lagtime_c00064_8_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00064_8_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00064_8_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00064_8,'jan07-trial1_expt001-plate011').
plate('jan07-trial1_expt001-plate011').
has_proposition(trial_of_nutrients_lagtime_c00064_8,trial_of_nutrients_lagtime_c00064_8_result).
result(trial_of_nutrients_lagtime_c00064_8_result).
has_part(trial_of_nutrients_lagtime_c00064_8_result,trial_of_nutrients_lagtime_c00064_8_result_1).
has_representation(trial_of_nutrients_lagtime_c00064_8_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00064_8_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00064_8_result_1,trial_of_nutrients_lagtime_c00064_8_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00064_8_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00064_8_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00064_8_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00064_8_result,trial_of_nutrients_lagtime_c00064_8_result_2).
has_representation(trial_of_nutrients_lagtime_c00064_8_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00064_8_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00064_8_result_2,trial_of_nutrients_lagtime_c00064_8_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00064_8_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00064_8_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00064_8_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00064,trial_of_nutrients_lagtime_c00064_results).
result(trial_of_nutrients_lagtime_c00064_results).
has_part(trial_of_nutrients_lagtime_c00064_results,trial_of_nutrients_lagtime_c00064_results_1).
has_representation(trial_of_nutrients_lagtime_c00064_results_1,'median of wildtype medians in minimal').
text_representation('median of wildtype medians in minimal').
has_proposition(trial_of_nutrients_lagtime_c00064_results_1,trial_of_nutrients_lagtime_c00064_results_1_proc).
procedure(trial_of_nutrients_lagtime_c00064_results_1_proc).
has_proposition(trial_of_nutrients_lagtime_c00064_results_1_proc,'procedures/remove_dupl_medians_nut.R').
link('procedures/remove_dupl_medians_nut.R').
has_part(trial_of_nutrients_lagtime_c00064_results,trial_of_nutrients_lagtime_c00064_results_2).
has_representation(trial_of_nutrients_lagtime_c00064_results_2,'median of wildtype medians in minimal with metabolite').
text_representation('median of wildtype medians in minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00064_results_2,trial_of_nutrients_lagtime_c00064_results_2_proc).
procedure(trial_of_nutrients_lagtime_c00064_results_2_proc).
has_proposition(trial_of_nutrients_lagtime_c00064_results_2_proc,'procedures/remove_dupl_medians_nut.R').
link('procedures/remove_dupl_medians_nut.R').
has_part(trial_of_nutrients_lagtime_c00064_results,trial_of_nutrients_lagtime_c00064_results_3).
has_representation(trial_of_nutrients_lagtime_c00064_results_3,'difference between trial_of_nutrients_lagtime_c00064_results_1 and trial_of_nutrients_lagtime_c00064_results_2').
text_representation('difference between trial_of_nutrients_lagtime_c00064_results_1 and trial_of_nutrients_lagtime_c00064_results_2').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_result).
result(study_on_rich_growthrate_result).
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_1).
has_representation(study_on_rich_growthrate_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_rich_growthrate_result_1,'results/wr_kr_growth_rate.csv').
link('results/wr_kr_growth_rate.csv').
has_proposition(study_on_rich_growthrate_result_1,study_on_rich_growthrate_result_1_proc).
procedure(study_on_rich_growthrate_result_1_proc).
has_proposition(study_on_rich_growthrate_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_2).
has_representation(study_on_rich_growthrate_result_2,'bar graph (histogram) plotting study_on_rich_growthrate_result_1').
text_representation('bar graph (histogram) plotting study_on_rich_growthrate_result_1').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate1.tiff').
link('results/kr_wr_growth_rate1.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate2.tiff').
link('results/kr_wr_growth_rate2.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/overlayed_growth_rate.tiff').
link('results/overlayed_growth_rate.tiff').
has_proposition(study_on_rich_growthrate_result_2,study_on_rich_growthrate_result_2_proc).
procedure(study_on_rich_growthrate_result_2_proc).
has_proposition(study_on_rich_growthrate_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_conclusion).
conclusion(study_on_rich_growthrate_conclusion).
has_representation(study_on_rich_growthrate_conclusion,'The knockouts have higher growth rate in rich than the wild type').
text_representation('The knockouts have higher growth rate in rich than the wild type').
has_proposition(study_on_rich_growthrate_conclusion,'obtain statistical mode of study_on_rich_growthrate_result_1').
procedure('obtain statistical mode of study_on_rich_growthrate_result_1').
text_representation('obtain statistical mode of study_on_rich_growthrate_result_1').
has_part(study_of_nutrients_lagtime,trial_of_nutrients_lagtime_c00108).
trial(trial_of_nutrients_lagtime_c00108).
has_agent(trial_of_nutrients_lagtime_c00108,c00108).
metabolite(c00108).
has_proposition(trial_of_nutrients_lagtime_c00108_1,trial_of_nutrients_lagtime_c00108_1_design).
design(trial_of_nutrients_lagtime_c00108_1_design).
has_proposition(trial_of_nutrients_lagtime_c00108_1_design,trial_of_nutrients_lagtime_c00108_1_factor).
factor(trial_of_nutrients_lagtime_c00108_1_factor).
has_representation(trial_of_nutrients_lagtime_c00108_1_factor,'presence or absence of c00108').
has_input(trial_of_nutrients_lagtime_c00108_1,trial_of_nutrients_lagtime_c00108_1_data).
data(trial_of_nutrients_lagtime_c00108_1_data).
has_part(trial_of_nutrients_lagtime_c00108_1_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00108_1_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00108_1_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00108_1,'feb07-trial1_expt001-plate007').
plate('feb07-trial1_expt001-plate007').
has_proposition(trial_of_nutrients_lagtime_c00108_1,trial_of_nutrients_lagtime_c00108_1_result).
result(trial_of_nutrients_lagtime_c00108_1_result).
has_part(trial_of_nutrients_lagtime_c00108_1_result,trial_of_nutrients_lagtime_c00108_1_result_1).
has_representation(trial_of_nutrients_lagtime_c00108_1_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00108_1_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00108_1_result_1,trial_of_nutrients_lagtime_c00108_1_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00108_1_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00108_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00108_1_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00108_1_result,trial_of_nutrients_lagtime_c00108_1_result_2).
has_representation(trial_of_nutrients_lagtime_c00108_1_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00108_1_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00108_1_result_2,trial_of_nutrients_lagtime_c00108_1_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00108_1_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00108_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00108_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00108_2,trial_of_nutrients_lagtime_c00108_2_design).
design(trial_of_nutrients_lagtime_c00108_2_design).
has_proposition(trial_of_nutrients_lagtime_c00108_2_design,trial_of_nutrients_lagtime_c00108_2_factor).
factor(trial_of_nutrients_lagtime_c00108_2_factor).
has_representation(trial_of_nutrients_lagtime_c00108_2_factor,'presence or absence of c00108').
has_input(trial_of_nutrients_lagtime_c00108_2,trial_of_nutrients_lagtime_c00108_2_data).
data(trial_of_nutrients_lagtime_c00108_2_data).
has_part(trial_of_nutrients_lagtime_c00108_2_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00108_2_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00108_2_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00108_2,'feb07-trial1_expt001-plate009').
plate('feb07-trial1_expt001-plate009').
has_proposition(trial_of_nutrients_lagtime_c00108_2,trial_of_nutrients_lagtime_c00108_2_result).
result(trial_of_nutrients_lagtime_c00108_2_result).
has_part(trial_of_nutrients_lagtime_c00108_2_result,trial_of_nutrients_lagtime_c00108_2_result_1).
has_representation(trial_of_nutrients_lagtime_c00108_2_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00108_2_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00108_2_result_1,trial_of_nutrients_lagtime_c00108_2_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00108_2_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00108_2_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00108_2_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00108_2_result,trial_of_nutrients_lagtime_c00108_2_result_2).
has_representation(trial_of_nutrients_lagtime_c00108_2_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00108_2_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00108_2_result_2,trial_of_nutrients_lagtime_c00108_2_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00108_2_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00108_2_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00108_2_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00108_3,trial_of_nutrients_lagtime_c00108_3_design).
design(trial_of_nutrients_lagtime_c00108_3_design).
has_proposition(trial_of_nutrients_lagtime_c00108_3_design,trial_of_nutrients_lagtime_c00108_3_factor).
factor(trial_of_nutrients_lagtime_c00108_3_factor).
has_representation(trial_of_nutrients_lagtime_c00108_3_factor,'presence or absence of c00108').
has_input(trial_of_nutrients_lagtime_c00108_3,trial_of_nutrients_lagtime_c00108_3_data).
data(trial_of_nutrients_lagtime_c00108_3_data).
has_part(trial_of_nutrients_lagtime_c00108_3_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00108_3_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00108_3_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00108_3,'jan07-trial2_expt001-plate001').
plate('jan07-trial2_expt001-plate001').
has_proposition(trial_of_nutrients_lagtime_c00108_3,trial_of_nutrients_lagtime_c00108_3_result).
result(trial_of_nutrients_lagtime_c00108_3_result).
has_part(trial_of_nutrients_lagtime_c00108_3_result,trial_of_nutrients_lagtime_c00108_3_result_1).
has_representation(trial_of_nutrients_lagtime_c00108_3_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00108_3_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00108_3_result_1,trial_of_nutrients_lagtime_c00108_3_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00108_3_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00108_3_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00108_3_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00108_3_result,trial_of_nutrients_lagtime_c00108_3_result_2).
has_representation(trial_of_nutrients_lagtime_c00108_3_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00108_3_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00108_3_result_2,trial_of_nutrients_lagtime_c00108_3_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00108_3_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00108_3_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00108_3_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00108_4,trial_of_nutrients_lagtime_c00108_4_design).
design(trial_of_nutrients_lagtime_c00108_4_design).
has_proposition(trial_of_nutrients_lagtime_c00108_4_design,trial_of_nutrients_lagtime_c00108_4_factor).
factor(trial_of_nutrients_lagtime_c00108_4_factor).
has_representation(trial_of_nutrients_lagtime_c00108_4_factor,'presence or absence of c00108').
has_input(trial_of_nutrients_lagtime_c00108_4,trial_of_nutrients_lagtime_c00108_4_data).
data(trial_of_nutrients_lagtime_c00108_4_data).
has_part(trial_of_nutrients_lagtime_c00108_4_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00108_4_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00108_4_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00108_4,'nature-loop3_expt001-plate001').
plate('nature-loop3_expt001-plate001').
has_proposition(trial_of_nutrients_lagtime_c00108_4,trial_of_nutrients_lagtime_c00108_4_result).
result(trial_of_nutrients_lagtime_c00108_4_result).
has_part(trial_of_nutrients_lagtime_c00108_4_result,trial_of_nutrients_lagtime_c00108_4_result_1).
has_representation(trial_of_nutrients_lagtime_c00108_4_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00108_4_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00108_4_result_1,trial_of_nutrients_lagtime_c00108_4_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00108_4_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00108_4_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00108_4_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00108_4_result,trial_of_nutrients_lagtime_c00108_4_result_2).
has_representation(trial_of_nutrients_lagtime_c00108_4_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00108_4_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00108_4_result_2,trial_of_nutrients_lagtime_c00108_4_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00108_4_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00108_4_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00108_4_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00108_5,trial_of_nutrients_lagtime_c00108_5_design).
design(trial_of_nutrients_lagtime_c00108_5_design).
has_proposition(trial_of_nutrients_lagtime_c00108_5_design,trial_of_nutrients_lagtime_c00108_5_factor).
factor(trial_of_nutrients_lagtime_c00108_5_factor).
has_representation(trial_of_nutrients_lagtime_c00108_5_factor,'presence or absence of c00108').
has_input(trial_of_nutrients_lagtime_c00108_5,trial_of_nutrients_lagtime_c00108_5_data).
data(trial_of_nutrients_lagtime_c00108_5_data).
has_part(trial_of_nutrients_lagtime_c00108_5_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00108_5_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00108_5_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00108_5,'nature-loop3_expt001-plate002').
plate('nature-loop3_expt001-plate002').
has_proposition(trial_of_nutrients_lagtime_c00108_5,trial_of_nutrients_lagtime_c00108_5_result).
result(trial_of_nutrients_lagtime_c00108_5_result).
has_part(trial_of_nutrients_lagtime_c00108_5_result,trial_of_nutrients_lagtime_c00108_5_result_1).
has_representation(trial_of_nutrients_lagtime_c00108_5_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00108_5_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00108_5_result_1,trial_of_nutrients_lagtime_c00108_5_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00108_5_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00108_5_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00108_5_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00108_5_result,trial_of_nutrients_lagtime_c00108_5_result_2).
has_representation(trial_of_nutrients_lagtime_c00108_5_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00108_5_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00108_5_result_2,trial_of_nutrients_lagtime_c00108_5_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00108_5_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00108_5_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00108_5_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00108_6,trial_of_nutrients_lagtime_c00108_6_design).
design(trial_of_nutrients_lagtime_c00108_6_design).
has_proposition(trial_of_nutrients_lagtime_c00108_6_design,trial_of_nutrients_lagtime_c00108_6_factor).
factor(trial_of_nutrients_lagtime_c00108_6_factor).
has_representation(trial_of_nutrients_lagtime_c00108_6_factor,'presence or absence of c00108').
has_input(trial_of_nutrients_lagtime_c00108_6,trial_of_nutrients_lagtime_c00108_6_data).
data(trial_of_nutrients_lagtime_c00108_6_data).
has_part(trial_of_nutrients_lagtime_c00108_6_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00108_6_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00108_6_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00108_6,'nature-loop3_expt001-plate003').
plate('nature-loop3_expt001-plate003').
has_proposition(trial_of_nutrients_lagtime_c00108_6,trial_of_nutrients_lagtime_c00108_6_result).
result(trial_of_nutrients_lagtime_c00108_6_result).
has_part(trial_of_nutrients_lagtime_c00108_6_result,trial_of_nutrients_lagtime_c00108_6_result_1).
has_representation(trial_of_nutrients_lagtime_c00108_6_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00108_6_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00108_6_result_1,trial_of_nutrients_lagtime_c00108_6_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00108_6_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00108_6_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00108_6_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00108_6_result,trial_of_nutrients_lagtime_c00108_6_result_2).
has_representation(trial_of_nutrients_lagtime_c00108_6_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00108_6_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00108_6_result_2,trial_of_nutrients_lagtime_c00108_6_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00108_6_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00108_6_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00108_6_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00108_7,trial_of_nutrients_lagtime_c00108_7_design).
design(trial_of_nutrients_lagtime_c00108_7_design).
has_proposition(trial_of_nutrients_lagtime_c00108_7_design,trial_of_nutrients_lagtime_c00108_7_factor).
factor(trial_of_nutrients_lagtime_c00108_7_factor).
has_representation(trial_of_nutrients_lagtime_c00108_7_factor,'presence or absence of c00108').
has_input(trial_of_nutrients_lagtime_c00108_7,trial_of_nutrients_lagtime_c00108_7_data).
data(trial_of_nutrients_lagtime_c00108_7_data).
has_part(trial_of_nutrients_lagtime_c00108_7_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00108_7_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00108_7_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00108_7,'nature-loop3_expt001-plate004').
plate('nature-loop3_expt001-plate004').
has_proposition(trial_of_nutrients_lagtime_c00108_7,trial_of_nutrients_lagtime_c00108_7_result).
result(trial_of_nutrients_lagtime_c00108_7_result).
has_part(trial_of_nutrients_lagtime_c00108_7_result,trial_of_nutrients_lagtime_c00108_7_result_1).
has_representation(trial_of_nutrients_lagtime_c00108_7_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00108_7_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00108_7_result_1,trial_of_nutrients_lagtime_c00108_7_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00108_7_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00108_7_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00108_7_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00108_7_result,trial_of_nutrients_lagtime_c00108_7_result_2).
has_representation(trial_of_nutrients_lagtime_c00108_7_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00108_7_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00108_7_result_2,trial_of_nutrients_lagtime_c00108_7_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00108_7_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00108_7_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00108_7_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00108_8,trial_of_nutrients_lagtime_c00108_8_design).
design(trial_of_nutrients_lagtime_c00108_8_design).
has_proposition(trial_of_nutrients_lagtime_c00108_8_design,trial_of_nutrients_lagtime_c00108_8_factor).
factor(trial_of_nutrients_lagtime_c00108_8_factor).
has_representation(trial_of_nutrients_lagtime_c00108_8_factor,'presence or absence of c00108').
has_input(trial_of_nutrients_lagtime_c00108_8,trial_of_nutrients_lagtime_c00108_8_data).
data(trial_of_nutrients_lagtime_c00108_8_data).
has_part(trial_of_nutrients_lagtime_c00108_8_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00108_8_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00108_8_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00108_8,'nature-loop3_expt001-plate005').
plate('nature-loop3_expt001-plate005').
has_proposition(trial_of_nutrients_lagtime_c00108_8,trial_of_nutrients_lagtime_c00108_8_result).
result(trial_of_nutrients_lagtime_c00108_8_result).
has_part(trial_of_nutrients_lagtime_c00108_8_result,trial_of_nutrients_lagtime_c00108_8_result_1).
has_representation(trial_of_nutrients_lagtime_c00108_8_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00108_8_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00108_8_result_1,trial_of_nutrients_lagtime_c00108_8_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00108_8_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00108_8_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00108_8_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00108_8_result,trial_of_nutrients_lagtime_c00108_8_result_2).
has_representation(trial_of_nutrients_lagtime_c00108_8_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00108_8_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00108_8_result_2,trial_of_nutrients_lagtime_c00108_8_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00108_8_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00108_8_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00108_8_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00108_9,trial_of_nutrients_lagtime_c00108_9_design).
design(trial_of_nutrients_lagtime_c00108_9_design).
has_proposition(trial_of_nutrients_lagtime_c00108_9_design,trial_of_nutrients_lagtime_c00108_9_factor).
factor(trial_of_nutrients_lagtime_c00108_9_factor).
has_representation(trial_of_nutrients_lagtime_c00108_9_factor,'presence or absence of c00108').
has_input(trial_of_nutrients_lagtime_c00108_9,trial_of_nutrients_lagtime_c00108_9_data).
data(trial_of_nutrients_lagtime_c00108_9_data).
has_part(trial_of_nutrients_lagtime_c00108_9_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00108_9_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00108_9_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00108_9,'nature-loop3_expt001-plate006').
plate('nature-loop3_expt001-plate006').
has_proposition(trial_of_nutrients_lagtime_c00108_9,trial_of_nutrients_lagtime_c00108_9_result).
result(trial_of_nutrients_lagtime_c00108_9_result).
has_part(trial_of_nutrients_lagtime_c00108_9_result,trial_of_nutrients_lagtime_c00108_9_result_1).
has_representation(trial_of_nutrients_lagtime_c00108_9_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00108_9_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00108_9_result_1,trial_of_nutrients_lagtime_c00108_9_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00108_9_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00108_9_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00108_9_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00108_9_result,trial_of_nutrients_lagtime_c00108_9_result_2).
has_representation(trial_of_nutrients_lagtime_c00108_9_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00108_9_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00108_9_result_2,trial_of_nutrients_lagtime_c00108_9_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00108_9_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00108_9_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00108_9_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00108_10,trial_of_nutrients_lagtime_c00108_10_design).
design(trial_of_nutrients_lagtime_c00108_10_design).
has_proposition(trial_of_nutrients_lagtime_c00108_10_design,trial_of_nutrients_lagtime_c00108_10_factor).
factor(trial_of_nutrients_lagtime_c00108_10_factor).
has_representation(trial_of_nutrients_lagtime_c00108_10_factor,'presence or absence of c00108').
has_input(trial_of_nutrients_lagtime_c00108_10,trial_of_nutrients_lagtime_c00108_10_data).
data(trial_of_nutrients_lagtime_c00108_10_data).
has_part(trial_of_nutrients_lagtime_c00108_10_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00108_10_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00108_10_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00108_10,'nature-loop3_expt001-plate007').
plate('nature-loop3_expt001-plate007').
has_proposition(trial_of_nutrients_lagtime_c00108_10,trial_of_nutrients_lagtime_c00108_10_result).
result(trial_of_nutrients_lagtime_c00108_10_result).
has_part(trial_of_nutrients_lagtime_c00108_10_result,trial_of_nutrients_lagtime_c00108_10_result_1).
has_representation(trial_of_nutrients_lagtime_c00108_10_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00108_10_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00108_10_result_1,trial_of_nutrients_lagtime_c00108_10_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00108_10_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00108_10_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00108_10_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00108_10_result,trial_of_nutrients_lagtime_c00108_10_result_2).
has_representation(trial_of_nutrients_lagtime_c00108_10_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00108_10_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00108_10_result_2,trial_of_nutrients_lagtime_c00108_10_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00108_10_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00108_10_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00108_10_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00108_11,trial_of_nutrients_lagtime_c00108_11_design).
design(trial_of_nutrients_lagtime_c00108_11_design).
has_proposition(trial_of_nutrients_lagtime_c00108_11_design,trial_of_nutrients_lagtime_c00108_11_factor).
factor(trial_of_nutrients_lagtime_c00108_11_factor).
has_representation(trial_of_nutrients_lagtime_c00108_11_factor,'presence or absence of c00108').
has_input(trial_of_nutrients_lagtime_c00108_11,trial_of_nutrients_lagtime_c00108_11_data).
data(trial_of_nutrients_lagtime_c00108_11_data).
has_part(trial_of_nutrients_lagtime_c00108_11_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00108_11_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00108_11_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00108_11,'nature-loop3_expt001-plate008').
plate('nature-loop3_expt001-plate008').
has_proposition(trial_of_nutrients_lagtime_c00108_11,trial_of_nutrients_lagtime_c00108_11_result).
result(trial_of_nutrients_lagtime_c00108_11_result).
has_part(trial_of_nutrients_lagtime_c00108_11_result,trial_of_nutrients_lagtime_c00108_11_result_1).
has_representation(trial_of_nutrients_lagtime_c00108_11_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00108_11_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00108_11_result_1,trial_of_nutrients_lagtime_c00108_11_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00108_11_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00108_11_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00108_11_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00108_11_result,trial_of_nutrients_lagtime_c00108_11_result_2).
has_representation(trial_of_nutrients_lagtime_c00108_11_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00108_11_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00108_11_result_2,trial_of_nutrients_lagtime_c00108_11_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00108_11_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00108_11_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00108_11_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00108_12,trial_of_nutrients_lagtime_c00108_12_design).
design(trial_of_nutrients_lagtime_c00108_12_design).
has_proposition(trial_of_nutrients_lagtime_c00108_12_design,trial_of_nutrients_lagtime_c00108_12_factor).
factor(trial_of_nutrients_lagtime_c00108_12_factor).
has_representation(trial_of_nutrients_lagtime_c00108_12_factor,'presence or absence of c00108').
has_input(trial_of_nutrients_lagtime_c00108_12,trial_of_nutrients_lagtime_c00108_12_data).
data(trial_of_nutrients_lagtime_c00108_12_data).
has_part(trial_of_nutrients_lagtime_c00108_12_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00108_12_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00108_12_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00108_12,'nature-loop3_expt003-plate006').
plate('nature-loop3_expt003-plate006').
has_proposition(trial_of_nutrients_lagtime_c00108_12,trial_of_nutrients_lagtime_c00108_12_result).
result(trial_of_nutrients_lagtime_c00108_12_result).
has_part(trial_of_nutrients_lagtime_c00108_12_result,trial_of_nutrients_lagtime_c00108_12_result_1).
has_representation(trial_of_nutrients_lagtime_c00108_12_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00108_12_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00108_12_result_1,trial_of_nutrients_lagtime_c00108_12_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00108_12_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00108_12_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00108_12_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00108_12_result,trial_of_nutrients_lagtime_c00108_12_result_2).
has_representation(trial_of_nutrients_lagtime_c00108_12_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00108_12_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00108_12_result_2,trial_of_nutrients_lagtime_c00108_12_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00108_12_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00108_12_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00108_12_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00108_13,trial_of_nutrients_lagtime_c00108_13_design).
design(trial_of_nutrients_lagtime_c00108_13_design).
has_proposition(trial_of_nutrients_lagtime_c00108_13_design,trial_of_nutrients_lagtime_c00108_13_factor).
factor(trial_of_nutrients_lagtime_c00108_13_factor).
has_representation(trial_of_nutrients_lagtime_c00108_13_factor,'presence or absence of c00108').
has_input(trial_of_nutrients_lagtime_c00108_13,trial_of_nutrients_lagtime_c00108_13_data).
data(trial_of_nutrients_lagtime_c00108_13_data).
has_part(trial_of_nutrients_lagtime_c00108_13_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00108_13_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00108_13_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00108_13,'nature-loop3_expt005-plate002').
plate('nature-loop3_expt005-plate002').
has_proposition(trial_of_nutrients_lagtime_c00108_13,trial_of_nutrients_lagtime_c00108_13_result).
result(trial_of_nutrients_lagtime_c00108_13_result).
has_part(trial_of_nutrients_lagtime_c00108_13_result,trial_of_nutrients_lagtime_c00108_13_result_1).
has_representation(trial_of_nutrients_lagtime_c00108_13_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00108_13_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00108_13_result_1,trial_of_nutrients_lagtime_c00108_13_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00108_13_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00108_13_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00108_13_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00108_13_result,trial_of_nutrients_lagtime_c00108_13_result_2).
has_representation(trial_of_nutrients_lagtime_c00108_13_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00108_13_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00108_13_result_2,trial_of_nutrients_lagtime_c00108_13_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00108_13_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00108_13_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00108_13_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00108_14,trial_of_nutrients_lagtime_c00108_14_design).
design(trial_of_nutrients_lagtime_c00108_14_design).
has_proposition(trial_of_nutrients_lagtime_c00108_14_design,trial_of_nutrients_lagtime_c00108_14_factor).
factor(trial_of_nutrients_lagtime_c00108_14_factor).
has_representation(trial_of_nutrients_lagtime_c00108_14_factor,'presence or absence of c00108').
has_input(trial_of_nutrients_lagtime_c00108_14,trial_of_nutrients_lagtime_c00108_14_data).
data(trial_of_nutrients_lagtime_c00108_14_data).
has_part(trial_of_nutrients_lagtime_c00108_14_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00108_14_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00108_14_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00108_14,'nature-loop3_expt005-plate004').
plate('nature-loop3_expt005-plate004').
has_proposition(trial_of_nutrients_lagtime_c00108_14,trial_of_nutrients_lagtime_c00108_14_result).
result(trial_of_nutrients_lagtime_c00108_14_result).
has_part(trial_of_nutrients_lagtime_c00108_14_result,trial_of_nutrients_lagtime_c00108_14_result_1).
has_representation(trial_of_nutrients_lagtime_c00108_14_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00108_14_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00108_14_result_1,trial_of_nutrients_lagtime_c00108_14_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00108_14_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00108_14_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00108_14_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00108_14_result,trial_of_nutrients_lagtime_c00108_14_result_2).
has_representation(trial_of_nutrients_lagtime_c00108_14_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00108_14_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00108_14_result_2,trial_of_nutrients_lagtime_c00108_14_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00108_14_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00108_14_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00108_14_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00108_15,trial_of_nutrients_lagtime_c00108_15_design).
design(trial_of_nutrients_lagtime_c00108_15_design).
has_proposition(trial_of_nutrients_lagtime_c00108_15_design,trial_of_nutrients_lagtime_c00108_15_factor).
factor(trial_of_nutrients_lagtime_c00108_15_factor).
has_representation(trial_of_nutrients_lagtime_c00108_15_factor,'presence or absence of c00108').
has_input(trial_of_nutrients_lagtime_c00108_15,trial_of_nutrients_lagtime_c00108_15_data).
data(trial_of_nutrients_lagtime_c00108_15_data).
has_part(trial_of_nutrients_lagtime_c00108_15_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00108_15_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00108_15_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00108_15,'nature-loop3_expt005-plate005').
plate('nature-loop3_expt005-plate005').
has_proposition(trial_of_nutrients_lagtime_c00108_15,trial_of_nutrients_lagtime_c00108_15_result).
result(trial_of_nutrients_lagtime_c00108_15_result).
has_part(trial_of_nutrients_lagtime_c00108_15_result,trial_of_nutrients_lagtime_c00108_15_result_1).
has_representation(trial_of_nutrients_lagtime_c00108_15_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00108_15_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00108_15_result_1,trial_of_nutrients_lagtime_c00108_15_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00108_15_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00108_15_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00108_15_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00108_15_result,trial_of_nutrients_lagtime_c00108_15_result_2).
has_representation(trial_of_nutrients_lagtime_c00108_15_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00108_15_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00108_15_result_2,trial_of_nutrients_lagtime_c00108_15_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00108_15_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00108_15_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00108_15_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00108_16,trial_of_nutrients_lagtime_c00108_16_design).
design(trial_of_nutrients_lagtime_c00108_16_design).
has_proposition(trial_of_nutrients_lagtime_c00108_16_design,trial_of_nutrients_lagtime_c00108_16_factor).
factor(trial_of_nutrients_lagtime_c00108_16_factor).
has_representation(trial_of_nutrients_lagtime_c00108_16_factor,'presence or absence of c00108').
has_input(trial_of_nutrients_lagtime_c00108_16,trial_of_nutrients_lagtime_c00108_16_data).
data(trial_of_nutrients_lagtime_c00108_16_data).
has_part(trial_of_nutrients_lagtime_c00108_16_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00108_16_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00108_16_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00108_16,'nature-loop3_expt005-plate006').
plate('nature-loop3_expt005-plate006').
has_proposition(trial_of_nutrients_lagtime_c00108_16,trial_of_nutrients_lagtime_c00108_16_result).
result(trial_of_nutrients_lagtime_c00108_16_result).
has_part(trial_of_nutrients_lagtime_c00108_16_result,trial_of_nutrients_lagtime_c00108_16_result_1).
has_representation(trial_of_nutrients_lagtime_c00108_16_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00108_16_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00108_16_result_1,trial_of_nutrients_lagtime_c00108_16_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00108_16_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00108_16_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00108_16_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00108_16_result,trial_of_nutrients_lagtime_c00108_16_result_2).
has_representation(trial_of_nutrients_lagtime_c00108_16_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00108_16_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00108_16_result_2,trial_of_nutrients_lagtime_c00108_16_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00108_16_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00108_16_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00108_16_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00108_17,trial_of_nutrients_lagtime_c00108_17_design).
design(trial_of_nutrients_lagtime_c00108_17_design).
has_proposition(trial_of_nutrients_lagtime_c00108_17_design,trial_of_nutrients_lagtime_c00108_17_factor).
factor(trial_of_nutrients_lagtime_c00108_17_factor).
has_representation(trial_of_nutrients_lagtime_c00108_17_factor,'presence or absence of c00108').
has_input(trial_of_nutrients_lagtime_c00108_17,trial_of_nutrients_lagtime_c00108_17_data).
data(trial_of_nutrients_lagtime_c00108_17_data).
has_part(trial_of_nutrients_lagtime_c00108_17_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00108_17_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00108_17_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00108_17,'nature-loop3_expt005-plate007').
plate('nature-loop3_expt005-plate007').
has_proposition(trial_of_nutrients_lagtime_c00108_17,trial_of_nutrients_lagtime_c00108_17_result).
result(trial_of_nutrients_lagtime_c00108_17_result).
has_part(trial_of_nutrients_lagtime_c00108_17_result,trial_of_nutrients_lagtime_c00108_17_result_1).
has_representation(trial_of_nutrients_lagtime_c00108_17_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00108_17_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00108_17_result_1,trial_of_nutrients_lagtime_c00108_17_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00108_17_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00108_17_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00108_17_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00108_17_result,trial_of_nutrients_lagtime_c00108_17_result_2).
has_representation(trial_of_nutrients_lagtime_c00108_17_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00108_17_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00108_17_result_2,trial_of_nutrients_lagtime_c00108_17_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00108_17_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00108_17_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00108_17_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00108_18,trial_of_nutrients_lagtime_c00108_18_design).
design(trial_of_nutrients_lagtime_c00108_18_design).
has_proposition(trial_of_nutrients_lagtime_c00108_18_design,trial_of_nutrients_lagtime_c00108_18_factor).
factor(trial_of_nutrients_lagtime_c00108_18_factor).
has_representation(trial_of_nutrients_lagtime_c00108_18_factor,'presence or absence of c00108').
has_input(trial_of_nutrients_lagtime_c00108_18,trial_of_nutrients_lagtime_c00108_18_data).
data(trial_of_nutrients_lagtime_c00108_18_data).
has_part(trial_of_nutrients_lagtime_c00108_18_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00108_18_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00108_18_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00108_18,'nature-loop1_expt001-plate001').
plate('nature-loop1_expt001-plate001').
has_proposition(trial_of_nutrients_lagtime_c00108_18,trial_of_nutrients_lagtime_c00108_18_result).
result(trial_of_nutrients_lagtime_c00108_18_result).
has_part(trial_of_nutrients_lagtime_c00108_18_result,trial_of_nutrients_lagtime_c00108_18_result_1).
has_representation(trial_of_nutrients_lagtime_c00108_18_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00108_18_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00108_18_result_1,trial_of_nutrients_lagtime_c00108_18_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00108_18_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00108_18_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00108_18_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00108_18_result,trial_of_nutrients_lagtime_c00108_18_result_2).
has_representation(trial_of_nutrients_lagtime_c00108_18_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00108_18_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00108_18_result_2,trial_of_nutrients_lagtime_c00108_18_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00108_18_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00108_18_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00108_18_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00108_19,trial_of_nutrients_lagtime_c00108_19_design).
design(trial_of_nutrients_lagtime_c00108_19_design).
has_proposition(trial_of_nutrients_lagtime_c00108_19_design,trial_of_nutrients_lagtime_c00108_19_factor).
factor(trial_of_nutrients_lagtime_c00108_19_factor).
has_representation(trial_of_nutrients_lagtime_c00108_19_factor,'presence or absence of c00108').
has_input(trial_of_nutrients_lagtime_c00108_19,trial_of_nutrients_lagtime_c00108_19_data).
data(trial_of_nutrients_lagtime_c00108_19_data).
has_part(trial_of_nutrients_lagtime_c00108_19_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00108_19_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00108_19_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00108_19,'nature-loop1_expt001-plate002').
plate('nature-loop1_expt001-plate002').
has_proposition(trial_of_nutrients_lagtime_c00108_19,trial_of_nutrients_lagtime_c00108_19_result).
result(trial_of_nutrients_lagtime_c00108_19_result).
has_part(trial_of_nutrients_lagtime_c00108_19_result,trial_of_nutrients_lagtime_c00108_19_result_1).
has_representation(trial_of_nutrients_lagtime_c00108_19_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00108_19_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00108_19_result_1,trial_of_nutrients_lagtime_c00108_19_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00108_19_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00108_19_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00108_19_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00108_19_result,trial_of_nutrients_lagtime_c00108_19_result_2).
has_representation(trial_of_nutrients_lagtime_c00108_19_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00108_19_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00108_19_result_2,trial_of_nutrients_lagtime_c00108_19_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00108_19_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00108_19_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00108_19_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00108_20,trial_of_nutrients_lagtime_c00108_20_design).
design(trial_of_nutrients_lagtime_c00108_20_design).
has_proposition(trial_of_nutrients_lagtime_c00108_20_design,trial_of_nutrients_lagtime_c00108_20_factor).
factor(trial_of_nutrients_lagtime_c00108_20_factor).
has_representation(trial_of_nutrients_lagtime_c00108_20_factor,'presence or absence of c00108').
has_input(trial_of_nutrients_lagtime_c00108_20,trial_of_nutrients_lagtime_c00108_20_data).
data(trial_of_nutrients_lagtime_c00108_20_data).
has_part(trial_of_nutrients_lagtime_c00108_20_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00108_20_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00108_20_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00108_20,'nature-loop1_expt001-plate003').
plate('nature-loop1_expt001-plate003').
has_proposition(trial_of_nutrients_lagtime_c00108_20,trial_of_nutrients_lagtime_c00108_20_result).
result(trial_of_nutrients_lagtime_c00108_20_result).
has_part(trial_of_nutrients_lagtime_c00108_20_result,trial_of_nutrients_lagtime_c00108_20_result_1).
has_representation(trial_of_nutrients_lagtime_c00108_20_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00108_20_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00108_20_result_1,trial_of_nutrients_lagtime_c00108_20_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00108_20_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00108_20_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00108_20_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00108_20_result,trial_of_nutrients_lagtime_c00108_20_result_2).
has_representation(trial_of_nutrients_lagtime_c00108_20_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00108_20_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00108_20_result_2,trial_of_nutrients_lagtime_c00108_20_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00108_20_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00108_20_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00108_20_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00108_21,trial_of_nutrients_lagtime_c00108_21_design).
design(trial_of_nutrients_lagtime_c00108_21_design).
has_proposition(trial_of_nutrients_lagtime_c00108_21_design,trial_of_nutrients_lagtime_c00108_21_factor).
factor(trial_of_nutrients_lagtime_c00108_21_factor).
has_representation(trial_of_nutrients_lagtime_c00108_21_factor,'presence or absence of c00108').
has_input(trial_of_nutrients_lagtime_c00108_21,trial_of_nutrients_lagtime_c00108_21_data).
data(trial_of_nutrients_lagtime_c00108_21_data).
has_part(trial_of_nutrients_lagtime_c00108_21_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00108_21_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00108_21_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00108_21,'nature-loop1_expt001-plate004').
plate('nature-loop1_expt001-plate004').
has_proposition(trial_of_nutrients_lagtime_c00108_21,trial_of_nutrients_lagtime_c00108_21_result).
result(trial_of_nutrients_lagtime_c00108_21_result).
has_part(trial_of_nutrients_lagtime_c00108_21_result,trial_of_nutrients_lagtime_c00108_21_result_1).
has_representation(trial_of_nutrients_lagtime_c00108_21_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00108_21_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00108_21_result_1,trial_of_nutrients_lagtime_c00108_21_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00108_21_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00108_21_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00108_21_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00108_21_result,trial_of_nutrients_lagtime_c00108_21_result_2).
has_representation(trial_of_nutrients_lagtime_c00108_21_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00108_21_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00108_21_result_2,trial_of_nutrients_lagtime_c00108_21_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00108_21_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00108_21_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00108_21_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00108_22,trial_of_nutrients_lagtime_c00108_22_design).
design(trial_of_nutrients_lagtime_c00108_22_design).
has_proposition(trial_of_nutrients_lagtime_c00108_22_design,trial_of_nutrients_lagtime_c00108_22_factor).
factor(trial_of_nutrients_lagtime_c00108_22_factor).
has_representation(trial_of_nutrients_lagtime_c00108_22_factor,'presence or absence of c00108').
has_input(trial_of_nutrients_lagtime_c00108_22,trial_of_nutrients_lagtime_c00108_22_data).
data(trial_of_nutrients_lagtime_c00108_22_data).
has_part(trial_of_nutrients_lagtime_c00108_22_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00108_22_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00108_22_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00108_22,'nature-loop1_expt001-plate005').
plate('nature-loop1_expt001-plate005').
has_proposition(trial_of_nutrients_lagtime_c00108_22,trial_of_nutrients_lagtime_c00108_22_result).
result(trial_of_nutrients_lagtime_c00108_22_result).
has_part(trial_of_nutrients_lagtime_c00108_22_result,trial_of_nutrients_lagtime_c00108_22_result_1).
has_representation(trial_of_nutrients_lagtime_c00108_22_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00108_22_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00108_22_result_1,trial_of_nutrients_lagtime_c00108_22_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00108_22_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00108_22_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00108_22_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00108_22_result,trial_of_nutrients_lagtime_c00108_22_result_2).
has_representation(trial_of_nutrients_lagtime_c00108_22_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00108_22_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00108_22_result_2,trial_of_nutrients_lagtime_c00108_22_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00108_22_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00108_22_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00108_22_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00108_23,trial_of_nutrients_lagtime_c00108_23_design).
design(trial_of_nutrients_lagtime_c00108_23_design).
has_proposition(trial_of_nutrients_lagtime_c00108_23_design,trial_of_nutrients_lagtime_c00108_23_factor).
factor(trial_of_nutrients_lagtime_c00108_23_factor).
has_representation(trial_of_nutrients_lagtime_c00108_23_factor,'presence or absence of c00108').
has_input(trial_of_nutrients_lagtime_c00108_23,trial_of_nutrients_lagtime_c00108_23_data).
data(trial_of_nutrients_lagtime_c00108_23_data).
has_part(trial_of_nutrients_lagtime_c00108_23_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00108_23_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00108_23_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00108_23,'nature-loop1_expt001-plate006').
plate('nature-loop1_expt001-plate006').
has_proposition(trial_of_nutrients_lagtime_c00108_23,trial_of_nutrients_lagtime_c00108_23_result).
result(trial_of_nutrients_lagtime_c00108_23_result).
has_part(trial_of_nutrients_lagtime_c00108_23_result,trial_of_nutrients_lagtime_c00108_23_result_1).
has_representation(trial_of_nutrients_lagtime_c00108_23_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00108_23_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00108_23_result_1,trial_of_nutrients_lagtime_c00108_23_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00108_23_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00108_23_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00108_23_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00108_23_result,trial_of_nutrients_lagtime_c00108_23_result_2).
has_representation(trial_of_nutrients_lagtime_c00108_23_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00108_23_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00108_23_result_2,trial_of_nutrients_lagtime_c00108_23_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00108_23_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00108_23_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00108_23_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00108_24,trial_of_nutrients_lagtime_c00108_24_design).
design(trial_of_nutrients_lagtime_c00108_24_design).
has_proposition(trial_of_nutrients_lagtime_c00108_24_design,trial_of_nutrients_lagtime_c00108_24_factor).
factor(trial_of_nutrients_lagtime_c00108_24_factor).
has_representation(trial_of_nutrients_lagtime_c00108_24_factor,'presence or absence of c00108').
has_input(trial_of_nutrients_lagtime_c00108_24,trial_of_nutrients_lagtime_c00108_24_data).
data(trial_of_nutrients_lagtime_c00108_24_data).
has_part(trial_of_nutrients_lagtime_c00108_24_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00108_24_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00108_24_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00108_24,'nature-loop1_expt001-plate007').
plate('nature-loop1_expt001-plate007').
has_proposition(trial_of_nutrients_lagtime_c00108_24,trial_of_nutrients_lagtime_c00108_24_result).
result(trial_of_nutrients_lagtime_c00108_24_result).
has_part(trial_of_nutrients_lagtime_c00108_24_result,trial_of_nutrients_lagtime_c00108_24_result_1).
has_representation(trial_of_nutrients_lagtime_c00108_24_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00108_24_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00108_24_result_1,trial_of_nutrients_lagtime_c00108_24_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00108_24_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00108_24_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00108_24_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00108_24_result,trial_of_nutrients_lagtime_c00108_24_result_2).
has_representation(trial_of_nutrients_lagtime_c00108_24_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00108_24_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00108_24_result_2,trial_of_nutrients_lagtime_c00108_24_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00108_24_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00108_24_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00108_24_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00108_25,trial_of_nutrients_lagtime_c00108_25_design).
design(trial_of_nutrients_lagtime_c00108_25_design).
has_proposition(trial_of_nutrients_lagtime_c00108_25_design,trial_of_nutrients_lagtime_c00108_25_factor).
factor(trial_of_nutrients_lagtime_c00108_25_factor).
has_representation(trial_of_nutrients_lagtime_c00108_25_factor,'presence or absence of c00108').
has_input(trial_of_nutrients_lagtime_c00108_25,trial_of_nutrients_lagtime_c00108_25_data).
data(trial_of_nutrients_lagtime_c00108_25_data).
has_part(trial_of_nutrients_lagtime_c00108_25_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00108_25_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00108_25_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00108_25,'nature-loop1_expt001-plate008').
plate('nature-loop1_expt001-plate008').
has_proposition(trial_of_nutrients_lagtime_c00108_25,trial_of_nutrients_lagtime_c00108_25_result).
result(trial_of_nutrients_lagtime_c00108_25_result).
has_part(trial_of_nutrients_lagtime_c00108_25_result,trial_of_nutrients_lagtime_c00108_25_result_1).
has_representation(trial_of_nutrients_lagtime_c00108_25_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00108_25_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00108_25_result_1,trial_of_nutrients_lagtime_c00108_25_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00108_25_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00108_25_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00108_25_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00108_25_result,trial_of_nutrients_lagtime_c00108_25_result_2).
has_representation(trial_of_nutrients_lagtime_c00108_25_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00108_25_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00108_25_result_2,trial_of_nutrients_lagtime_c00108_25_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00108_25_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00108_25_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00108_25_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00108,trial_of_nutrients_lagtime_c00108_results).
result(trial_of_nutrients_lagtime_c00108_results).
has_part(trial_of_nutrients_lagtime_c00108_results,trial_of_nutrients_lagtime_c00108_results_1).
has_representation(trial_of_nutrients_lagtime_c00108_results_1,'median of wildtype medians in minimal').
text_representation('median of wildtype medians in minimal').
has_proposition(trial_of_nutrients_lagtime_c00108_results_1,trial_of_nutrients_lagtime_c00108_results_1_proc).
procedure(trial_of_nutrients_lagtime_c00108_results_1_proc).
has_proposition(trial_of_nutrients_lagtime_c00108_results_1_proc,'procedures/remove_dupl_medians_nut.R').
link('procedures/remove_dupl_medians_nut.R').
has_part(trial_of_nutrients_lagtime_c00108_results,trial_of_nutrients_lagtime_c00108_results_2).
has_representation(trial_of_nutrients_lagtime_c00108_results_2,'median of wildtype medians in minimal with metabolite').
text_representation('median of wildtype medians in minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00108_results_2,trial_of_nutrients_lagtime_c00108_results_2_proc).
procedure(trial_of_nutrients_lagtime_c00108_results_2_proc).
has_proposition(trial_of_nutrients_lagtime_c00108_results_2_proc,'procedures/remove_dupl_medians_nut.R').
link('procedures/remove_dupl_medians_nut.R').
has_part(trial_of_nutrients_lagtime_c00108_results,trial_of_nutrients_lagtime_c00108_results_3).
has_representation(trial_of_nutrients_lagtime_c00108_results_3,'difference between trial_of_nutrients_lagtime_c00108_results_1 and trial_of_nutrients_lagtime_c00108_results_2').
text_representation('difference between trial_of_nutrients_lagtime_c00108_results_1 and trial_of_nutrients_lagtime_c00108_results_2').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_result).
result(study_on_rich_growthrate_result).
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_1).
has_representation(study_on_rich_growthrate_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_rich_growthrate_result_1,'results/wr_kr_growth_rate.csv').
link('results/wr_kr_growth_rate.csv').
has_proposition(study_on_rich_growthrate_result_1,study_on_rich_growthrate_result_1_proc).
procedure(study_on_rich_growthrate_result_1_proc).
has_proposition(study_on_rich_growthrate_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_2).
has_representation(study_on_rich_growthrate_result_2,'bar graph (histogram) plotting study_on_rich_growthrate_result_1').
text_representation('bar graph (histogram) plotting study_on_rich_growthrate_result_1').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate1.tiff').
link('results/kr_wr_growth_rate1.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate2.tiff').
link('results/kr_wr_growth_rate2.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/overlayed_growth_rate.tiff').
link('results/overlayed_growth_rate.tiff').
has_proposition(study_on_rich_growthrate_result_2,study_on_rich_growthrate_result_2_proc).
procedure(study_on_rich_growthrate_result_2_proc).
has_proposition(study_on_rich_growthrate_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_conclusion).
conclusion(study_on_rich_growthrate_conclusion).
has_representation(study_on_rich_growthrate_conclusion,'The knockouts have higher growth rate in rich than the wild type').
text_representation('The knockouts have higher growth rate in rich than the wild type').
has_proposition(study_on_rich_growthrate_conclusion,'obtain statistical mode of study_on_rich_growthrate_result_1').
procedure('obtain statistical mode of study_on_rich_growthrate_result_1').
text_representation('obtain statistical mode of study_on_rich_growthrate_result_1').
has_part(study_of_nutrients_lagtime,trial_of_nutrients_lagtime_c00079).
trial(trial_of_nutrients_lagtime_c00079).
has_agent(trial_of_nutrients_lagtime_c00079,c00079).
metabolite(c00079).
has_proposition(trial_of_nutrients_lagtime_c00079_1,trial_of_nutrients_lagtime_c00079_1_design).
design(trial_of_nutrients_lagtime_c00079_1_design).
has_proposition(trial_of_nutrients_lagtime_c00079_1_design,trial_of_nutrients_lagtime_c00079_1_factor).
factor(trial_of_nutrients_lagtime_c00079_1_factor).
has_representation(trial_of_nutrients_lagtime_c00079_1_factor,'presence or absence of c00079').
has_input(trial_of_nutrients_lagtime_c00079_1,trial_of_nutrients_lagtime_c00079_1_data).
data(trial_of_nutrients_lagtime_c00079_1_data).
has_part(trial_of_nutrients_lagtime_c00079_1_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00079_1_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00079_1_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00079_1,'nature-loop3_expt003-plate001').
plate('nature-loop3_expt003-plate001').
has_proposition(trial_of_nutrients_lagtime_c00079_1,trial_of_nutrients_lagtime_c00079_1_result).
result(trial_of_nutrients_lagtime_c00079_1_result).
has_part(trial_of_nutrients_lagtime_c00079_1_result,trial_of_nutrients_lagtime_c00079_1_result_1).
has_representation(trial_of_nutrients_lagtime_c00079_1_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00079_1_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00079_1_result_1,trial_of_nutrients_lagtime_c00079_1_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00079_1_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00079_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00079_1_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00079_1_result,trial_of_nutrients_lagtime_c00079_1_result_2).
has_representation(trial_of_nutrients_lagtime_c00079_1_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00079_1_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00079_1_result_2,trial_of_nutrients_lagtime_c00079_1_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00079_1_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00079_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00079_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00079_2,trial_of_nutrients_lagtime_c00079_2_design).
design(trial_of_nutrients_lagtime_c00079_2_design).
has_proposition(trial_of_nutrients_lagtime_c00079_2_design,trial_of_nutrients_lagtime_c00079_2_factor).
factor(trial_of_nutrients_lagtime_c00079_2_factor).
has_representation(trial_of_nutrients_lagtime_c00079_2_factor,'presence or absence of c00079').
has_input(trial_of_nutrients_lagtime_c00079_2,trial_of_nutrients_lagtime_c00079_2_data).
data(trial_of_nutrients_lagtime_c00079_2_data).
has_part(trial_of_nutrients_lagtime_c00079_2_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00079_2_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00079_2_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00079_2,'nature-loop3_expt003-plate008').
plate('nature-loop3_expt003-plate008').
has_proposition(trial_of_nutrients_lagtime_c00079_2,trial_of_nutrients_lagtime_c00079_2_result).
result(trial_of_nutrients_lagtime_c00079_2_result).
has_part(trial_of_nutrients_lagtime_c00079_2_result,trial_of_nutrients_lagtime_c00079_2_result_1).
has_representation(trial_of_nutrients_lagtime_c00079_2_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00079_2_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00079_2_result_1,trial_of_nutrients_lagtime_c00079_2_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00079_2_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00079_2_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00079_2_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00079_2_result,trial_of_nutrients_lagtime_c00079_2_result_2).
has_representation(trial_of_nutrients_lagtime_c00079_2_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00079_2_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00079_2_result_2,trial_of_nutrients_lagtime_c00079_2_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00079_2_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00079_2_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00079_2_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00079_3,trial_of_nutrients_lagtime_c00079_3_design).
design(trial_of_nutrients_lagtime_c00079_3_design).
has_proposition(trial_of_nutrients_lagtime_c00079_3_design,trial_of_nutrients_lagtime_c00079_3_factor).
factor(trial_of_nutrients_lagtime_c00079_3_factor).
has_representation(trial_of_nutrients_lagtime_c00079_3_factor,'presence or absence of c00079').
has_input(trial_of_nutrients_lagtime_c00079_3,trial_of_nutrients_lagtime_c00079_3_data).
data(trial_of_nutrients_lagtime_c00079_3_data).
has_part(trial_of_nutrients_lagtime_c00079_3_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00079_3_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00079_3_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00079_3,'nature-loop3_expt005-plate003').
plate('nature-loop3_expt005-plate003').
has_proposition(trial_of_nutrients_lagtime_c00079_3,trial_of_nutrients_lagtime_c00079_3_result).
result(trial_of_nutrients_lagtime_c00079_3_result).
has_part(trial_of_nutrients_lagtime_c00079_3_result,trial_of_nutrients_lagtime_c00079_3_result_1).
has_representation(trial_of_nutrients_lagtime_c00079_3_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00079_3_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00079_3_result_1,trial_of_nutrients_lagtime_c00079_3_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00079_3_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00079_3_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00079_3_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00079_3_result,trial_of_nutrients_lagtime_c00079_3_result_2).
has_representation(trial_of_nutrients_lagtime_c00079_3_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00079_3_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00079_3_result_2,trial_of_nutrients_lagtime_c00079_3_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00079_3_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00079_3_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00079_3_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00079_4,trial_of_nutrients_lagtime_c00079_4_design).
design(trial_of_nutrients_lagtime_c00079_4_design).
has_proposition(trial_of_nutrients_lagtime_c00079_4_design,trial_of_nutrients_lagtime_c00079_4_factor).
factor(trial_of_nutrients_lagtime_c00079_4_factor).
has_representation(trial_of_nutrients_lagtime_c00079_4_factor,'presence or absence of c00079').
has_input(trial_of_nutrients_lagtime_c00079_4,trial_of_nutrients_lagtime_c00079_4_data).
data(trial_of_nutrients_lagtime_c00079_4_data).
has_part(trial_of_nutrients_lagtime_c00079_4_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00079_4_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00079_4_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00079_4,'nature-loop3_expt005-plate008').
plate('nature-loop3_expt005-plate008').
has_proposition(trial_of_nutrients_lagtime_c00079_4,trial_of_nutrients_lagtime_c00079_4_result).
result(trial_of_nutrients_lagtime_c00079_4_result).
has_part(trial_of_nutrients_lagtime_c00079_4_result,trial_of_nutrients_lagtime_c00079_4_result_1).
has_representation(trial_of_nutrients_lagtime_c00079_4_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00079_4_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00079_4_result_1,trial_of_nutrients_lagtime_c00079_4_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00079_4_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00079_4_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00079_4_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00079_4_result,trial_of_nutrients_lagtime_c00079_4_result_2).
has_representation(trial_of_nutrients_lagtime_c00079_4_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00079_4_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00079_4_result_2,trial_of_nutrients_lagtime_c00079_4_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00079_4_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00079_4_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00079_4_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00079,trial_of_nutrients_lagtime_c00079_results).
result(trial_of_nutrients_lagtime_c00079_results).
has_part(trial_of_nutrients_lagtime_c00079_results,trial_of_nutrients_lagtime_c00079_results_1).
has_representation(trial_of_nutrients_lagtime_c00079_results_1,'median of wildtype medians in minimal').
text_representation('median of wildtype medians in minimal').
has_proposition(trial_of_nutrients_lagtime_c00079_results_1,trial_of_nutrients_lagtime_c00079_results_1_proc).
procedure(trial_of_nutrients_lagtime_c00079_results_1_proc).
has_proposition(trial_of_nutrients_lagtime_c00079_results_1_proc,'procedures/remove_dupl_medians_nut.R').
link('procedures/remove_dupl_medians_nut.R').
has_part(trial_of_nutrients_lagtime_c00079_results,trial_of_nutrients_lagtime_c00079_results_2).
has_representation(trial_of_nutrients_lagtime_c00079_results_2,'median of wildtype medians in minimal with metabolite').
text_representation('median of wildtype medians in minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00079_results_2,trial_of_nutrients_lagtime_c00079_results_2_proc).
procedure(trial_of_nutrients_lagtime_c00079_results_2_proc).
has_proposition(trial_of_nutrients_lagtime_c00079_results_2_proc,'procedures/remove_dupl_medians_nut.R').
link('procedures/remove_dupl_medians_nut.R').
has_part(trial_of_nutrients_lagtime_c00079_results,trial_of_nutrients_lagtime_c00079_results_3).
has_representation(trial_of_nutrients_lagtime_c00079_results_3,'difference between trial_of_nutrients_lagtime_c00079_results_1 and trial_of_nutrients_lagtime_c00079_results_2').
text_representation('difference between trial_of_nutrients_lagtime_c00079_results_1 and trial_of_nutrients_lagtime_c00079_results_2').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_result).
result(study_on_rich_growthrate_result).
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_1).
has_representation(study_on_rich_growthrate_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_rich_growthrate_result_1,'results/wr_kr_growth_rate.csv').
link('results/wr_kr_growth_rate.csv').
has_proposition(study_on_rich_growthrate_result_1,study_on_rich_growthrate_result_1_proc).
procedure(study_on_rich_growthrate_result_1_proc).
has_proposition(study_on_rich_growthrate_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_2).
has_representation(study_on_rich_growthrate_result_2,'bar graph (histogram) plotting study_on_rich_growthrate_result_1').
text_representation('bar graph (histogram) plotting study_on_rich_growthrate_result_1').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate1.tiff').
link('results/kr_wr_growth_rate1.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate2.tiff').
link('results/kr_wr_growth_rate2.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/overlayed_growth_rate.tiff').
link('results/overlayed_growth_rate.tiff').
has_proposition(study_on_rich_growthrate_result_2,study_on_rich_growthrate_result_2_proc).
procedure(study_on_rich_growthrate_result_2_proc).
has_proposition(study_on_rich_growthrate_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_conclusion).
conclusion(study_on_rich_growthrate_conclusion).
has_representation(study_on_rich_growthrate_conclusion,'The knockouts have higher growth rate in rich than the wild type').
text_representation('The knockouts have higher growth rate in rich than the wild type').
has_proposition(study_on_rich_growthrate_conclusion,'obtain statistical mode of study_on_rich_growthrate_result_1').
procedure('obtain statistical mode of study_on_rich_growthrate_result_1').
text_representation('obtain statistical mode of study_on_rich_growthrate_result_1').
has_part(study_of_nutrients_lagtime,trial_of_nutrients_lagtime_c00078).
trial(trial_of_nutrients_lagtime_c00078).
has_agent(trial_of_nutrients_lagtime_c00078,c00078).
metabolite(c00078).
has_proposition(trial_of_nutrients_lagtime_c00078_1,trial_of_nutrients_lagtime_c00078_1_design).
design(trial_of_nutrients_lagtime_c00078_1_design).
has_proposition(trial_of_nutrients_lagtime_c00078_1_design,trial_of_nutrients_lagtime_c00078_1_factor).
factor(trial_of_nutrients_lagtime_c00078_1_factor).
has_representation(trial_of_nutrients_lagtime_c00078_1_factor,'presence or absence of c00078').
has_input(trial_of_nutrients_lagtime_c00078_1,trial_of_nutrients_lagtime_c00078_1_data).
data(trial_of_nutrients_lagtime_c00078_1_data).
has_part(trial_of_nutrients_lagtime_c00078_1_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00078_1_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00078_1_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00078_1,'nature-loop3_expt002-plate001').
plate('nature-loop3_expt002-plate001').
has_proposition(trial_of_nutrients_lagtime_c00078_1,trial_of_nutrients_lagtime_c00078_1_result).
result(trial_of_nutrients_lagtime_c00078_1_result).
has_part(trial_of_nutrients_lagtime_c00078_1_result,trial_of_nutrients_lagtime_c00078_1_result_1).
has_representation(trial_of_nutrients_lagtime_c00078_1_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00078_1_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00078_1_result_1,trial_of_nutrients_lagtime_c00078_1_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00078_1_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00078_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00078_1_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00078_1_result,trial_of_nutrients_lagtime_c00078_1_result_2).
has_representation(trial_of_nutrients_lagtime_c00078_1_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00078_1_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00078_1_result_2,trial_of_nutrients_lagtime_c00078_1_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00078_1_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00078_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00078_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00078_2,trial_of_nutrients_lagtime_c00078_2_design).
design(trial_of_nutrients_lagtime_c00078_2_design).
has_proposition(trial_of_nutrients_lagtime_c00078_2_design,trial_of_nutrients_lagtime_c00078_2_factor).
factor(trial_of_nutrients_lagtime_c00078_2_factor).
has_representation(trial_of_nutrients_lagtime_c00078_2_factor,'presence or absence of c00078').
has_input(trial_of_nutrients_lagtime_c00078_2,trial_of_nutrients_lagtime_c00078_2_data).
data(trial_of_nutrients_lagtime_c00078_2_data).
has_part(trial_of_nutrients_lagtime_c00078_2_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00078_2_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00078_2_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00078_2,'nature-loop3_expt002-plate002').
plate('nature-loop3_expt002-plate002').
has_proposition(trial_of_nutrients_lagtime_c00078_2,trial_of_nutrients_lagtime_c00078_2_result).
result(trial_of_nutrients_lagtime_c00078_2_result).
has_part(trial_of_nutrients_lagtime_c00078_2_result,trial_of_nutrients_lagtime_c00078_2_result_1).
has_representation(trial_of_nutrients_lagtime_c00078_2_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00078_2_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00078_2_result_1,trial_of_nutrients_lagtime_c00078_2_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00078_2_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00078_2_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00078_2_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00078_2_result,trial_of_nutrients_lagtime_c00078_2_result_2).
has_representation(trial_of_nutrients_lagtime_c00078_2_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00078_2_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00078_2_result_2,trial_of_nutrients_lagtime_c00078_2_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00078_2_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00078_2_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00078_2_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00078_3,trial_of_nutrients_lagtime_c00078_3_design).
design(trial_of_nutrients_lagtime_c00078_3_design).
has_proposition(trial_of_nutrients_lagtime_c00078_3_design,trial_of_nutrients_lagtime_c00078_3_factor).
factor(trial_of_nutrients_lagtime_c00078_3_factor).
has_representation(trial_of_nutrients_lagtime_c00078_3_factor,'presence or absence of c00078').
has_input(trial_of_nutrients_lagtime_c00078_3,trial_of_nutrients_lagtime_c00078_3_data).
data(trial_of_nutrients_lagtime_c00078_3_data).
has_part(trial_of_nutrients_lagtime_c00078_3_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00078_3_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00078_3_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00078_3,'nature-loop3_expt002-plate004').
plate('nature-loop3_expt002-plate004').
has_proposition(trial_of_nutrients_lagtime_c00078_3,trial_of_nutrients_lagtime_c00078_3_result).
result(trial_of_nutrients_lagtime_c00078_3_result).
has_part(trial_of_nutrients_lagtime_c00078_3_result,trial_of_nutrients_lagtime_c00078_3_result_1).
has_representation(trial_of_nutrients_lagtime_c00078_3_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00078_3_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00078_3_result_1,trial_of_nutrients_lagtime_c00078_3_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00078_3_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00078_3_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00078_3_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00078_3_result,trial_of_nutrients_lagtime_c00078_3_result_2).
has_representation(trial_of_nutrients_lagtime_c00078_3_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00078_3_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00078_3_result_2,trial_of_nutrients_lagtime_c00078_3_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00078_3_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00078_3_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00078_3_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00078_4,trial_of_nutrients_lagtime_c00078_4_design).
design(trial_of_nutrients_lagtime_c00078_4_design).
has_proposition(trial_of_nutrients_lagtime_c00078_4_design,trial_of_nutrients_lagtime_c00078_4_factor).
factor(trial_of_nutrients_lagtime_c00078_4_factor).
has_representation(trial_of_nutrients_lagtime_c00078_4_factor,'presence or absence of c00078').
has_input(trial_of_nutrients_lagtime_c00078_4,trial_of_nutrients_lagtime_c00078_4_data).
data(trial_of_nutrients_lagtime_c00078_4_data).
has_part(trial_of_nutrients_lagtime_c00078_4_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00078_4_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00078_4_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00078_4,'nature-loop3_expt002-plate005').
plate('nature-loop3_expt002-plate005').
has_proposition(trial_of_nutrients_lagtime_c00078_4,trial_of_nutrients_lagtime_c00078_4_result).
result(trial_of_nutrients_lagtime_c00078_4_result).
has_part(trial_of_nutrients_lagtime_c00078_4_result,trial_of_nutrients_lagtime_c00078_4_result_1).
has_representation(trial_of_nutrients_lagtime_c00078_4_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00078_4_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00078_4_result_1,trial_of_nutrients_lagtime_c00078_4_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00078_4_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00078_4_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00078_4_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00078_4_result,trial_of_nutrients_lagtime_c00078_4_result_2).
has_representation(trial_of_nutrients_lagtime_c00078_4_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00078_4_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00078_4_result_2,trial_of_nutrients_lagtime_c00078_4_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00078_4_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00078_4_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00078_4_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00078_5,trial_of_nutrients_lagtime_c00078_5_design).
design(trial_of_nutrients_lagtime_c00078_5_design).
has_proposition(trial_of_nutrients_lagtime_c00078_5_design,trial_of_nutrients_lagtime_c00078_5_factor).
factor(trial_of_nutrients_lagtime_c00078_5_factor).
has_representation(trial_of_nutrients_lagtime_c00078_5_factor,'presence or absence of c00078').
has_input(trial_of_nutrients_lagtime_c00078_5,trial_of_nutrients_lagtime_c00078_5_data).
data(trial_of_nutrients_lagtime_c00078_5_data).
has_part(trial_of_nutrients_lagtime_c00078_5_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00078_5_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00078_5_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00078_5,'nature-loop3_expt002-plate006').
plate('nature-loop3_expt002-plate006').
has_proposition(trial_of_nutrients_lagtime_c00078_5,trial_of_nutrients_lagtime_c00078_5_result).
result(trial_of_nutrients_lagtime_c00078_5_result).
has_part(trial_of_nutrients_lagtime_c00078_5_result,trial_of_nutrients_lagtime_c00078_5_result_1).
has_representation(trial_of_nutrients_lagtime_c00078_5_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00078_5_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00078_5_result_1,trial_of_nutrients_lagtime_c00078_5_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00078_5_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00078_5_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00078_5_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00078_5_result,trial_of_nutrients_lagtime_c00078_5_result_2).
has_representation(trial_of_nutrients_lagtime_c00078_5_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00078_5_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00078_5_result_2,trial_of_nutrients_lagtime_c00078_5_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00078_5_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00078_5_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00078_5_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00078_6,trial_of_nutrients_lagtime_c00078_6_design).
design(trial_of_nutrients_lagtime_c00078_6_design).
has_proposition(trial_of_nutrients_lagtime_c00078_6_design,trial_of_nutrients_lagtime_c00078_6_factor).
factor(trial_of_nutrients_lagtime_c00078_6_factor).
has_representation(trial_of_nutrients_lagtime_c00078_6_factor,'presence or absence of c00078').
has_input(trial_of_nutrients_lagtime_c00078_6,trial_of_nutrients_lagtime_c00078_6_data).
data(trial_of_nutrients_lagtime_c00078_6_data).
has_part(trial_of_nutrients_lagtime_c00078_6_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00078_6_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00078_6_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00078_6,'nature-loop3_expt002-plate007').
plate('nature-loop3_expt002-plate007').
has_proposition(trial_of_nutrients_lagtime_c00078_6,trial_of_nutrients_lagtime_c00078_6_result).
result(trial_of_nutrients_lagtime_c00078_6_result).
has_part(trial_of_nutrients_lagtime_c00078_6_result,trial_of_nutrients_lagtime_c00078_6_result_1).
has_representation(trial_of_nutrients_lagtime_c00078_6_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00078_6_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00078_6_result_1,trial_of_nutrients_lagtime_c00078_6_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00078_6_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00078_6_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00078_6_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00078_6_result,trial_of_nutrients_lagtime_c00078_6_result_2).
has_representation(trial_of_nutrients_lagtime_c00078_6_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00078_6_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00078_6_result_2,trial_of_nutrients_lagtime_c00078_6_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00078_6_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00078_6_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00078_6_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00078_7,trial_of_nutrients_lagtime_c00078_7_design).
design(trial_of_nutrients_lagtime_c00078_7_design).
has_proposition(trial_of_nutrients_lagtime_c00078_7_design,trial_of_nutrients_lagtime_c00078_7_factor).
factor(trial_of_nutrients_lagtime_c00078_7_factor).
has_representation(trial_of_nutrients_lagtime_c00078_7_factor,'presence or absence of c00078').
has_input(trial_of_nutrients_lagtime_c00078_7,trial_of_nutrients_lagtime_c00078_7_data).
data(trial_of_nutrients_lagtime_c00078_7_data).
has_part(trial_of_nutrients_lagtime_c00078_7_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00078_7_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00078_7_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00078_7,'nature-loop3_expt002-plate008').
plate('nature-loop3_expt002-plate008').
has_proposition(trial_of_nutrients_lagtime_c00078_7,trial_of_nutrients_lagtime_c00078_7_result).
result(trial_of_nutrients_lagtime_c00078_7_result).
has_part(trial_of_nutrients_lagtime_c00078_7_result,trial_of_nutrients_lagtime_c00078_7_result_1).
has_representation(trial_of_nutrients_lagtime_c00078_7_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00078_7_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00078_7_result_1,trial_of_nutrients_lagtime_c00078_7_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00078_7_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00078_7_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00078_7_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00078_7_result,trial_of_nutrients_lagtime_c00078_7_result_2).
has_representation(trial_of_nutrients_lagtime_c00078_7_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00078_7_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00078_7_result_2,trial_of_nutrients_lagtime_c00078_7_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00078_7_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00078_7_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00078_7_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00078_8,trial_of_nutrients_lagtime_c00078_8_design).
design(trial_of_nutrients_lagtime_c00078_8_design).
has_proposition(trial_of_nutrients_lagtime_c00078_8_design,trial_of_nutrients_lagtime_c00078_8_factor).
factor(trial_of_nutrients_lagtime_c00078_8_factor).
has_representation(trial_of_nutrients_lagtime_c00078_8_factor,'presence or absence of c00078').
has_input(trial_of_nutrients_lagtime_c00078_8,trial_of_nutrients_lagtime_c00078_8_data).
data(trial_of_nutrients_lagtime_c00078_8_data).
has_part(trial_of_nutrients_lagtime_c00078_8_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00078_8_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00078_8_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00078_8,'nature-loop3_expt004-plate003').
plate('nature-loop3_expt004-plate003').
has_proposition(trial_of_nutrients_lagtime_c00078_8,trial_of_nutrients_lagtime_c00078_8_result).
result(trial_of_nutrients_lagtime_c00078_8_result).
has_part(trial_of_nutrients_lagtime_c00078_8_result,trial_of_nutrients_lagtime_c00078_8_result_1).
has_representation(trial_of_nutrients_lagtime_c00078_8_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00078_8_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00078_8_result_1,trial_of_nutrients_lagtime_c00078_8_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00078_8_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00078_8_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00078_8_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00078_8_result,trial_of_nutrients_lagtime_c00078_8_result_2).
has_representation(trial_of_nutrients_lagtime_c00078_8_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00078_8_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00078_8_result_2,trial_of_nutrients_lagtime_c00078_8_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00078_8_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00078_8_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00078_8_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00078_9,trial_of_nutrients_lagtime_c00078_9_design).
design(trial_of_nutrients_lagtime_c00078_9_design).
has_proposition(trial_of_nutrients_lagtime_c00078_9_design,trial_of_nutrients_lagtime_c00078_9_factor).
factor(trial_of_nutrients_lagtime_c00078_9_factor).
has_representation(trial_of_nutrients_lagtime_c00078_9_factor,'presence or absence of c00078').
has_input(trial_of_nutrients_lagtime_c00078_9,trial_of_nutrients_lagtime_c00078_9_data).
data(trial_of_nutrients_lagtime_c00078_9_data).
has_part(trial_of_nutrients_lagtime_c00078_9_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00078_9_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00078_9_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00078_9,'nature-loop2_expt001-plate001').
plate('nature-loop2_expt001-plate001').
has_proposition(trial_of_nutrients_lagtime_c00078_9,trial_of_nutrients_lagtime_c00078_9_result).
result(trial_of_nutrients_lagtime_c00078_9_result).
has_part(trial_of_nutrients_lagtime_c00078_9_result,trial_of_nutrients_lagtime_c00078_9_result_1).
has_representation(trial_of_nutrients_lagtime_c00078_9_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00078_9_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00078_9_result_1,trial_of_nutrients_lagtime_c00078_9_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00078_9_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00078_9_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00078_9_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00078_9_result,trial_of_nutrients_lagtime_c00078_9_result_2).
has_representation(trial_of_nutrients_lagtime_c00078_9_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00078_9_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00078_9_result_2,trial_of_nutrients_lagtime_c00078_9_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00078_9_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00078_9_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00078_9_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00078_10,trial_of_nutrients_lagtime_c00078_10_design).
design(trial_of_nutrients_lagtime_c00078_10_design).
has_proposition(trial_of_nutrients_lagtime_c00078_10_design,trial_of_nutrients_lagtime_c00078_10_factor).
factor(trial_of_nutrients_lagtime_c00078_10_factor).
has_representation(trial_of_nutrients_lagtime_c00078_10_factor,'presence or absence of c00078').
has_input(trial_of_nutrients_lagtime_c00078_10,trial_of_nutrients_lagtime_c00078_10_data).
data(trial_of_nutrients_lagtime_c00078_10_data).
has_part(trial_of_nutrients_lagtime_c00078_10_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00078_10_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00078_10_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00078_10,'nature-loop2_expt001-plate003').
plate('nature-loop2_expt001-plate003').
has_proposition(trial_of_nutrients_lagtime_c00078_10,trial_of_nutrients_lagtime_c00078_10_result).
result(trial_of_nutrients_lagtime_c00078_10_result).
has_part(trial_of_nutrients_lagtime_c00078_10_result,trial_of_nutrients_lagtime_c00078_10_result_1).
has_representation(trial_of_nutrients_lagtime_c00078_10_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00078_10_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00078_10_result_1,trial_of_nutrients_lagtime_c00078_10_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00078_10_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00078_10_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00078_10_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00078_10_result,trial_of_nutrients_lagtime_c00078_10_result_2).
has_representation(trial_of_nutrients_lagtime_c00078_10_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00078_10_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00078_10_result_2,trial_of_nutrients_lagtime_c00078_10_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00078_10_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00078_10_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00078_10_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00078_11,trial_of_nutrients_lagtime_c00078_11_design).
design(trial_of_nutrients_lagtime_c00078_11_design).
has_proposition(trial_of_nutrients_lagtime_c00078_11_design,trial_of_nutrients_lagtime_c00078_11_factor).
factor(trial_of_nutrients_lagtime_c00078_11_factor).
has_representation(trial_of_nutrients_lagtime_c00078_11_factor,'presence or absence of c00078').
has_input(trial_of_nutrients_lagtime_c00078_11,trial_of_nutrients_lagtime_c00078_11_data).
data(trial_of_nutrients_lagtime_c00078_11_data).
has_part(trial_of_nutrients_lagtime_c00078_11_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00078_11_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00078_11_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00078_11,'nature-loop2_expt001-plate004').
plate('nature-loop2_expt001-plate004').
has_proposition(trial_of_nutrients_lagtime_c00078_11,trial_of_nutrients_lagtime_c00078_11_result).
result(trial_of_nutrients_lagtime_c00078_11_result).
has_part(trial_of_nutrients_lagtime_c00078_11_result,trial_of_nutrients_lagtime_c00078_11_result_1).
has_representation(trial_of_nutrients_lagtime_c00078_11_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00078_11_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00078_11_result_1,trial_of_nutrients_lagtime_c00078_11_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00078_11_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00078_11_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00078_11_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00078_11_result,trial_of_nutrients_lagtime_c00078_11_result_2).
has_representation(trial_of_nutrients_lagtime_c00078_11_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00078_11_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00078_11_result_2,trial_of_nutrients_lagtime_c00078_11_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00078_11_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00078_11_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00078_11_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00078_12,trial_of_nutrients_lagtime_c00078_12_design).
design(trial_of_nutrients_lagtime_c00078_12_design).
has_proposition(trial_of_nutrients_lagtime_c00078_12_design,trial_of_nutrients_lagtime_c00078_12_factor).
factor(trial_of_nutrients_lagtime_c00078_12_factor).
has_representation(trial_of_nutrients_lagtime_c00078_12_factor,'presence or absence of c00078').
has_input(trial_of_nutrients_lagtime_c00078_12,trial_of_nutrients_lagtime_c00078_12_data).
data(trial_of_nutrients_lagtime_c00078_12_data).
has_part(trial_of_nutrients_lagtime_c00078_12_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00078_12_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00078_12_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00078_12,'nature-loop2_expt001-plate005').
plate('nature-loop2_expt001-plate005').
has_proposition(trial_of_nutrients_lagtime_c00078_12,trial_of_nutrients_lagtime_c00078_12_result).
result(trial_of_nutrients_lagtime_c00078_12_result).
has_part(trial_of_nutrients_lagtime_c00078_12_result,trial_of_nutrients_lagtime_c00078_12_result_1).
has_representation(trial_of_nutrients_lagtime_c00078_12_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00078_12_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00078_12_result_1,trial_of_nutrients_lagtime_c00078_12_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00078_12_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00078_12_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00078_12_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00078_12_result,trial_of_nutrients_lagtime_c00078_12_result_2).
has_representation(trial_of_nutrients_lagtime_c00078_12_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00078_12_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00078_12_result_2,trial_of_nutrients_lagtime_c00078_12_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00078_12_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00078_12_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00078_12_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00078_13,trial_of_nutrients_lagtime_c00078_13_design).
design(trial_of_nutrients_lagtime_c00078_13_design).
has_proposition(trial_of_nutrients_lagtime_c00078_13_design,trial_of_nutrients_lagtime_c00078_13_factor).
factor(trial_of_nutrients_lagtime_c00078_13_factor).
has_representation(trial_of_nutrients_lagtime_c00078_13_factor,'presence or absence of c00078').
has_input(trial_of_nutrients_lagtime_c00078_13,trial_of_nutrients_lagtime_c00078_13_data).
data(trial_of_nutrients_lagtime_c00078_13_data).
has_part(trial_of_nutrients_lagtime_c00078_13_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00078_13_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00078_13_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00078_13,'nature-loop2_expt001-plate006').
plate('nature-loop2_expt001-plate006').
has_proposition(trial_of_nutrients_lagtime_c00078_13,trial_of_nutrients_lagtime_c00078_13_result).
result(trial_of_nutrients_lagtime_c00078_13_result).
has_part(trial_of_nutrients_lagtime_c00078_13_result,trial_of_nutrients_lagtime_c00078_13_result_1).
has_representation(trial_of_nutrients_lagtime_c00078_13_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00078_13_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00078_13_result_1,trial_of_nutrients_lagtime_c00078_13_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00078_13_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00078_13_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00078_13_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00078_13_result,trial_of_nutrients_lagtime_c00078_13_result_2).
has_representation(trial_of_nutrients_lagtime_c00078_13_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00078_13_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00078_13_result_2,trial_of_nutrients_lagtime_c00078_13_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00078_13_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00078_13_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00078_13_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00078_14,trial_of_nutrients_lagtime_c00078_14_design).
design(trial_of_nutrients_lagtime_c00078_14_design).
has_proposition(trial_of_nutrients_lagtime_c00078_14_design,trial_of_nutrients_lagtime_c00078_14_factor).
factor(trial_of_nutrients_lagtime_c00078_14_factor).
has_representation(trial_of_nutrients_lagtime_c00078_14_factor,'presence or absence of c00078').
has_input(trial_of_nutrients_lagtime_c00078_14,trial_of_nutrients_lagtime_c00078_14_data).
data(trial_of_nutrients_lagtime_c00078_14_data).
has_part(trial_of_nutrients_lagtime_c00078_14_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00078_14_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00078_14_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00078_14,'nature-loop2_expt001-plate008').
plate('nature-loop2_expt001-plate008').
has_proposition(trial_of_nutrients_lagtime_c00078_14,trial_of_nutrients_lagtime_c00078_14_result).
result(trial_of_nutrients_lagtime_c00078_14_result).
has_part(trial_of_nutrients_lagtime_c00078_14_result,trial_of_nutrients_lagtime_c00078_14_result_1).
has_representation(trial_of_nutrients_lagtime_c00078_14_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00078_14_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00078_14_result_1,trial_of_nutrients_lagtime_c00078_14_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00078_14_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00078_14_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00078_14_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00078_14_result,trial_of_nutrients_lagtime_c00078_14_result_2).
has_representation(trial_of_nutrients_lagtime_c00078_14_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00078_14_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00078_14_result_2,trial_of_nutrients_lagtime_c00078_14_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00078_14_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00078_14_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00078_14_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00078,trial_of_nutrients_lagtime_c00078_results).
result(trial_of_nutrients_lagtime_c00078_results).
has_part(trial_of_nutrients_lagtime_c00078_results,trial_of_nutrients_lagtime_c00078_results_1).
has_representation(trial_of_nutrients_lagtime_c00078_results_1,'median of wildtype medians in minimal').
text_representation('median of wildtype medians in minimal').
has_proposition(trial_of_nutrients_lagtime_c00078_results_1,trial_of_nutrients_lagtime_c00078_results_1_proc).
procedure(trial_of_nutrients_lagtime_c00078_results_1_proc).
has_proposition(trial_of_nutrients_lagtime_c00078_results_1_proc,'procedures/remove_dupl_medians_nut.R').
link('procedures/remove_dupl_medians_nut.R').
has_part(trial_of_nutrients_lagtime_c00078_results,trial_of_nutrients_lagtime_c00078_results_2).
has_representation(trial_of_nutrients_lagtime_c00078_results_2,'median of wildtype medians in minimal with metabolite').
text_representation('median of wildtype medians in minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00078_results_2,trial_of_nutrients_lagtime_c00078_results_2_proc).
procedure(trial_of_nutrients_lagtime_c00078_results_2_proc).
has_proposition(trial_of_nutrients_lagtime_c00078_results_2_proc,'procedures/remove_dupl_medians_nut.R').
link('procedures/remove_dupl_medians_nut.R').
has_part(trial_of_nutrients_lagtime_c00078_results,trial_of_nutrients_lagtime_c00078_results_3).
has_representation(trial_of_nutrients_lagtime_c00078_results_3,'difference between trial_of_nutrients_lagtime_c00078_results_1 and trial_of_nutrients_lagtime_c00078_results_2').
text_representation('difference between trial_of_nutrients_lagtime_c00078_results_1 and trial_of_nutrients_lagtime_c00078_results_2').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_result).
result(study_on_rich_growthrate_result).
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_1).
has_representation(study_on_rich_growthrate_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_rich_growthrate_result_1,'results/wr_kr_growth_rate.csv').
link('results/wr_kr_growth_rate.csv').
has_proposition(study_on_rich_growthrate_result_1,study_on_rich_growthrate_result_1_proc).
procedure(study_on_rich_growthrate_result_1_proc).
has_proposition(study_on_rich_growthrate_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_2).
has_representation(study_on_rich_growthrate_result_2,'bar graph (histogram) plotting study_on_rich_growthrate_result_1').
text_representation('bar graph (histogram) plotting study_on_rich_growthrate_result_1').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate1.tiff').
link('results/kr_wr_growth_rate1.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate2.tiff').
link('results/kr_wr_growth_rate2.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/overlayed_growth_rate.tiff').
link('results/overlayed_growth_rate.tiff').
has_proposition(study_on_rich_growthrate_result_2,study_on_rich_growthrate_result_2_proc).
procedure(study_on_rich_growthrate_result_2_proc).
has_proposition(study_on_rich_growthrate_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_conclusion).
conclusion(study_on_rich_growthrate_conclusion).
has_representation(study_on_rich_growthrate_conclusion,'The knockouts have higher growth rate in rich than the wild type').
text_representation('The knockouts have higher growth rate in rich than the wild type').
has_proposition(study_on_rich_growthrate_conclusion,'obtain statistical mode of study_on_rich_growthrate_result_1').
procedure('obtain statistical mode of study_on_rich_growthrate_result_1').
text_representation('obtain statistical mode of study_on_rich_growthrate_result_1').
has_part(study_of_nutrients_lagtime,trial_of_nutrients_lagtime_c03722).
trial(trial_of_nutrients_lagtime_c03722).
has_agent(trial_of_nutrients_lagtime_c03722,c03722).
metabolite(c03722).
has_proposition(trial_of_nutrients_lagtime_c03722_1,trial_of_nutrients_lagtime_c03722_1_design).
design(trial_of_nutrients_lagtime_c03722_1_design).
has_proposition(trial_of_nutrients_lagtime_c03722_1_design,trial_of_nutrients_lagtime_c03722_1_factor).
factor(trial_of_nutrients_lagtime_c03722_1_factor).
has_representation(trial_of_nutrients_lagtime_c03722_1_factor,'presence or absence of c03722').
has_input(trial_of_nutrients_lagtime_c03722_1,trial_of_nutrients_lagtime_c03722_1_data).
data(trial_of_nutrients_lagtime_c03722_1_data).
has_part(trial_of_nutrients_lagtime_c03722_1_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c03722_1_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c03722_1_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c03722_1,'mar07-trial7_expt001-plate001').
plate('mar07-trial7_expt001-plate001').
has_proposition(trial_of_nutrients_lagtime_c03722_1,trial_of_nutrients_lagtime_c03722_1_result).
result(trial_of_nutrients_lagtime_c03722_1_result).
has_part(trial_of_nutrients_lagtime_c03722_1_result,trial_of_nutrients_lagtime_c03722_1_result_1).
has_representation(trial_of_nutrients_lagtime_c03722_1_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c03722_1_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c03722_1_result_1,trial_of_nutrients_lagtime_c03722_1_result_1_proc).
procedure(trial_of_nutrients_lagtime_c03722_1_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c03722_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c03722_1_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c03722_1_result,trial_of_nutrients_lagtime_c03722_1_result_2).
has_representation(trial_of_nutrients_lagtime_c03722_1_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c03722_1_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c03722_1_result_2,trial_of_nutrients_lagtime_c03722_1_result_2_proc).
procedure(trial_of_nutrients_lagtime_c03722_1_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c03722_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c03722_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c03722,trial_of_nutrients_lagtime_c03722_results).
result(trial_of_nutrients_lagtime_c03722_results).
has_part(trial_of_nutrients_lagtime_c03722_results,trial_of_nutrients_lagtime_c03722_results_1).
has_representation(trial_of_nutrients_lagtime_c03722_results_1,'median of wildtype medians in minimal').
text_representation('median of wildtype medians in minimal').
has_proposition(trial_of_nutrients_lagtime_c03722_results_1,trial_of_nutrients_lagtime_c03722_results_1_proc).
procedure(trial_of_nutrients_lagtime_c03722_results_1_proc).
has_proposition(trial_of_nutrients_lagtime_c03722_results_1_proc,'procedures/remove_dupl_medians_nut.R').
link('procedures/remove_dupl_medians_nut.R').
has_part(trial_of_nutrients_lagtime_c03722_results,trial_of_nutrients_lagtime_c03722_results_2).
has_representation(trial_of_nutrients_lagtime_c03722_results_2,'median of wildtype medians in minimal with metabolite').
text_representation('median of wildtype medians in minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c03722_results_2,trial_of_nutrients_lagtime_c03722_results_2_proc).
procedure(trial_of_nutrients_lagtime_c03722_results_2_proc).
has_proposition(trial_of_nutrients_lagtime_c03722_results_2_proc,'procedures/remove_dupl_medians_nut.R').
link('procedures/remove_dupl_medians_nut.R').
has_part(trial_of_nutrients_lagtime_c03722_results,trial_of_nutrients_lagtime_c03722_results_3).
has_representation(trial_of_nutrients_lagtime_c03722_results_3,'difference between trial_of_nutrients_lagtime_c03722_results_1 and trial_of_nutrients_lagtime_c03722_results_2').
text_representation('difference between trial_of_nutrients_lagtime_c03722_results_1 and trial_of_nutrients_lagtime_c03722_results_2').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_result).
result(study_on_rich_growthrate_result).
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_1).
has_representation(study_on_rich_growthrate_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_rich_growthrate_result_1,'results/wr_kr_growth_rate.csv').
link('results/wr_kr_growth_rate.csv').
has_proposition(study_on_rich_growthrate_result_1,study_on_rich_growthrate_result_1_proc).
procedure(study_on_rich_growthrate_result_1_proc).
has_proposition(study_on_rich_growthrate_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_2).
has_representation(study_on_rich_growthrate_result_2,'bar graph (histogram) plotting study_on_rich_growthrate_result_1').
text_representation('bar graph (histogram) plotting study_on_rich_growthrate_result_1').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate1.tiff').
link('results/kr_wr_growth_rate1.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate2.tiff').
link('results/kr_wr_growth_rate2.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/overlayed_growth_rate.tiff').
link('results/overlayed_growth_rate.tiff').
has_proposition(study_on_rich_growthrate_result_2,study_on_rich_growthrate_result_2_proc).
procedure(study_on_rich_growthrate_result_2_proc).
has_proposition(study_on_rich_growthrate_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_conclusion).
conclusion(study_on_rich_growthrate_conclusion).
has_representation(study_on_rich_growthrate_conclusion,'The knockouts have higher growth rate in rich than the wild type').
text_representation('The knockouts have higher growth rate in rich than the wild type').
has_proposition(study_on_rich_growthrate_conclusion,'obtain statistical mode of study_on_rich_growthrate_result_1').
procedure('obtain statistical mode of study_on_rich_growthrate_result_1').
text_representation('obtain statistical mode of study_on_rich_growthrate_result_1').
has_part(study_of_nutrients_lagtime,trial_of_nutrients_lagtime_c00250).
trial(trial_of_nutrients_lagtime_c00250).
has_agent(trial_of_nutrients_lagtime_c00250,c00250).
metabolite(c00250).
has_proposition(trial_of_nutrients_lagtime_c00250_1,trial_of_nutrients_lagtime_c00250_1_design).
design(trial_of_nutrients_lagtime_c00250_1_design).
has_proposition(trial_of_nutrients_lagtime_c00250_1_design,trial_of_nutrients_lagtime_c00250_1_factor).
factor(trial_of_nutrients_lagtime_c00250_1_factor).
has_representation(trial_of_nutrients_lagtime_c00250_1_factor,'presence or absence of c00250').
has_input(trial_of_nutrients_lagtime_c00250_1,trial_of_nutrients_lagtime_c00250_1_data).
data(trial_of_nutrients_lagtime_c00250_1_data).
has_part(trial_of_nutrients_lagtime_c00250_1_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00250_1_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00250_1_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00250_1,'mar07-trial6_expt001-plate005').
plate('mar07-trial6_expt001-plate005').
has_proposition(trial_of_nutrients_lagtime_c00250_1,trial_of_nutrients_lagtime_c00250_1_result).
result(trial_of_nutrients_lagtime_c00250_1_result).
has_part(trial_of_nutrients_lagtime_c00250_1_result,trial_of_nutrients_lagtime_c00250_1_result_1).
has_representation(trial_of_nutrients_lagtime_c00250_1_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00250_1_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00250_1_result_1,trial_of_nutrients_lagtime_c00250_1_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00250_1_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00250_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00250_1_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00250_1_result,trial_of_nutrients_lagtime_c00250_1_result_2).
has_representation(trial_of_nutrients_lagtime_c00250_1_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00250_1_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00250_1_result_2,trial_of_nutrients_lagtime_c00250_1_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00250_1_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00250_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00250_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00250_2,trial_of_nutrients_lagtime_c00250_2_design).
design(trial_of_nutrients_lagtime_c00250_2_design).
has_proposition(trial_of_nutrients_lagtime_c00250_2_design,trial_of_nutrients_lagtime_c00250_2_factor).
factor(trial_of_nutrients_lagtime_c00250_2_factor).
has_representation(trial_of_nutrients_lagtime_c00250_2_factor,'presence or absence of c00250').
has_input(trial_of_nutrients_lagtime_c00250_2,trial_of_nutrients_lagtime_c00250_2_data).
data(trial_of_nutrients_lagtime_c00250_2_data).
has_part(trial_of_nutrients_lagtime_c00250_2_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00250_2_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00250_2_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00250_2,'mar07-trial6_expt001-plate006').
plate('mar07-trial6_expt001-plate006').
has_proposition(trial_of_nutrients_lagtime_c00250_2,trial_of_nutrients_lagtime_c00250_2_result).
result(trial_of_nutrients_lagtime_c00250_2_result).
has_part(trial_of_nutrients_lagtime_c00250_2_result,trial_of_nutrients_lagtime_c00250_2_result_1).
has_representation(trial_of_nutrients_lagtime_c00250_2_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00250_2_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00250_2_result_1,trial_of_nutrients_lagtime_c00250_2_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00250_2_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00250_2_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00250_2_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00250_2_result,trial_of_nutrients_lagtime_c00250_2_result_2).
has_representation(trial_of_nutrients_lagtime_c00250_2_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00250_2_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00250_2_result_2,trial_of_nutrients_lagtime_c00250_2_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00250_2_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00250_2_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00250_2_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00250,trial_of_nutrients_lagtime_c00250_results).
result(trial_of_nutrients_lagtime_c00250_results).
has_part(trial_of_nutrients_lagtime_c00250_results,trial_of_nutrients_lagtime_c00250_results_1).
has_representation(trial_of_nutrients_lagtime_c00250_results_1,'median of wildtype medians in minimal').
text_representation('median of wildtype medians in minimal').
has_proposition(trial_of_nutrients_lagtime_c00250_results_1,trial_of_nutrients_lagtime_c00250_results_1_proc).
procedure(trial_of_nutrients_lagtime_c00250_results_1_proc).
has_proposition(trial_of_nutrients_lagtime_c00250_results_1_proc,'procedures/remove_dupl_medians_nut.R').
link('procedures/remove_dupl_medians_nut.R').
has_part(trial_of_nutrients_lagtime_c00250_results,trial_of_nutrients_lagtime_c00250_results_2).
has_representation(trial_of_nutrients_lagtime_c00250_results_2,'median of wildtype medians in minimal with metabolite').
text_representation('median of wildtype medians in minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00250_results_2,trial_of_nutrients_lagtime_c00250_results_2_proc).
procedure(trial_of_nutrients_lagtime_c00250_results_2_proc).
has_proposition(trial_of_nutrients_lagtime_c00250_results_2_proc,'procedures/remove_dupl_medians_nut.R').
link('procedures/remove_dupl_medians_nut.R').
has_part(trial_of_nutrients_lagtime_c00250_results,trial_of_nutrients_lagtime_c00250_results_3).
has_representation(trial_of_nutrients_lagtime_c00250_results_3,'difference between trial_of_nutrients_lagtime_c00250_results_1 and trial_of_nutrients_lagtime_c00250_results_2').
text_representation('difference between trial_of_nutrients_lagtime_c00250_results_1 and trial_of_nutrients_lagtime_c00250_results_2').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_result).
result(study_on_rich_growthrate_result).
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_1).
has_representation(study_on_rich_growthrate_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_rich_growthrate_result_1,'results/wr_kr_growth_rate.csv').
link('results/wr_kr_growth_rate.csv').
has_proposition(study_on_rich_growthrate_result_1,study_on_rich_growthrate_result_1_proc).
procedure(study_on_rich_growthrate_result_1_proc).
has_proposition(study_on_rich_growthrate_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_2).
has_representation(study_on_rich_growthrate_result_2,'bar graph (histogram) plotting study_on_rich_growthrate_result_1').
text_representation('bar graph (histogram) plotting study_on_rich_growthrate_result_1').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate1.tiff').
link('results/kr_wr_growth_rate1.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate2.tiff').
link('results/kr_wr_growth_rate2.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/overlayed_growth_rate.tiff').
link('results/overlayed_growth_rate.tiff').
has_proposition(study_on_rich_growthrate_result_2,study_on_rich_growthrate_result_2_proc).
procedure(study_on_rich_growthrate_result_2_proc).
has_proposition(study_on_rich_growthrate_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_conclusion).
conclusion(study_on_rich_growthrate_conclusion).
has_representation(study_on_rich_growthrate_conclusion,'The knockouts have higher growth rate in rich than the wild type').
text_representation('The knockouts have higher growth rate in rich than the wild type').
has_proposition(study_on_rich_growthrate_conclusion,'obtain statistical mode of study_on_rich_growthrate_result_1').
procedure('obtain statistical mode of study_on_rich_growthrate_result_1').
text_representation('obtain statistical mode of study_on_rich_growthrate_result_1').
has_part(study_of_nutrients_lagtime,trial_of_nutrients_lagtime_c00627).
trial(trial_of_nutrients_lagtime_c00627).
has_agent(trial_of_nutrients_lagtime_c00627,c00627).
metabolite(c00627).
has_proposition(trial_of_nutrients_lagtime_c00627_1,trial_of_nutrients_lagtime_c00627_1_design).
design(trial_of_nutrients_lagtime_c00627_1_design).
has_proposition(trial_of_nutrients_lagtime_c00627_1_design,trial_of_nutrients_lagtime_c00627_1_factor).
factor(trial_of_nutrients_lagtime_c00627_1_factor).
has_representation(trial_of_nutrients_lagtime_c00627_1_factor,'presence or absence of c00627').
has_input(trial_of_nutrients_lagtime_c00627_1,trial_of_nutrients_lagtime_c00627_1_data).
data(trial_of_nutrients_lagtime_c00627_1_data).
has_part(trial_of_nutrients_lagtime_c00627_1_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00627_1_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00627_1_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00627_1,'mar07-trial1_expt001-plate002').
plate('mar07-trial1_expt001-plate002').
has_proposition(trial_of_nutrients_lagtime_c00627_1,trial_of_nutrients_lagtime_c00627_1_result).
result(trial_of_nutrients_lagtime_c00627_1_result).
has_part(trial_of_nutrients_lagtime_c00627_1_result,trial_of_nutrients_lagtime_c00627_1_result_1).
has_representation(trial_of_nutrients_lagtime_c00627_1_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00627_1_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00627_1_result_1,trial_of_nutrients_lagtime_c00627_1_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00627_1_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00627_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00627_1_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00627_1_result,trial_of_nutrients_lagtime_c00627_1_result_2).
has_representation(trial_of_nutrients_lagtime_c00627_1_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00627_1_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00627_1_result_2,trial_of_nutrients_lagtime_c00627_1_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00627_1_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00627_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00627_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00627,trial_of_nutrients_lagtime_c00627_results).
result(trial_of_nutrients_lagtime_c00627_results).
has_part(trial_of_nutrients_lagtime_c00627_results,trial_of_nutrients_lagtime_c00627_results_1).
has_representation(trial_of_nutrients_lagtime_c00627_results_1,'median of wildtype medians in minimal').
text_representation('median of wildtype medians in minimal').
has_proposition(trial_of_nutrients_lagtime_c00627_results_1,trial_of_nutrients_lagtime_c00627_results_1_proc).
procedure(trial_of_nutrients_lagtime_c00627_results_1_proc).
has_proposition(trial_of_nutrients_lagtime_c00627_results_1_proc,'procedures/remove_dupl_medians_nut.R').
link('procedures/remove_dupl_medians_nut.R').
has_part(trial_of_nutrients_lagtime_c00627_results,trial_of_nutrients_lagtime_c00627_results_2).
has_representation(trial_of_nutrients_lagtime_c00627_results_2,'median of wildtype medians in minimal with metabolite').
text_representation('median of wildtype medians in minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00627_results_2,trial_of_nutrients_lagtime_c00627_results_2_proc).
procedure(trial_of_nutrients_lagtime_c00627_results_2_proc).
has_proposition(trial_of_nutrients_lagtime_c00627_results_2_proc,'procedures/remove_dupl_medians_nut.R').
link('procedures/remove_dupl_medians_nut.R').
has_part(trial_of_nutrients_lagtime_c00627_results,trial_of_nutrients_lagtime_c00627_results_3).
has_representation(trial_of_nutrients_lagtime_c00627_results_3,'difference between trial_of_nutrients_lagtime_c00627_results_1 and trial_of_nutrients_lagtime_c00627_results_2').
text_representation('difference between trial_of_nutrients_lagtime_c00627_results_1 and trial_of_nutrients_lagtime_c00627_results_2').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_result).
result(study_on_rich_growthrate_result).
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_1).
has_representation(study_on_rich_growthrate_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_rich_growthrate_result_1,'results/wr_kr_growth_rate.csv').
link('results/wr_kr_growth_rate.csv').
has_proposition(study_on_rich_growthrate_result_1,study_on_rich_growthrate_result_1_proc).
procedure(study_on_rich_growthrate_result_1_proc).
has_proposition(study_on_rich_growthrate_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_2).
has_representation(study_on_rich_growthrate_result_2,'bar graph (histogram) plotting study_on_rich_growthrate_result_1').
text_representation('bar graph (histogram) plotting study_on_rich_growthrate_result_1').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate1.tiff').
link('results/kr_wr_growth_rate1.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate2.tiff').
link('results/kr_wr_growth_rate2.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/overlayed_growth_rate.tiff').
link('results/overlayed_growth_rate.tiff').
has_proposition(study_on_rich_growthrate_result_2,study_on_rich_growthrate_result_2_proc).
procedure(study_on_rich_growthrate_result_2_proc).
has_proposition(study_on_rich_growthrate_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_conclusion).
conclusion(study_on_rich_growthrate_conclusion).
has_representation(study_on_rich_growthrate_conclusion,'The knockouts have higher growth rate in rich than the wild type').
text_representation('The knockouts have higher growth rate in rich than the wild type').
has_proposition(study_on_rich_growthrate_conclusion,'obtain statistical mode of study_on_rich_growthrate_result_1').
procedure('obtain statistical mode of study_on_rich_growthrate_result_1').
text_representation('obtain statistical mode of study_on_rich_growthrate_result_1').
has_part(study_of_nutrients_lagtime,trial_of_nutrients_lagtime_c00415).
trial(trial_of_nutrients_lagtime_c00415).
has_agent(trial_of_nutrients_lagtime_c00415,c00415).
metabolite(c00415).
has_proposition(trial_of_nutrients_lagtime_c00415_1,trial_of_nutrients_lagtime_c00415_1_design).
design(trial_of_nutrients_lagtime_c00415_1_design).
has_proposition(trial_of_nutrients_lagtime_c00415_1_design,trial_of_nutrients_lagtime_c00415_1_factor).
factor(trial_of_nutrients_lagtime_c00415_1_factor).
has_representation(trial_of_nutrients_lagtime_c00415_1_factor,'presence or absence of c00415').
has_input(trial_of_nutrients_lagtime_c00415_1,trial_of_nutrients_lagtime_c00415_1_data).
data(trial_of_nutrients_lagtime_c00415_1_data).
has_part(trial_of_nutrients_lagtime_c00415_1_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00415_1_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00415_1_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00415_1,'feb07-single1_expt001-plate001').
plate('feb07-single1_expt001-plate001').
has_proposition(trial_of_nutrients_lagtime_c00415_1,trial_of_nutrients_lagtime_c00415_1_result).
result(trial_of_nutrients_lagtime_c00415_1_result).
has_part(trial_of_nutrients_lagtime_c00415_1_result,trial_of_nutrients_lagtime_c00415_1_result_1).
has_representation(trial_of_nutrients_lagtime_c00415_1_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00415_1_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00415_1_result_1,trial_of_nutrients_lagtime_c00415_1_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00415_1_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00415_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00415_1_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00415_1_result,trial_of_nutrients_lagtime_c00415_1_result_2).
has_representation(trial_of_nutrients_lagtime_c00415_1_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00415_1_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00415_1_result_2,trial_of_nutrients_lagtime_c00415_1_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00415_1_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00415_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00415_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00415_2,trial_of_nutrients_lagtime_c00415_2_design).
design(trial_of_nutrients_lagtime_c00415_2_design).
has_proposition(trial_of_nutrients_lagtime_c00415_2_design,trial_of_nutrients_lagtime_c00415_2_factor).
factor(trial_of_nutrients_lagtime_c00415_2_factor).
has_representation(trial_of_nutrients_lagtime_c00415_2_factor,'presence or absence of c00415').
has_input(trial_of_nutrients_lagtime_c00415_2,trial_of_nutrients_lagtime_c00415_2_data).
data(trial_of_nutrients_lagtime_c00415_2_data).
has_part(trial_of_nutrients_lagtime_c00415_2_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00415_2_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00415_2_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00415_2,'jan07-trial2_expt001-plate008').
plate('jan07-trial2_expt001-plate008').
has_proposition(trial_of_nutrients_lagtime_c00415_2,trial_of_nutrients_lagtime_c00415_2_result).
result(trial_of_nutrients_lagtime_c00415_2_result).
has_part(trial_of_nutrients_lagtime_c00415_2_result,trial_of_nutrients_lagtime_c00415_2_result_1).
has_representation(trial_of_nutrients_lagtime_c00415_2_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00415_2_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00415_2_result_1,trial_of_nutrients_lagtime_c00415_2_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00415_2_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00415_2_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00415_2_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00415_2_result,trial_of_nutrients_lagtime_c00415_2_result_2).
has_representation(trial_of_nutrients_lagtime_c00415_2_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00415_2_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00415_2_result_2,trial_of_nutrients_lagtime_c00415_2_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00415_2_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00415_2_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00415_2_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00415,trial_of_nutrients_lagtime_c00415_results).
result(trial_of_nutrients_lagtime_c00415_results).
has_part(trial_of_nutrients_lagtime_c00415_results,trial_of_nutrients_lagtime_c00415_results_1).
has_representation(trial_of_nutrients_lagtime_c00415_results_1,'median of wildtype medians in minimal').
text_representation('median of wildtype medians in minimal').
has_proposition(trial_of_nutrients_lagtime_c00415_results_1,trial_of_nutrients_lagtime_c00415_results_1_proc).
procedure(trial_of_nutrients_lagtime_c00415_results_1_proc).
has_proposition(trial_of_nutrients_lagtime_c00415_results_1_proc,'procedures/remove_dupl_medians_nut.R').
link('procedures/remove_dupl_medians_nut.R').
has_part(trial_of_nutrients_lagtime_c00415_results,trial_of_nutrients_lagtime_c00415_results_2).
has_representation(trial_of_nutrients_lagtime_c00415_results_2,'median of wildtype medians in minimal with metabolite').
text_representation('median of wildtype medians in minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00415_results_2,trial_of_nutrients_lagtime_c00415_results_2_proc).
procedure(trial_of_nutrients_lagtime_c00415_results_2_proc).
has_proposition(trial_of_nutrients_lagtime_c00415_results_2_proc,'procedures/remove_dupl_medians_nut.R').
link('procedures/remove_dupl_medians_nut.R').
has_part(trial_of_nutrients_lagtime_c00415_results,trial_of_nutrients_lagtime_c00415_results_3).
has_representation(trial_of_nutrients_lagtime_c00415_results_3,'difference between trial_of_nutrients_lagtime_c00415_results_1 and trial_of_nutrients_lagtime_c00415_results_2').
text_representation('difference between trial_of_nutrients_lagtime_c00415_results_1 and trial_of_nutrients_lagtime_c00415_results_2').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_result).
result(study_on_rich_growthrate_result).
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_1).
has_representation(study_on_rich_growthrate_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_rich_growthrate_result_1,'results/wr_kr_growth_rate.csv').
link('results/wr_kr_growth_rate.csv').
has_proposition(study_on_rich_growthrate_result_1,study_on_rich_growthrate_result_1_proc).
procedure(study_on_rich_growthrate_result_1_proc).
has_proposition(study_on_rich_growthrate_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_2).
has_representation(study_on_rich_growthrate_result_2,'bar graph (histogram) plotting study_on_rich_growthrate_result_1').
text_representation('bar graph (histogram) plotting study_on_rich_growthrate_result_1').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate1.tiff').
link('results/kr_wr_growth_rate1.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate2.tiff').
link('results/kr_wr_growth_rate2.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/overlayed_growth_rate.tiff').
link('results/overlayed_growth_rate.tiff').
has_proposition(study_on_rich_growthrate_result_2,study_on_rich_growthrate_result_2_proc).
procedure(study_on_rich_growthrate_result_2_proc).
has_proposition(study_on_rich_growthrate_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_conclusion).
conclusion(study_on_rich_growthrate_conclusion).
has_representation(study_on_rich_growthrate_conclusion,'The knockouts have higher growth rate in rich than the wild type').
text_representation('The knockouts have higher growth rate in rich than the wild type').
has_proposition(study_on_rich_growthrate_conclusion,'obtain statistical mode of study_on_rich_growthrate_result_1').
procedure('obtain statistical mode of study_on_rich_growthrate_result_1').
text_representation('obtain statistical mode of study_on_rich_growthrate_result_1').
has_part(study_of_nutrients_lagtime,trial_of_nutrients_lagtime_c00127).
trial(trial_of_nutrients_lagtime_c00127).
has_agent(trial_of_nutrients_lagtime_c00127,c00127).
metabolite(c00127).
has_proposition(trial_of_nutrients_lagtime_c00127_1,trial_of_nutrients_lagtime_c00127_1_design).
design(trial_of_nutrients_lagtime_c00127_1_design).
has_proposition(trial_of_nutrients_lagtime_c00127_1_design,trial_of_nutrients_lagtime_c00127_1_factor).
factor(trial_of_nutrients_lagtime_c00127_1_factor).
has_representation(trial_of_nutrients_lagtime_c00127_1_factor,'presence or absence of c00127').
has_input(trial_of_nutrients_lagtime_c00127_1,trial_of_nutrients_lagtime_c00127_1_data).
data(trial_of_nutrients_lagtime_c00127_1_data).
has_part(trial_of_nutrients_lagtime_c00127_1_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00127_1_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00127_1_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00127_1,'mar07-trial7_expt001-plate003').
plate('mar07-trial7_expt001-plate003').
has_proposition(trial_of_nutrients_lagtime_c00127_1,trial_of_nutrients_lagtime_c00127_1_result).
result(trial_of_nutrients_lagtime_c00127_1_result).
has_part(trial_of_nutrients_lagtime_c00127_1_result,trial_of_nutrients_lagtime_c00127_1_result_1).
has_representation(trial_of_nutrients_lagtime_c00127_1_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00127_1_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00127_1_result_1,trial_of_nutrients_lagtime_c00127_1_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00127_1_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00127_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00127_1_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00127_1_result,trial_of_nutrients_lagtime_c00127_1_result_2).
has_representation(trial_of_nutrients_lagtime_c00127_1_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00127_1_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00127_1_result_2,trial_of_nutrients_lagtime_c00127_1_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00127_1_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00127_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00127_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00127_2,trial_of_nutrients_lagtime_c00127_2_design).
design(trial_of_nutrients_lagtime_c00127_2_design).
has_proposition(trial_of_nutrients_lagtime_c00127_2_design,trial_of_nutrients_lagtime_c00127_2_factor).
factor(trial_of_nutrients_lagtime_c00127_2_factor).
has_representation(trial_of_nutrients_lagtime_c00127_2_factor,'presence or absence of c00127').
has_input(trial_of_nutrients_lagtime_c00127_2,trial_of_nutrients_lagtime_c00127_2_data).
data(trial_of_nutrients_lagtime_c00127_2_data).
has_part(trial_of_nutrients_lagtime_c00127_2_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00127_2_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00127_2_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00127_2,'mar07-trial7_expt001-plate004').
plate('mar07-trial7_expt001-plate004').
has_proposition(trial_of_nutrients_lagtime_c00127_2,trial_of_nutrients_lagtime_c00127_2_result).
result(trial_of_nutrients_lagtime_c00127_2_result).
has_part(trial_of_nutrients_lagtime_c00127_2_result,trial_of_nutrients_lagtime_c00127_2_result_1).
has_representation(trial_of_nutrients_lagtime_c00127_2_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00127_2_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00127_2_result_1,trial_of_nutrients_lagtime_c00127_2_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00127_2_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00127_2_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00127_2_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00127_2_result,trial_of_nutrients_lagtime_c00127_2_result_2).
has_representation(trial_of_nutrients_lagtime_c00127_2_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00127_2_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00127_2_result_2,trial_of_nutrients_lagtime_c00127_2_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00127_2_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00127_2_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00127_2_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00127,trial_of_nutrients_lagtime_c00127_results).
result(trial_of_nutrients_lagtime_c00127_results).
has_part(trial_of_nutrients_lagtime_c00127_results,trial_of_nutrients_lagtime_c00127_results_1).
has_representation(trial_of_nutrients_lagtime_c00127_results_1,'median of wildtype medians in minimal').
text_representation('median of wildtype medians in minimal').
has_proposition(trial_of_nutrients_lagtime_c00127_results_1,trial_of_nutrients_lagtime_c00127_results_1_proc).
procedure(trial_of_nutrients_lagtime_c00127_results_1_proc).
has_proposition(trial_of_nutrients_lagtime_c00127_results_1_proc,'procedures/remove_dupl_medians_nut.R').
link('procedures/remove_dupl_medians_nut.R').
has_part(trial_of_nutrients_lagtime_c00127_results,trial_of_nutrients_lagtime_c00127_results_2).
has_representation(trial_of_nutrients_lagtime_c00127_results_2,'median of wildtype medians in minimal with metabolite').
text_representation('median of wildtype medians in minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00127_results_2,trial_of_nutrients_lagtime_c00127_results_2_proc).
procedure(trial_of_nutrients_lagtime_c00127_results_2_proc).
has_proposition(trial_of_nutrients_lagtime_c00127_results_2_proc,'procedures/remove_dupl_medians_nut.R').
link('procedures/remove_dupl_medians_nut.R').
has_part(trial_of_nutrients_lagtime_c00127_results,trial_of_nutrients_lagtime_c00127_results_3).
has_representation(trial_of_nutrients_lagtime_c00127_results_3,'difference between trial_of_nutrients_lagtime_c00127_results_1 and trial_of_nutrients_lagtime_c00127_results_2').
text_representation('difference between trial_of_nutrients_lagtime_c00127_results_1 and trial_of_nutrients_lagtime_c00127_results_2').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_result).
result(study_on_rich_growthrate_result).
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_1).
has_representation(study_on_rich_growthrate_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_rich_growthrate_result_1,'results/wr_kr_growth_rate.csv').
link('results/wr_kr_growth_rate.csv').
has_proposition(study_on_rich_growthrate_result_1,study_on_rich_growthrate_result_1_proc).
procedure(study_on_rich_growthrate_result_1_proc).
has_proposition(study_on_rich_growthrate_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_2).
has_representation(study_on_rich_growthrate_result_2,'bar graph (histogram) plotting study_on_rich_growthrate_result_1').
text_representation('bar graph (histogram) plotting study_on_rich_growthrate_result_1').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate1.tiff').
link('results/kr_wr_growth_rate1.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate2.tiff').
link('results/kr_wr_growth_rate2.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/overlayed_growth_rate.tiff').
link('results/overlayed_growth_rate.tiff').
has_proposition(study_on_rich_growthrate_result_2,study_on_rich_growthrate_result_2_proc).
procedure(study_on_rich_growthrate_result_2_proc).
has_proposition(study_on_rich_growthrate_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_conclusion).
conclusion(study_on_rich_growthrate_conclusion).
has_representation(study_on_rich_growthrate_conclusion,'The knockouts have higher growth rate in rich than the wild type').
text_representation('The knockouts have higher growth rate in rich than the wild type').
has_proposition(study_on_rich_growthrate_conclusion,'obtain statistical mode of study_on_rich_growthrate_result_1').
procedure('obtain statistical mode of study_on_rich_growthrate_result_1').
text_representation('obtain statistical mode of study_on_rich_growthrate_result_1').
has_part(study_of_nutrients_lagtime,trial_of_nutrients_lagtime_c00534).
trial(trial_of_nutrients_lagtime_c00534).
has_agent(trial_of_nutrients_lagtime_c00534,c00534).
metabolite(c00534).
has_proposition(trial_of_nutrients_lagtime_c00534_1,trial_of_nutrients_lagtime_c00534_1_design).
design(trial_of_nutrients_lagtime_c00534_1_design).
has_proposition(trial_of_nutrients_lagtime_c00534_1_design,trial_of_nutrients_lagtime_c00534_1_factor).
factor(trial_of_nutrients_lagtime_c00534_1_factor).
has_representation(trial_of_nutrients_lagtime_c00534_1_factor,'presence or absence of c00534').
has_input(trial_of_nutrients_lagtime_c00534_1,trial_of_nutrients_lagtime_c00534_1_data).
data(trial_of_nutrients_lagtime_c00534_1_data).
has_part(trial_of_nutrients_lagtime_c00534_1_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00534_1_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00534_1_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00534_1,'mar07-trial6_expt001-plate003').
plate('mar07-trial6_expt001-plate003').
has_proposition(trial_of_nutrients_lagtime_c00534_1,trial_of_nutrients_lagtime_c00534_1_result).
result(trial_of_nutrients_lagtime_c00534_1_result).
has_part(trial_of_nutrients_lagtime_c00534_1_result,trial_of_nutrients_lagtime_c00534_1_result_1).
has_representation(trial_of_nutrients_lagtime_c00534_1_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00534_1_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00534_1_result_1,trial_of_nutrients_lagtime_c00534_1_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00534_1_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00534_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00534_1_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00534_1_result,trial_of_nutrients_lagtime_c00534_1_result_2).
has_representation(trial_of_nutrients_lagtime_c00534_1_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00534_1_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00534_1_result_2,trial_of_nutrients_lagtime_c00534_1_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00534_1_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00534_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00534_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00534_2,trial_of_nutrients_lagtime_c00534_2_design).
design(trial_of_nutrients_lagtime_c00534_2_design).
has_proposition(trial_of_nutrients_lagtime_c00534_2_design,trial_of_nutrients_lagtime_c00534_2_factor).
factor(trial_of_nutrients_lagtime_c00534_2_factor).
has_representation(trial_of_nutrients_lagtime_c00534_2_factor,'presence or absence of c00534').
has_input(trial_of_nutrients_lagtime_c00534_2,trial_of_nutrients_lagtime_c00534_2_data).
data(trial_of_nutrients_lagtime_c00534_2_data).
has_part(trial_of_nutrients_lagtime_c00534_2_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00534_2_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00534_2_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00534_2,'mar07-trial6_expt001-plate004').
plate('mar07-trial6_expt001-plate004').
has_proposition(trial_of_nutrients_lagtime_c00534_2,trial_of_nutrients_lagtime_c00534_2_result).
result(trial_of_nutrients_lagtime_c00534_2_result).
has_part(trial_of_nutrients_lagtime_c00534_2_result,trial_of_nutrients_lagtime_c00534_2_result_1).
has_representation(trial_of_nutrients_lagtime_c00534_2_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00534_2_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00534_2_result_1,trial_of_nutrients_lagtime_c00534_2_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00534_2_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00534_2_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00534_2_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00534_2_result,trial_of_nutrients_lagtime_c00534_2_result_2).
has_representation(trial_of_nutrients_lagtime_c00534_2_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00534_2_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00534_2_result_2,trial_of_nutrients_lagtime_c00534_2_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00534_2_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00534_2_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00534_2_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00534,trial_of_nutrients_lagtime_c00534_results).
result(trial_of_nutrients_lagtime_c00534_results).
has_part(trial_of_nutrients_lagtime_c00534_results,trial_of_nutrients_lagtime_c00534_results_1).
has_representation(trial_of_nutrients_lagtime_c00534_results_1,'median of wildtype medians in minimal').
text_representation('median of wildtype medians in minimal').
has_proposition(trial_of_nutrients_lagtime_c00534_results_1,trial_of_nutrients_lagtime_c00534_results_1_proc).
procedure(trial_of_nutrients_lagtime_c00534_results_1_proc).
has_proposition(trial_of_nutrients_lagtime_c00534_results_1_proc,'procedures/remove_dupl_medians_nut.R').
link('procedures/remove_dupl_medians_nut.R').
has_part(trial_of_nutrients_lagtime_c00534_results,trial_of_nutrients_lagtime_c00534_results_2).
has_representation(trial_of_nutrients_lagtime_c00534_results_2,'median of wildtype medians in minimal with metabolite').
text_representation('median of wildtype medians in minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00534_results_2,trial_of_nutrients_lagtime_c00534_results_2_proc).
procedure(trial_of_nutrients_lagtime_c00534_results_2_proc).
has_proposition(trial_of_nutrients_lagtime_c00534_results_2_proc,'procedures/remove_dupl_medians_nut.R').
link('procedures/remove_dupl_medians_nut.R').
has_part(trial_of_nutrients_lagtime_c00534_results,trial_of_nutrients_lagtime_c00534_results_3).
has_representation(trial_of_nutrients_lagtime_c00534_results_3,'difference between trial_of_nutrients_lagtime_c00534_results_1 and trial_of_nutrients_lagtime_c00534_results_2').
text_representation('difference between trial_of_nutrients_lagtime_c00534_results_1 and trial_of_nutrients_lagtime_c00534_results_2').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_result).
result(study_on_rich_growthrate_result).
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_1).
has_representation(study_on_rich_growthrate_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_rich_growthrate_result_1,'results/wr_kr_growth_rate.csv').
link('results/wr_kr_growth_rate.csv').
has_proposition(study_on_rich_growthrate_result_1,study_on_rich_growthrate_result_1_proc).
procedure(study_on_rich_growthrate_result_1_proc).
has_proposition(study_on_rich_growthrate_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_2).
has_representation(study_on_rich_growthrate_result_2,'bar graph (histogram) plotting study_on_rich_growthrate_result_1').
text_representation('bar graph (histogram) plotting study_on_rich_growthrate_result_1').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate1.tiff').
link('results/kr_wr_growth_rate1.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate2.tiff').
link('results/kr_wr_growth_rate2.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/overlayed_growth_rate.tiff').
link('results/overlayed_growth_rate.tiff').
has_proposition(study_on_rich_growthrate_result_2,study_on_rich_growthrate_result_2_proc).
procedure(study_on_rich_growthrate_result_2_proc).
has_proposition(study_on_rich_growthrate_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_conclusion).
conclusion(study_on_rich_growthrate_conclusion).
has_representation(study_on_rich_growthrate_conclusion,'The knockouts have higher growth rate in rich than the wild type').
text_representation('The knockouts have higher growth rate in rich than the wild type').
has_proposition(study_on_rich_growthrate_conclusion,'obtain statistical mode of study_on_rich_growthrate_result_1').
procedure('obtain statistical mode of study_on_rich_growthrate_result_1').
text_representation('obtain statistical mode of study_on_rich_growthrate_result_1').
has_part(study_of_nutrients_lagtime,trial_of_nutrients_lagtime_c00458).
trial(trial_of_nutrients_lagtime_c00458).
has_agent(trial_of_nutrients_lagtime_c00458,c00458).
metabolite(c00458).
has_proposition(trial_of_nutrients_lagtime_c00458_1,trial_of_nutrients_lagtime_c00458_1_design).
design(trial_of_nutrients_lagtime_c00458_1_design).
has_proposition(trial_of_nutrients_lagtime_c00458_1_design,trial_of_nutrients_lagtime_c00458_1_factor).
factor(trial_of_nutrients_lagtime_c00458_1_factor).
has_representation(trial_of_nutrients_lagtime_c00458_1_factor,'presence or absence of c00458').
has_input(trial_of_nutrients_lagtime_c00458_1,trial_of_nutrients_lagtime_c00458_1_data).
data(trial_of_nutrients_lagtime_c00458_1_data).
has_part(trial_of_nutrients_lagtime_c00458_1_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00458_1_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00458_1_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00458_1,'mar07-trial8_expt001-plate005').
plate('mar07-trial8_expt001-plate005').
has_proposition(trial_of_nutrients_lagtime_c00458_1,trial_of_nutrients_lagtime_c00458_1_result).
result(trial_of_nutrients_lagtime_c00458_1_result).
has_part(trial_of_nutrients_lagtime_c00458_1_result,trial_of_nutrients_lagtime_c00458_1_result_1).
has_representation(trial_of_nutrients_lagtime_c00458_1_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00458_1_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00458_1_result_1,trial_of_nutrients_lagtime_c00458_1_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00458_1_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00458_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00458_1_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00458_1_result,trial_of_nutrients_lagtime_c00458_1_result_2).
has_representation(trial_of_nutrients_lagtime_c00458_1_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00458_1_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00458_1_result_2,trial_of_nutrients_lagtime_c00458_1_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00458_1_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00458_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00458_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00458,trial_of_nutrients_lagtime_c00458_results).
result(trial_of_nutrients_lagtime_c00458_results).
has_part(trial_of_nutrients_lagtime_c00458_results,trial_of_nutrients_lagtime_c00458_results_1).
has_representation(trial_of_nutrients_lagtime_c00458_results_1,'median of wildtype medians in minimal').
text_representation('median of wildtype medians in minimal').
has_proposition(trial_of_nutrients_lagtime_c00458_results_1,trial_of_nutrients_lagtime_c00458_results_1_proc).
procedure(trial_of_nutrients_lagtime_c00458_results_1_proc).
has_proposition(trial_of_nutrients_lagtime_c00458_results_1_proc,'procedures/remove_dupl_medians_nut.R').
link('procedures/remove_dupl_medians_nut.R').
has_part(trial_of_nutrients_lagtime_c00458_results,trial_of_nutrients_lagtime_c00458_results_2).
has_representation(trial_of_nutrients_lagtime_c00458_results_2,'median of wildtype medians in minimal with metabolite').
text_representation('median of wildtype medians in minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00458_results_2,trial_of_nutrients_lagtime_c00458_results_2_proc).
procedure(trial_of_nutrients_lagtime_c00458_results_2_proc).
has_proposition(trial_of_nutrients_lagtime_c00458_results_2_proc,'procedures/remove_dupl_medians_nut.R').
link('procedures/remove_dupl_medians_nut.R').
has_part(trial_of_nutrients_lagtime_c00458_results,trial_of_nutrients_lagtime_c00458_results_3).
has_representation(trial_of_nutrients_lagtime_c00458_results_3,'difference between trial_of_nutrients_lagtime_c00458_results_1 and trial_of_nutrients_lagtime_c00458_results_2').
text_representation('difference between trial_of_nutrients_lagtime_c00458_results_1 and trial_of_nutrients_lagtime_c00458_results_2').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_result).
result(study_on_rich_growthrate_result).
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_1).
has_representation(study_on_rich_growthrate_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_rich_growthrate_result_1,'results/wr_kr_growth_rate.csv').
link('results/wr_kr_growth_rate.csv').
has_proposition(study_on_rich_growthrate_result_1,study_on_rich_growthrate_result_1_proc).
procedure(study_on_rich_growthrate_result_1_proc).
has_proposition(study_on_rich_growthrate_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_2).
has_representation(study_on_rich_growthrate_result_2,'bar graph (histogram) plotting study_on_rich_growthrate_result_1').
text_representation('bar graph (histogram) plotting study_on_rich_growthrate_result_1').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate1.tiff').
link('results/kr_wr_growth_rate1.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate2.tiff').
link('results/kr_wr_growth_rate2.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/overlayed_growth_rate.tiff').
link('results/overlayed_growth_rate.tiff').
has_proposition(study_on_rich_growthrate_result_2,study_on_rich_growthrate_result_2_proc).
procedure(study_on_rich_growthrate_result_2_proc).
has_proposition(study_on_rich_growthrate_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_conclusion).
conclusion(study_on_rich_growthrate_conclusion).
has_representation(study_on_rich_growthrate_conclusion,'The knockouts have higher growth rate in rich than the wild type').
text_representation('The knockouts have higher growth rate in rich than the wild type').
has_proposition(study_on_rich_growthrate_conclusion,'obtain statistical mode of study_on_rich_growthrate_result_1').
procedure('obtain statistical mode of study_on_rich_growthrate_result_1').
text_representation('obtain statistical mode of study_on_rich_growthrate_result_1').
has_part(study_of_nutrients_lagtime,trial_of_nutrients_lagtime_c00644).
trial(trial_of_nutrients_lagtime_c00644).
has_agent(trial_of_nutrients_lagtime_c00644,c00644).
metabolite(c00644).
has_proposition(trial_of_nutrients_lagtime_c00644_1,trial_of_nutrients_lagtime_c00644_1_design).
design(trial_of_nutrients_lagtime_c00644_1_design).
has_proposition(trial_of_nutrients_lagtime_c00644_1_design,trial_of_nutrients_lagtime_c00644_1_factor).
factor(trial_of_nutrients_lagtime_c00644_1_factor).
has_representation(trial_of_nutrients_lagtime_c00644_1_factor,'presence or absence of c00644').
has_input(trial_of_nutrients_lagtime_c00644_1,trial_of_nutrients_lagtime_c00644_1_data).
data(trial_of_nutrients_lagtime_c00644_1_data).
has_part(trial_of_nutrients_lagtime_c00644_1_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00644_1_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00644_1_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00644_1,'mar07-trial3_expt001-plate001').
plate('mar07-trial3_expt001-plate001').
has_proposition(trial_of_nutrients_lagtime_c00644_1,trial_of_nutrients_lagtime_c00644_1_result).
result(trial_of_nutrients_lagtime_c00644_1_result).
has_part(trial_of_nutrients_lagtime_c00644_1_result,trial_of_nutrients_lagtime_c00644_1_result_1).
has_representation(trial_of_nutrients_lagtime_c00644_1_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00644_1_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00644_1_result_1,trial_of_nutrients_lagtime_c00644_1_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00644_1_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00644_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00644_1_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00644_1_result,trial_of_nutrients_lagtime_c00644_1_result_2).
has_representation(trial_of_nutrients_lagtime_c00644_1_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00644_1_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00644_1_result_2,trial_of_nutrients_lagtime_c00644_1_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00644_1_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00644_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00644_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00644,trial_of_nutrients_lagtime_c00644_results).
result(trial_of_nutrients_lagtime_c00644_results).
has_part(trial_of_nutrients_lagtime_c00644_results,trial_of_nutrients_lagtime_c00644_results_1).
has_representation(trial_of_nutrients_lagtime_c00644_results_1,'median of wildtype medians in minimal').
text_representation('median of wildtype medians in minimal').
has_proposition(trial_of_nutrients_lagtime_c00644_results_1,trial_of_nutrients_lagtime_c00644_results_1_proc).
procedure(trial_of_nutrients_lagtime_c00644_results_1_proc).
has_proposition(trial_of_nutrients_lagtime_c00644_results_1_proc,'procedures/remove_dupl_medians_nut.R').
link('procedures/remove_dupl_medians_nut.R').
has_part(trial_of_nutrients_lagtime_c00644_results,trial_of_nutrients_lagtime_c00644_results_2).
has_representation(trial_of_nutrients_lagtime_c00644_results_2,'median of wildtype medians in minimal with metabolite').
text_representation('median of wildtype medians in minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00644_results_2,trial_of_nutrients_lagtime_c00644_results_2_proc).
procedure(trial_of_nutrients_lagtime_c00644_results_2_proc).
has_proposition(trial_of_nutrients_lagtime_c00644_results_2_proc,'procedures/remove_dupl_medians_nut.R').
link('procedures/remove_dupl_medians_nut.R').
has_part(trial_of_nutrients_lagtime_c00644_results,trial_of_nutrients_lagtime_c00644_results_3).
has_representation(trial_of_nutrients_lagtime_c00644_results_3,'difference between trial_of_nutrients_lagtime_c00644_results_1 and trial_of_nutrients_lagtime_c00644_results_2').
text_representation('difference between trial_of_nutrients_lagtime_c00644_results_1 and trial_of_nutrients_lagtime_c00644_results_2').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_result).
result(study_on_rich_growthrate_result).
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_1).
has_representation(study_on_rich_growthrate_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_rich_growthrate_result_1,'results/wr_kr_growth_rate.csv').
link('results/wr_kr_growth_rate.csv').
has_proposition(study_on_rich_growthrate_result_1,study_on_rich_growthrate_result_1_proc).
procedure(study_on_rich_growthrate_result_1_proc).
has_proposition(study_on_rich_growthrate_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_2).
has_representation(study_on_rich_growthrate_result_2,'bar graph (histogram) plotting study_on_rich_growthrate_result_1').
text_representation('bar graph (histogram) plotting study_on_rich_growthrate_result_1').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate1.tiff').
link('results/kr_wr_growth_rate1.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate2.tiff').
link('results/kr_wr_growth_rate2.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/overlayed_growth_rate.tiff').
link('results/overlayed_growth_rate.tiff').
has_proposition(study_on_rich_growthrate_result_2,study_on_rich_growthrate_result_2_proc).
procedure(study_on_rich_growthrate_result_2_proc).
has_proposition(study_on_rich_growthrate_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_conclusion).
conclusion(study_on_rich_growthrate_conclusion).
has_representation(study_on_rich_growthrate_conclusion,'The knockouts have higher growth rate in rich than the wild type').
text_representation('The knockouts have higher growth rate in rich than the wild type').
has_proposition(study_on_rich_growthrate_conclusion,'obtain statistical mode of study_on_rich_growthrate_result_1').
procedure('obtain statistical mode of study_on_rich_growthrate_result_1').
text_representation('obtain statistical mode of study_on_rich_growthrate_result_1').
has_part(study_of_nutrients_lagtime,trial_of_nutrients_lagtime_c00330).
trial(trial_of_nutrients_lagtime_c00330).
has_agent(trial_of_nutrients_lagtime_c00330,c00330).
metabolite(c00330).
has_proposition(trial_of_nutrients_lagtime_c00330_1,trial_of_nutrients_lagtime_c00330_1_design).
design(trial_of_nutrients_lagtime_c00330_1_design).
has_proposition(trial_of_nutrients_lagtime_c00330_1_design,trial_of_nutrients_lagtime_c00330_1_factor).
factor(trial_of_nutrients_lagtime_c00330_1_factor).
has_representation(trial_of_nutrients_lagtime_c00330_1_factor,'presence or absence of c00330').
has_input(trial_of_nutrients_lagtime_c00330_1,trial_of_nutrients_lagtime_c00330_1_data).
data(trial_of_nutrients_lagtime_c00330_1_data).
has_part(trial_of_nutrients_lagtime_c00330_1_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00330_1_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00330_1_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00330_1,'mar07-trial4_expt1-plate004').
plate('mar07-trial4_expt1-plate004').
has_proposition(trial_of_nutrients_lagtime_c00330_1,trial_of_nutrients_lagtime_c00330_1_result).
result(trial_of_nutrients_lagtime_c00330_1_result).
has_part(trial_of_nutrients_lagtime_c00330_1_result,trial_of_nutrients_lagtime_c00330_1_result_1).
has_representation(trial_of_nutrients_lagtime_c00330_1_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00330_1_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00330_1_result_1,trial_of_nutrients_lagtime_c00330_1_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00330_1_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00330_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00330_1_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00330_1_result,trial_of_nutrients_lagtime_c00330_1_result_2).
has_representation(trial_of_nutrients_lagtime_c00330_1_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00330_1_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00330_1_result_2,trial_of_nutrients_lagtime_c00330_1_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00330_1_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00330_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00330_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00330,trial_of_nutrients_lagtime_c00330_results).
result(trial_of_nutrients_lagtime_c00330_results).
has_part(trial_of_nutrients_lagtime_c00330_results,trial_of_nutrients_lagtime_c00330_results_1).
has_representation(trial_of_nutrients_lagtime_c00330_results_1,'median of wildtype medians in minimal').
text_representation('median of wildtype medians in minimal').
has_proposition(trial_of_nutrients_lagtime_c00330_results_1,trial_of_nutrients_lagtime_c00330_results_1_proc).
procedure(trial_of_nutrients_lagtime_c00330_results_1_proc).
has_proposition(trial_of_nutrients_lagtime_c00330_results_1_proc,'procedures/remove_dupl_medians_nut.R').
link('procedures/remove_dupl_medians_nut.R').
has_part(trial_of_nutrients_lagtime_c00330_results,trial_of_nutrients_lagtime_c00330_results_2).
has_representation(trial_of_nutrients_lagtime_c00330_results_2,'median of wildtype medians in minimal with metabolite').
text_representation('median of wildtype medians in minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00330_results_2,trial_of_nutrients_lagtime_c00330_results_2_proc).
procedure(trial_of_nutrients_lagtime_c00330_results_2_proc).
has_proposition(trial_of_nutrients_lagtime_c00330_results_2_proc,'procedures/remove_dupl_medians_nut.R').
link('procedures/remove_dupl_medians_nut.R').
has_part(trial_of_nutrients_lagtime_c00330_results,trial_of_nutrients_lagtime_c00330_results_3).
has_representation(trial_of_nutrients_lagtime_c00330_results_3,'difference between trial_of_nutrients_lagtime_c00330_results_1 and trial_of_nutrients_lagtime_c00330_results_2').
text_representation('difference between trial_of_nutrients_lagtime_c00330_results_1 and trial_of_nutrients_lagtime_c00330_results_2').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_result).
result(study_on_rich_growthrate_result).
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_1).
has_representation(study_on_rich_growthrate_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_rich_growthrate_result_1,'results/wr_kr_growth_rate.csv').
link('results/wr_kr_growth_rate.csv').
has_proposition(study_on_rich_growthrate_result_1,study_on_rich_growthrate_result_1_proc).
procedure(study_on_rich_growthrate_result_1_proc).
has_proposition(study_on_rich_growthrate_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_2).
has_representation(study_on_rich_growthrate_result_2,'bar graph (histogram) plotting study_on_rich_growthrate_result_1').
text_representation('bar graph (histogram) plotting study_on_rich_growthrate_result_1').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate1.tiff').
link('results/kr_wr_growth_rate1.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate2.tiff').
link('results/kr_wr_growth_rate2.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/overlayed_growth_rate.tiff').
link('results/overlayed_growth_rate.tiff').
has_proposition(study_on_rich_growthrate_result_2,study_on_rich_growthrate_result_2_proc).
procedure(study_on_rich_growthrate_result_2_proc).
has_proposition(study_on_rich_growthrate_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_conclusion).
conclusion(study_on_rich_growthrate_conclusion).
has_representation(study_on_rich_growthrate_conclusion,'The knockouts have higher growth rate in rich than the wild type').
text_representation('The knockouts have higher growth rate in rich than the wild type').
has_proposition(study_on_rich_growthrate_conclusion,'obtain statistical mode of study_on_rich_growthrate_result_1').
procedure('obtain statistical mode of study_on_rich_growthrate_result_1').
text_representation('obtain statistical mode of study_on_rich_growthrate_result_1').
has_part(study_of_nutrients_lagtime,trial_of_nutrients_lagtime_c00559).
trial(trial_of_nutrients_lagtime_c00559).
has_agent(trial_of_nutrients_lagtime_c00559,c00559).
metabolite(c00559).
has_proposition(trial_of_nutrients_lagtime_c00559_1,trial_of_nutrients_lagtime_c00559_1_design).
design(trial_of_nutrients_lagtime_c00559_1_design).
has_proposition(trial_of_nutrients_lagtime_c00559_1_design,trial_of_nutrients_lagtime_c00559_1_factor).
factor(trial_of_nutrients_lagtime_c00559_1_factor).
has_representation(trial_of_nutrients_lagtime_c00559_1_factor,'presence or absence of c00559').
has_input(trial_of_nutrients_lagtime_c00559_1,trial_of_nutrients_lagtime_c00559_1_data).
data(trial_of_nutrients_lagtime_c00559_1_data).
has_part(trial_of_nutrients_lagtime_c00559_1_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00559_1_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00559_1_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00559_1,'mar07-trial6_expt001-plate007').
plate('mar07-trial6_expt001-plate007').
has_proposition(trial_of_nutrients_lagtime_c00559_1,trial_of_nutrients_lagtime_c00559_1_result).
result(trial_of_nutrients_lagtime_c00559_1_result).
has_part(trial_of_nutrients_lagtime_c00559_1_result,trial_of_nutrients_lagtime_c00559_1_result_1).
has_representation(trial_of_nutrients_lagtime_c00559_1_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00559_1_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00559_1_result_1,trial_of_nutrients_lagtime_c00559_1_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00559_1_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00559_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00559_1_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00559_1_result,trial_of_nutrients_lagtime_c00559_1_result_2).
has_representation(trial_of_nutrients_lagtime_c00559_1_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00559_1_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00559_1_result_2,trial_of_nutrients_lagtime_c00559_1_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00559_1_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00559_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00559_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00559,trial_of_nutrients_lagtime_c00559_results).
result(trial_of_nutrients_lagtime_c00559_results).
has_part(trial_of_nutrients_lagtime_c00559_results,trial_of_nutrients_lagtime_c00559_results_1).
has_representation(trial_of_nutrients_lagtime_c00559_results_1,'median of wildtype medians in minimal').
text_representation('median of wildtype medians in minimal').
has_proposition(trial_of_nutrients_lagtime_c00559_results_1,trial_of_nutrients_lagtime_c00559_results_1_proc).
procedure(trial_of_nutrients_lagtime_c00559_results_1_proc).
has_proposition(trial_of_nutrients_lagtime_c00559_results_1_proc,'procedures/remove_dupl_medians_nut.R').
link('procedures/remove_dupl_medians_nut.R').
has_part(trial_of_nutrients_lagtime_c00559_results,trial_of_nutrients_lagtime_c00559_results_2).
has_representation(trial_of_nutrients_lagtime_c00559_results_2,'median of wildtype medians in minimal with metabolite').
text_representation('median of wildtype medians in minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00559_results_2,trial_of_nutrients_lagtime_c00559_results_2_proc).
procedure(trial_of_nutrients_lagtime_c00559_results_2_proc).
has_proposition(trial_of_nutrients_lagtime_c00559_results_2_proc,'procedures/remove_dupl_medians_nut.R').
link('procedures/remove_dupl_medians_nut.R').
has_part(trial_of_nutrients_lagtime_c00559_results,trial_of_nutrients_lagtime_c00559_results_3).
has_representation(trial_of_nutrients_lagtime_c00559_results_3,'difference between trial_of_nutrients_lagtime_c00559_results_1 and trial_of_nutrients_lagtime_c00559_results_2').
text_representation('difference between trial_of_nutrients_lagtime_c00559_results_1 and trial_of_nutrients_lagtime_c00559_results_2').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_result).
result(study_on_rich_growthrate_result).
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_1).
has_representation(study_on_rich_growthrate_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_rich_growthrate_result_1,'results/wr_kr_growth_rate.csv').
link('results/wr_kr_growth_rate.csv').
has_proposition(study_on_rich_growthrate_result_1,study_on_rich_growthrate_result_1_proc).
procedure(study_on_rich_growthrate_result_1_proc).
has_proposition(study_on_rich_growthrate_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_2).
has_representation(study_on_rich_growthrate_result_2,'bar graph (histogram) plotting study_on_rich_growthrate_result_1').
text_representation('bar graph (histogram) plotting study_on_rich_growthrate_result_1').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate1.tiff').
link('results/kr_wr_growth_rate1.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate2.tiff').
link('results/kr_wr_growth_rate2.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/overlayed_growth_rate.tiff').
link('results/overlayed_growth_rate.tiff').
has_proposition(study_on_rich_growthrate_result_2,study_on_rich_growthrate_result_2_proc).
procedure(study_on_rich_growthrate_result_2_proc).
has_proposition(study_on_rich_growthrate_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_conclusion).
conclusion(study_on_rich_growthrate_conclusion).
has_representation(study_on_rich_growthrate_conclusion,'The knockouts have higher growth rate in rich than the wild type').
text_representation('The knockouts have higher growth rate in rich than the wild type').
has_proposition(study_on_rich_growthrate_conclusion,'obtain statistical mode of study_on_rich_growthrate_result_1').
procedure('obtain statistical mode of study_on_rich_growthrate_result_1').
text_representation('obtain statistical mode of study_on_rich_growthrate_result_1').
has_part(study_of_nutrients_lagtime,trial_of_nutrients_lagtime_c00051).
trial(trial_of_nutrients_lagtime_c00051).
has_agent(trial_of_nutrients_lagtime_c00051,c00051).
metabolite(c00051).
has_proposition(trial_of_nutrients_lagtime_c00051_1,trial_of_nutrients_lagtime_c00051_1_design).
design(trial_of_nutrients_lagtime_c00051_1_design).
has_proposition(trial_of_nutrients_lagtime_c00051_1_design,trial_of_nutrients_lagtime_c00051_1_factor).
factor(trial_of_nutrients_lagtime_c00051_1_factor).
has_representation(trial_of_nutrients_lagtime_c00051_1_factor,'presence or absence of c00051').
has_input(trial_of_nutrients_lagtime_c00051_1,trial_of_nutrients_lagtime_c00051_1_data).
data(trial_of_nutrients_lagtime_c00051_1_data).
has_part(trial_of_nutrients_lagtime_c00051_1_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00051_1_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00051_1_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00051_1,'mar07-trial7_expt001-plate005').
plate('mar07-trial7_expt001-plate005').
has_proposition(trial_of_nutrients_lagtime_c00051_1,trial_of_nutrients_lagtime_c00051_1_result).
result(trial_of_nutrients_lagtime_c00051_1_result).
has_part(trial_of_nutrients_lagtime_c00051_1_result,trial_of_nutrients_lagtime_c00051_1_result_1).
has_representation(trial_of_nutrients_lagtime_c00051_1_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00051_1_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00051_1_result_1,trial_of_nutrients_lagtime_c00051_1_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00051_1_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00051_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00051_1_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00051_1_result,trial_of_nutrients_lagtime_c00051_1_result_2).
has_representation(trial_of_nutrients_lagtime_c00051_1_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00051_1_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00051_1_result_2,trial_of_nutrients_lagtime_c00051_1_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00051_1_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00051_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00051_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00051_2,trial_of_nutrients_lagtime_c00051_2_design).
design(trial_of_nutrients_lagtime_c00051_2_design).
has_proposition(trial_of_nutrients_lagtime_c00051_2_design,trial_of_nutrients_lagtime_c00051_2_factor).
factor(trial_of_nutrients_lagtime_c00051_2_factor).
has_representation(trial_of_nutrients_lagtime_c00051_2_factor,'presence or absence of c00051').
has_input(trial_of_nutrients_lagtime_c00051_2,trial_of_nutrients_lagtime_c00051_2_data).
data(trial_of_nutrients_lagtime_c00051_2_data).
has_part(trial_of_nutrients_lagtime_c00051_2_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00051_2_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00051_2_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00051_2,'mar07-trial7_expt001-plate006').
plate('mar07-trial7_expt001-plate006').
has_proposition(trial_of_nutrients_lagtime_c00051_2,trial_of_nutrients_lagtime_c00051_2_result).
result(trial_of_nutrients_lagtime_c00051_2_result).
has_part(trial_of_nutrients_lagtime_c00051_2_result,trial_of_nutrients_lagtime_c00051_2_result_1).
has_representation(trial_of_nutrients_lagtime_c00051_2_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00051_2_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00051_2_result_1,trial_of_nutrients_lagtime_c00051_2_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00051_2_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00051_2_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00051_2_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00051_2_result,trial_of_nutrients_lagtime_c00051_2_result_2).
has_representation(trial_of_nutrients_lagtime_c00051_2_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00051_2_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00051_2_result_2,trial_of_nutrients_lagtime_c00051_2_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00051_2_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00051_2_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00051_2_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00051,trial_of_nutrients_lagtime_c00051_results).
result(trial_of_nutrients_lagtime_c00051_results).
has_part(trial_of_nutrients_lagtime_c00051_results,trial_of_nutrients_lagtime_c00051_results_1).
has_representation(trial_of_nutrients_lagtime_c00051_results_1,'median of wildtype medians in minimal').
text_representation('median of wildtype medians in minimal').
has_proposition(trial_of_nutrients_lagtime_c00051_results_1,trial_of_nutrients_lagtime_c00051_results_1_proc).
procedure(trial_of_nutrients_lagtime_c00051_results_1_proc).
has_proposition(trial_of_nutrients_lagtime_c00051_results_1_proc,'procedures/remove_dupl_medians_nut.R').
link('procedures/remove_dupl_medians_nut.R').
has_part(trial_of_nutrients_lagtime_c00051_results,trial_of_nutrients_lagtime_c00051_results_2).
has_representation(trial_of_nutrients_lagtime_c00051_results_2,'median of wildtype medians in minimal with metabolite').
text_representation('median of wildtype medians in minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00051_results_2,trial_of_nutrients_lagtime_c00051_results_2_proc).
procedure(trial_of_nutrients_lagtime_c00051_results_2_proc).
has_proposition(trial_of_nutrients_lagtime_c00051_results_2_proc,'procedures/remove_dupl_medians_nut.R').
link('procedures/remove_dupl_medians_nut.R').
has_part(trial_of_nutrients_lagtime_c00051_results,trial_of_nutrients_lagtime_c00051_results_3).
has_representation(trial_of_nutrients_lagtime_c00051_results_3,'difference between trial_of_nutrients_lagtime_c00051_results_1 and trial_of_nutrients_lagtime_c00051_results_2').
text_representation('difference between trial_of_nutrients_lagtime_c00051_results_1 and trial_of_nutrients_lagtime_c00051_results_2').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_result).
result(study_on_rich_growthrate_result).
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_1).
has_representation(study_on_rich_growthrate_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_rich_growthrate_result_1,'results/wr_kr_growth_rate.csv').
link('results/wr_kr_growth_rate.csv').
has_proposition(study_on_rich_growthrate_result_1,study_on_rich_growthrate_result_1_proc).
procedure(study_on_rich_growthrate_result_1_proc).
has_proposition(study_on_rich_growthrate_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_2).
has_representation(study_on_rich_growthrate_result_2,'bar graph (histogram) plotting study_on_rich_growthrate_result_1').
text_representation('bar graph (histogram) plotting study_on_rich_growthrate_result_1').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate1.tiff').
link('results/kr_wr_growth_rate1.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate2.tiff').
link('results/kr_wr_growth_rate2.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/overlayed_growth_rate.tiff').
link('results/overlayed_growth_rate.tiff').
has_proposition(study_on_rich_growthrate_result_2,study_on_rich_growthrate_result_2_proc).
procedure(study_on_rich_growthrate_result_2_proc).
has_proposition(study_on_rich_growthrate_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_conclusion).
conclusion(study_on_rich_growthrate_conclusion).
has_representation(study_on_rich_growthrate_conclusion,'The knockouts have higher growth rate in rich than the wild type').
text_representation('The knockouts have higher growth rate in rich than the wild type').
has_proposition(study_on_rich_growthrate_conclusion,'obtain statistical mode of study_on_rich_growthrate_result_1').
procedure('obtain statistical mode of study_on_rich_growthrate_result_1').
text_representation('obtain statistical mode of study_on_rich_growthrate_result_1').
has_part(study_of_nutrients_lagtime,trial_of_nutrients_lagtime_c00314).
trial(trial_of_nutrients_lagtime_c00314).
has_agent(trial_of_nutrients_lagtime_c00314,c00314).
metabolite(c00314).
has_proposition(trial_of_nutrients_lagtime_c00314_1,trial_of_nutrients_lagtime_c00314_1_design).
design(trial_of_nutrients_lagtime_c00314_1_design).
has_proposition(trial_of_nutrients_lagtime_c00314_1_design,trial_of_nutrients_lagtime_c00314_1_factor).
factor(trial_of_nutrients_lagtime_c00314_1_factor).
has_representation(trial_of_nutrients_lagtime_c00314_1_factor,'presence or absence of c00314').
has_input(trial_of_nutrients_lagtime_c00314_1,trial_of_nutrients_lagtime_c00314_1_data).
data(trial_of_nutrients_lagtime_c00314_1_data).
has_part(trial_of_nutrients_lagtime_c00314_1_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00314_1_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00314_1_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00314_1,'mar07-trial2_expt001-plate004').
plate('mar07-trial2_expt001-plate004').
has_proposition(trial_of_nutrients_lagtime_c00314_1,trial_of_nutrients_lagtime_c00314_1_result).
result(trial_of_nutrients_lagtime_c00314_1_result).
has_part(trial_of_nutrients_lagtime_c00314_1_result,trial_of_nutrients_lagtime_c00314_1_result_1).
has_representation(trial_of_nutrients_lagtime_c00314_1_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00314_1_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00314_1_result_1,trial_of_nutrients_lagtime_c00314_1_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00314_1_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00314_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00314_1_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00314_1_result,trial_of_nutrients_lagtime_c00314_1_result_2).
has_representation(trial_of_nutrients_lagtime_c00314_1_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00314_1_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00314_1_result_2,trial_of_nutrients_lagtime_c00314_1_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00314_1_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00314_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00314_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00314_2,trial_of_nutrients_lagtime_c00314_2_design).
design(trial_of_nutrients_lagtime_c00314_2_design).
has_proposition(trial_of_nutrients_lagtime_c00314_2_design,trial_of_nutrients_lagtime_c00314_2_factor).
factor(trial_of_nutrients_lagtime_c00314_2_factor).
has_representation(trial_of_nutrients_lagtime_c00314_2_factor,'presence or absence of c00314').
has_input(trial_of_nutrients_lagtime_c00314_2,trial_of_nutrients_lagtime_c00314_2_data).
data(trial_of_nutrients_lagtime_c00314_2_data).
has_part(trial_of_nutrients_lagtime_c00314_2_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00314_2_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00314_2_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00314_2,'mar07-trial5_expt001-plate001').
plate('mar07-trial5_expt001-plate001').
has_proposition(trial_of_nutrients_lagtime_c00314_2,trial_of_nutrients_lagtime_c00314_2_result).
result(trial_of_nutrients_lagtime_c00314_2_result).
has_part(trial_of_nutrients_lagtime_c00314_2_result,trial_of_nutrients_lagtime_c00314_2_result_1).
has_representation(trial_of_nutrients_lagtime_c00314_2_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00314_2_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00314_2_result_1,trial_of_nutrients_lagtime_c00314_2_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00314_2_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00314_2_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00314_2_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00314_2_result,trial_of_nutrients_lagtime_c00314_2_result_2).
has_representation(trial_of_nutrients_lagtime_c00314_2_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00314_2_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00314_2_result_2,trial_of_nutrients_lagtime_c00314_2_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00314_2_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00314_2_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00314_2_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00314,trial_of_nutrients_lagtime_c00314_results).
result(trial_of_nutrients_lagtime_c00314_results).
has_part(trial_of_nutrients_lagtime_c00314_results,trial_of_nutrients_lagtime_c00314_results_1).
has_representation(trial_of_nutrients_lagtime_c00314_results_1,'median of wildtype medians in minimal').
text_representation('median of wildtype medians in minimal').
has_proposition(trial_of_nutrients_lagtime_c00314_results_1,trial_of_nutrients_lagtime_c00314_results_1_proc).
procedure(trial_of_nutrients_lagtime_c00314_results_1_proc).
has_proposition(trial_of_nutrients_lagtime_c00314_results_1_proc,'procedures/remove_dupl_medians_nut.R').
link('procedures/remove_dupl_medians_nut.R').
has_part(trial_of_nutrients_lagtime_c00314_results,trial_of_nutrients_lagtime_c00314_results_2).
has_representation(trial_of_nutrients_lagtime_c00314_results_2,'median of wildtype medians in minimal with metabolite').
text_representation('median of wildtype medians in minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00314_results_2,trial_of_nutrients_lagtime_c00314_results_2_proc).
procedure(trial_of_nutrients_lagtime_c00314_results_2_proc).
has_proposition(trial_of_nutrients_lagtime_c00314_results_2_proc,'procedures/remove_dupl_medians_nut.R').
link('procedures/remove_dupl_medians_nut.R').
has_part(trial_of_nutrients_lagtime_c00314_results,trial_of_nutrients_lagtime_c00314_results_3).
has_representation(trial_of_nutrients_lagtime_c00314_results_3,'difference between trial_of_nutrients_lagtime_c00314_results_1 and trial_of_nutrients_lagtime_c00314_results_2').
text_representation('difference between trial_of_nutrients_lagtime_c00314_results_1 and trial_of_nutrients_lagtime_c00314_results_2').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_result).
result(study_on_rich_growthrate_result).
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_1).
has_representation(study_on_rich_growthrate_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_rich_growthrate_result_1,'results/wr_kr_growth_rate.csv').
link('results/wr_kr_growth_rate.csv').
has_proposition(study_on_rich_growthrate_result_1,study_on_rich_growthrate_result_1_proc).
procedure(study_on_rich_growthrate_result_1_proc).
has_proposition(study_on_rich_growthrate_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_2).
has_representation(study_on_rich_growthrate_result_2,'bar graph (histogram) plotting study_on_rich_growthrate_result_1').
text_representation('bar graph (histogram) plotting study_on_rich_growthrate_result_1').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate1.tiff').
link('results/kr_wr_growth_rate1.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate2.tiff').
link('results/kr_wr_growth_rate2.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/overlayed_growth_rate.tiff').
link('results/overlayed_growth_rate.tiff').
has_proposition(study_on_rich_growthrate_result_2,study_on_rich_growthrate_result_2_proc).
procedure(study_on_rich_growthrate_result_2_proc).
has_proposition(study_on_rich_growthrate_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_conclusion).
conclusion(study_on_rich_growthrate_conclusion).
has_representation(study_on_rich_growthrate_conclusion,'The knockouts have higher growth rate in rich than the wild type').
text_representation('The knockouts have higher growth rate in rich than the wild type').
has_proposition(study_on_rich_growthrate_conclusion,'obtain statistical mode of study_on_rich_growthrate_result_1').
procedure('obtain statistical mode of study_on_rich_growthrate_result_1').
text_representation('obtain statistical mode of study_on_rich_growthrate_result_1').
has_part(study_of_nutrients_lagtime,trial_of_nutrients_lagtime_c00555).
trial(trial_of_nutrients_lagtime_c00555).
has_agent(trial_of_nutrients_lagtime_c00555,c00555).
metabolite(c00555).
has_proposition(trial_of_nutrients_lagtime_c00555_1,trial_of_nutrients_lagtime_c00555_1_design).
design(trial_of_nutrients_lagtime_c00555_1_design).
has_proposition(trial_of_nutrients_lagtime_c00555_1_design,trial_of_nutrients_lagtime_c00555_1_factor).
factor(trial_of_nutrients_lagtime_c00555_1_factor).
has_representation(trial_of_nutrients_lagtime_c00555_1_factor,'presence or absence of c00555').
has_input(trial_of_nutrients_lagtime_c00555_1,trial_of_nutrients_lagtime_c00555_1_data).
data(trial_of_nutrients_lagtime_c00555_1_data).
has_part(trial_of_nutrients_lagtime_c00555_1_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00555_1_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00555_1_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00555_1,'mar07-trial5_expt001-plate006').
plate('mar07-trial5_expt001-plate006').
has_proposition(trial_of_nutrients_lagtime_c00555_1,trial_of_nutrients_lagtime_c00555_1_result).
result(trial_of_nutrients_lagtime_c00555_1_result).
has_part(trial_of_nutrients_lagtime_c00555_1_result,trial_of_nutrients_lagtime_c00555_1_result_1).
has_representation(trial_of_nutrients_lagtime_c00555_1_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00555_1_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00555_1_result_1,trial_of_nutrients_lagtime_c00555_1_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00555_1_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00555_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00555_1_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00555_1_result,trial_of_nutrients_lagtime_c00555_1_result_2).
has_representation(trial_of_nutrients_lagtime_c00555_1_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00555_1_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00555_1_result_2,trial_of_nutrients_lagtime_c00555_1_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00555_1_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00555_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00555_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00555,trial_of_nutrients_lagtime_c00555_results).
result(trial_of_nutrients_lagtime_c00555_results).
has_part(trial_of_nutrients_lagtime_c00555_results,trial_of_nutrients_lagtime_c00555_results_1).
has_representation(trial_of_nutrients_lagtime_c00555_results_1,'median of wildtype medians in minimal').
text_representation('median of wildtype medians in minimal').
has_proposition(trial_of_nutrients_lagtime_c00555_results_1,trial_of_nutrients_lagtime_c00555_results_1_proc).
procedure(trial_of_nutrients_lagtime_c00555_results_1_proc).
has_proposition(trial_of_nutrients_lagtime_c00555_results_1_proc,'procedures/remove_dupl_medians_nut.R').
link('procedures/remove_dupl_medians_nut.R').
has_part(trial_of_nutrients_lagtime_c00555_results,trial_of_nutrients_lagtime_c00555_results_2).
has_representation(trial_of_nutrients_lagtime_c00555_results_2,'median of wildtype medians in minimal with metabolite').
text_representation('median of wildtype medians in minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00555_results_2,trial_of_nutrients_lagtime_c00555_results_2_proc).
procedure(trial_of_nutrients_lagtime_c00555_results_2_proc).
has_proposition(trial_of_nutrients_lagtime_c00555_results_2_proc,'procedures/remove_dupl_medians_nut.R').
link('procedures/remove_dupl_medians_nut.R').
has_part(trial_of_nutrients_lagtime_c00555_results,trial_of_nutrients_lagtime_c00555_results_3).
has_representation(trial_of_nutrients_lagtime_c00555_results_3,'difference between trial_of_nutrients_lagtime_c00555_results_1 and trial_of_nutrients_lagtime_c00555_results_2').
text_representation('difference between trial_of_nutrients_lagtime_c00555_results_1 and trial_of_nutrients_lagtime_c00555_results_2').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_result).
result(study_on_rich_growthrate_result).
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_1).
has_representation(study_on_rich_growthrate_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_rich_growthrate_result_1,'results/wr_kr_growth_rate.csv').
link('results/wr_kr_growth_rate.csv').
has_proposition(study_on_rich_growthrate_result_1,study_on_rich_growthrate_result_1_proc).
procedure(study_on_rich_growthrate_result_1_proc).
has_proposition(study_on_rich_growthrate_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_2).
has_representation(study_on_rich_growthrate_result_2,'bar graph (histogram) plotting study_on_rich_growthrate_result_1').
text_representation('bar graph (histogram) plotting study_on_rich_growthrate_result_1').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate1.tiff').
link('results/kr_wr_growth_rate1.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate2.tiff').
link('results/kr_wr_growth_rate2.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/overlayed_growth_rate.tiff').
link('results/overlayed_growth_rate.tiff').
has_proposition(study_on_rich_growthrate_result_2,study_on_rich_growthrate_result_2_proc).
procedure(study_on_rich_growthrate_result_2_proc).
has_proposition(study_on_rich_growthrate_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_conclusion).
conclusion(study_on_rich_growthrate_conclusion).
has_representation(study_on_rich_growthrate_conclusion,'The knockouts have higher growth rate in rich than the wild type').
text_representation('The knockouts have higher growth rate in rich than the wild type').
has_proposition(study_on_rich_growthrate_conclusion,'obtain statistical mode of study_on_rich_growthrate_result_1').
procedure('obtain statistical mode of study_on_rich_growthrate_result_1').
text_representation('obtain statistical mode of study_on_rich_growthrate_result_1').
has_part(study_of_nutrients_lagtime,trial_of_nutrients_lagtime_c01203).
trial(trial_of_nutrients_lagtime_c01203).
has_agent(trial_of_nutrients_lagtime_c01203,c01203).
metabolite(c01203).
has_proposition(trial_of_nutrients_lagtime_c01203_1,trial_of_nutrients_lagtime_c01203_1_design).
design(trial_of_nutrients_lagtime_c01203_1_design).
has_proposition(trial_of_nutrients_lagtime_c01203_1_design,trial_of_nutrients_lagtime_c01203_1_factor).
factor(trial_of_nutrients_lagtime_c01203_1_factor).
has_representation(trial_of_nutrients_lagtime_c01203_1_factor,'presence or absence of c01203').
has_input(trial_of_nutrients_lagtime_c01203_1,trial_of_nutrients_lagtime_c01203_1_data).
data(trial_of_nutrients_lagtime_c01203_1_data).
has_part(trial_of_nutrients_lagtime_c01203_1_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c01203_1_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c01203_1_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c01203_1,'mar07-trial8_expt001-plate002').
plate('mar07-trial8_expt001-plate002').
has_proposition(trial_of_nutrients_lagtime_c01203_1,trial_of_nutrients_lagtime_c01203_1_result).
result(trial_of_nutrients_lagtime_c01203_1_result).
has_part(trial_of_nutrients_lagtime_c01203_1_result,trial_of_nutrients_lagtime_c01203_1_result_1).
has_representation(trial_of_nutrients_lagtime_c01203_1_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c01203_1_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c01203_1_result_1,trial_of_nutrients_lagtime_c01203_1_result_1_proc).
procedure(trial_of_nutrients_lagtime_c01203_1_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c01203_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c01203_1_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c01203_1_result,trial_of_nutrients_lagtime_c01203_1_result_2).
has_representation(trial_of_nutrients_lagtime_c01203_1_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c01203_1_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c01203_1_result_2,trial_of_nutrients_lagtime_c01203_1_result_2_proc).
procedure(trial_of_nutrients_lagtime_c01203_1_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c01203_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c01203_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c01203,trial_of_nutrients_lagtime_c01203_results).
result(trial_of_nutrients_lagtime_c01203_results).
has_part(trial_of_nutrients_lagtime_c01203_results,trial_of_nutrients_lagtime_c01203_results_1).
has_representation(trial_of_nutrients_lagtime_c01203_results_1,'median of wildtype medians in minimal').
text_representation('median of wildtype medians in minimal').
has_proposition(trial_of_nutrients_lagtime_c01203_results_1,trial_of_nutrients_lagtime_c01203_results_1_proc).
procedure(trial_of_nutrients_lagtime_c01203_results_1_proc).
has_proposition(trial_of_nutrients_lagtime_c01203_results_1_proc,'procedures/remove_dupl_medians_nut.R').
link('procedures/remove_dupl_medians_nut.R').
has_part(trial_of_nutrients_lagtime_c01203_results,trial_of_nutrients_lagtime_c01203_results_2).
has_representation(trial_of_nutrients_lagtime_c01203_results_2,'median of wildtype medians in minimal with metabolite').
text_representation('median of wildtype medians in minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c01203_results_2,trial_of_nutrients_lagtime_c01203_results_2_proc).
procedure(trial_of_nutrients_lagtime_c01203_results_2_proc).
has_proposition(trial_of_nutrients_lagtime_c01203_results_2_proc,'procedures/remove_dupl_medians_nut.R').
link('procedures/remove_dupl_medians_nut.R').
has_part(trial_of_nutrients_lagtime_c01203_results,trial_of_nutrients_lagtime_c01203_results_3).
has_representation(trial_of_nutrients_lagtime_c01203_results_3,'difference between trial_of_nutrients_lagtime_c01203_results_1 and trial_of_nutrients_lagtime_c01203_results_2').
text_representation('difference between trial_of_nutrients_lagtime_c01203_results_1 and trial_of_nutrients_lagtime_c01203_results_2').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_result).
result(study_on_rich_growthrate_result).
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_1).
has_representation(study_on_rich_growthrate_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_rich_growthrate_result_1,'results/wr_kr_growth_rate.csv').
link('results/wr_kr_growth_rate.csv').
has_proposition(study_on_rich_growthrate_result_1,study_on_rich_growthrate_result_1_proc).
procedure(study_on_rich_growthrate_result_1_proc).
has_proposition(study_on_rich_growthrate_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_2).
has_representation(study_on_rich_growthrate_result_2,'bar graph (histogram) plotting study_on_rich_growthrate_result_1').
text_representation('bar graph (histogram) plotting study_on_rich_growthrate_result_1').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate1.tiff').
link('results/kr_wr_growth_rate1.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate2.tiff').
link('results/kr_wr_growth_rate2.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/overlayed_growth_rate.tiff').
link('results/overlayed_growth_rate.tiff').
has_proposition(study_on_rich_growthrate_result_2,study_on_rich_growthrate_result_2_proc).
procedure(study_on_rich_growthrate_result_2_proc).
has_proposition(study_on_rich_growthrate_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_conclusion).
conclusion(study_on_rich_growthrate_conclusion).
has_representation(study_on_rich_growthrate_conclusion,'The knockouts have higher growth rate in rich than the wild type').
text_representation('The knockouts have higher growth rate in rich than the wild type').
has_proposition(study_on_rich_growthrate_conclusion,'obtain statistical mode of study_on_rich_growthrate_result_1').
procedure('obtain statistical mode of study_on_rich_growthrate_result_1').
text_representation('obtain statistical mode of study_on_rich_growthrate_result_1').
has_part(study_of_nutrients_lagtime,trial_of_nutrients_lagtime_c00214).
trial(trial_of_nutrients_lagtime_c00214).
has_agent(trial_of_nutrients_lagtime_c00214,c00214).
metabolite(c00214).
has_proposition(trial_of_nutrients_lagtime_c00214_1,trial_of_nutrients_lagtime_c00214_1_design).
design(trial_of_nutrients_lagtime_c00214_1_design).
has_proposition(trial_of_nutrients_lagtime_c00214_1_design,trial_of_nutrients_lagtime_c00214_1_factor).
factor(trial_of_nutrients_lagtime_c00214_1_factor).
has_representation(trial_of_nutrients_lagtime_c00214_1_factor,'presence or absence of c00214').
has_input(trial_of_nutrients_lagtime_c00214_1,trial_of_nutrients_lagtime_c00214_1_data).
data(trial_of_nutrients_lagtime_c00214_1_data).
has_part(trial_of_nutrients_lagtime_c00214_1_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00214_1_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00214_1_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00214_1,'jan07-single_expt001-plate001').
plate('jan07-single_expt001-plate001').
has_proposition(trial_of_nutrients_lagtime_c00214_1,trial_of_nutrients_lagtime_c00214_1_result).
result(trial_of_nutrients_lagtime_c00214_1_result).
has_part(trial_of_nutrients_lagtime_c00214_1_result,trial_of_nutrients_lagtime_c00214_1_result_1).
has_representation(trial_of_nutrients_lagtime_c00214_1_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00214_1_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00214_1_result_1,trial_of_nutrients_lagtime_c00214_1_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00214_1_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00214_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00214_1_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00214_1_result,trial_of_nutrients_lagtime_c00214_1_result_2).
has_representation(trial_of_nutrients_lagtime_c00214_1_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00214_1_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00214_1_result_2,trial_of_nutrients_lagtime_c00214_1_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00214_1_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00214_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00214_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00214_2,trial_of_nutrients_lagtime_c00214_2_design).
design(trial_of_nutrients_lagtime_c00214_2_design).
has_proposition(trial_of_nutrients_lagtime_c00214_2_design,trial_of_nutrients_lagtime_c00214_2_factor).
factor(trial_of_nutrients_lagtime_c00214_2_factor).
has_representation(trial_of_nutrients_lagtime_c00214_2_factor,'presence or absence of c00214').
has_input(trial_of_nutrients_lagtime_c00214_2,trial_of_nutrients_lagtime_c00214_2_data).
data(trial_of_nutrients_lagtime_c00214_2_data).
has_part(trial_of_nutrients_lagtime_c00214_2_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00214_2_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00214_2_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00214_2,'jan07-single2_expt001-plate001').
plate('jan07-single2_expt001-plate001').
has_proposition(trial_of_nutrients_lagtime_c00214_2,trial_of_nutrients_lagtime_c00214_2_result).
result(trial_of_nutrients_lagtime_c00214_2_result).
has_part(trial_of_nutrients_lagtime_c00214_2_result,trial_of_nutrients_lagtime_c00214_2_result_1).
has_representation(trial_of_nutrients_lagtime_c00214_2_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00214_2_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00214_2_result_1,trial_of_nutrients_lagtime_c00214_2_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00214_2_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00214_2_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00214_2_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00214_2_result,trial_of_nutrients_lagtime_c00214_2_result_2).
has_representation(trial_of_nutrients_lagtime_c00214_2_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00214_2_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00214_2_result_2,trial_of_nutrients_lagtime_c00214_2_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00214_2_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00214_2_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00214_2_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00214,trial_of_nutrients_lagtime_c00214_results).
result(trial_of_nutrients_lagtime_c00214_results).
has_part(trial_of_nutrients_lagtime_c00214_results,trial_of_nutrients_lagtime_c00214_results_1).
has_representation(trial_of_nutrients_lagtime_c00214_results_1,'median of wildtype medians in minimal').
text_representation('median of wildtype medians in minimal').
has_proposition(trial_of_nutrients_lagtime_c00214_results_1,trial_of_nutrients_lagtime_c00214_results_1_proc).
procedure(trial_of_nutrients_lagtime_c00214_results_1_proc).
has_proposition(trial_of_nutrients_lagtime_c00214_results_1_proc,'procedures/remove_dupl_medians_nut.R').
link('procedures/remove_dupl_medians_nut.R').
has_part(trial_of_nutrients_lagtime_c00214_results,trial_of_nutrients_lagtime_c00214_results_2).
has_representation(trial_of_nutrients_lagtime_c00214_results_2,'median of wildtype medians in minimal with metabolite').
text_representation('median of wildtype medians in minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00214_results_2,trial_of_nutrients_lagtime_c00214_results_2_proc).
procedure(trial_of_nutrients_lagtime_c00214_results_2_proc).
has_proposition(trial_of_nutrients_lagtime_c00214_results_2_proc,'procedures/remove_dupl_medians_nut.R').
link('procedures/remove_dupl_medians_nut.R').
has_part(trial_of_nutrients_lagtime_c00214_results,trial_of_nutrients_lagtime_c00214_results_3).
has_representation(trial_of_nutrients_lagtime_c00214_results_3,'difference between trial_of_nutrients_lagtime_c00214_results_1 and trial_of_nutrients_lagtime_c00214_results_2').
text_representation('difference between trial_of_nutrients_lagtime_c00214_results_1 and trial_of_nutrients_lagtime_c00214_results_2').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_result).
result(study_on_rich_growthrate_result).
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_1).
has_representation(study_on_rich_growthrate_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_rich_growthrate_result_1,'results/wr_kr_growth_rate.csv').
link('results/wr_kr_growth_rate.csv').
has_proposition(study_on_rich_growthrate_result_1,study_on_rich_growthrate_result_1_proc).
procedure(study_on_rich_growthrate_result_1_proc).
has_proposition(study_on_rich_growthrate_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_2).
has_representation(study_on_rich_growthrate_result_2,'bar graph (histogram) plotting study_on_rich_growthrate_result_1').
text_representation('bar graph (histogram) plotting study_on_rich_growthrate_result_1').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate1.tiff').
link('results/kr_wr_growth_rate1.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate2.tiff').
link('results/kr_wr_growth_rate2.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/overlayed_growth_rate.tiff').
link('results/overlayed_growth_rate.tiff').
has_proposition(study_on_rich_growthrate_result_2,study_on_rich_growthrate_result_2_proc).
procedure(study_on_rich_growthrate_result_2_proc).
has_proposition(study_on_rich_growthrate_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_conclusion).
conclusion(study_on_rich_growthrate_conclusion).
has_representation(study_on_rich_growthrate_conclusion,'The knockouts have higher growth rate in rich than the wild type').
text_representation('The knockouts have higher growth rate in rich than the wild type').
has_proposition(study_on_rich_growthrate_conclusion,'obtain statistical mode of study_on_rich_growthrate_result_1').
procedure('obtain statistical mode of study_on_rich_growthrate_result_1').
text_representation('obtain statistical mode of study_on_rich_growthrate_result_1').
has_part(study_of_nutrients_lagtime,trial_of_nutrients_lagtime_c00178).
trial(trial_of_nutrients_lagtime_c00178).
has_agent(trial_of_nutrients_lagtime_c00178,c00178).
metabolite(c00178).
has_proposition(trial_of_nutrients_lagtime_c00178_1,trial_of_nutrients_lagtime_c00178_1_design).
design(trial_of_nutrients_lagtime_c00178_1_design).
has_proposition(trial_of_nutrients_lagtime_c00178_1_design,trial_of_nutrients_lagtime_c00178_1_factor).
factor(trial_of_nutrients_lagtime_c00178_1_factor).
has_representation(trial_of_nutrients_lagtime_c00178_1_factor,'presence or absence of c00178').
has_input(trial_of_nutrients_lagtime_c00178_1,trial_of_nutrients_lagtime_c00178_1_data).
data(trial_of_nutrients_lagtime_c00178_1_data).
has_part(trial_of_nutrients_lagtime_c00178_1_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00178_1_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00178_1_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00178_1,'jan07-trial1_expt001-plate006').
plate('jan07-trial1_expt001-plate006').
has_proposition(trial_of_nutrients_lagtime_c00178_1,trial_of_nutrients_lagtime_c00178_1_result).
result(trial_of_nutrients_lagtime_c00178_1_result).
has_part(trial_of_nutrients_lagtime_c00178_1_result,trial_of_nutrients_lagtime_c00178_1_result_1).
has_representation(trial_of_nutrients_lagtime_c00178_1_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00178_1_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00178_1_result_1,trial_of_nutrients_lagtime_c00178_1_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00178_1_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00178_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00178_1_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00178_1_result,trial_of_nutrients_lagtime_c00178_1_result_2).
has_representation(trial_of_nutrients_lagtime_c00178_1_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00178_1_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00178_1_result_2,trial_of_nutrients_lagtime_c00178_1_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00178_1_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00178_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00178_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00178,trial_of_nutrients_lagtime_c00178_results).
result(trial_of_nutrients_lagtime_c00178_results).
has_part(trial_of_nutrients_lagtime_c00178_results,trial_of_nutrients_lagtime_c00178_results_1).
has_representation(trial_of_nutrients_lagtime_c00178_results_1,'median of wildtype medians in minimal').
text_representation('median of wildtype medians in minimal').
has_proposition(trial_of_nutrients_lagtime_c00178_results_1,trial_of_nutrients_lagtime_c00178_results_1_proc).
procedure(trial_of_nutrients_lagtime_c00178_results_1_proc).
has_proposition(trial_of_nutrients_lagtime_c00178_results_1_proc,'procedures/remove_dupl_medians_nut.R').
link('procedures/remove_dupl_medians_nut.R').
has_part(trial_of_nutrients_lagtime_c00178_results,trial_of_nutrients_lagtime_c00178_results_2).
has_representation(trial_of_nutrients_lagtime_c00178_results_2,'median of wildtype medians in minimal with metabolite').
text_representation('median of wildtype medians in minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00178_results_2,trial_of_nutrients_lagtime_c00178_results_2_proc).
procedure(trial_of_nutrients_lagtime_c00178_results_2_proc).
has_proposition(trial_of_nutrients_lagtime_c00178_results_2_proc,'procedures/remove_dupl_medians_nut.R').
link('procedures/remove_dupl_medians_nut.R').
has_part(trial_of_nutrients_lagtime_c00178_results,trial_of_nutrients_lagtime_c00178_results_3).
has_representation(trial_of_nutrients_lagtime_c00178_results_3,'difference between trial_of_nutrients_lagtime_c00178_results_1 and trial_of_nutrients_lagtime_c00178_results_2').
text_representation('difference between trial_of_nutrients_lagtime_c00178_results_1 and trial_of_nutrients_lagtime_c00178_results_2').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_result).
result(study_on_rich_growthrate_result).
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_1).
has_representation(study_on_rich_growthrate_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_rich_growthrate_result_1,'results/wr_kr_growth_rate.csv').
link('results/wr_kr_growth_rate.csv').
has_proposition(study_on_rich_growthrate_result_1,study_on_rich_growthrate_result_1_proc).
procedure(study_on_rich_growthrate_result_1_proc).
has_proposition(study_on_rich_growthrate_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_2).
has_representation(study_on_rich_growthrate_result_2,'bar graph (histogram) plotting study_on_rich_growthrate_result_1').
text_representation('bar graph (histogram) plotting study_on_rich_growthrate_result_1').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate1.tiff').
link('results/kr_wr_growth_rate1.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate2.tiff').
link('results/kr_wr_growth_rate2.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/overlayed_growth_rate.tiff').
link('results/overlayed_growth_rate.tiff').
has_proposition(study_on_rich_growthrate_result_2,study_on_rich_growthrate_result_2_proc).
procedure(study_on_rich_growthrate_result_2_proc).
has_proposition(study_on_rich_growthrate_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_conclusion).
conclusion(study_on_rich_growthrate_conclusion).
has_representation(study_on_rich_growthrate_conclusion,'The knockouts have higher growth rate in rich than the wild type').
text_representation('The knockouts have higher growth rate in rich than the wild type').
has_proposition(study_on_rich_growthrate_conclusion,'obtain statistical mode of study_on_rich_growthrate_result_1').
procedure('obtain statistical mode of study_on_rich_growthrate_result_1').
text_representation('obtain statistical mode of study_on_rich_growthrate_result_1').
has_part(study_of_nutrients_lagtime,trial_of_nutrients_lagtime_c00212).
trial(trial_of_nutrients_lagtime_c00212).
has_agent(trial_of_nutrients_lagtime_c00212,c00212).
metabolite(c00212).
has_proposition(trial_of_nutrients_lagtime_c00212_1,trial_of_nutrients_lagtime_c00212_1_design).
design(trial_of_nutrients_lagtime_c00212_1_design).
has_proposition(trial_of_nutrients_lagtime_c00212_1_design,trial_of_nutrients_lagtime_c00212_1_factor).
factor(trial_of_nutrients_lagtime_c00212_1_factor).
has_representation(trial_of_nutrients_lagtime_c00212_1_factor,'presence or absence of c00212').
has_input(trial_of_nutrients_lagtime_c00212_1,trial_of_nutrients_lagtime_c00212_1_data).
data(trial_of_nutrients_lagtime_c00212_1_data).
has_part(trial_of_nutrients_lagtime_c00212_1_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00212_1_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00212_1_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00212_1,'mar07-trial4_expt1-plate005').
plate('mar07-trial4_expt1-plate005').
has_proposition(trial_of_nutrients_lagtime_c00212_1,trial_of_nutrients_lagtime_c00212_1_result).
result(trial_of_nutrients_lagtime_c00212_1_result).
has_part(trial_of_nutrients_lagtime_c00212_1_result,trial_of_nutrients_lagtime_c00212_1_result_1).
has_representation(trial_of_nutrients_lagtime_c00212_1_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00212_1_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00212_1_result_1,trial_of_nutrients_lagtime_c00212_1_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00212_1_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00212_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00212_1_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00212_1_result,trial_of_nutrients_lagtime_c00212_1_result_2).
has_representation(trial_of_nutrients_lagtime_c00212_1_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00212_1_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00212_1_result_2,trial_of_nutrients_lagtime_c00212_1_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00212_1_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00212_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00212_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00212,trial_of_nutrients_lagtime_c00212_results).
result(trial_of_nutrients_lagtime_c00212_results).
has_part(trial_of_nutrients_lagtime_c00212_results,trial_of_nutrients_lagtime_c00212_results_1).
has_representation(trial_of_nutrients_lagtime_c00212_results_1,'median of wildtype medians in minimal').
text_representation('median of wildtype medians in minimal').
has_proposition(trial_of_nutrients_lagtime_c00212_results_1,trial_of_nutrients_lagtime_c00212_results_1_proc).
procedure(trial_of_nutrients_lagtime_c00212_results_1_proc).
has_proposition(trial_of_nutrients_lagtime_c00212_results_1_proc,'procedures/remove_dupl_medians_nut.R').
link('procedures/remove_dupl_medians_nut.R').
has_part(trial_of_nutrients_lagtime_c00212_results,trial_of_nutrients_lagtime_c00212_results_2).
has_representation(trial_of_nutrients_lagtime_c00212_results_2,'median of wildtype medians in minimal with metabolite').
text_representation('median of wildtype medians in minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00212_results_2,trial_of_nutrients_lagtime_c00212_results_2_proc).
procedure(trial_of_nutrients_lagtime_c00212_results_2_proc).
has_proposition(trial_of_nutrients_lagtime_c00212_results_2_proc,'procedures/remove_dupl_medians_nut.R').
link('procedures/remove_dupl_medians_nut.R').
has_part(trial_of_nutrients_lagtime_c00212_results,trial_of_nutrients_lagtime_c00212_results_3).
has_representation(trial_of_nutrients_lagtime_c00212_results_3,'difference between trial_of_nutrients_lagtime_c00212_results_1 and trial_of_nutrients_lagtime_c00212_results_2').
text_representation('difference between trial_of_nutrients_lagtime_c00212_results_1 and trial_of_nutrients_lagtime_c00212_results_2').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_result).
result(study_on_rich_growthrate_result).
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_1).
has_representation(study_on_rich_growthrate_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_rich_growthrate_result_1,'results/wr_kr_growth_rate.csv').
link('results/wr_kr_growth_rate.csv').
has_proposition(study_on_rich_growthrate_result_1,study_on_rich_growthrate_result_1_proc).
procedure(study_on_rich_growthrate_result_1_proc).
has_proposition(study_on_rich_growthrate_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_2).
has_representation(study_on_rich_growthrate_result_2,'bar graph (histogram) plotting study_on_rich_growthrate_result_1').
text_representation('bar graph (histogram) plotting study_on_rich_growthrate_result_1').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate1.tiff').
link('results/kr_wr_growth_rate1.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate2.tiff').
link('results/kr_wr_growth_rate2.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/overlayed_growth_rate.tiff').
link('results/overlayed_growth_rate.tiff').
has_proposition(study_on_rich_growthrate_result_2,study_on_rich_growthrate_result_2_proc).
procedure(study_on_rich_growthrate_result_2_proc).
has_proposition(study_on_rich_growthrate_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_conclusion).
conclusion(study_on_rich_growthrate_conclusion).
has_representation(study_on_rich_growthrate_conclusion,'The knockouts have higher growth rate in rich than the wild type').
text_representation('The knockouts have higher growth rate in rich than the wild type').
has_proposition(study_on_rich_growthrate_conclusion,'obtain statistical mode of study_on_rich_growthrate_result_1').
procedure('obtain statistical mode of study_on_rich_growthrate_result_1').
text_representation('obtain statistical mode of study_on_rich_growthrate_result_1').
has_part(study_of_nutrients_lagtime,trial_of_nutrients_lagtime_c02714).
trial(trial_of_nutrients_lagtime_c02714).
has_agent(trial_of_nutrients_lagtime_c02714,c02714).
metabolite(c02714).
has_proposition(trial_of_nutrients_lagtime_c02714_1,trial_of_nutrients_lagtime_c02714_1_design).
design(trial_of_nutrients_lagtime_c02714_1_design).
has_proposition(trial_of_nutrients_lagtime_c02714_1_design,trial_of_nutrients_lagtime_c02714_1_factor).
factor(trial_of_nutrients_lagtime_c02714_1_factor).
has_representation(trial_of_nutrients_lagtime_c02714_1_factor,'presence or absence of c02714').
has_input(trial_of_nutrients_lagtime_c02714_1,trial_of_nutrients_lagtime_c02714_1_data).
data(trial_of_nutrients_lagtime_c02714_1_data).
has_part(trial_of_nutrients_lagtime_c02714_1_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c02714_1_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c02714_1_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c02714_1,'mar07-trial4_expt1-plate003').
plate('mar07-trial4_expt1-plate003').
has_proposition(trial_of_nutrients_lagtime_c02714_1,trial_of_nutrients_lagtime_c02714_1_result).
result(trial_of_nutrients_lagtime_c02714_1_result).
has_part(trial_of_nutrients_lagtime_c02714_1_result,trial_of_nutrients_lagtime_c02714_1_result_1).
has_representation(trial_of_nutrients_lagtime_c02714_1_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c02714_1_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c02714_1_result_1,trial_of_nutrients_lagtime_c02714_1_result_1_proc).
procedure(trial_of_nutrients_lagtime_c02714_1_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c02714_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c02714_1_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c02714_1_result,trial_of_nutrients_lagtime_c02714_1_result_2).
has_representation(trial_of_nutrients_lagtime_c02714_1_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c02714_1_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c02714_1_result_2,trial_of_nutrients_lagtime_c02714_1_result_2_proc).
procedure(trial_of_nutrients_lagtime_c02714_1_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c02714_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c02714_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c02714,trial_of_nutrients_lagtime_c02714_results).
result(trial_of_nutrients_lagtime_c02714_results).
has_part(trial_of_nutrients_lagtime_c02714_results,trial_of_nutrients_lagtime_c02714_results_1).
has_representation(trial_of_nutrients_lagtime_c02714_results_1,'median of wildtype medians in minimal').
text_representation('median of wildtype medians in minimal').
has_proposition(trial_of_nutrients_lagtime_c02714_results_1,trial_of_nutrients_lagtime_c02714_results_1_proc).
procedure(trial_of_nutrients_lagtime_c02714_results_1_proc).
has_proposition(trial_of_nutrients_lagtime_c02714_results_1_proc,'procedures/remove_dupl_medians_nut.R').
link('procedures/remove_dupl_medians_nut.R').
has_part(trial_of_nutrients_lagtime_c02714_results,trial_of_nutrients_lagtime_c02714_results_2).
has_representation(trial_of_nutrients_lagtime_c02714_results_2,'median of wildtype medians in minimal with metabolite').
text_representation('median of wildtype medians in minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c02714_results_2,trial_of_nutrients_lagtime_c02714_results_2_proc).
procedure(trial_of_nutrients_lagtime_c02714_results_2_proc).
has_proposition(trial_of_nutrients_lagtime_c02714_results_2_proc,'procedures/remove_dupl_medians_nut.R').
link('procedures/remove_dupl_medians_nut.R').
has_part(trial_of_nutrients_lagtime_c02714_results,trial_of_nutrients_lagtime_c02714_results_3).
has_representation(trial_of_nutrients_lagtime_c02714_results_3,'difference between trial_of_nutrients_lagtime_c02714_results_1 and trial_of_nutrients_lagtime_c02714_results_2').
text_representation('difference between trial_of_nutrients_lagtime_c02714_results_1 and trial_of_nutrients_lagtime_c02714_results_2').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_result).
result(study_on_rich_growthrate_result).
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_1).
has_representation(study_on_rich_growthrate_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_rich_growthrate_result_1,'results/wr_kr_growth_rate.csv').
link('results/wr_kr_growth_rate.csv').
has_proposition(study_on_rich_growthrate_result_1,study_on_rich_growthrate_result_1_proc).
procedure(study_on_rich_growthrate_result_1_proc).
has_proposition(study_on_rich_growthrate_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_2).
has_representation(study_on_rich_growthrate_result_2,'bar graph (histogram) plotting study_on_rich_growthrate_result_1').
text_representation('bar graph (histogram) plotting study_on_rich_growthrate_result_1').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate1.tiff').
link('results/kr_wr_growth_rate1.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate2.tiff').
link('results/kr_wr_growth_rate2.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/overlayed_growth_rate.tiff').
link('results/overlayed_growth_rate.tiff').
has_proposition(study_on_rich_growthrate_result_2,study_on_rich_growthrate_result_2_proc).
procedure(study_on_rich_growthrate_result_2_proc).
has_proposition(study_on_rich_growthrate_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_conclusion).
conclusion(study_on_rich_growthrate_conclusion).
has_representation(study_on_rich_growthrate_conclusion,'The knockouts have higher growth rate in rich than the wild type').
text_representation('The knockouts have higher growth rate in rich than the wild type').
has_proposition(study_on_rich_growthrate_conclusion,'obtain statistical mode of study_on_rich_growthrate_result_1').
procedure('obtain statistical mode of study_on_rich_growthrate_result_1').
text_representation('obtain statistical mode of study_on_rich_growthrate_result_1').
has_part(study_of_nutrients_lagtime,trial_of_nutrients_lagtime_c00122).
trial(trial_of_nutrients_lagtime_c00122).
has_agent(trial_of_nutrients_lagtime_c00122,c00122).
metabolite(c00122).
has_proposition(trial_of_nutrients_lagtime_c00122_1,trial_of_nutrients_lagtime_c00122_1_design).
design(trial_of_nutrients_lagtime_c00122_1_design).
has_proposition(trial_of_nutrients_lagtime_c00122_1_design,trial_of_nutrients_lagtime_c00122_1_factor).
factor(trial_of_nutrients_lagtime_c00122_1_factor).
has_representation(trial_of_nutrients_lagtime_c00122_1_factor,'presence or absence of c00122').
has_input(trial_of_nutrients_lagtime_c00122_1,trial_of_nutrients_lagtime_c00122_1_data).
data(trial_of_nutrients_lagtime_c00122_1_data).
has_part(trial_of_nutrients_lagtime_c00122_1_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00122_1_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00122_1_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00122_1,'mar07-trial4_expt1-plate002').
plate('mar07-trial4_expt1-plate002').
has_proposition(trial_of_nutrients_lagtime_c00122_1,trial_of_nutrients_lagtime_c00122_1_result).
result(trial_of_nutrients_lagtime_c00122_1_result).
has_part(trial_of_nutrients_lagtime_c00122_1_result,trial_of_nutrients_lagtime_c00122_1_result_1).
has_representation(trial_of_nutrients_lagtime_c00122_1_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00122_1_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00122_1_result_1,trial_of_nutrients_lagtime_c00122_1_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00122_1_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00122_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00122_1_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00122_1_result,trial_of_nutrients_lagtime_c00122_1_result_2).
has_representation(trial_of_nutrients_lagtime_c00122_1_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00122_1_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00122_1_result_2,trial_of_nutrients_lagtime_c00122_1_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00122_1_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00122_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00122_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00122,trial_of_nutrients_lagtime_c00122_results).
result(trial_of_nutrients_lagtime_c00122_results).
has_part(trial_of_nutrients_lagtime_c00122_results,trial_of_nutrients_lagtime_c00122_results_1).
has_representation(trial_of_nutrients_lagtime_c00122_results_1,'median of wildtype medians in minimal').
text_representation('median of wildtype medians in minimal').
has_proposition(trial_of_nutrients_lagtime_c00122_results_1,trial_of_nutrients_lagtime_c00122_results_1_proc).
procedure(trial_of_nutrients_lagtime_c00122_results_1_proc).
has_proposition(trial_of_nutrients_lagtime_c00122_results_1_proc,'procedures/remove_dupl_medians_nut.R').
link('procedures/remove_dupl_medians_nut.R').
has_part(trial_of_nutrients_lagtime_c00122_results,trial_of_nutrients_lagtime_c00122_results_2).
has_representation(trial_of_nutrients_lagtime_c00122_results_2,'median of wildtype medians in minimal with metabolite').
text_representation('median of wildtype medians in minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00122_results_2,trial_of_nutrients_lagtime_c00122_results_2_proc).
procedure(trial_of_nutrients_lagtime_c00122_results_2_proc).
has_proposition(trial_of_nutrients_lagtime_c00122_results_2_proc,'procedures/remove_dupl_medians_nut.R').
link('procedures/remove_dupl_medians_nut.R').
has_part(trial_of_nutrients_lagtime_c00122_results,trial_of_nutrients_lagtime_c00122_results_3).
has_representation(trial_of_nutrients_lagtime_c00122_results_3,'difference between trial_of_nutrients_lagtime_c00122_results_1 and trial_of_nutrients_lagtime_c00122_results_2').
text_representation('difference between trial_of_nutrients_lagtime_c00122_results_1 and trial_of_nutrients_lagtime_c00122_results_2').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_result).
result(study_on_rich_growthrate_result).
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_1).
has_representation(study_on_rich_growthrate_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_rich_growthrate_result_1,'results/wr_kr_growth_rate.csv').
link('results/wr_kr_growth_rate.csv').
has_proposition(study_on_rich_growthrate_result_1,study_on_rich_growthrate_result_1_proc).
procedure(study_on_rich_growthrate_result_1_proc).
has_proposition(study_on_rich_growthrate_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_2).
has_representation(study_on_rich_growthrate_result_2,'bar graph (histogram) plotting study_on_rich_growthrate_result_1').
text_representation('bar graph (histogram) plotting study_on_rich_growthrate_result_1').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate1.tiff').
link('results/kr_wr_growth_rate1.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate2.tiff').
link('results/kr_wr_growth_rate2.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/overlayed_growth_rate.tiff').
link('results/overlayed_growth_rate.tiff').
has_proposition(study_on_rich_growthrate_result_2,study_on_rich_growthrate_result_2_proc).
procedure(study_on_rich_growthrate_result_2_proc).
has_proposition(study_on_rich_growthrate_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_conclusion).
conclusion(study_on_rich_growthrate_conclusion).
has_representation(study_on_rich_growthrate_conclusion,'The knockouts have higher growth rate in rich than the wild type').
text_representation('The knockouts have higher growth rate in rich than the wild type').
has_proposition(study_on_rich_growthrate_conclusion,'obtain statistical mode of study_on_rich_growthrate_result_1').
procedure('obtain statistical mode of study_on_rich_growthrate_result_1').
text_representation('obtain statistical mode of study_on_rich_growthrate_result_1').
has_part(study_of_nutrients_lagtime,trial_of_nutrients_lagtime_c00097).
trial(trial_of_nutrients_lagtime_c00097).
has_agent(trial_of_nutrients_lagtime_c00097,c00097).
metabolite(c00097).
has_proposition(trial_of_nutrients_lagtime_c00097_1,trial_of_nutrients_lagtime_c00097_1_design).
design(trial_of_nutrients_lagtime_c00097_1_design).
has_proposition(trial_of_nutrients_lagtime_c00097_1_design,trial_of_nutrients_lagtime_c00097_1_factor).
factor(trial_of_nutrients_lagtime_c00097_1_factor).
has_representation(trial_of_nutrients_lagtime_c00097_1_factor,'presence or absence of c00097').
has_input(trial_of_nutrients_lagtime_c00097_1,trial_of_nutrients_lagtime_c00097_1_data).
data(trial_of_nutrients_lagtime_c00097_1_data).
has_part(trial_of_nutrients_lagtime_c00097_1_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00097_1_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00097_1_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00097_1,'jan07-trial2_expt001-plate002').
plate('jan07-trial2_expt001-plate002').
has_proposition(trial_of_nutrients_lagtime_c00097_1,trial_of_nutrients_lagtime_c00097_1_result).
result(trial_of_nutrients_lagtime_c00097_1_result).
has_part(trial_of_nutrients_lagtime_c00097_1_result,trial_of_nutrients_lagtime_c00097_1_result_1).
has_representation(trial_of_nutrients_lagtime_c00097_1_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00097_1_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00097_1_result_1,trial_of_nutrients_lagtime_c00097_1_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00097_1_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00097_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00097_1_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00097_1_result,trial_of_nutrients_lagtime_c00097_1_result_2).
has_representation(trial_of_nutrients_lagtime_c00097_1_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00097_1_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00097_1_result_2,trial_of_nutrients_lagtime_c00097_1_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00097_1_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00097_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00097_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00097,trial_of_nutrients_lagtime_c00097_results).
result(trial_of_nutrients_lagtime_c00097_results).
has_part(trial_of_nutrients_lagtime_c00097_results,trial_of_nutrients_lagtime_c00097_results_1).
has_representation(trial_of_nutrients_lagtime_c00097_results_1,'median of wildtype medians in minimal').
text_representation('median of wildtype medians in minimal').
has_proposition(trial_of_nutrients_lagtime_c00097_results_1,trial_of_nutrients_lagtime_c00097_results_1_proc).
procedure(trial_of_nutrients_lagtime_c00097_results_1_proc).
has_proposition(trial_of_nutrients_lagtime_c00097_results_1_proc,'procedures/remove_dupl_medians_nut.R').
link('procedures/remove_dupl_medians_nut.R').
has_part(trial_of_nutrients_lagtime_c00097_results,trial_of_nutrients_lagtime_c00097_results_2).
has_representation(trial_of_nutrients_lagtime_c00097_results_2,'median of wildtype medians in minimal with metabolite').
text_representation('median of wildtype medians in minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00097_results_2,trial_of_nutrients_lagtime_c00097_results_2_proc).
procedure(trial_of_nutrients_lagtime_c00097_results_2_proc).
has_proposition(trial_of_nutrients_lagtime_c00097_results_2_proc,'procedures/remove_dupl_medians_nut.R').
link('procedures/remove_dupl_medians_nut.R').
has_part(trial_of_nutrients_lagtime_c00097_results,trial_of_nutrients_lagtime_c00097_results_3).
has_representation(trial_of_nutrients_lagtime_c00097_results_3,'difference between trial_of_nutrients_lagtime_c00097_results_1 and trial_of_nutrients_lagtime_c00097_results_2').
text_representation('difference between trial_of_nutrients_lagtime_c00097_results_1 and trial_of_nutrients_lagtime_c00097_results_2').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_result).
result(study_on_rich_growthrate_result).
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_1).
has_representation(study_on_rich_growthrate_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_rich_growthrate_result_1,'results/wr_kr_growth_rate.csv').
link('results/wr_kr_growth_rate.csv').
has_proposition(study_on_rich_growthrate_result_1,study_on_rich_growthrate_result_1_proc).
procedure(study_on_rich_growthrate_result_1_proc).
has_proposition(study_on_rich_growthrate_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_2).
has_representation(study_on_rich_growthrate_result_2,'bar graph (histogram) plotting study_on_rich_growthrate_result_1').
text_representation('bar graph (histogram) plotting study_on_rich_growthrate_result_1').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate1.tiff').
link('results/kr_wr_growth_rate1.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate2.tiff').
link('results/kr_wr_growth_rate2.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/overlayed_growth_rate.tiff').
link('results/overlayed_growth_rate.tiff').
has_proposition(study_on_rich_growthrate_result_2,study_on_rich_growthrate_result_2_proc).
procedure(study_on_rich_growthrate_result_2_proc).
has_proposition(study_on_rich_growthrate_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_conclusion).
conclusion(study_on_rich_growthrate_conclusion).
has_representation(study_on_rich_growthrate_conclusion,'The knockouts have higher growth rate in rich than the wild type').
text_representation('The knockouts have higher growth rate in rich than the wild type').
has_proposition(study_on_rich_growthrate_conclusion,'obtain statistical mode of study_on_rich_growthrate_result_1').
procedure('obtain statistical mode of study_on_rich_growthrate_result_1').
text_representation('obtain statistical mode of study_on_rich_growthrate_result_1').
has_part(study_of_nutrients_lagtime,trial_of_nutrients_lagtime_c05512).
trial(trial_of_nutrients_lagtime_c05512).
has_agent(trial_of_nutrients_lagtime_c05512,c05512).
metabolite(c05512).
has_proposition(trial_of_nutrients_lagtime_c05512_1,trial_of_nutrients_lagtime_c05512_1_design).
design(trial_of_nutrients_lagtime_c05512_1_design).
has_proposition(trial_of_nutrients_lagtime_c05512_1_design,trial_of_nutrients_lagtime_c05512_1_factor).
factor(trial_of_nutrients_lagtime_c05512_1_factor).
has_representation(trial_of_nutrients_lagtime_c05512_1_factor,'presence or absence of c05512').
has_input(trial_of_nutrients_lagtime_c05512_1,trial_of_nutrients_lagtime_c05512_1_data).
data(trial_of_nutrients_lagtime_c05512_1_data).
has_part(trial_of_nutrients_lagtime_c05512_1_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c05512_1_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c05512_1_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c05512_1,'mar07-trial9_expt001-plate005').
plate('mar07-trial9_expt001-plate005').
has_proposition(trial_of_nutrients_lagtime_c05512_1,trial_of_nutrients_lagtime_c05512_1_result).
result(trial_of_nutrients_lagtime_c05512_1_result).
has_part(trial_of_nutrients_lagtime_c05512_1_result,trial_of_nutrients_lagtime_c05512_1_result_1).
has_representation(trial_of_nutrients_lagtime_c05512_1_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c05512_1_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c05512_1_result_1,trial_of_nutrients_lagtime_c05512_1_result_1_proc).
procedure(trial_of_nutrients_lagtime_c05512_1_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c05512_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c05512_1_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c05512_1_result,trial_of_nutrients_lagtime_c05512_1_result_2).
has_representation(trial_of_nutrients_lagtime_c05512_1_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c05512_1_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c05512_1_result_2,trial_of_nutrients_lagtime_c05512_1_result_2_proc).
procedure(trial_of_nutrients_lagtime_c05512_1_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c05512_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c05512_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c05512,trial_of_nutrients_lagtime_c05512_results).
result(trial_of_nutrients_lagtime_c05512_results).
has_part(trial_of_nutrients_lagtime_c05512_results,trial_of_nutrients_lagtime_c05512_results_1).
has_representation(trial_of_nutrients_lagtime_c05512_results_1,'median of wildtype medians in minimal').
text_representation('median of wildtype medians in minimal').
has_proposition(trial_of_nutrients_lagtime_c05512_results_1,trial_of_nutrients_lagtime_c05512_results_1_proc).
procedure(trial_of_nutrients_lagtime_c05512_results_1_proc).
has_proposition(trial_of_nutrients_lagtime_c05512_results_1_proc,'procedures/remove_dupl_medians_nut.R').
link('procedures/remove_dupl_medians_nut.R').
has_part(trial_of_nutrients_lagtime_c05512_results,trial_of_nutrients_lagtime_c05512_results_2).
has_representation(trial_of_nutrients_lagtime_c05512_results_2,'median of wildtype medians in minimal with metabolite').
text_representation('median of wildtype medians in minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c05512_results_2,trial_of_nutrients_lagtime_c05512_results_2_proc).
procedure(trial_of_nutrients_lagtime_c05512_results_2_proc).
has_proposition(trial_of_nutrients_lagtime_c05512_results_2_proc,'procedures/remove_dupl_medians_nut.R').
link('procedures/remove_dupl_medians_nut.R').
has_part(trial_of_nutrients_lagtime_c05512_results,trial_of_nutrients_lagtime_c05512_results_3).
has_representation(trial_of_nutrients_lagtime_c05512_results_3,'difference between trial_of_nutrients_lagtime_c05512_results_1 and trial_of_nutrients_lagtime_c05512_results_2').
text_representation('difference between trial_of_nutrients_lagtime_c05512_results_1 and trial_of_nutrients_lagtime_c05512_results_2').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_result).
result(study_on_rich_growthrate_result).
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_1).
has_representation(study_on_rich_growthrate_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_rich_growthrate_result_1,'results/wr_kr_growth_rate.csv').
link('results/wr_kr_growth_rate.csv').
has_proposition(study_on_rich_growthrate_result_1,study_on_rich_growthrate_result_1_proc).
procedure(study_on_rich_growthrate_result_1_proc).
has_proposition(study_on_rich_growthrate_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_2).
has_representation(study_on_rich_growthrate_result_2,'bar graph (histogram) plotting study_on_rich_growthrate_result_1').
text_representation('bar graph (histogram) plotting study_on_rich_growthrate_result_1').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate1.tiff').
link('results/kr_wr_growth_rate1.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate2.tiff').
link('results/kr_wr_growth_rate2.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/overlayed_growth_rate.tiff').
link('results/overlayed_growth_rate.tiff').
has_proposition(study_on_rich_growthrate_result_2,study_on_rich_growthrate_result_2_proc).
procedure(study_on_rich_growthrate_result_2_proc).
has_proposition(study_on_rich_growthrate_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_conclusion).
conclusion(study_on_rich_growthrate_conclusion).
has_representation(study_on_rich_growthrate_conclusion,'The knockouts have higher growth rate in rich than the wild type').
text_representation('The knockouts have higher growth rate in rich than the wild type').
has_proposition(study_on_rich_growthrate_conclusion,'obtain statistical mode of study_on_rich_growthrate_result_1').
procedure('obtain statistical mode of study_on_rich_growthrate_result_1').
text_representation('obtain statistical mode of study_on_rich_growthrate_result_1').
has_part(study_of_nutrients_lagtime,trial_of_nutrients_lagtime_c00037).
trial(trial_of_nutrients_lagtime_c00037).
has_agent(trial_of_nutrients_lagtime_c00037,c00037).
metabolite(c00037).
has_proposition(trial_of_nutrients_lagtime_c00037_1,trial_of_nutrients_lagtime_c00037_1_design).
design(trial_of_nutrients_lagtime_c00037_1_design).
has_proposition(trial_of_nutrients_lagtime_c00037_1_design,trial_of_nutrients_lagtime_c00037_1_factor).
factor(trial_of_nutrients_lagtime_c00037_1_factor).
has_representation(trial_of_nutrients_lagtime_c00037_1_factor,'presence or absence of c00037').
has_input(trial_of_nutrients_lagtime_c00037_1,trial_of_nutrients_lagtime_c00037_1_data).
data(trial_of_nutrients_lagtime_c00037_1_data).
has_part(trial_of_nutrients_lagtime_c00037_1_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00037_1_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00037_1_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00037_1,'feb07-trial1_expt001-plate004').
plate('feb07-trial1_expt001-plate004').
has_proposition(trial_of_nutrients_lagtime_c00037_1,trial_of_nutrients_lagtime_c00037_1_result).
result(trial_of_nutrients_lagtime_c00037_1_result).
has_part(trial_of_nutrients_lagtime_c00037_1_result,trial_of_nutrients_lagtime_c00037_1_result_1).
has_representation(trial_of_nutrients_lagtime_c00037_1_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00037_1_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00037_1_result_1,trial_of_nutrients_lagtime_c00037_1_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00037_1_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00037_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00037_1_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00037_1_result,trial_of_nutrients_lagtime_c00037_1_result_2).
has_representation(trial_of_nutrients_lagtime_c00037_1_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00037_1_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00037_1_result_2,trial_of_nutrients_lagtime_c00037_1_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00037_1_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00037_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00037_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00037_2,trial_of_nutrients_lagtime_c00037_2_design).
design(trial_of_nutrients_lagtime_c00037_2_design).
has_proposition(trial_of_nutrients_lagtime_c00037_2_design,trial_of_nutrients_lagtime_c00037_2_factor).
factor(trial_of_nutrients_lagtime_c00037_2_factor).
has_representation(trial_of_nutrients_lagtime_c00037_2_factor,'presence or absence of c00037').
has_input(trial_of_nutrients_lagtime_c00037_2,trial_of_nutrients_lagtime_c00037_2_data).
data(trial_of_nutrients_lagtime_c00037_2_data).
has_part(trial_of_nutrients_lagtime_c00037_2_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00037_2_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00037_2_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00037_2,'jan07-trial1_expt001-plate001').
plate('jan07-trial1_expt001-plate001').
has_proposition(trial_of_nutrients_lagtime_c00037_2,trial_of_nutrients_lagtime_c00037_2_result).
result(trial_of_nutrients_lagtime_c00037_2_result).
has_part(trial_of_nutrients_lagtime_c00037_2_result,trial_of_nutrients_lagtime_c00037_2_result_1).
has_representation(trial_of_nutrients_lagtime_c00037_2_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00037_2_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00037_2_result_1,trial_of_nutrients_lagtime_c00037_2_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00037_2_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00037_2_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00037_2_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00037_2_result,trial_of_nutrients_lagtime_c00037_2_result_2).
has_representation(trial_of_nutrients_lagtime_c00037_2_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00037_2_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00037_2_result_2,trial_of_nutrients_lagtime_c00037_2_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00037_2_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00037_2_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00037_2_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00037_3,trial_of_nutrients_lagtime_c00037_3_design).
design(trial_of_nutrients_lagtime_c00037_3_design).
has_proposition(trial_of_nutrients_lagtime_c00037_3_design,trial_of_nutrients_lagtime_c00037_3_factor).
factor(trial_of_nutrients_lagtime_c00037_3_factor).
has_representation(trial_of_nutrients_lagtime_c00037_3_factor,'presence or absence of c00037').
has_input(trial_of_nutrients_lagtime_c00037_3,trial_of_nutrients_lagtime_c00037_3_data).
data(trial_of_nutrients_lagtime_c00037_3_data).
has_part(trial_of_nutrients_lagtime_c00037_3_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00037_3_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00037_3_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00037_3,'jan07-trial1_expt001-plate002').
plate('jan07-trial1_expt001-plate002').
has_proposition(trial_of_nutrients_lagtime_c00037_3,trial_of_nutrients_lagtime_c00037_3_result).
result(trial_of_nutrients_lagtime_c00037_3_result).
has_part(trial_of_nutrients_lagtime_c00037_3_result,trial_of_nutrients_lagtime_c00037_3_result_1).
has_representation(trial_of_nutrients_lagtime_c00037_3_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00037_3_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00037_3_result_1,trial_of_nutrients_lagtime_c00037_3_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00037_3_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00037_3_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00037_3_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00037_3_result,trial_of_nutrients_lagtime_c00037_3_result_2).
has_representation(trial_of_nutrients_lagtime_c00037_3_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00037_3_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00037_3_result_2,trial_of_nutrients_lagtime_c00037_3_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00037_3_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00037_3_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00037_3_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00037,trial_of_nutrients_lagtime_c00037_results).
result(trial_of_nutrients_lagtime_c00037_results).
has_part(trial_of_nutrients_lagtime_c00037_results,trial_of_nutrients_lagtime_c00037_results_1).
has_representation(trial_of_nutrients_lagtime_c00037_results_1,'median of wildtype medians in minimal').
text_representation('median of wildtype medians in minimal').
has_proposition(trial_of_nutrients_lagtime_c00037_results_1,trial_of_nutrients_lagtime_c00037_results_1_proc).
procedure(trial_of_nutrients_lagtime_c00037_results_1_proc).
has_proposition(trial_of_nutrients_lagtime_c00037_results_1_proc,'procedures/remove_dupl_medians_nut.R').
link('procedures/remove_dupl_medians_nut.R').
has_part(trial_of_nutrients_lagtime_c00037_results,trial_of_nutrients_lagtime_c00037_results_2).
has_representation(trial_of_nutrients_lagtime_c00037_results_2,'median of wildtype medians in minimal with metabolite').
text_representation('median of wildtype medians in minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00037_results_2,trial_of_nutrients_lagtime_c00037_results_2_proc).
procedure(trial_of_nutrients_lagtime_c00037_results_2_proc).
has_proposition(trial_of_nutrients_lagtime_c00037_results_2_proc,'procedures/remove_dupl_medians_nut.R').
link('procedures/remove_dupl_medians_nut.R').
has_part(trial_of_nutrients_lagtime_c00037_results,trial_of_nutrients_lagtime_c00037_results_3).
has_representation(trial_of_nutrients_lagtime_c00037_results_3,'difference between trial_of_nutrients_lagtime_c00037_results_1 and trial_of_nutrients_lagtime_c00037_results_2').
text_representation('difference between trial_of_nutrients_lagtime_c00037_results_1 and trial_of_nutrients_lagtime_c00037_results_2').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_result).
result(study_on_rich_growthrate_result).
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_1).
has_representation(study_on_rich_growthrate_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_rich_growthrate_result_1,'results/wr_kr_growth_rate.csv').
link('results/wr_kr_growth_rate.csv').
has_proposition(study_on_rich_growthrate_result_1,study_on_rich_growthrate_result_1_proc).
procedure(study_on_rich_growthrate_result_1_proc).
has_proposition(study_on_rich_growthrate_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_2).
has_representation(study_on_rich_growthrate_result_2,'bar graph (histogram) plotting study_on_rich_growthrate_result_1').
text_representation('bar graph (histogram) plotting study_on_rich_growthrate_result_1').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate1.tiff').
link('results/kr_wr_growth_rate1.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate2.tiff').
link('results/kr_wr_growth_rate2.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/overlayed_growth_rate.tiff').
link('results/overlayed_growth_rate.tiff').
has_proposition(study_on_rich_growthrate_result_2,study_on_rich_growthrate_result_2_proc).
procedure(study_on_rich_growthrate_result_2_proc).
has_proposition(study_on_rich_growthrate_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_conclusion).
conclusion(study_on_rich_growthrate_conclusion).
has_representation(study_on_rich_growthrate_conclusion,'The knockouts have higher growth rate in rich than the wild type').
text_representation('The knockouts have higher growth rate in rich than the wild type').
has_proposition(study_on_rich_growthrate_conclusion,'obtain statistical mode of study_on_rich_growthrate_result_1').
procedure('obtain statistical mode of study_on_rich_growthrate_result_1').
text_representation('obtain statistical mode of study_on_rich_growthrate_result_1').
has_part(study_of_nutrients_lagtime,trial_of_nutrients_lagtime_c00294).
trial(trial_of_nutrients_lagtime_c00294).
has_agent(trial_of_nutrients_lagtime_c00294,c00294).
metabolite(c00294).
has_proposition(trial_of_nutrients_lagtime_c00294_1,trial_of_nutrients_lagtime_c00294_1_design).
design(trial_of_nutrients_lagtime_c00294_1_design).
has_proposition(trial_of_nutrients_lagtime_c00294_1_design,trial_of_nutrients_lagtime_c00294_1_factor).
factor(trial_of_nutrients_lagtime_c00294_1_factor).
has_representation(trial_of_nutrients_lagtime_c00294_1_factor,'presence or absence of c00294').
has_input(trial_of_nutrients_lagtime_c00294_1,trial_of_nutrients_lagtime_c00294_1_data).
data(trial_of_nutrients_lagtime_c00294_1_data).
has_part(trial_of_nutrients_lagtime_c00294_1_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00294_1_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00294_1_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00294_1,'mar07-trial6_expt001-plate008').
plate('mar07-trial6_expt001-plate008').
has_proposition(trial_of_nutrients_lagtime_c00294_1,trial_of_nutrients_lagtime_c00294_1_result).
result(trial_of_nutrients_lagtime_c00294_1_result).
has_part(trial_of_nutrients_lagtime_c00294_1_result,trial_of_nutrients_lagtime_c00294_1_result_1).
has_representation(trial_of_nutrients_lagtime_c00294_1_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00294_1_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00294_1_result_1,trial_of_nutrients_lagtime_c00294_1_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00294_1_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00294_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00294_1_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00294_1_result,trial_of_nutrients_lagtime_c00294_1_result_2).
has_representation(trial_of_nutrients_lagtime_c00294_1_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00294_1_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00294_1_result_2,trial_of_nutrients_lagtime_c00294_1_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00294_1_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00294_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00294_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00294,trial_of_nutrients_lagtime_c00294_results).
result(trial_of_nutrients_lagtime_c00294_results).
has_part(trial_of_nutrients_lagtime_c00294_results,trial_of_nutrients_lagtime_c00294_results_1).
has_representation(trial_of_nutrients_lagtime_c00294_results_1,'median of wildtype medians in minimal').
text_representation('median of wildtype medians in minimal').
has_proposition(trial_of_nutrients_lagtime_c00294_results_1,trial_of_nutrients_lagtime_c00294_results_1_proc).
procedure(trial_of_nutrients_lagtime_c00294_results_1_proc).
has_proposition(trial_of_nutrients_lagtime_c00294_results_1_proc,'procedures/remove_dupl_medians_nut.R').
link('procedures/remove_dupl_medians_nut.R').
has_part(trial_of_nutrients_lagtime_c00294_results,trial_of_nutrients_lagtime_c00294_results_2).
has_representation(trial_of_nutrients_lagtime_c00294_results_2,'median of wildtype medians in minimal with metabolite').
text_representation('median of wildtype medians in minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00294_results_2,trial_of_nutrients_lagtime_c00294_results_2_proc).
procedure(trial_of_nutrients_lagtime_c00294_results_2_proc).
has_proposition(trial_of_nutrients_lagtime_c00294_results_2_proc,'procedures/remove_dupl_medians_nut.R').
link('procedures/remove_dupl_medians_nut.R').
has_part(trial_of_nutrients_lagtime_c00294_results,trial_of_nutrients_lagtime_c00294_results_3).
has_representation(trial_of_nutrients_lagtime_c00294_results_3,'difference between trial_of_nutrients_lagtime_c00294_results_1 and trial_of_nutrients_lagtime_c00294_results_2').
text_representation('difference between trial_of_nutrients_lagtime_c00294_results_1 and trial_of_nutrients_lagtime_c00294_results_2').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_result).
result(study_on_rich_growthrate_result).
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_1).
has_representation(study_on_rich_growthrate_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_rich_growthrate_result_1,'results/wr_kr_growth_rate.csv').
link('results/wr_kr_growth_rate.csv').
has_proposition(study_on_rich_growthrate_result_1,study_on_rich_growthrate_result_1_proc).
procedure(study_on_rich_growthrate_result_1_proc).
has_proposition(study_on_rich_growthrate_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_2).
has_representation(study_on_rich_growthrate_result_2,'bar graph (histogram) plotting study_on_rich_growthrate_result_1').
text_representation('bar graph (histogram) plotting study_on_rich_growthrate_result_1').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate1.tiff').
link('results/kr_wr_growth_rate1.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate2.tiff').
link('results/kr_wr_growth_rate2.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/overlayed_growth_rate.tiff').
link('results/overlayed_growth_rate.tiff').
has_proposition(study_on_rich_growthrate_result_2,study_on_rich_growthrate_result_2_proc).
procedure(study_on_rich_growthrate_result_2_proc).
has_proposition(study_on_rich_growthrate_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_conclusion).
conclusion(study_on_rich_growthrate_conclusion).
has_representation(study_on_rich_growthrate_conclusion,'The knockouts have higher growth rate in rich than the wild type').
text_representation('The knockouts have higher growth rate in rich than the wild type').
has_proposition(study_on_rich_growthrate_conclusion,'obtain statistical mode of study_on_rich_growthrate_result_1').
procedure('obtain statistical mode of study_on_rich_growthrate_result_1').
text_representation('obtain statistical mode of study_on_rich_growthrate_result_1').
has_part(study_of_nutrients_lagtime,trial_of_nutrients_lagtime_c04088).
trial(trial_of_nutrients_lagtime_c04088).
has_agent(trial_of_nutrients_lagtime_c04088,c04088).
metabolite(c04088).
has_proposition(trial_of_nutrients_lagtime_c04088_1,trial_of_nutrients_lagtime_c04088_1_design).
design(trial_of_nutrients_lagtime_c04088_1_design).
has_proposition(trial_of_nutrients_lagtime_c04088_1_design,trial_of_nutrients_lagtime_c04088_1_factor).
factor(trial_of_nutrients_lagtime_c04088_1_factor).
has_representation(trial_of_nutrients_lagtime_c04088_1_factor,'presence or absence of c04088').
has_input(trial_of_nutrients_lagtime_c04088_1,trial_of_nutrients_lagtime_c04088_1_data).
data(trial_of_nutrients_lagtime_c04088_1_data).
has_part(trial_of_nutrients_lagtime_c04088_1_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c04088_1_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c04088_1_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c04088_1,'mar07-trial8_expt001-plate001').
plate('mar07-trial8_expt001-plate001').
has_proposition(trial_of_nutrients_lagtime_c04088_1,trial_of_nutrients_lagtime_c04088_1_result).
result(trial_of_nutrients_lagtime_c04088_1_result).
has_part(trial_of_nutrients_lagtime_c04088_1_result,trial_of_nutrients_lagtime_c04088_1_result_1).
has_representation(trial_of_nutrients_lagtime_c04088_1_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c04088_1_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c04088_1_result_1,trial_of_nutrients_lagtime_c04088_1_result_1_proc).
procedure(trial_of_nutrients_lagtime_c04088_1_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c04088_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c04088_1_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c04088_1_result,trial_of_nutrients_lagtime_c04088_1_result_2).
has_representation(trial_of_nutrients_lagtime_c04088_1_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c04088_1_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c04088_1_result_2,trial_of_nutrients_lagtime_c04088_1_result_2_proc).
procedure(trial_of_nutrients_lagtime_c04088_1_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c04088_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c04088_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c04088,trial_of_nutrients_lagtime_c04088_results).
result(trial_of_nutrients_lagtime_c04088_results).
has_part(trial_of_nutrients_lagtime_c04088_results,trial_of_nutrients_lagtime_c04088_results_1).
has_representation(trial_of_nutrients_lagtime_c04088_results_1,'median of wildtype medians in minimal').
text_representation('median of wildtype medians in minimal').
has_proposition(trial_of_nutrients_lagtime_c04088_results_1,trial_of_nutrients_lagtime_c04088_results_1_proc).
procedure(trial_of_nutrients_lagtime_c04088_results_1_proc).
has_proposition(trial_of_nutrients_lagtime_c04088_results_1_proc,'procedures/remove_dupl_medians_nut.R').
link('procedures/remove_dupl_medians_nut.R').
has_part(trial_of_nutrients_lagtime_c04088_results,trial_of_nutrients_lagtime_c04088_results_2).
has_representation(trial_of_nutrients_lagtime_c04088_results_2,'median of wildtype medians in minimal with metabolite').
text_representation('median of wildtype medians in minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c04088_results_2,trial_of_nutrients_lagtime_c04088_results_2_proc).
procedure(trial_of_nutrients_lagtime_c04088_results_2_proc).
has_proposition(trial_of_nutrients_lagtime_c04088_results_2_proc,'procedures/remove_dupl_medians_nut.R').
link('procedures/remove_dupl_medians_nut.R').
has_part(trial_of_nutrients_lagtime_c04088_results,trial_of_nutrients_lagtime_c04088_results_3).
has_representation(trial_of_nutrients_lagtime_c04088_results_3,'difference between trial_of_nutrients_lagtime_c04088_results_1 and trial_of_nutrients_lagtime_c04088_results_2').
text_representation('difference between trial_of_nutrients_lagtime_c04088_results_1 and trial_of_nutrients_lagtime_c04088_results_2').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_result).
result(study_on_rich_growthrate_result).
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_1).
has_representation(study_on_rich_growthrate_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_rich_growthrate_result_1,'results/wr_kr_growth_rate.csv').
link('results/wr_kr_growth_rate.csv').
has_proposition(study_on_rich_growthrate_result_1,study_on_rich_growthrate_result_1_proc).
procedure(study_on_rich_growthrate_result_1_proc).
has_proposition(study_on_rich_growthrate_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_2).
has_representation(study_on_rich_growthrate_result_2,'bar graph (histogram) plotting study_on_rich_growthrate_result_1').
text_representation('bar graph (histogram) plotting study_on_rich_growthrate_result_1').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate1.tiff').
link('results/kr_wr_growth_rate1.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate2.tiff').
link('results/kr_wr_growth_rate2.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/overlayed_growth_rate.tiff').
link('results/overlayed_growth_rate.tiff').
has_proposition(study_on_rich_growthrate_result_2,study_on_rich_growthrate_result_2_proc).
procedure(study_on_rich_growthrate_result_2_proc).
has_proposition(study_on_rich_growthrate_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_conclusion).
conclusion(study_on_rich_growthrate_conclusion).
has_representation(study_on_rich_growthrate_conclusion,'The knockouts have higher growth rate in rich than the wild type').
text_representation('The knockouts have higher growth rate in rich than the wild type').
has_proposition(study_on_rich_growthrate_conclusion,'obtain statistical mode of study_on_rich_growthrate_result_1').
procedure('obtain statistical mode of study_on_rich_growthrate_result_1').
text_representation('obtain statistical mode of study_on_rich_growthrate_result_1').
has_part(study_of_nutrients_lagtime,trial_of_nutrients_lagtime_c00111).
trial(trial_of_nutrients_lagtime_c00111).
has_agent(trial_of_nutrients_lagtime_c00111,c00111).
metabolite(c00111).
has_proposition(trial_of_nutrients_lagtime_c00111_1,trial_of_nutrients_lagtime_c00111_1_design).
design(trial_of_nutrients_lagtime_c00111_1_design).
has_proposition(trial_of_nutrients_lagtime_c00111_1_design,trial_of_nutrients_lagtime_c00111_1_factor).
factor(trial_of_nutrients_lagtime_c00111_1_factor).
has_representation(trial_of_nutrients_lagtime_c00111_1_factor,'presence or absence of c00111').
has_input(trial_of_nutrients_lagtime_c00111_1,trial_of_nutrients_lagtime_c00111_1_data).
data(trial_of_nutrients_lagtime_c00111_1_data).
has_part(trial_of_nutrients_lagtime_c00111_1_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00111_1_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00111_1_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00111_1,'mar07-trial2_expt001-plate003').
plate('mar07-trial2_expt001-plate003').
has_proposition(trial_of_nutrients_lagtime_c00111_1,trial_of_nutrients_lagtime_c00111_1_result).
result(trial_of_nutrients_lagtime_c00111_1_result).
has_part(trial_of_nutrients_lagtime_c00111_1_result,trial_of_nutrients_lagtime_c00111_1_result_1).
has_representation(trial_of_nutrients_lagtime_c00111_1_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00111_1_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00111_1_result_1,trial_of_nutrients_lagtime_c00111_1_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00111_1_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00111_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00111_1_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00111_1_result,trial_of_nutrients_lagtime_c00111_1_result_2).
has_representation(trial_of_nutrients_lagtime_c00111_1_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00111_1_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00111_1_result_2,trial_of_nutrients_lagtime_c00111_1_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00111_1_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00111_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00111_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00111_2,trial_of_nutrients_lagtime_c00111_2_design).
design(trial_of_nutrients_lagtime_c00111_2_design).
has_proposition(trial_of_nutrients_lagtime_c00111_2_design,trial_of_nutrients_lagtime_c00111_2_factor).
factor(trial_of_nutrients_lagtime_c00111_2_factor).
has_representation(trial_of_nutrients_lagtime_c00111_2_factor,'presence or absence of c00111').
has_input(trial_of_nutrients_lagtime_c00111_2,trial_of_nutrients_lagtime_c00111_2_data).
data(trial_of_nutrients_lagtime_c00111_2_data).
has_part(trial_of_nutrients_lagtime_c00111_2_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00111_2_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00111_2_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00111_2,'mar07-trial5_expt001-plate004').
plate('mar07-trial5_expt001-plate004').
has_proposition(trial_of_nutrients_lagtime_c00111_2,trial_of_nutrients_lagtime_c00111_2_result).
result(trial_of_nutrients_lagtime_c00111_2_result).
has_part(trial_of_nutrients_lagtime_c00111_2_result,trial_of_nutrients_lagtime_c00111_2_result_1).
has_representation(trial_of_nutrients_lagtime_c00111_2_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00111_2_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00111_2_result_1,trial_of_nutrients_lagtime_c00111_2_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00111_2_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00111_2_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00111_2_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00111_2_result,trial_of_nutrients_lagtime_c00111_2_result_2).
has_representation(trial_of_nutrients_lagtime_c00111_2_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00111_2_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00111_2_result_2,trial_of_nutrients_lagtime_c00111_2_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00111_2_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00111_2_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00111_2_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00111,trial_of_nutrients_lagtime_c00111_results).
result(trial_of_nutrients_lagtime_c00111_results).
has_part(trial_of_nutrients_lagtime_c00111_results,trial_of_nutrients_lagtime_c00111_results_1).
has_representation(trial_of_nutrients_lagtime_c00111_results_1,'median of wildtype medians in minimal').
text_representation('median of wildtype medians in minimal').
has_proposition(trial_of_nutrients_lagtime_c00111_results_1,trial_of_nutrients_lagtime_c00111_results_1_proc).
procedure(trial_of_nutrients_lagtime_c00111_results_1_proc).
has_proposition(trial_of_nutrients_lagtime_c00111_results_1_proc,'procedures/remove_dupl_medians_nut.R').
link('procedures/remove_dupl_medians_nut.R').
has_part(trial_of_nutrients_lagtime_c00111_results,trial_of_nutrients_lagtime_c00111_results_2).
has_representation(trial_of_nutrients_lagtime_c00111_results_2,'median of wildtype medians in minimal with metabolite').
text_representation('median of wildtype medians in minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00111_results_2,trial_of_nutrients_lagtime_c00111_results_2_proc).
procedure(trial_of_nutrients_lagtime_c00111_results_2_proc).
has_proposition(trial_of_nutrients_lagtime_c00111_results_2_proc,'procedures/remove_dupl_medians_nut.R').
link('procedures/remove_dupl_medians_nut.R').
has_part(trial_of_nutrients_lagtime_c00111_results,trial_of_nutrients_lagtime_c00111_results_3).
has_representation(trial_of_nutrients_lagtime_c00111_results_3,'difference between trial_of_nutrients_lagtime_c00111_results_1 and trial_of_nutrients_lagtime_c00111_results_2').
text_representation('difference between trial_of_nutrients_lagtime_c00111_results_1 and trial_of_nutrients_lagtime_c00111_results_2').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_result).
result(study_on_rich_growthrate_result).
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_1).
has_representation(study_on_rich_growthrate_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_rich_growthrate_result_1,'results/wr_kr_growth_rate.csv').
link('results/wr_kr_growth_rate.csv').
has_proposition(study_on_rich_growthrate_result_1,study_on_rich_growthrate_result_1_proc).
procedure(study_on_rich_growthrate_result_1_proc).
has_proposition(study_on_rich_growthrate_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_2).
has_representation(study_on_rich_growthrate_result_2,'bar graph (histogram) plotting study_on_rich_growthrate_result_1').
text_representation('bar graph (histogram) plotting study_on_rich_growthrate_result_1').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate1.tiff').
link('results/kr_wr_growth_rate1.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate2.tiff').
link('results/kr_wr_growth_rate2.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/overlayed_growth_rate.tiff').
link('results/overlayed_growth_rate.tiff').
has_proposition(study_on_rich_growthrate_result_2,study_on_rich_growthrate_result_2_proc).
procedure(study_on_rich_growthrate_result_2_proc).
has_proposition(study_on_rich_growthrate_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_conclusion).
conclusion(study_on_rich_growthrate_conclusion).
has_representation(study_on_rich_growthrate_conclusion,'The knockouts have higher growth rate in rich than the wild type').
text_representation('The knockouts have higher growth rate in rich than the wild type').
has_proposition(study_on_rich_growthrate_conclusion,'obtain statistical mode of study_on_rich_growthrate_result_1').
procedure('obtain statistical mode of study_on_rich_growthrate_result_1').
text_representation('obtain statistical mode of study_on_rich_growthrate_result_1').
has_part(study_of_nutrients_lagtime,trial_of_nutrients_lagtime_c00112).
trial(trial_of_nutrients_lagtime_c00112).
has_agent(trial_of_nutrients_lagtime_c00112,c00112).
metabolite(c00112).
has_proposition(trial_of_nutrients_lagtime_c00112_1,trial_of_nutrients_lagtime_c00112_1_design).
design(trial_of_nutrients_lagtime_c00112_1_design).
has_proposition(trial_of_nutrients_lagtime_c00112_1_design,trial_of_nutrients_lagtime_c00112_1_factor).
factor(trial_of_nutrients_lagtime_c00112_1_factor).
has_representation(trial_of_nutrients_lagtime_c00112_1_factor,'presence or absence of c00112').
has_input(trial_of_nutrients_lagtime_c00112_1,trial_of_nutrients_lagtime_c00112_1_data).
data(trial_of_nutrients_lagtime_c00112_1_data).
has_part(trial_of_nutrients_lagtime_c00112_1_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00112_1_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00112_1_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00112_1,'mar07-trial8_expt001-plate006').
plate('mar07-trial8_expt001-plate006').
has_proposition(trial_of_nutrients_lagtime_c00112_1,trial_of_nutrients_lagtime_c00112_1_result).
result(trial_of_nutrients_lagtime_c00112_1_result).
has_part(trial_of_nutrients_lagtime_c00112_1_result,trial_of_nutrients_lagtime_c00112_1_result_1).
has_representation(trial_of_nutrients_lagtime_c00112_1_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00112_1_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00112_1_result_1,trial_of_nutrients_lagtime_c00112_1_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00112_1_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00112_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00112_1_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00112_1_result,trial_of_nutrients_lagtime_c00112_1_result_2).
has_representation(trial_of_nutrients_lagtime_c00112_1_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00112_1_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00112_1_result_2,trial_of_nutrients_lagtime_c00112_1_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00112_1_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00112_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00112_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00112_2,trial_of_nutrients_lagtime_c00112_2_design).
design(trial_of_nutrients_lagtime_c00112_2_design).
has_proposition(trial_of_nutrients_lagtime_c00112_2_design,trial_of_nutrients_lagtime_c00112_2_factor).
factor(trial_of_nutrients_lagtime_c00112_2_factor).
has_representation(trial_of_nutrients_lagtime_c00112_2_factor,'presence or absence of c00112').
has_input(trial_of_nutrients_lagtime_c00112_2,trial_of_nutrients_lagtime_c00112_2_data).
data(trial_of_nutrients_lagtime_c00112_2_data).
has_part(trial_of_nutrients_lagtime_c00112_2_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00112_2_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00112_2_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00112_2,'mar07-trial8_expt001-plate007').
plate('mar07-trial8_expt001-plate007').
has_proposition(trial_of_nutrients_lagtime_c00112_2,trial_of_nutrients_lagtime_c00112_2_result).
result(trial_of_nutrients_lagtime_c00112_2_result).
has_part(trial_of_nutrients_lagtime_c00112_2_result,trial_of_nutrients_lagtime_c00112_2_result_1).
has_representation(trial_of_nutrients_lagtime_c00112_2_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00112_2_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00112_2_result_1,trial_of_nutrients_lagtime_c00112_2_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00112_2_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00112_2_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00112_2_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00112_2_result,trial_of_nutrients_lagtime_c00112_2_result_2).
has_representation(trial_of_nutrients_lagtime_c00112_2_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00112_2_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00112_2_result_2,trial_of_nutrients_lagtime_c00112_2_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00112_2_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00112_2_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00112_2_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00112,trial_of_nutrients_lagtime_c00112_results).
result(trial_of_nutrients_lagtime_c00112_results).
has_part(trial_of_nutrients_lagtime_c00112_results,trial_of_nutrients_lagtime_c00112_results_1).
has_representation(trial_of_nutrients_lagtime_c00112_results_1,'median of wildtype medians in minimal').
text_representation('median of wildtype medians in minimal').
has_proposition(trial_of_nutrients_lagtime_c00112_results_1,trial_of_nutrients_lagtime_c00112_results_1_proc).
procedure(trial_of_nutrients_lagtime_c00112_results_1_proc).
has_proposition(trial_of_nutrients_lagtime_c00112_results_1_proc,'procedures/remove_dupl_medians_nut.R').
link('procedures/remove_dupl_medians_nut.R').
has_part(trial_of_nutrients_lagtime_c00112_results,trial_of_nutrients_lagtime_c00112_results_2).
has_representation(trial_of_nutrients_lagtime_c00112_results_2,'median of wildtype medians in minimal with metabolite').
text_representation('median of wildtype medians in minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00112_results_2,trial_of_nutrients_lagtime_c00112_results_2_proc).
procedure(trial_of_nutrients_lagtime_c00112_results_2_proc).
has_proposition(trial_of_nutrients_lagtime_c00112_results_2_proc,'procedures/remove_dupl_medians_nut.R').
link('procedures/remove_dupl_medians_nut.R').
has_part(trial_of_nutrients_lagtime_c00112_results,trial_of_nutrients_lagtime_c00112_results_3).
has_representation(trial_of_nutrients_lagtime_c00112_results_3,'difference between trial_of_nutrients_lagtime_c00112_results_1 and trial_of_nutrients_lagtime_c00112_results_2').
text_representation('difference between trial_of_nutrients_lagtime_c00112_results_1 and trial_of_nutrients_lagtime_c00112_results_2').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_result).
result(study_on_rich_growthrate_result).
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_1).
has_representation(study_on_rich_growthrate_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_rich_growthrate_result_1,'results/wr_kr_growth_rate.csv').
link('results/wr_kr_growth_rate.csv').
has_proposition(study_on_rich_growthrate_result_1,study_on_rich_growthrate_result_1_proc).
procedure(study_on_rich_growthrate_result_1_proc).
has_proposition(study_on_rich_growthrate_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_2).
has_representation(study_on_rich_growthrate_result_2,'bar graph (histogram) plotting study_on_rich_growthrate_result_1').
text_representation('bar graph (histogram) plotting study_on_rich_growthrate_result_1').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate1.tiff').
link('results/kr_wr_growth_rate1.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate2.tiff').
link('results/kr_wr_growth_rate2.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/overlayed_growth_rate.tiff').
link('results/overlayed_growth_rate.tiff').
has_proposition(study_on_rich_growthrate_result_2,study_on_rich_growthrate_result_2_proc).
procedure(study_on_rich_growthrate_result_2_proc).
has_proposition(study_on_rich_growthrate_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_conclusion).
conclusion(study_on_rich_growthrate_conclusion).
has_representation(study_on_rich_growthrate_conclusion,'The knockouts have higher growth rate in rich than the wild type').
text_representation('The knockouts have higher growth rate in rich than the wild type').
has_proposition(study_on_rich_growthrate_conclusion,'obtain statistical mode of study_on_rich_growthrate_result_1').
procedure('obtain statistical mode of study_on_rich_growthrate_result_1').
text_representation('obtain statistical mode of study_on_rich_growthrate_result_1').
has_part(study_of_nutrients_lagtime,trial_of_nutrients_lagtime_c00073).
trial(trial_of_nutrients_lagtime_c00073).
has_agent(trial_of_nutrients_lagtime_c00073,c00073).
metabolite(c00073).
has_proposition(trial_of_nutrients_lagtime_c00073_1,trial_of_nutrients_lagtime_c00073_1_design).
design(trial_of_nutrients_lagtime_c00073_1_design).
has_proposition(trial_of_nutrients_lagtime_c00073_1_design,trial_of_nutrients_lagtime_c00073_1_factor).
factor(trial_of_nutrients_lagtime_c00073_1_factor).
has_representation(trial_of_nutrients_lagtime_c00073_1_factor,'presence or absence of c00073').
has_input(trial_of_nutrients_lagtime_c00073_1,trial_of_nutrients_lagtime_c00073_1_data).
data(trial_of_nutrients_lagtime_c00073_1_data).
has_part(trial_of_nutrients_lagtime_c00073_1_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00073_1_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00073_1_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00073_1,'feb07-trial1_expt001-plate002').
plate('feb07-trial1_expt001-plate002').
has_proposition(trial_of_nutrients_lagtime_c00073_1,trial_of_nutrients_lagtime_c00073_1_result).
result(trial_of_nutrients_lagtime_c00073_1_result).
has_part(trial_of_nutrients_lagtime_c00073_1_result,trial_of_nutrients_lagtime_c00073_1_result_1).
has_representation(trial_of_nutrients_lagtime_c00073_1_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00073_1_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00073_1_result_1,trial_of_nutrients_lagtime_c00073_1_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00073_1_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00073_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00073_1_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00073_1_result,trial_of_nutrients_lagtime_c00073_1_result_2).
has_representation(trial_of_nutrients_lagtime_c00073_1_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00073_1_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00073_1_result_2,trial_of_nutrients_lagtime_c00073_1_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00073_1_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00073_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00073_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00073,trial_of_nutrients_lagtime_c00073_results).
result(trial_of_nutrients_lagtime_c00073_results).
has_part(trial_of_nutrients_lagtime_c00073_results,trial_of_nutrients_lagtime_c00073_results_1).
has_representation(trial_of_nutrients_lagtime_c00073_results_1,'median of wildtype medians in minimal').
text_representation('median of wildtype medians in minimal').
has_proposition(trial_of_nutrients_lagtime_c00073_results_1,trial_of_nutrients_lagtime_c00073_results_1_proc).
procedure(trial_of_nutrients_lagtime_c00073_results_1_proc).
has_proposition(trial_of_nutrients_lagtime_c00073_results_1_proc,'procedures/remove_dupl_medians_nut.R').
link('procedures/remove_dupl_medians_nut.R').
has_part(trial_of_nutrients_lagtime_c00073_results,trial_of_nutrients_lagtime_c00073_results_2).
has_representation(trial_of_nutrients_lagtime_c00073_results_2,'median of wildtype medians in minimal with metabolite').
text_representation('median of wildtype medians in minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00073_results_2,trial_of_nutrients_lagtime_c00073_results_2_proc).
procedure(trial_of_nutrients_lagtime_c00073_results_2_proc).
has_proposition(trial_of_nutrients_lagtime_c00073_results_2_proc,'procedures/remove_dupl_medians_nut.R').
link('procedures/remove_dupl_medians_nut.R').
has_part(trial_of_nutrients_lagtime_c00073_results,trial_of_nutrients_lagtime_c00073_results_3).
has_representation(trial_of_nutrients_lagtime_c00073_results_3,'difference between trial_of_nutrients_lagtime_c00073_results_1 and trial_of_nutrients_lagtime_c00073_results_2').
text_representation('difference between trial_of_nutrients_lagtime_c00073_results_1 and trial_of_nutrients_lagtime_c00073_results_2').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_result).
result(study_on_rich_growthrate_result).
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_1).
has_representation(study_on_rich_growthrate_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_rich_growthrate_result_1,'results/wr_kr_growth_rate.csv').
link('results/wr_kr_growth_rate.csv').
has_proposition(study_on_rich_growthrate_result_1,study_on_rich_growthrate_result_1_proc).
procedure(study_on_rich_growthrate_result_1_proc).
has_proposition(study_on_rich_growthrate_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_2).
has_representation(study_on_rich_growthrate_result_2,'bar graph (histogram) plotting study_on_rich_growthrate_result_1').
text_representation('bar graph (histogram) plotting study_on_rich_growthrate_result_1').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate1.tiff').
link('results/kr_wr_growth_rate1.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate2.tiff').
link('results/kr_wr_growth_rate2.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/overlayed_growth_rate.tiff').
link('results/overlayed_growth_rate.tiff').
has_proposition(study_on_rich_growthrate_result_2,study_on_rich_growthrate_result_2_proc).
procedure(study_on_rich_growthrate_result_2_proc).
has_proposition(study_on_rich_growthrate_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_conclusion).
conclusion(study_on_rich_growthrate_conclusion).
has_representation(study_on_rich_growthrate_conclusion,'The knockouts have higher growth rate in rich than the wild type').
text_representation('The knockouts have higher growth rate in rich than the wild type').
has_proposition(study_on_rich_growthrate_conclusion,'obtain statistical mode of study_on_rich_growthrate_result_1').
procedure('obtain statistical mode of study_on_rich_growthrate_result_1').
text_representation('obtain statistical mode of study_on_rich_growthrate_result_1').
has_part(study_of_nutrients_lagtime,trial_of_nutrients_lagtime_c00152).
trial(trial_of_nutrients_lagtime_c00152).
has_agent(trial_of_nutrients_lagtime_c00152,c00152).
metabolite(c00152).
has_proposition(trial_of_nutrients_lagtime_c00152_1,trial_of_nutrients_lagtime_c00152_1_design).
design(trial_of_nutrients_lagtime_c00152_1_design).
has_proposition(trial_of_nutrients_lagtime_c00152_1_design,trial_of_nutrients_lagtime_c00152_1_factor).
factor(trial_of_nutrients_lagtime_c00152_1_factor).
has_representation(trial_of_nutrients_lagtime_c00152_1_factor,'presence or absence of c00152').
has_input(trial_of_nutrients_lagtime_c00152_1,trial_of_nutrients_lagtime_c00152_1_data).
data(trial_of_nutrients_lagtime_c00152_1_data).
has_part(trial_of_nutrients_lagtime_c00152_1_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00152_1_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00152_1_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00152_1,'mar07-trial2_expt001-plate006').
plate('mar07-trial2_expt001-plate006').
has_proposition(trial_of_nutrients_lagtime_c00152_1,trial_of_nutrients_lagtime_c00152_1_result).
result(trial_of_nutrients_lagtime_c00152_1_result).
has_part(trial_of_nutrients_lagtime_c00152_1_result,trial_of_nutrients_lagtime_c00152_1_result_1).
has_representation(trial_of_nutrients_lagtime_c00152_1_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00152_1_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00152_1_result_1,trial_of_nutrients_lagtime_c00152_1_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00152_1_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00152_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00152_1_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00152_1_result,trial_of_nutrients_lagtime_c00152_1_result_2).
has_representation(trial_of_nutrients_lagtime_c00152_1_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00152_1_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00152_1_result_2,trial_of_nutrients_lagtime_c00152_1_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00152_1_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00152_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00152_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00152_2,trial_of_nutrients_lagtime_c00152_2_design).
design(trial_of_nutrients_lagtime_c00152_2_design).
has_proposition(trial_of_nutrients_lagtime_c00152_2_design,trial_of_nutrients_lagtime_c00152_2_factor).
factor(trial_of_nutrients_lagtime_c00152_2_factor).
has_representation(trial_of_nutrients_lagtime_c00152_2_factor,'presence or absence of c00152').
has_input(trial_of_nutrients_lagtime_c00152_2,trial_of_nutrients_lagtime_c00152_2_data).
data(trial_of_nutrients_lagtime_c00152_2_data).
has_part(trial_of_nutrients_lagtime_c00152_2_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00152_2_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00152_2_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00152_2,'mar07-trial5_expt001-plate003').
plate('mar07-trial5_expt001-plate003').
has_proposition(trial_of_nutrients_lagtime_c00152_2,trial_of_nutrients_lagtime_c00152_2_result).
result(trial_of_nutrients_lagtime_c00152_2_result).
has_part(trial_of_nutrients_lagtime_c00152_2_result,trial_of_nutrients_lagtime_c00152_2_result_1).
has_representation(trial_of_nutrients_lagtime_c00152_2_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00152_2_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00152_2_result_1,trial_of_nutrients_lagtime_c00152_2_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00152_2_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00152_2_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00152_2_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00152_2_result,trial_of_nutrients_lagtime_c00152_2_result_2).
has_representation(trial_of_nutrients_lagtime_c00152_2_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00152_2_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00152_2_result_2,trial_of_nutrients_lagtime_c00152_2_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00152_2_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00152_2_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00152_2_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00152,trial_of_nutrients_lagtime_c00152_results).
result(trial_of_nutrients_lagtime_c00152_results).
has_part(trial_of_nutrients_lagtime_c00152_results,trial_of_nutrients_lagtime_c00152_results_1).
has_representation(trial_of_nutrients_lagtime_c00152_results_1,'median of wildtype medians in minimal').
text_representation('median of wildtype medians in minimal').
has_proposition(trial_of_nutrients_lagtime_c00152_results_1,trial_of_nutrients_lagtime_c00152_results_1_proc).
procedure(trial_of_nutrients_lagtime_c00152_results_1_proc).
has_proposition(trial_of_nutrients_lagtime_c00152_results_1_proc,'procedures/remove_dupl_medians_nut.R').
link('procedures/remove_dupl_medians_nut.R').
has_part(trial_of_nutrients_lagtime_c00152_results,trial_of_nutrients_lagtime_c00152_results_2).
has_representation(trial_of_nutrients_lagtime_c00152_results_2,'median of wildtype medians in minimal with metabolite').
text_representation('median of wildtype medians in minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00152_results_2,trial_of_nutrients_lagtime_c00152_results_2_proc).
procedure(trial_of_nutrients_lagtime_c00152_results_2_proc).
has_proposition(trial_of_nutrients_lagtime_c00152_results_2_proc,'procedures/remove_dupl_medians_nut.R').
link('procedures/remove_dupl_medians_nut.R').
has_part(trial_of_nutrients_lagtime_c00152_results,trial_of_nutrients_lagtime_c00152_results_3).
has_representation(trial_of_nutrients_lagtime_c00152_results_3,'difference between trial_of_nutrients_lagtime_c00152_results_1 and trial_of_nutrients_lagtime_c00152_results_2').
text_representation('difference between trial_of_nutrients_lagtime_c00152_results_1 and trial_of_nutrients_lagtime_c00152_results_2').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_result).
result(study_on_rich_growthrate_result).
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_1).
has_representation(study_on_rich_growthrate_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_rich_growthrate_result_1,'results/wr_kr_growth_rate.csv').
link('results/wr_kr_growth_rate.csv').
has_proposition(study_on_rich_growthrate_result_1,study_on_rich_growthrate_result_1_proc).
procedure(study_on_rich_growthrate_result_1_proc).
has_proposition(study_on_rich_growthrate_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_2).
has_representation(study_on_rich_growthrate_result_2,'bar graph (histogram) plotting study_on_rich_growthrate_result_1').
text_representation('bar graph (histogram) plotting study_on_rich_growthrate_result_1').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate1.tiff').
link('results/kr_wr_growth_rate1.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate2.tiff').
link('results/kr_wr_growth_rate2.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/overlayed_growth_rate.tiff').
link('results/overlayed_growth_rate.tiff').
has_proposition(study_on_rich_growthrate_result_2,study_on_rich_growthrate_result_2_proc).
procedure(study_on_rich_growthrate_result_2_proc).
has_proposition(study_on_rich_growthrate_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_conclusion).
conclusion(study_on_rich_growthrate_conclusion).
has_representation(study_on_rich_growthrate_conclusion,'The knockouts have higher growth rate in rich than the wild type').
text_representation('The knockouts have higher growth rate in rich than the wild type').
has_proposition(study_on_rich_growthrate_conclusion,'obtain statistical mode of study_on_rich_growthrate_result_1').
procedure('obtain statistical mode of study_on_rich_growthrate_result_1').
text_representation('obtain statistical mode of study_on_rich_growthrate_result_1').
has_part(study_of_nutrients_lagtime,trial_of_nutrients_lagtime_c00352).
trial(trial_of_nutrients_lagtime_c00352).
has_agent(trial_of_nutrients_lagtime_c00352,c00352).
metabolite(c00352).
has_proposition(trial_of_nutrients_lagtime_c00352_1,trial_of_nutrients_lagtime_c00352_1_design).
design(trial_of_nutrients_lagtime_c00352_1_design).
has_proposition(trial_of_nutrients_lagtime_c00352_1_design,trial_of_nutrients_lagtime_c00352_1_factor).
factor(trial_of_nutrients_lagtime_c00352_1_factor).
has_representation(trial_of_nutrients_lagtime_c00352_1_factor,'presence or absence of c00352').
has_input(trial_of_nutrients_lagtime_c00352_1,trial_of_nutrients_lagtime_c00352_1_data).
data(trial_of_nutrients_lagtime_c00352_1_data).
has_part(trial_of_nutrients_lagtime_c00352_1_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00352_1_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00352_1_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00352_1,'mar07-trial2_expt001-plate005').
plate('mar07-trial2_expt001-plate005').
has_proposition(trial_of_nutrients_lagtime_c00352_1,trial_of_nutrients_lagtime_c00352_1_result).
result(trial_of_nutrients_lagtime_c00352_1_result).
has_part(trial_of_nutrients_lagtime_c00352_1_result,trial_of_nutrients_lagtime_c00352_1_result_1).
has_representation(trial_of_nutrients_lagtime_c00352_1_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00352_1_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00352_1_result_1,trial_of_nutrients_lagtime_c00352_1_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00352_1_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00352_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00352_1_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00352_1_result,trial_of_nutrients_lagtime_c00352_1_result_2).
has_representation(trial_of_nutrients_lagtime_c00352_1_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00352_1_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00352_1_result_2,trial_of_nutrients_lagtime_c00352_1_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00352_1_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00352_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00352_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00352_2,trial_of_nutrients_lagtime_c00352_2_design).
design(trial_of_nutrients_lagtime_c00352_2_design).
has_proposition(trial_of_nutrients_lagtime_c00352_2_design,trial_of_nutrients_lagtime_c00352_2_factor).
factor(trial_of_nutrients_lagtime_c00352_2_factor).
has_representation(trial_of_nutrients_lagtime_c00352_2_factor,'presence or absence of c00352').
has_input(trial_of_nutrients_lagtime_c00352_2,trial_of_nutrients_lagtime_c00352_2_data).
data(trial_of_nutrients_lagtime_c00352_2_data).
has_part(trial_of_nutrients_lagtime_c00352_2_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00352_2_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00352_2_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00352_2,'mar07-trial5_expt001-plate002').
plate('mar07-trial5_expt001-plate002').
has_proposition(trial_of_nutrients_lagtime_c00352_2,trial_of_nutrients_lagtime_c00352_2_result).
result(trial_of_nutrients_lagtime_c00352_2_result).
has_part(trial_of_nutrients_lagtime_c00352_2_result,trial_of_nutrients_lagtime_c00352_2_result_1).
has_representation(trial_of_nutrients_lagtime_c00352_2_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00352_2_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00352_2_result_1,trial_of_nutrients_lagtime_c00352_2_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00352_2_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00352_2_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00352_2_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00352_2_result,trial_of_nutrients_lagtime_c00352_2_result_2).
has_representation(trial_of_nutrients_lagtime_c00352_2_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00352_2_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00352_2_result_2,trial_of_nutrients_lagtime_c00352_2_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00352_2_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00352_2_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00352_2_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00352,trial_of_nutrients_lagtime_c00352_results).
result(trial_of_nutrients_lagtime_c00352_results).
has_part(trial_of_nutrients_lagtime_c00352_results,trial_of_nutrients_lagtime_c00352_results_1).
has_representation(trial_of_nutrients_lagtime_c00352_results_1,'median of wildtype medians in minimal').
text_representation('median of wildtype medians in minimal').
has_proposition(trial_of_nutrients_lagtime_c00352_results_1,trial_of_nutrients_lagtime_c00352_results_1_proc).
procedure(trial_of_nutrients_lagtime_c00352_results_1_proc).
has_proposition(trial_of_nutrients_lagtime_c00352_results_1_proc,'procedures/remove_dupl_medians_nut.R').
link('procedures/remove_dupl_medians_nut.R').
has_part(trial_of_nutrients_lagtime_c00352_results,trial_of_nutrients_lagtime_c00352_results_2).
has_representation(trial_of_nutrients_lagtime_c00352_results_2,'median of wildtype medians in minimal with metabolite').
text_representation('median of wildtype medians in minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00352_results_2,trial_of_nutrients_lagtime_c00352_results_2_proc).
procedure(trial_of_nutrients_lagtime_c00352_results_2_proc).
has_proposition(trial_of_nutrients_lagtime_c00352_results_2_proc,'procedures/remove_dupl_medians_nut.R').
link('procedures/remove_dupl_medians_nut.R').
has_part(trial_of_nutrients_lagtime_c00352_results,trial_of_nutrients_lagtime_c00352_results_3).
has_representation(trial_of_nutrients_lagtime_c00352_results_3,'difference between trial_of_nutrients_lagtime_c00352_results_1 and trial_of_nutrients_lagtime_c00352_results_2').
text_representation('difference between trial_of_nutrients_lagtime_c00352_results_1 and trial_of_nutrients_lagtime_c00352_results_2').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_result).
result(study_on_rich_growthrate_result).
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_1).
has_representation(study_on_rich_growthrate_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_rich_growthrate_result_1,'results/wr_kr_growth_rate.csv').
link('results/wr_kr_growth_rate.csv').
has_proposition(study_on_rich_growthrate_result_1,study_on_rich_growthrate_result_1_proc).
procedure(study_on_rich_growthrate_result_1_proc).
has_proposition(study_on_rich_growthrate_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_2).
has_representation(study_on_rich_growthrate_result_2,'bar graph (histogram) plotting study_on_rich_growthrate_result_1').
text_representation('bar graph (histogram) plotting study_on_rich_growthrate_result_1').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate1.tiff').
link('results/kr_wr_growth_rate1.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate2.tiff').
link('results/kr_wr_growth_rate2.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/overlayed_growth_rate.tiff').
link('results/overlayed_growth_rate.tiff').
has_proposition(study_on_rich_growthrate_result_2,study_on_rich_growthrate_result_2_proc).
procedure(study_on_rich_growthrate_result_2_proc).
has_proposition(study_on_rich_growthrate_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_conclusion).
conclusion(study_on_rich_growthrate_conclusion).
has_representation(study_on_rich_growthrate_conclusion,'The knockouts have higher growth rate in rich than the wild type').
text_representation('The knockouts have higher growth rate in rich than the wild type').
has_proposition(study_on_rich_growthrate_conclusion,'obtain statistical mode of study_on_rich_growthrate_result_1').
procedure('obtain statistical mode of study_on_rich_growthrate_result_1').
text_representation('obtain statistical mode of study_on_rich_growthrate_result_1').
has_part(study_of_nutrients_lagtime,trial_of_nutrients_lagtime_c00157).
trial(trial_of_nutrients_lagtime_c00157).
has_agent(trial_of_nutrients_lagtime_c00157,c00157).
metabolite(c00157).
has_proposition(trial_of_nutrients_lagtime_c00157_1,trial_of_nutrients_lagtime_c00157_1_design).
design(trial_of_nutrients_lagtime_c00157_1_design).
has_proposition(trial_of_nutrients_lagtime_c00157_1_design,trial_of_nutrients_lagtime_c00157_1_factor).
factor(trial_of_nutrients_lagtime_c00157_1_factor).
has_representation(trial_of_nutrients_lagtime_c00157_1_factor,'presence or absence of c00157').
has_input(trial_of_nutrients_lagtime_c00157_1,trial_of_nutrients_lagtime_c00157_1_data).
data(trial_of_nutrients_lagtime_c00157_1_data).
has_part(trial_of_nutrients_lagtime_c00157_1_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00157_1_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00157_1_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00157_1,'mar07-trial7_expt001-plate007').
plate('mar07-trial7_expt001-plate007').
has_proposition(trial_of_nutrients_lagtime_c00157_1,trial_of_nutrients_lagtime_c00157_1_result).
result(trial_of_nutrients_lagtime_c00157_1_result).
has_part(trial_of_nutrients_lagtime_c00157_1_result,trial_of_nutrients_lagtime_c00157_1_result_1).
has_representation(trial_of_nutrients_lagtime_c00157_1_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00157_1_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00157_1_result_1,trial_of_nutrients_lagtime_c00157_1_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00157_1_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00157_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00157_1_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00157_1_result,trial_of_nutrients_lagtime_c00157_1_result_2).
has_representation(trial_of_nutrients_lagtime_c00157_1_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00157_1_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00157_1_result_2,trial_of_nutrients_lagtime_c00157_1_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00157_1_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00157_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00157_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00157,trial_of_nutrients_lagtime_c00157_results).
result(trial_of_nutrients_lagtime_c00157_results).
has_part(trial_of_nutrients_lagtime_c00157_results,trial_of_nutrients_lagtime_c00157_results_1).
has_representation(trial_of_nutrients_lagtime_c00157_results_1,'median of wildtype medians in minimal').
text_representation('median of wildtype medians in minimal').
has_proposition(trial_of_nutrients_lagtime_c00157_results_1,trial_of_nutrients_lagtime_c00157_results_1_proc).
procedure(trial_of_nutrients_lagtime_c00157_results_1_proc).
has_proposition(trial_of_nutrients_lagtime_c00157_results_1_proc,'procedures/remove_dupl_medians_nut.R').
link('procedures/remove_dupl_medians_nut.R').
has_part(trial_of_nutrients_lagtime_c00157_results,trial_of_nutrients_lagtime_c00157_results_2).
has_representation(trial_of_nutrients_lagtime_c00157_results_2,'median of wildtype medians in minimal with metabolite').
text_representation('median of wildtype medians in minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00157_results_2,trial_of_nutrients_lagtime_c00157_results_2_proc).
procedure(trial_of_nutrients_lagtime_c00157_results_2_proc).
has_proposition(trial_of_nutrients_lagtime_c00157_results_2_proc,'procedures/remove_dupl_medians_nut.R').
link('procedures/remove_dupl_medians_nut.R').
has_part(trial_of_nutrients_lagtime_c00157_results,trial_of_nutrients_lagtime_c00157_results_3).
has_representation(trial_of_nutrients_lagtime_c00157_results_3,'difference between trial_of_nutrients_lagtime_c00157_results_1 and trial_of_nutrients_lagtime_c00157_results_2').
text_representation('difference between trial_of_nutrients_lagtime_c00157_results_1 and trial_of_nutrients_lagtime_c00157_results_2').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_result).
result(study_on_rich_growthrate_result).
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_1).
has_representation(study_on_rich_growthrate_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_rich_growthrate_result_1,'results/wr_kr_growth_rate.csv').
link('results/wr_kr_growth_rate.csv').
has_proposition(study_on_rich_growthrate_result_1,study_on_rich_growthrate_result_1_proc).
procedure(study_on_rich_growthrate_result_1_proc).
has_proposition(study_on_rich_growthrate_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_2).
has_representation(study_on_rich_growthrate_result_2,'bar graph (histogram) plotting study_on_rich_growthrate_result_1').
text_representation('bar graph (histogram) plotting study_on_rich_growthrate_result_1').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate1.tiff').
link('results/kr_wr_growth_rate1.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate2.tiff').
link('results/kr_wr_growth_rate2.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/overlayed_growth_rate.tiff').
link('results/overlayed_growth_rate.tiff').
has_proposition(study_on_rich_growthrate_result_2,study_on_rich_growthrate_result_2_proc).
procedure(study_on_rich_growthrate_result_2_proc).
has_proposition(study_on_rich_growthrate_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_conclusion).
conclusion(study_on_rich_growthrate_conclusion).
has_representation(study_on_rich_growthrate_conclusion,'The knockouts have higher growth rate in rich than the wild type').
text_representation('The knockouts have higher growth rate in rich than the wild type').
has_proposition(study_on_rich_growthrate_conclusion,'obtain statistical mode of study_on_rich_growthrate_result_1').
procedure('obtain statistical mode of study_on_rich_growthrate_result_1').
text_representation('obtain statistical mode of study_on_rich_growthrate_result_1').
has_part(study_of_nutrients_lagtime,trial_of_nutrients_lagtime_c00147).
trial(trial_of_nutrients_lagtime_c00147).
has_agent(trial_of_nutrients_lagtime_c00147,c00147).
metabolite(c00147).
has_proposition(trial_of_nutrients_lagtime_c00147_1,trial_of_nutrients_lagtime_c00147_1_design).
design(trial_of_nutrients_lagtime_c00147_1_design).
has_proposition(trial_of_nutrients_lagtime_c00147_1_design,trial_of_nutrients_lagtime_c00147_1_factor).
factor(trial_of_nutrients_lagtime_c00147_1_factor).
has_representation(trial_of_nutrients_lagtime_c00147_1_factor,'presence or absence of c00147').
has_input(trial_of_nutrients_lagtime_c00147_1,trial_of_nutrients_lagtime_c00147_1_data).
data(trial_of_nutrients_lagtime_c00147_1_data).
has_part(trial_of_nutrients_lagtime_c00147_1_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00147_1_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00147_1_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00147_1,'jan07-trial1_expt001-plate007').
plate('jan07-trial1_expt001-plate007').
has_proposition(trial_of_nutrients_lagtime_c00147_1,trial_of_nutrients_lagtime_c00147_1_result).
result(trial_of_nutrients_lagtime_c00147_1_result).
has_part(trial_of_nutrients_lagtime_c00147_1_result,trial_of_nutrients_lagtime_c00147_1_result_1).
has_representation(trial_of_nutrients_lagtime_c00147_1_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00147_1_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00147_1_result_1,trial_of_nutrients_lagtime_c00147_1_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00147_1_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00147_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00147_1_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00147_1_result,trial_of_nutrients_lagtime_c00147_1_result_2).
has_representation(trial_of_nutrients_lagtime_c00147_1_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00147_1_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00147_1_result_2,trial_of_nutrients_lagtime_c00147_1_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00147_1_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00147_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00147_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00147,trial_of_nutrients_lagtime_c00147_results).
result(trial_of_nutrients_lagtime_c00147_results).
has_part(trial_of_nutrients_lagtime_c00147_results,trial_of_nutrients_lagtime_c00147_results_1).
has_representation(trial_of_nutrients_lagtime_c00147_results_1,'median of wildtype medians in minimal').
text_representation('median of wildtype medians in minimal').
has_proposition(trial_of_nutrients_lagtime_c00147_results_1,trial_of_nutrients_lagtime_c00147_results_1_proc).
procedure(trial_of_nutrients_lagtime_c00147_results_1_proc).
has_proposition(trial_of_nutrients_lagtime_c00147_results_1_proc,'procedures/remove_dupl_medians_nut.R').
link('procedures/remove_dupl_medians_nut.R').
has_part(trial_of_nutrients_lagtime_c00147_results,trial_of_nutrients_lagtime_c00147_results_2).
has_representation(trial_of_nutrients_lagtime_c00147_results_2,'median of wildtype medians in minimal with metabolite').
text_representation('median of wildtype medians in minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00147_results_2,trial_of_nutrients_lagtime_c00147_results_2_proc).
procedure(trial_of_nutrients_lagtime_c00147_results_2_proc).
has_proposition(trial_of_nutrients_lagtime_c00147_results_2_proc,'procedures/remove_dupl_medians_nut.R').
link('procedures/remove_dupl_medians_nut.R').
has_part(trial_of_nutrients_lagtime_c00147_results,trial_of_nutrients_lagtime_c00147_results_3).
has_representation(trial_of_nutrients_lagtime_c00147_results_3,'difference between trial_of_nutrients_lagtime_c00147_results_1 and trial_of_nutrients_lagtime_c00147_results_2').
text_representation('difference between trial_of_nutrients_lagtime_c00147_results_1 and trial_of_nutrients_lagtime_c00147_results_2').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_result).
result(study_on_rich_growthrate_result).
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_1).
has_representation(study_on_rich_growthrate_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_rich_growthrate_result_1,'results/wr_kr_growth_rate.csv').
link('results/wr_kr_growth_rate.csv').
has_proposition(study_on_rich_growthrate_result_1,study_on_rich_growthrate_result_1_proc).
procedure(study_on_rich_growthrate_result_1_proc).
has_proposition(study_on_rich_growthrate_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_2).
has_representation(study_on_rich_growthrate_result_2,'bar graph (histogram) plotting study_on_rich_growthrate_result_1').
text_representation('bar graph (histogram) plotting study_on_rich_growthrate_result_1').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate1.tiff').
link('results/kr_wr_growth_rate1.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate2.tiff').
link('results/kr_wr_growth_rate2.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/overlayed_growth_rate.tiff').
link('results/overlayed_growth_rate.tiff').
has_proposition(study_on_rich_growthrate_result_2,study_on_rich_growthrate_result_2_proc).
procedure(study_on_rich_growthrate_result_2_proc).
has_proposition(study_on_rich_growthrate_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_conclusion).
conclusion(study_on_rich_growthrate_conclusion).
has_representation(study_on_rich_growthrate_conclusion,'The knockouts have higher growth rate in rich than the wild type').
text_representation('The knockouts have higher growth rate in rich than the wild type').
has_proposition(study_on_rich_growthrate_conclusion,'obtain statistical mode of study_on_rich_growthrate_result_1').
procedure('obtain statistical mode of study_on_rich_growthrate_result_1').
text_representation('obtain statistical mode of study_on_rich_growthrate_result_1').
has_part(study_of_nutrients_lagtime,trial_of_nutrients_lagtime_c00979).
trial(trial_of_nutrients_lagtime_c00979).
has_agent(trial_of_nutrients_lagtime_c00979,c00979).
metabolite(c00979).
has_proposition(trial_of_nutrients_lagtime_c00979_1,trial_of_nutrients_lagtime_c00979_1_design).
design(trial_of_nutrients_lagtime_c00979_1_design).
has_proposition(trial_of_nutrients_lagtime_c00979_1_design,trial_of_nutrients_lagtime_c00979_1_factor).
factor(trial_of_nutrients_lagtime_c00979_1_factor).
has_representation(trial_of_nutrients_lagtime_c00979_1_factor,'presence or absence of c00979').
has_input(trial_of_nutrients_lagtime_c00979_1,trial_of_nutrients_lagtime_c00979_1_data).
data(trial_of_nutrients_lagtime_c00979_1_data).
has_part(trial_of_nutrients_lagtime_c00979_1_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00979_1_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00979_1_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00979_1,'mar07-trial1_expt001-plate001').
plate('mar07-trial1_expt001-plate001').
has_proposition(trial_of_nutrients_lagtime_c00979_1,trial_of_nutrients_lagtime_c00979_1_result).
result(trial_of_nutrients_lagtime_c00979_1_result).
has_part(trial_of_nutrients_lagtime_c00979_1_result,trial_of_nutrients_lagtime_c00979_1_result_1).
has_representation(trial_of_nutrients_lagtime_c00979_1_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00979_1_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00979_1_result_1,trial_of_nutrients_lagtime_c00979_1_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00979_1_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00979_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00979_1_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00979_1_result,trial_of_nutrients_lagtime_c00979_1_result_2).
has_representation(trial_of_nutrients_lagtime_c00979_1_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00979_1_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00979_1_result_2,trial_of_nutrients_lagtime_c00979_1_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00979_1_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00979_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00979_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00979,trial_of_nutrients_lagtime_c00979_results).
result(trial_of_nutrients_lagtime_c00979_results).
has_part(trial_of_nutrients_lagtime_c00979_results,trial_of_nutrients_lagtime_c00979_results_1).
has_representation(trial_of_nutrients_lagtime_c00979_results_1,'median of wildtype medians in minimal').
text_representation('median of wildtype medians in minimal').
has_proposition(trial_of_nutrients_lagtime_c00979_results_1,trial_of_nutrients_lagtime_c00979_results_1_proc).
procedure(trial_of_nutrients_lagtime_c00979_results_1_proc).
has_proposition(trial_of_nutrients_lagtime_c00979_results_1_proc,'procedures/remove_dupl_medians_nut.R').
link('procedures/remove_dupl_medians_nut.R').
has_part(trial_of_nutrients_lagtime_c00979_results,trial_of_nutrients_lagtime_c00979_results_2).
has_representation(trial_of_nutrients_lagtime_c00979_results_2,'median of wildtype medians in minimal with metabolite').
text_representation('median of wildtype medians in minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00979_results_2,trial_of_nutrients_lagtime_c00979_results_2_proc).
procedure(trial_of_nutrients_lagtime_c00979_results_2_proc).
has_proposition(trial_of_nutrients_lagtime_c00979_results_2_proc,'procedures/remove_dupl_medians_nut.R').
link('procedures/remove_dupl_medians_nut.R').
has_part(trial_of_nutrients_lagtime_c00979_results,trial_of_nutrients_lagtime_c00979_results_3).
has_representation(trial_of_nutrients_lagtime_c00979_results_3,'difference between trial_of_nutrients_lagtime_c00979_results_1 and trial_of_nutrients_lagtime_c00979_results_2').
text_representation('difference between trial_of_nutrients_lagtime_c00979_results_1 and trial_of_nutrients_lagtime_c00979_results_2').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_result).
result(study_on_rich_growthrate_result).
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_1).
has_representation(study_on_rich_growthrate_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_rich_growthrate_result_1,'results/wr_kr_growth_rate.csv').
link('results/wr_kr_growth_rate.csv').
has_proposition(study_on_rich_growthrate_result_1,study_on_rich_growthrate_result_1_proc).
procedure(study_on_rich_growthrate_result_1_proc).
has_proposition(study_on_rich_growthrate_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_2).
has_representation(study_on_rich_growthrate_result_2,'bar graph (histogram) plotting study_on_rich_growthrate_result_1').
text_representation('bar graph (histogram) plotting study_on_rich_growthrate_result_1').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate1.tiff').
link('results/kr_wr_growth_rate1.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate2.tiff').
link('results/kr_wr_growth_rate2.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/overlayed_growth_rate.tiff').
link('results/overlayed_growth_rate.tiff').
has_proposition(study_on_rich_growthrate_result_2,study_on_rich_growthrate_result_2_proc).
procedure(study_on_rich_growthrate_result_2_proc).
has_proposition(study_on_rich_growthrate_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_conclusion).
conclusion(study_on_rich_growthrate_conclusion).
has_representation(study_on_rich_growthrate_conclusion,'The knockouts have higher growth rate in rich than the wild type').
text_representation('The knockouts have higher growth rate in rich than the wild type').
has_proposition(study_on_rich_growthrate_conclusion,'obtain statistical mode of study_on_rich_growthrate_result_1').
procedure('obtain statistical mode of study_on_rich_growthrate_result_1').
text_representation('obtain statistical mode of study_on_rich_growthrate_result_1').
has_part(study_of_nutrients_lagtime,trial_of_nutrients_lagtime_c00956).
trial(trial_of_nutrients_lagtime_c00956).
has_agent(trial_of_nutrients_lagtime_c00956,c00956).
metabolite(c00956).
has_proposition(trial_of_nutrients_lagtime_c00956_1,trial_of_nutrients_lagtime_c00956_1_design).
design(trial_of_nutrients_lagtime_c00956_1_design).
has_proposition(trial_of_nutrients_lagtime_c00956_1_design,trial_of_nutrients_lagtime_c00956_1_factor).
factor(trial_of_nutrients_lagtime_c00956_1_factor).
has_representation(trial_of_nutrients_lagtime_c00956_1_factor,'presence or absence of c00956').
has_input(trial_of_nutrients_lagtime_c00956_1,trial_of_nutrients_lagtime_c00956_1_data).
data(trial_of_nutrients_lagtime_c00956_1_data).
has_part(trial_of_nutrients_lagtime_c00956_1_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00956_1_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00956_1_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00956_1,'jan07-lysd1_expt001-plate001').
plate('jan07-lysd1_expt001-plate001').
has_proposition(trial_of_nutrients_lagtime_c00956_1,trial_of_nutrients_lagtime_c00956_1_result).
result(trial_of_nutrients_lagtime_c00956_1_result).
has_part(trial_of_nutrients_lagtime_c00956_1_result,trial_of_nutrients_lagtime_c00956_1_result_1).
has_representation(trial_of_nutrients_lagtime_c00956_1_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00956_1_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00956_1_result_1,trial_of_nutrients_lagtime_c00956_1_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00956_1_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00956_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00956_1_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00956_1_result,trial_of_nutrients_lagtime_c00956_1_result_2).
has_representation(trial_of_nutrients_lagtime_c00956_1_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00956_1_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00956_1_result_2,trial_of_nutrients_lagtime_c00956_1_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00956_1_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00956_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00956_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00956_2,trial_of_nutrients_lagtime_c00956_2_design).
design(trial_of_nutrients_lagtime_c00956_2_design).
has_proposition(trial_of_nutrients_lagtime_c00956_2_design,trial_of_nutrients_lagtime_c00956_2_factor).
factor(trial_of_nutrients_lagtime_c00956_2_factor).
has_representation(trial_of_nutrients_lagtime_c00956_2_factor,'presence or absence of c00956').
has_input(trial_of_nutrients_lagtime_c00956_2,trial_of_nutrients_lagtime_c00956_2_data).
data(trial_of_nutrients_lagtime_c00956_2_data).
has_part(trial_of_nutrients_lagtime_c00956_2_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00956_2_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00956_2_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00956_2,'jan07-lysd1_expt001-plate004').
plate('jan07-lysd1_expt001-plate004').
has_proposition(trial_of_nutrients_lagtime_c00956_2,trial_of_nutrients_lagtime_c00956_2_result).
result(trial_of_nutrients_lagtime_c00956_2_result).
has_part(trial_of_nutrients_lagtime_c00956_2_result,trial_of_nutrients_lagtime_c00956_2_result_1).
has_representation(trial_of_nutrients_lagtime_c00956_2_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00956_2_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00956_2_result_1,trial_of_nutrients_lagtime_c00956_2_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00956_2_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00956_2_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00956_2_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00956_2_result,trial_of_nutrients_lagtime_c00956_2_result_2).
has_representation(trial_of_nutrients_lagtime_c00956_2_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00956_2_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00956_2_result_2,trial_of_nutrients_lagtime_c00956_2_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00956_2_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00956_2_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00956_2_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00956_3,trial_of_nutrients_lagtime_c00956_3_design).
design(trial_of_nutrients_lagtime_c00956_3_design).
has_proposition(trial_of_nutrients_lagtime_c00956_3_design,trial_of_nutrients_lagtime_c00956_3_factor).
factor(trial_of_nutrients_lagtime_c00956_3_factor).
has_representation(trial_of_nutrients_lagtime_c00956_3_factor,'presence or absence of c00956').
has_input(trial_of_nutrients_lagtime_c00956_3,trial_of_nutrients_lagtime_c00956_3_data).
data(trial_of_nutrients_lagtime_c00956_3_data).
has_part(trial_of_nutrients_lagtime_c00956_3_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00956_3_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00956_3_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00956_3,'jan07-lyss1_expt001-plate001').
plate('jan07-lyss1_expt001-plate001').
has_proposition(trial_of_nutrients_lagtime_c00956_3,trial_of_nutrients_lagtime_c00956_3_result).
result(trial_of_nutrients_lagtime_c00956_3_result).
has_part(trial_of_nutrients_lagtime_c00956_3_result,trial_of_nutrients_lagtime_c00956_3_result_1).
has_representation(trial_of_nutrients_lagtime_c00956_3_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00956_3_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00956_3_result_1,trial_of_nutrients_lagtime_c00956_3_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00956_3_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00956_3_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00956_3_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00956_3_result,trial_of_nutrients_lagtime_c00956_3_result_2).
has_representation(trial_of_nutrients_lagtime_c00956_3_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00956_3_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00956_3_result_2,trial_of_nutrients_lagtime_c00956_3_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00956_3_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00956_3_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00956_3_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00956_4,trial_of_nutrients_lagtime_c00956_4_design).
design(trial_of_nutrients_lagtime_c00956_4_design).
has_proposition(trial_of_nutrients_lagtime_c00956_4_design,trial_of_nutrients_lagtime_c00956_4_factor).
factor(trial_of_nutrients_lagtime_c00956_4_factor).
has_representation(trial_of_nutrients_lagtime_c00956_4_factor,'presence or absence of c00956').
has_input(trial_of_nutrients_lagtime_c00956_4,trial_of_nutrients_lagtime_c00956_4_data).
data(trial_of_nutrients_lagtime_c00956_4_data).
has_part(trial_of_nutrients_lagtime_c00956_4_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00956_4_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00956_4_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00956_4,'jan07-lyss1_expt001-plate004').
plate('jan07-lyss1_expt001-plate004').
has_proposition(trial_of_nutrients_lagtime_c00956_4,trial_of_nutrients_lagtime_c00956_4_result).
result(trial_of_nutrients_lagtime_c00956_4_result).
has_part(trial_of_nutrients_lagtime_c00956_4_result,trial_of_nutrients_lagtime_c00956_4_result_1).
has_representation(trial_of_nutrients_lagtime_c00956_4_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00956_4_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00956_4_result_1,trial_of_nutrients_lagtime_c00956_4_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00956_4_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00956_4_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00956_4_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00956_4_result,trial_of_nutrients_lagtime_c00956_4_result_2).
has_representation(trial_of_nutrients_lagtime_c00956_4_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00956_4_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00956_4_result_2,trial_of_nutrients_lagtime_c00956_4_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00956_4_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00956_4_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00956_4_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00956_5,trial_of_nutrients_lagtime_c00956_5_design).
design(trial_of_nutrients_lagtime_c00956_5_design).
has_proposition(trial_of_nutrients_lagtime_c00956_5_design,trial_of_nutrients_lagtime_c00956_5_factor).
factor(trial_of_nutrients_lagtime_c00956_5_factor).
has_representation(trial_of_nutrients_lagtime_c00956_5_factor,'presence or absence of c00956').
has_input(trial_of_nutrients_lagtime_c00956_5,trial_of_nutrients_lagtime_c00956_5_data).
data(trial_of_nutrients_lagtime_c00956_5_data).
has_part(trial_of_nutrients_lagtime_c00956_5_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00956_5_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00956_5_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00956_5,'jan07-lyss1_expt001-plate007').
plate('jan07-lyss1_expt001-plate007').
has_proposition(trial_of_nutrients_lagtime_c00956_5,trial_of_nutrients_lagtime_c00956_5_result).
result(trial_of_nutrients_lagtime_c00956_5_result).
has_part(trial_of_nutrients_lagtime_c00956_5_result,trial_of_nutrients_lagtime_c00956_5_result_1).
has_representation(trial_of_nutrients_lagtime_c00956_5_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00956_5_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00956_5_result_1,trial_of_nutrients_lagtime_c00956_5_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00956_5_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00956_5_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00956_5_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00956_5_result,trial_of_nutrients_lagtime_c00956_5_result_2).
has_representation(trial_of_nutrients_lagtime_c00956_5_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00956_5_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00956_5_result_2,trial_of_nutrients_lagtime_c00956_5_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00956_5_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00956_5_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00956_5_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00956_6,trial_of_nutrients_lagtime_c00956_6_design).
design(trial_of_nutrients_lagtime_c00956_6_design).
has_proposition(trial_of_nutrients_lagtime_c00956_6_design,trial_of_nutrients_lagtime_c00956_6_factor).
factor(trial_of_nutrients_lagtime_c00956_6_factor).
has_representation(trial_of_nutrients_lagtime_c00956_6_factor,'presence or absence of c00956').
has_input(trial_of_nutrients_lagtime_c00956_6,trial_of_nutrients_lagtime_c00956_6_data).
data(trial_of_nutrients_lagtime_c00956_6_data).
has_part(trial_of_nutrients_lagtime_c00956_6_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00956_6_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00956_6_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00956_6,'trial-130407_expt001-plate003').
plate('trial-130407_expt001-plate003').
has_proposition(trial_of_nutrients_lagtime_c00956_6,trial_of_nutrients_lagtime_c00956_6_result).
result(trial_of_nutrients_lagtime_c00956_6_result).
has_part(trial_of_nutrients_lagtime_c00956_6_result,trial_of_nutrients_lagtime_c00956_6_result_1).
has_representation(trial_of_nutrients_lagtime_c00956_6_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00956_6_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00956_6_result_1,trial_of_nutrients_lagtime_c00956_6_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00956_6_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00956_6_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00956_6_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00956_6_result,trial_of_nutrients_lagtime_c00956_6_result_2).
has_representation(trial_of_nutrients_lagtime_c00956_6_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00956_6_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00956_6_result_2,trial_of_nutrients_lagtime_c00956_6_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00956_6_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00956_6_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00956_6_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00956_7,trial_of_nutrients_lagtime_c00956_7_design).
design(trial_of_nutrients_lagtime_c00956_7_design).
has_proposition(trial_of_nutrients_lagtime_c00956_7_design,trial_of_nutrients_lagtime_c00956_7_factor).
factor(trial_of_nutrients_lagtime_c00956_7_factor).
has_representation(trial_of_nutrients_lagtime_c00956_7_factor,'presence or absence of c00956').
has_input(trial_of_nutrients_lagtime_c00956_7,trial_of_nutrients_lagtime_c00956_7_data).
data(trial_of_nutrients_lagtime_c00956_7_data).
has_part(trial_of_nutrients_lagtime_c00956_7_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00956_7_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00956_7_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00956_7,'trial-130407_expt001-plate006').
plate('trial-130407_expt001-plate006').
has_proposition(trial_of_nutrients_lagtime_c00956_7,trial_of_nutrients_lagtime_c00956_7_result).
result(trial_of_nutrients_lagtime_c00956_7_result).
has_part(trial_of_nutrients_lagtime_c00956_7_result,trial_of_nutrients_lagtime_c00956_7_result_1).
has_representation(trial_of_nutrients_lagtime_c00956_7_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00956_7_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00956_7_result_1,trial_of_nutrients_lagtime_c00956_7_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00956_7_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00956_7_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00956_7_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00956_7_result,trial_of_nutrients_lagtime_c00956_7_result_2).
has_representation(trial_of_nutrients_lagtime_c00956_7_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00956_7_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00956_7_result_2,trial_of_nutrients_lagtime_c00956_7_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00956_7_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00956_7_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00956_7_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00956,trial_of_nutrients_lagtime_c00956_results).
result(trial_of_nutrients_lagtime_c00956_results).
has_part(trial_of_nutrients_lagtime_c00956_results,trial_of_nutrients_lagtime_c00956_results_1).
has_representation(trial_of_nutrients_lagtime_c00956_results_1,'median of wildtype medians in minimal').
text_representation('median of wildtype medians in minimal').
has_proposition(trial_of_nutrients_lagtime_c00956_results_1,trial_of_nutrients_lagtime_c00956_results_1_proc).
procedure(trial_of_nutrients_lagtime_c00956_results_1_proc).
has_proposition(trial_of_nutrients_lagtime_c00956_results_1_proc,'procedures/remove_dupl_medians_nut.R').
link('procedures/remove_dupl_medians_nut.R').
has_part(trial_of_nutrients_lagtime_c00956_results,trial_of_nutrients_lagtime_c00956_results_2).
has_representation(trial_of_nutrients_lagtime_c00956_results_2,'median of wildtype medians in minimal with metabolite').
text_representation('median of wildtype medians in minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00956_results_2,trial_of_nutrients_lagtime_c00956_results_2_proc).
procedure(trial_of_nutrients_lagtime_c00956_results_2_proc).
has_proposition(trial_of_nutrients_lagtime_c00956_results_2_proc,'procedures/remove_dupl_medians_nut.R').
link('procedures/remove_dupl_medians_nut.R').
has_part(trial_of_nutrients_lagtime_c00956_results,trial_of_nutrients_lagtime_c00956_results_3).
has_representation(trial_of_nutrients_lagtime_c00956_results_3,'difference between trial_of_nutrients_lagtime_c00956_results_1 and trial_of_nutrients_lagtime_c00956_results_2').
text_representation('difference between trial_of_nutrients_lagtime_c00956_results_1 and trial_of_nutrients_lagtime_c00956_results_2').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_result).
result(study_on_rich_growthrate_result).
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_1).
has_representation(study_on_rich_growthrate_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_rich_growthrate_result_1,'results/wr_kr_growth_rate.csv').
link('results/wr_kr_growth_rate.csv').
has_proposition(study_on_rich_growthrate_result_1,study_on_rich_growthrate_result_1_proc).
procedure(study_on_rich_growthrate_result_1_proc).
has_proposition(study_on_rich_growthrate_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_2).
has_representation(study_on_rich_growthrate_result_2,'bar graph (histogram) plotting study_on_rich_growthrate_result_1').
text_representation('bar graph (histogram) plotting study_on_rich_growthrate_result_1').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate1.tiff').
link('results/kr_wr_growth_rate1.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate2.tiff').
link('results/kr_wr_growth_rate2.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/overlayed_growth_rate.tiff').
link('results/overlayed_growth_rate.tiff').
has_proposition(study_on_rich_growthrate_result_2,study_on_rich_growthrate_result_2_proc).
procedure(study_on_rich_growthrate_result_2_proc).
has_proposition(study_on_rich_growthrate_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_conclusion).
conclusion(study_on_rich_growthrate_conclusion).
has_representation(study_on_rich_growthrate_conclusion,'The knockouts have higher growth rate in rich than the wild type').
text_representation('The knockouts have higher growth rate in rich than the wild type').
has_proposition(study_on_rich_growthrate_conclusion,'obtain statistical mode of study_on_rich_growthrate_result_1').
procedure('obtain statistical mode of study_on_rich_growthrate_result_1').
text_representation('obtain statistical mode of study_on_rich_growthrate_result_1').
has_part(study_of_nutrients_lagtime,trial_of_nutrients_lagtime_c00350).
trial(trial_of_nutrients_lagtime_c00350).
has_agent(trial_of_nutrients_lagtime_c00350,c00350).
metabolite(c00350).
has_proposition(trial_of_nutrients_lagtime_c00350_1,trial_of_nutrients_lagtime_c00350_1_design).
design(trial_of_nutrients_lagtime_c00350_1_design).
has_proposition(trial_of_nutrients_lagtime_c00350_1_design,trial_of_nutrients_lagtime_c00350_1_factor).
factor(trial_of_nutrients_lagtime_c00350_1_factor).
has_representation(trial_of_nutrients_lagtime_c00350_1_factor,'presence or absence of c00350').
has_input(trial_of_nutrients_lagtime_c00350_1,trial_of_nutrients_lagtime_c00350_1_data).
data(trial_of_nutrients_lagtime_c00350_1_data).
has_part(trial_of_nutrients_lagtime_c00350_1_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00350_1_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00350_1_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00350_1,'mar07-trial7_expt001-plate008').
plate('mar07-trial7_expt001-plate008').
has_proposition(trial_of_nutrients_lagtime_c00350_1,trial_of_nutrients_lagtime_c00350_1_result).
result(trial_of_nutrients_lagtime_c00350_1_result).
has_part(trial_of_nutrients_lagtime_c00350_1_result,trial_of_nutrients_lagtime_c00350_1_result_1).
has_representation(trial_of_nutrients_lagtime_c00350_1_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00350_1_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00350_1_result_1,trial_of_nutrients_lagtime_c00350_1_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00350_1_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00350_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00350_1_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00350_1_result,trial_of_nutrients_lagtime_c00350_1_result_2).
has_representation(trial_of_nutrients_lagtime_c00350_1_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00350_1_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00350_1_result_2,trial_of_nutrients_lagtime_c00350_1_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00350_1_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00350_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00350_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00350,trial_of_nutrients_lagtime_c00350_results).
result(trial_of_nutrients_lagtime_c00350_results).
has_part(trial_of_nutrients_lagtime_c00350_results,trial_of_nutrients_lagtime_c00350_results_1).
has_representation(trial_of_nutrients_lagtime_c00350_results_1,'median of wildtype medians in minimal').
text_representation('median of wildtype medians in minimal').
has_proposition(trial_of_nutrients_lagtime_c00350_results_1,trial_of_nutrients_lagtime_c00350_results_1_proc).
procedure(trial_of_nutrients_lagtime_c00350_results_1_proc).
has_proposition(trial_of_nutrients_lagtime_c00350_results_1_proc,'procedures/remove_dupl_medians_nut.R').
link('procedures/remove_dupl_medians_nut.R').
has_part(trial_of_nutrients_lagtime_c00350_results,trial_of_nutrients_lagtime_c00350_results_2).
has_representation(trial_of_nutrients_lagtime_c00350_results_2,'median of wildtype medians in minimal with metabolite').
text_representation('median of wildtype medians in minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00350_results_2,trial_of_nutrients_lagtime_c00350_results_2_proc).
procedure(trial_of_nutrients_lagtime_c00350_results_2_proc).
has_proposition(trial_of_nutrients_lagtime_c00350_results_2_proc,'procedures/remove_dupl_medians_nut.R').
link('procedures/remove_dupl_medians_nut.R').
has_part(trial_of_nutrients_lagtime_c00350_results,trial_of_nutrients_lagtime_c00350_results_3).
has_representation(trial_of_nutrients_lagtime_c00350_results_3,'difference between trial_of_nutrients_lagtime_c00350_results_1 and trial_of_nutrients_lagtime_c00350_results_2').
text_representation('difference between trial_of_nutrients_lagtime_c00350_results_1 and trial_of_nutrients_lagtime_c00350_results_2').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_result).
result(study_on_rich_growthrate_result).
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_1).
has_representation(study_on_rich_growthrate_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_rich_growthrate_result_1,'results/wr_kr_growth_rate.csv').
link('results/wr_kr_growth_rate.csv').
has_proposition(study_on_rich_growthrate_result_1,study_on_rich_growthrate_result_1_proc).
procedure(study_on_rich_growthrate_result_1_proc).
has_proposition(study_on_rich_growthrate_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_2).
has_representation(study_on_rich_growthrate_result_2,'bar graph (histogram) plotting study_on_rich_growthrate_result_1').
text_representation('bar graph (histogram) plotting study_on_rich_growthrate_result_1').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate1.tiff').
link('results/kr_wr_growth_rate1.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate2.tiff').
link('results/kr_wr_growth_rate2.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/overlayed_growth_rate.tiff').
link('results/overlayed_growth_rate.tiff').
has_proposition(study_on_rich_growthrate_result_2,study_on_rich_growthrate_result_2_proc).
procedure(study_on_rich_growthrate_result_2_proc).
has_proposition(study_on_rich_growthrate_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_conclusion).
conclusion(study_on_rich_growthrate_conclusion).
has_representation(study_on_rich_growthrate_conclusion,'The knockouts have higher growth rate in rich than the wild type').
text_representation('The knockouts have higher growth rate in rich than the wild type').
has_proposition(study_on_rich_growthrate_conclusion,'obtain statistical mode of study_on_rich_growthrate_result_1').
procedure('obtain statistical mode of study_on_rich_growthrate_result_1').
text_representation('obtain statistical mode of study_on_rich_growthrate_result_1').
has_part(study_of_nutrients_lagtime,trial_of_nutrients_lagtime_c00665).
trial(trial_of_nutrients_lagtime_c00665).
has_agent(trial_of_nutrients_lagtime_c00665,c00665).
metabolite(c00665).
has_proposition(trial_of_nutrients_lagtime_c00665_1,trial_of_nutrients_lagtime_c00665_1_design).
design(trial_of_nutrients_lagtime_c00665_1_design).
has_proposition(trial_of_nutrients_lagtime_c00665_1_design,trial_of_nutrients_lagtime_c00665_1_factor).
factor(trial_of_nutrients_lagtime_c00665_1_factor).
has_representation(trial_of_nutrients_lagtime_c00665_1_factor,'presence or absence of c00665').
has_input(trial_of_nutrients_lagtime_c00665_1,trial_of_nutrients_lagtime_c00665_1_data).
data(trial_of_nutrients_lagtime_c00665_1_data).
has_part(trial_of_nutrients_lagtime_c00665_1_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00665_1_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00665_1_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00665_1,'mar07-trial2_expt001-plate002').
plate('mar07-trial2_expt001-plate002').
has_proposition(trial_of_nutrients_lagtime_c00665_1,trial_of_nutrients_lagtime_c00665_1_result).
result(trial_of_nutrients_lagtime_c00665_1_result).
has_part(trial_of_nutrients_lagtime_c00665_1_result,trial_of_nutrients_lagtime_c00665_1_result_1).
has_representation(trial_of_nutrients_lagtime_c00665_1_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00665_1_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00665_1_result_1,trial_of_nutrients_lagtime_c00665_1_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00665_1_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00665_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00665_1_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00665_1_result,trial_of_nutrients_lagtime_c00665_1_result_2).
has_representation(trial_of_nutrients_lagtime_c00665_1_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00665_1_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00665_1_result_2,trial_of_nutrients_lagtime_c00665_1_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00665_1_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00665_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00665_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00665,trial_of_nutrients_lagtime_c00665_results).
result(trial_of_nutrients_lagtime_c00665_results).
has_part(trial_of_nutrients_lagtime_c00665_results,trial_of_nutrients_lagtime_c00665_results_1).
has_representation(trial_of_nutrients_lagtime_c00665_results_1,'median of wildtype medians in minimal').
text_representation('median of wildtype medians in minimal').
has_proposition(trial_of_nutrients_lagtime_c00665_results_1,trial_of_nutrients_lagtime_c00665_results_1_proc).
procedure(trial_of_nutrients_lagtime_c00665_results_1_proc).
has_proposition(trial_of_nutrients_lagtime_c00665_results_1_proc,'procedures/remove_dupl_medians_nut.R').
link('procedures/remove_dupl_medians_nut.R').
has_part(trial_of_nutrients_lagtime_c00665_results,trial_of_nutrients_lagtime_c00665_results_2).
has_representation(trial_of_nutrients_lagtime_c00665_results_2,'median of wildtype medians in minimal with metabolite').
text_representation('median of wildtype medians in minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00665_results_2,trial_of_nutrients_lagtime_c00665_results_2_proc).
procedure(trial_of_nutrients_lagtime_c00665_results_2_proc).
has_proposition(trial_of_nutrients_lagtime_c00665_results_2_proc,'procedures/remove_dupl_medians_nut.R').
link('procedures/remove_dupl_medians_nut.R').
has_part(trial_of_nutrients_lagtime_c00665_results,trial_of_nutrients_lagtime_c00665_results_3).
has_representation(trial_of_nutrients_lagtime_c00665_results_3,'difference between trial_of_nutrients_lagtime_c00665_results_1 and trial_of_nutrients_lagtime_c00665_results_2').
text_representation('difference between trial_of_nutrients_lagtime_c00665_results_1 and trial_of_nutrients_lagtime_c00665_results_2').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_result).
result(study_on_rich_growthrate_result).
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_1).
has_representation(study_on_rich_growthrate_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_rich_growthrate_result_1,'results/wr_kr_growth_rate.csv').
link('results/wr_kr_growth_rate.csv').
has_proposition(study_on_rich_growthrate_result_1,study_on_rich_growthrate_result_1_proc).
procedure(study_on_rich_growthrate_result_1_proc).
has_proposition(study_on_rich_growthrate_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_2).
has_representation(study_on_rich_growthrate_result_2,'bar graph (histogram) plotting study_on_rich_growthrate_result_1').
text_representation('bar graph (histogram) plotting study_on_rich_growthrate_result_1').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate1.tiff').
link('results/kr_wr_growth_rate1.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate2.tiff').
link('results/kr_wr_growth_rate2.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/overlayed_growth_rate.tiff').
link('results/overlayed_growth_rate.tiff').
has_proposition(study_on_rich_growthrate_result_2,study_on_rich_growthrate_result_2_proc).
procedure(study_on_rich_growthrate_result_2_proc).
has_proposition(study_on_rich_growthrate_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_conclusion).
conclusion(study_on_rich_growthrate_conclusion).
has_representation(study_on_rich_growthrate_conclusion,'The knockouts have higher growth rate in rich than the wild type').
text_representation('The knockouts have higher growth rate in rich than the wild type').
has_proposition(study_on_rich_growthrate_conclusion,'obtain statistical mode of study_on_rich_growthrate_result_1').
procedure('obtain statistical mode of study_on_rich_growthrate_result_1').
text_representation('obtain statistical mode of study_on_rich_growthrate_result_1').
has_part(study_of_nutrients_lagtime,trial_of_nutrients_lagtime_c05345).
trial(trial_of_nutrients_lagtime_c05345).
has_agent(trial_of_nutrients_lagtime_c05345,c05345).
metabolite(c05345).
has_proposition(trial_of_nutrients_lagtime_c05345_1,trial_of_nutrients_lagtime_c05345_1_design).
design(trial_of_nutrients_lagtime_c05345_1_design).
has_proposition(trial_of_nutrients_lagtime_c05345_1_design,trial_of_nutrients_lagtime_c05345_1_factor).
factor(trial_of_nutrients_lagtime_c05345_1_factor).
has_representation(trial_of_nutrients_lagtime_c05345_1_factor,'presence or absence of c05345').
has_input(trial_of_nutrients_lagtime_c05345_1,trial_of_nutrients_lagtime_c05345_1_data).
data(trial_of_nutrients_lagtime_c05345_1_data).
has_part(trial_of_nutrients_lagtime_c05345_1_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c05345_1_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c05345_1_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c05345_1,'mar07-trial2_expt001-plate001').
plate('mar07-trial2_expt001-plate001').
has_proposition(trial_of_nutrients_lagtime_c05345_1,trial_of_nutrients_lagtime_c05345_1_result).
result(trial_of_nutrients_lagtime_c05345_1_result).
has_part(trial_of_nutrients_lagtime_c05345_1_result,trial_of_nutrients_lagtime_c05345_1_result_1).
has_representation(trial_of_nutrients_lagtime_c05345_1_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c05345_1_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c05345_1_result_1,trial_of_nutrients_lagtime_c05345_1_result_1_proc).
procedure(trial_of_nutrients_lagtime_c05345_1_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c05345_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c05345_1_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c05345_1_result,trial_of_nutrients_lagtime_c05345_1_result_2).
has_representation(trial_of_nutrients_lagtime_c05345_1_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c05345_1_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c05345_1_result_2,trial_of_nutrients_lagtime_c05345_1_result_2_proc).
procedure(trial_of_nutrients_lagtime_c05345_1_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c05345_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c05345_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c05345_2,trial_of_nutrients_lagtime_c05345_2_design).
design(trial_of_nutrients_lagtime_c05345_2_design).
has_proposition(trial_of_nutrients_lagtime_c05345_2_design,trial_of_nutrients_lagtime_c05345_2_factor).
factor(trial_of_nutrients_lagtime_c05345_2_factor).
has_representation(trial_of_nutrients_lagtime_c05345_2_factor,'presence or absence of c05345').
has_input(trial_of_nutrients_lagtime_c05345_2,trial_of_nutrients_lagtime_c05345_2_data).
data(trial_of_nutrients_lagtime_c05345_2_data).
has_part(trial_of_nutrients_lagtime_c05345_2_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c05345_2_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c05345_2_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c05345_2,'mar07-trial3_expt001-plate002').
plate('mar07-trial3_expt001-plate002').
has_proposition(trial_of_nutrients_lagtime_c05345_2,trial_of_nutrients_lagtime_c05345_2_result).
result(trial_of_nutrients_lagtime_c05345_2_result).
has_part(trial_of_nutrients_lagtime_c05345_2_result,trial_of_nutrients_lagtime_c05345_2_result_1).
has_representation(trial_of_nutrients_lagtime_c05345_2_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c05345_2_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c05345_2_result_1,trial_of_nutrients_lagtime_c05345_2_result_1_proc).
procedure(trial_of_nutrients_lagtime_c05345_2_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c05345_2_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c05345_2_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c05345_2_result,trial_of_nutrients_lagtime_c05345_2_result_2).
has_representation(trial_of_nutrients_lagtime_c05345_2_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c05345_2_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c05345_2_result_2,trial_of_nutrients_lagtime_c05345_2_result_2_proc).
procedure(trial_of_nutrients_lagtime_c05345_2_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c05345_2_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c05345_2_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c05345,trial_of_nutrients_lagtime_c05345_results).
result(trial_of_nutrients_lagtime_c05345_results).
has_part(trial_of_nutrients_lagtime_c05345_results,trial_of_nutrients_lagtime_c05345_results_1).
has_representation(trial_of_nutrients_lagtime_c05345_results_1,'median of wildtype medians in minimal').
text_representation('median of wildtype medians in minimal').
has_proposition(trial_of_nutrients_lagtime_c05345_results_1,trial_of_nutrients_lagtime_c05345_results_1_proc).
procedure(trial_of_nutrients_lagtime_c05345_results_1_proc).
has_proposition(trial_of_nutrients_lagtime_c05345_results_1_proc,'procedures/remove_dupl_medians_nut.R').
link('procedures/remove_dupl_medians_nut.R').
has_part(trial_of_nutrients_lagtime_c05345_results,trial_of_nutrients_lagtime_c05345_results_2).
has_representation(trial_of_nutrients_lagtime_c05345_results_2,'median of wildtype medians in minimal with metabolite').
text_representation('median of wildtype medians in minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c05345_results_2,trial_of_nutrients_lagtime_c05345_results_2_proc).
procedure(trial_of_nutrients_lagtime_c05345_results_2_proc).
has_proposition(trial_of_nutrients_lagtime_c05345_results_2_proc,'procedures/remove_dupl_medians_nut.R').
link('procedures/remove_dupl_medians_nut.R').
has_part(trial_of_nutrients_lagtime_c05345_results,trial_of_nutrients_lagtime_c05345_results_3).
has_representation(trial_of_nutrients_lagtime_c05345_results_3,'difference between trial_of_nutrients_lagtime_c05345_results_1 and trial_of_nutrients_lagtime_c05345_results_2').
text_representation('difference between trial_of_nutrients_lagtime_c05345_results_1 and trial_of_nutrients_lagtime_c05345_results_2').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_result).
result(study_on_rich_growthrate_result).
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_1).
has_representation(study_on_rich_growthrate_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_rich_growthrate_result_1,'results/wr_kr_growth_rate.csv').
link('results/wr_kr_growth_rate.csv').
has_proposition(study_on_rich_growthrate_result_1,study_on_rich_growthrate_result_1_proc).
procedure(study_on_rich_growthrate_result_1_proc).
has_proposition(study_on_rich_growthrate_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_2).
has_representation(study_on_rich_growthrate_result_2,'bar graph (histogram) plotting study_on_rich_growthrate_result_1').
text_representation('bar graph (histogram) plotting study_on_rich_growthrate_result_1').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate1.tiff').
link('results/kr_wr_growth_rate1.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate2.tiff').
link('results/kr_wr_growth_rate2.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/overlayed_growth_rate.tiff').
link('results/overlayed_growth_rate.tiff').
has_proposition(study_on_rich_growthrate_result_2,study_on_rich_growthrate_result_2_proc).
procedure(study_on_rich_growthrate_result_2_proc).
has_proposition(study_on_rich_growthrate_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_conclusion).
conclusion(study_on_rich_growthrate_conclusion).
has_representation(study_on_rich_growthrate_conclusion,'The knockouts have higher growth rate in rich than the wild type').
text_representation('The knockouts have higher growth rate in rich than the wild type').
has_proposition(study_on_rich_growthrate_conclusion,'obtain statistical mode of study_on_rich_growthrate_result_1').
procedure('obtain statistical mode of study_on_rich_growthrate_result_1').
text_representation('obtain statistical mode of study_on_rich_growthrate_result_1').
has_part(study_of_nutrients_lagtime,trial_of_nutrients_lagtime_c00668).
trial(trial_of_nutrients_lagtime_c00668).
has_agent(trial_of_nutrients_lagtime_c00668,c00668).
metabolite(c00668).
has_proposition(trial_of_nutrients_lagtime_c00668_1,trial_of_nutrients_lagtime_c00668_1_design).
design(trial_of_nutrients_lagtime_c00668_1_design).
has_proposition(trial_of_nutrients_lagtime_c00668_1_design,trial_of_nutrients_lagtime_c00668_1_factor).
factor(trial_of_nutrients_lagtime_c00668_1_factor).
has_representation(trial_of_nutrients_lagtime_c00668_1_factor,'presence or absence of c00668').
has_input(trial_of_nutrients_lagtime_c00668_1,trial_of_nutrients_lagtime_c00668_1_data).
data(trial_of_nutrients_lagtime_c00668_1_data).
has_part(trial_of_nutrients_lagtime_c00668_1_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00668_1_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00668_1_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00668_1,'mar07-trial3_expt001-plate005').
plate('mar07-trial3_expt001-plate005').
has_proposition(trial_of_nutrients_lagtime_c00668_1,trial_of_nutrients_lagtime_c00668_1_result).
result(trial_of_nutrients_lagtime_c00668_1_result).
has_part(trial_of_nutrients_lagtime_c00668_1_result,trial_of_nutrients_lagtime_c00668_1_result_1).
has_representation(trial_of_nutrients_lagtime_c00668_1_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00668_1_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00668_1_result_1,trial_of_nutrients_lagtime_c00668_1_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00668_1_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00668_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00668_1_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00668_1_result,trial_of_nutrients_lagtime_c00668_1_result_2).
has_representation(trial_of_nutrients_lagtime_c00668_1_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00668_1_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00668_1_result_2,trial_of_nutrients_lagtime_c00668_1_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00668_1_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00668_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00668_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00668,trial_of_nutrients_lagtime_c00668_results).
result(trial_of_nutrients_lagtime_c00668_results).
has_part(trial_of_nutrients_lagtime_c00668_results,trial_of_nutrients_lagtime_c00668_results_1).
has_representation(trial_of_nutrients_lagtime_c00668_results_1,'median of wildtype medians in minimal').
text_representation('median of wildtype medians in minimal').
has_proposition(trial_of_nutrients_lagtime_c00668_results_1,trial_of_nutrients_lagtime_c00668_results_1_proc).
procedure(trial_of_nutrients_lagtime_c00668_results_1_proc).
has_proposition(trial_of_nutrients_lagtime_c00668_results_1_proc,'procedures/remove_dupl_medians_nut.R').
link('procedures/remove_dupl_medians_nut.R').
has_part(trial_of_nutrients_lagtime_c00668_results,trial_of_nutrients_lagtime_c00668_results_2).
has_representation(trial_of_nutrients_lagtime_c00668_results_2,'median of wildtype medians in minimal with metabolite').
text_representation('median of wildtype medians in minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00668_results_2,trial_of_nutrients_lagtime_c00668_results_2_proc).
procedure(trial_of_nutrients_lagtime_c00668_results_2_proc).
has_proposition(trial_of_nutrients_lagtime_c00668_results_2_proc,'procedures/remove_dupl_medians_nut.R').
link('procedures/remove_dupl_medians_nut.R').
has_part(trial_of_nutrients_lagtime_c00668_results,trial_of_nutrients_lagtime_c00668_results_3).
has_representation(trial_of_nutrients_lagtime_c00668_results_3,'difference between trial_of_nutrients_lagtime_c00668_results_1 and trial_of_nutrients_lagtime_c00668_results_2').
text_representation('difference between trial_of_nutrients_lagtime_c00668_results_1 and trial_of_nutrients_lagtime_c00668_results_2').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_result).
result(study_on_rich_growthrate_result).
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_1).
has_representation(study_on_rich_growthrate_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_rich_growthrate_result_1,'results/wr_kr_growth_rate.csv').
link('results/wr_kr_growth_rate.csv').
has_proposition(study_on_rich_growthrate_result_1,study_on_rich_growthrate_result_1_proc).
procedure(study_on_rich_growthrate_result_1_proc).
has_proposition(study_on_rich_growthrate_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_2).
has_representation(study_on_rich_growthrate_result_2,'bar graph (histogram) plotting study_on_rich_growthrate_result_1').
text_representation('bar graph (histogram) plotting study_on_rich_growthrate_result_1').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate1.tiff').
link('results/kr_wr_growth_rate1.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate2.tiff').
link('results/kr_wr_growth_rate2.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/overlayed_growth_rate.tiff').
link('results/overlayed_growth_rate.tiff').
has_proposition(study_on_rich_growthrate_result_2,study_on_rich_growthrate_result_2_proc).
procedure(study_on_rich_growthrate_result_2_proc).
has_proposition(study_on_rich_growthrate_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_conclusion).
conclusion(study_on_rich_growthrate_conclusion).
has_representation(study_on_rich_growthrate_conclusion,'The knockouts have higher growth rate in rich than the wild type').
text_representation('The knockouts have higher growth rate in rich than the wild type').
has_proposition(study_on_rich_growthrate_conclusion,'obtain statistical mode of study_on_rich_growthrate_result_1').
procedure('obtain statistical mode of study_on_rich_growthrate_result_1').
text_representation('obtain statistical mode of study_on_rich_growthrate_result_1').
has_part(study_of_nutrients_lagtime,trial_of_nutrients_lagtime_c00242).
trial(trial_of_nutrients_lagtime_c00242).
has_agent(trial_of_nutrients_lagtime_c00242,c00242).
metabolite(c00242).
has_proposition(trial_of_nutrients_lagtime_c00242_1,trial_of_nutrients_lagtime_c00242_1_design).
design(trial_of_nutrients_lagtime_c00242_1_design).
has_proposition(trial_of_nutrients_lagtime_c00242_1_design,trial_of_nutrients_lagtime_c00242_1_factor).
factor(trial_of_nutrients_lagtime_c00242_1_factor).
has_representation(trial_of_nutrients_lagtime_c00242_1_factor,'presence or absence of c00242').
has_input(trial_of_nutrients_lagtime_c00242_1,trial_of_nutrients_lagtime_c00242_1_data).
data(trial_of_nutrients_lagtime_c00242_1_data).
has_part(trial_of_nutrients_lagtime_c00242_1_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00242_1_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00242_1_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00242_1,'mar07-trial1_expt001-plate004').
plate('mar07-trial1_expt001-plate004').
has_proposition(trial_of_nutrients_lagtime_c00242_1,trial_of_nutrients_lagtime_c00242_1_result).
result(trial_of_nutrients_lagtime_c00242_1_result).
has_part(trial_of_nutrients_lagtime_c00242_1_result,trial_of_nutrients_lagtime_c00242_1_result_1).
has_representation(trial_of_nutrients_lagtime_c00242_1_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00242_1_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00242_1_result_1,trial_of_nutrients_lagtime_c00242_1_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00242_1_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00242_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00242_1_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00242_1_result,trial_of_nutrients_lagtime_c00242_1_result_2).
has_representation(trial_of_nutrients_lagtime_c00242_1_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00242_1_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00242_1_result_2,trial_of_nutrients_lagtime_c00242_1_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00242_1_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00242_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00242_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00242_2,trial_of_nutrients_lagtime_c00242_2_design).
design(trial_of_nutrients_lagtime_c00242_2_design).
has_proposition(trial_of_nutrients_lagtime_c00242_2_design,trial_of_nutrients_lagtime_c00242_2_factor).
factor(trial_of_nutrients_lagtime_c00242_2_factor).
has_representation(trial_of_nutrients_lagtime_c00242_2_factor,'presence or absence of c00242').
has_input(trial_of_nutrients_lagtime_c00242_2,trial_of_nutrients_lagtime_c00242_2_data).
data(trial_of_nutrients_lagtime_c00242_2_data).
has_part(trial_of_nutrients_lagtime_c00242_2_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00242_2_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00242_2_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00242_2,'mar07-trial3_expt001-plate004').
plate('mar07-trial3_expt001-plate004').
has_proposition(trial_of_nutrients_lagtime_c00242_2,trial_of_nutrients_lagtime_c00242_2_result).
result(trial_of_nutrients_lagtime_c00242_2_result).
has_part(trial_of_nutrients_lagtime_c00242_2_result,trial_of_nutrients_lagtime_c00242_2_result_1).
has_representation(trial_of_nutrients_lagtime_c00242_2_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00242_2_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00242_2_result_1,trial_of_nutrients_lagtime_c00242_2_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00242_2_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00242_2_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00242_2_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00242_2_result,trial_of_nutrients_lagtime_c00242_2_result_2).
has_representation(trial_of_nutrients_lagtime_c00242_2_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00242_2_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00242_2_result_2,trial_of_nutrients_lagtime_c00242_2_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00242_2_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00242_2_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00242_2_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00242,trial_of_nutrients_lagtime_c00242_results).
result(trial_of_nutrients_lagtime_c00242_results).
has_part(trial_of_nutrients_lagtime_c00242_results,trial_of_nutrients_lagtime_c00242_results_1).
has_representation(trial_of_nutrients_lagtime_c00242_results_1,'median of wildtype medians in minimal').
text_representation('median of wildtype medians in minimal').
has_proposition(trial_of_nutrients_lagtime_c00242_results_1,trial_of_nutrients_lagtime_c00242_results_1_proc).
procedure(trial_of_nutrients_lagtime_c00242_results_1_proc).
has_proposition(trial_of_nutrients_lagtime_c00242_results_1_proc,'procedures/remove_dupl_medians_nut.R').
link('procedures/remove_dupl_medians_nut.R').
has_part(trial_of_nutrients_lagtime_c00242_results,trial_of_nutrients_lagtime_c00242_results_2).
has_representation(trial_of_nutrients_lagtime_c00242_results_2,'median of wildtype medians in minimal with metabolite').
text_representation('median of wildtype medians in minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00242_results_2,trial_of_nutrients_lagtime_c00242_results_2_proc).
procedure(trial_of_nutrients_lagtime_c00242_results_2_proc).
has_proposition(trial_of_nutrients_lagtime_c00242_results_2_proc,'procedures/remove_dupl_medians_nut.R').
link('procedures/remove_dupl_medians_nut.R').
has_part(trial_of_nutrients_lagtime_c00242_results,trial_of_nutrients_lagtime_c00242_results_3).
has_representation(trial_of_nutrients_lagtime_c00242_results_3,'difference between trial_of_nutrients_lagtime_c00242_results_1 and trial_of_nutrients_lagtime_c00242_results_2').
text_representation('difference between trial_of_nutrients_lagtime_c00242_results_1 and trial_of_nutrients_lagtime_c00242_results_2').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_result).
result(study_on_rich_growthrate_result).
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_1).
has_representation(study_on_rich_growthrate_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_rich_growthrate_result_1,'results/wr_kr_growth_rate.csv').
link('results/wr_kr_growth_rate.csv').
has_proposition(study_on_rich_growthrate_result_1,study_on_rich_growthrate_result_1_proc).
procedure(study_on_rich_growthrate_result_1_proc).
has_proposition(study_on_rich_growthrate_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_2).
has_representation(study_on_rich_growthrate_result_2,'bar graph (histogram) plotting study_on_rich_growthrate_result_1').
text_representation('bar graph (histogram) plotting study_on_rich_growthrate_result_1').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate1.tiff').
link('results/kr_wr_growth_rate1.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate2.tiff').
link('results/kr_wr_growth_rate2.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/overlayed_growth_rate.tiff').
link('results/overlayed_growth_rate.tiff').
has_proposition(study_on_rich_growthrate_result_2,study_on_rich_growthrate_result_2_proc).
procedure(study_on_rich_growthrate_result_2_proc).
has_proposition(study_on_rich_growthrate_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_conclusion).
conclusion(study_on_rich_growthrate_conclusion).
has_representation(study_on_rich_growthrate_conclusion,'The knockouts have higher growth rate in rich than the wild type').
text_representation('The knockouts have higher growth rate in rich than the wild type').
has_proposition(study_on_rich_growthrate_conclusion,'obtain statistical mode of study_on_rich_growthrate_result_1').
procedure('obtain statistical mode of study_on_rich_growthrate_result_1').
text_representation('obtain statistical mode of study_on_rich_growthrate_result_1').
has_part(study_of_nutrients_lagtime,trial_of_nutrients_lagtime_c00082).
trial(trial_of_nutrients_lagtime_c00082).
has_agent(trial_of_nutrients_lagtime_c00082,c00082).
metabolite(c00082).
has_proposition(trial_of_nutrients_lagtime_c00082_1,trial_of_nutrients_lagtime_c00082_1_design).
design(trial_of_nutrients_lagtime_c00082_1_design).
has_proposition(trial_of_nutrients_lagtime_c00082_1_design,trial_of_nutrients_lagtime_c00082_1_factor).
factor(trial_of_nutrients_lagtime_c00082_1_factor).
has_representation(trial_of_nutrients_lagtime_c00082_1_factor,'presence or absence of c00082').
has_input(trial_of_nutrients_lagtime_c00082_1,trial_of_nutrients_lagtime_c00082_1_data).
data(trial_of_nutrients_lagtime_c00082_1_data).
has_part(trial_of_nutrients_lagtime_c00082_1_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00082_1_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00082_1_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00082_1,'nature-loop3_expt004-plate001').
plate('nature-loop3_expt004-plate001').
has_proposition(trial_of_nutrients_lagtime_c00082_1,trial_of_nutrients_lagtime_c00082_1_result).
result(trial_of_nutrients_lagtime_c00082_1_result).
has_part(trial_of_nutrients_lagtime_c00082_1_result,trial_of_nutrients_lagtime_c00082_1_result_1).
has_representation(trial_of_nutrients_lagtime_c00082_1_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00082_1_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00082_1_result_1,trial_of_nutrients_lagtime_c00082_1_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00082_1_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00082_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00082_1_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00082_1_result,trial_of_nutrients_lagtime_c00082_1_result_2).
has_representation(trial_of_nutrients_lagtime_c00082_1_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00082_1_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00082_1_result_2,trial_of_nutrients_lagtime_c00082_1_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00082_1_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00082_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00082_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00082_2,trial_of_nutrients_lagtime_c00082_2_design).
design(trial_of_nutrients_lagtime_c00082_2_design).
has_proposition(trial_of_nutrients_lagtime_c00082_2_design,trial_of_nutrients_lagtime_c00082_2_factor).
factor(trial_of_nutrients_lagtime_c00082_2_factor).
has_representation(trial_of_nutrients_lagtime_c00082_2_factor,'presence or absence of c00082').
has_input(trial_of_nutrients_lagtime_c00082_2,trial_of_nutrients_lagtime_c00082_2_data).
data(trial_of_nutrients_lagtime_c00082_2_data).
has_part(trial_of_nutrients_lagtime_c00082_2_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00082_2_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00082_2_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00082_2,'nature-loop3_expt004-plate008').
plate('nature-loop3_expt004-plate008').
has_proposition(trial_of_nutrients_lagtime_c00082_2,trial_of_nutrients_lagtime_c00082_2_result).
result(trial_of_nutrients_lagtime_c00082_2_result).
has_part(trial_of_nutrients_lagtime_c00082_2_result,trial_of_nutrients_lagtime_c00082_2_result_1).
has_representation(trial_of_nutrients_lagtime_c00082_2_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00082_2_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00082_2_result_1,trial_of_nutrients_lagtime_c00082_2_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00082_2_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00082_2_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00082_2_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00082_2_result,trial_of_nutrients_lagtime_c00082_2_result_2).
has_representation(trial_of_nutrients_lagtime_c00082_2_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00082_2_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00082_2_result_2,trial_of_nutrients_lagtime_c00082_2_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00082_2_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00082_2_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00082_2_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00082_3,trial_of_nutrients_lagtime_c00082_3_design).
design(trial_of_nutrients_lagtime_c00082_3_design).
has_proposition(trial_of_nutrients_lagtime_c00082_3_design,trial_of_nutrients_lagtime_c00082_3_factor).
factor(trial_of_nutrients_lagtime_c00082_3_factor).
has_representation(trial_of_nutrients_lagtime_c00082_3_factor,'presence or absence of c00082').
has_input(trial_of_nutrients_lagtime_c00082_3,trial_of_nutrients_lagtime_c00082_3_data).
data(trial_of_nutrients_lagtime_c00082_3_data).
has_part(trial_of_nutrients_lagtime_c00082_3_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00082_3_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00082_3_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00082_3,'nature-loop2_expt001-plate009').
plate('nature-loop2_expt001-plate009').
has_proposition(trial_of_nutrients_lagtime_c00082_3,trial_of_nutrients_lagtime_c00082_3_result).
result(trial_of_nutrients_lagtime_c00082_3_result).
has_part(trial_of_nutrients_lagtime_c00082_3_result,trial_of_nutrients_lagtime_c00082_3_result_1).
has_representation(trial_of_nutrients_lagtime_c00082_3_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00082_3_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00082_3_result_1,trial_of_nutrients_lagtime_c00082_3_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00082_3_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00082_3_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00082_3_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00082_3_result,trial_of_nutrients_lagtime_c00082_3_result_2).
has_representation(trial_of_nutrients_lagtime_c00082_3_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00082_3_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00082_3_result_2,trial_of_nutrients_lagtime_c00082_3_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00082_3_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00082_3_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00082_3_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00082_4,trial_of_nutrients_lagtime_c00082_4_design).
design(trial_of_nutrients_lagtime_c00082_4_design).
has_proposition(trial_of_nutrients_lagtime_c00082_4_design,trial_of_nutrients_lagtime_c00082_4_factor).
factor(trial_of_nutrients_lagtime_c00082_4_factor).
has_representation(trial_of_nutrients_lagtime_c00082_4_factor,'presence or absence of c00082').
has_input(trial_of_nutrients_lagtime_c00082_4,trial_of_nutrients_lagtime_c00082_4_data).
data(trial_of_nutrients_lagtime_c00082_4_data).
has_part(trial_of_nutrients_lagtime_c00082_4_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00082_4_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00082_4_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00082_4,'nature-loop3_expt006-plate001').
plate('nature-loop3_expt006-plate001').
has_proposition(trial_of_nutrients_lagtime_c00082_4,trial_of_nutrients_lagtime_c00082_4_result).
result(trial_of_nutrients_lagtime_c00082_4_result).
has_part(trial_of_nutrients_lagtime_c00082_4_result,trial_of_nutrients_lagtime_c00082_4_result_1).
has_representation(trial_of_nutrients_lagtime_c00082_4_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00082_4_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00082_4_result_1,trial_of_nutrients_lagtime_c00082_4_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00082_4_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00082_4_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00082_4_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00082_4_result,trial_of_nutrients_lagtime_c00082_4_result_2).
has_representation(trial_of_nutrients_lagtime_c00082_4_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00082_4_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00082_4_result_2,trial_of_nutrients_lagtime_c00082_4_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00082_4_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00082_4_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00082_4_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00082_5,trial_of_nutrients_lagtime_c00082_5_design).
design(trial_of_nutrients_lagtime_c00082_5_design).
has_proposition(trial_of_nutrients_lagtime_c00082_5_design,trial_of_nutrients_lagtime_c00082_5_factor).
factor(trial_of_nutrients_lagtime_c00082_5_factor).
has_representation(trial_of_nutrients_lagtime_c00082_5_factor,'presence or absence of c00082').
has_input(trial_of_nutrients_lagtime_c00082_5,trial_of_nutrients_lagtime_c00082_5_data).
data(trial_of_nutrients_lagtime_c00082_5_data).
has_part(trial_of_nutrients_lagtime_c00082_5_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00082_5_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00082_5_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00082_5,'nature-loop3_expt006-plate002').
plate('nature-loop3_expt006-plate002').
has_proposition(trial_of_nutrients_lagtime_c00082_5,trial_of_nutrients_lagtime_c00082_5_result).
result(trial_of_nutrients_lagtime_c00082_5_result).
has_part(trial_of_nutrients_lagtime_c00082_5_result,trial_of_nutrients_lagtime_c00082_5_result_1).
has_representation(trial_of_nutrients_lagtime_c00082_5_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00082_5_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00082_5_result_1,trial_of_nutrients_lagtime_c00082_5_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00082_5_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00082_5_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00082_5_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00082_5_result,trial_of_nutrients_lagtime_c00082_5_result_2).
has_representation(trial_of_nutrients_lagtime_c00082_5_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00082_5_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00082_5_result_2,trial_of_nutrients_lagtime_c00082_5_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00082_5_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00082_5_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00082_5_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00082_6,trial_of_nutrients_lagtime_c00082_6_design).
design(trial_of_nutrients_lagtime_c00082_6_design).
has_proposition(trial_of_nutrients_lagtime_c00082_6_design,trial_of_nutrients_lagtime_c00082_6_factor).
factor(trial_of_nutrients_lagtime_c00082_6_factor).
has_representation(trial_of_nutrients_lagtime_c00082_6_factor,'presence or absence of c00082').
has_input(trial_of_nutrients_lagtime_c00082_6,trial_of_nutrients_lagtime_c00082_6_data).
data(trial_of_nutrients_lagtime_c00082_6_data).
has_part(trial_of_nutrients_lagtime_c00082_6_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00082_6_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00082_6_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00082_6,'nature-loop3_expt006-plate003').
plate('nature-loop3_expt006-plate003').
has_proposition(trial_of_nutrients_lagtime_c00082_6,trial_of_nutrients_lagtime_c00082_6_result).
result(trial_of_nutrients_lagtime_c00082_6_result).
has_part(trial_of_nutrients_lagtime_c00082_6_result,trial_of_nutrients_lagtime_c00082_6_result_1).
has_representation(trial_of_nutrients_lagtime_c00082_6_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00082_6_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00082_6_result_1,trial_of_nutrients_lagtime_c00082_6_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00082_6_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00082_6_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00082_6_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00082_6_result,trial_of_nutrients_lagtime_c00082_6_result_2).
has_representation(trial_of_nutrients_lagtime_c00082_6_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00082_6_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00082_6_result_2,trial_of_nutrients_lagtime_c00082_6_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00082_6_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00082_6_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00082_6_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00082_7,trial_of_nutrients_lagtime_c00082_7_design).
design(trial_of_nutrients_lagtime_c00082_7_design).
has_proposition(trial_of_nutrients_lagtime_c00082_7_design,trial_of_nutrients_lagtime_c00082_7_factor).
factor(trial_of_nutrients_lagtime_c00082_7_factor).
has_representation(trial_of_nutrients_lagtime_c00082_7_factor,'presence or absence of c00082').
has_input(trial_of_nutrients_lagtime_c00082_7,trial_of_nutrients_lagtime_c00082_7_data).
data(trial_of_nutrients_lagtime_c00082_7_data).
has_part(trial_of_nutrients_lagtime_c00082_7_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00082_7_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00082_7_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00082_7,'nature-loop3_expt006-plate004').
plate('nature-loop3_expt006-plate004').
has_proposition(trial_of_nutrients_lagtime_c00082_7,trial_of_nutrients_lagtime_c00082_7_result).
result(trial_of_nutrients_lagtime_c00082_7_result).
has_part(trial_of_nutrients_lagtime_c00082_7_result,trial_of_nutrients_lagtime_c00082_7_result_1).
has_representation(trial_of_nutrients_lagtime_c00082_7_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00082_7_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00082_7_result_1,trial_of_nutrients_lagtime_c00082_7_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00082_7_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00082_7_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00082_7_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00082_7_result,trial_of_nutrients_lagtime_c00082_7_result_2).
has_representation(trial_of_nutrients_lagtime_c00082_7_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00082_7_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00082_7_result_2,trial_of_nutrients_lagtime_c00082_7_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00082_7_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00082_7_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00082_7_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00082_8,trial_of_nutrients_lagtime_c00082_8_design).
design(trial_of_nutrients_lagtime_c00082_8_design).
has_proposition(trial_of_nutrients_lagtime_c00082_8_design,trial_of_nutrients_lagtime_c00082_8_factor).
factor(trial_of_nutrients_lagtime_c00082_8_factor).
has_representation(trial_of_nutrients_lagtime_c00082_8_factor,'presence or absence of c00082').
has_input(trial_of_nutrients_lagtime_c00082_8,trial_of_nutrients_lagtime_c00082_8_data).
data(trial_of_nutrients_lagtime_c00082_8_data).
has_part(trial_of_nutrients_lagtime_c00082_8_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00082_8_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00082_8_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00082_8,'nature-loop3_expt006-plate005').
plate('nature-loop3_expt006-plate005').
has_proposition(trial_of_nutrients_lagtime_c00082_8,trial_of_nutrients_lagtime_c00082_8_result).
result(trial_of_nutrients_lagtime_c00082_8_result).
has_part(trial_of_nutrients_lagtime_c00082_8_result,trial_of_nutrients_lagtime_c00082_8_result_1).
has_representation(trial_of_nutrients_lagtime_c00082_8_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00082_8_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00082_8_result_1,trial_of_nutrients_lagtime_c00082_8_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00082_8_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00082_8_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00082_8_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00082_8_result,trial_of_nutrients_lagtime_c00082_8_result_2).
has_representation(trial_of_nutrients_lagtime_c00082_8_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00082_8_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00082_8_result_2,trial_of_nutrients_lagtime_c00082_8_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00082_8_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00082_8_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00082_8_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00082_9,trial_of_nutrients_lagtime_c00082_9_design).
design(trial_of_nutrients_lagtime_c00082_9_design).
has_proposition(trial_of_nutrients_lagtime_c00082_9_design,trial_of_nutrients_lagtime_c00082_9_factor).
factor(trial_of_nutrients_lagtime_c00082_9_factor).
has_representation(trial_of_nutrients_lagtime_c00082_9_factor,'presence or absence of c00082').
has_input(trial_of_nutrients_lagtime_c00082_9,trial_of_nutrients_lagtime_c00082_9_data).
data(trial_of_nutrients_lagtime_c00082_9_data).
has_part(trial_of_nutrients_lagtime_c00082_9_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00082_9_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00082_9_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00082_9,'nature-loop3_expt006-plate006').
plate('nature-loop3_expt006-plate006').
has_proposition(trial_of_nutrients_lagtime_c00082_9,trial_of_nutrients_lagtime_c00082_9_result).
result(trial_of_nutrients_lagtime_c00082_9_result).
has_part(trial_of_nutrients_lagtime_c00082_9_result,trial_of_nutrients_lagtime_c00082_9_result_1).
has_representation(trial_of_nutrients_lagtime_c00082_9_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00082_9_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00082_9_result_1,trial_of_nutrients_lagtime_c00082_9_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00082_9_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00082_9_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00082_9_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00082_9_result,trial_of_nutrients_lagtime_c00082_9_result_2).
has_representation(trial_of_nutrients_lagtime_c00082_9_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00082_9_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00082_9_result_2,trial_of_nutrients_lagtime_c00082_9_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00082_9_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00082_9_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00082_9_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00082,trial_of_nutrients_lagtime_c00082_results).
result(trial_of_nutrients_lagtime_c00082_results).
has_part(trial_of_nutrients_lagtime_c00082_results,trial_of_nutrients_lagtime_c00082_results_1).
has_representation(trial_of_nutrients_lagtime_c00082_results_1,'median of wildtype medians in minimal').
text_representation('median of wildtype medians in minimal').
has_proposition(trial_of_nutrients_lagtime_c00082_results_1,trial_of_nutrients_lagtime_c00082_results_1_proc).
procedure(trial_of_nutrients_lagtime_c00082_results_1_proc).
has_proposition(trial_of_nutrients_lagtime_c00082_results_1_proc,'procedures/remove_dupl_medians_nut.R').
link('procedures/remove_dupl_medians_nut.R').
has_part(trial_of_nutrients_lagtime_c00082_results,trial_of_nutrients_lagtime_c00082_results_2).
has_representation(trial_of_nutrients_lagtime_c00082_results_2,'median of wildtype medians in minimal with metabolite').
text_representation('median of wildtype medians in minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00082_results_2,trial_of_nutrients_lagtime_c00082_results_2_proc).
procedure(trial_of_nutrients_lagtime_c00082_results_2_proc).
has_proposition(trial_of_nutrients_lagtime_c00082_results_2_proc,'procedures/remove_dupl_medians_nut.R').
link('procedures/remove_dupl_medians_nut.R').
has_part(trial_of_nutrients_lagtime_c00082_results,trial_of_nutrients_lagtime_c00082_results_3).
has_representation(trial_of_nutrients_lagtime_c00082_results_3,'difference between trial_of_nutrients_lagtime_c00082_results_1 and trial_of_nutrients_lagtime_c00082_results_2').
text_representation('difference between trial_of_nutrients_lagtime_c00082_results_1 and trial_of_nutrients_lagtime_c00082_results_2').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_result).
result(study_on_rich_growthrate_result).
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_1).
has_representation(study_on_rich_growthrate_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_rich_growthrate_result_1,'results/wr_kr_growth_rate.csv').
link('results/wr_kr_growth_rate.csv').
has_proposition(study_on_rich_growthrate_result_1,study_on_rich_growthrate_result_1_proc).
procedure(study_on_rich_growthrate_result_1_proc).
has_proposition(study_on_rich_growthrate_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_2).
has_representation(study_on_rich_growthrate_result_2,'bar graph (histogram) plotting study_on_rich_growthrate_result_1').
text_representation('bar graph (histogram) plotting study_on_rich_growthrate_result_1').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate1.tiff').
link('results/kr_wr_growth_rate1.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate2.tiff').
link('results/kr_wr_growth_rate2.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/overlayed_growth_rate.tiff').
link('results/overlayed_growth_rate.tiff').
has_proposition(study_on_rich_growthrate_result_2,study_on_rich_growthrate_result_2_proc).
procedure(study_on_rich_growthrate_result_2_proc).
has_proposition(study_on_rich_growthrate_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_conclusion).
conclusion(study_on_rich_growthrate_conclusion).
has_representation(study_on_rich_growthrate_conclusion,'The knockouts have higher growth rate in rich than the wild type').
text_representation('The knockouts have higher growth rate in rich than the wild type').
has_proposition(study_on_rich_growthrate_conclusion,'obtain statistical mode of study_on_rich_growthrate_result_1').
procedure('obtain statistical mode of study_on_rich_growthrate_result_1').
text_representation('obtain statistical mode of study_on_rich_growthrate_result_1').
has_part(study_of_nutrients_lagtime,trial_of_nutrients_lagtime_c00262).
trial(trial_of_nutrients_lagtime_c00262).
has_agent(trial_of_nutrients_lagtime_c00262,c00262).
metabolite(c00262).
has_proposition(trial_of_nutrients_lagtime_c00262_1,trial_of_nutrients_lagtime_c00262_1_design).
design(trial_of_nutrients_lagtime_c00262_1_design).
has_proposition(trial_of_nutrients_lagtime_c00262_1_design,trial_of_nutrients_lagtime_c00262_1_factor).
factor(trial_of_nutrients_lagtime_c00262_1_factor).
has_representation(trial_of_nutrients_lagtime_c00262_1_factor,'presence or absence of c00262').
has_input(trial_of_nutrients_lagtime_c00262_1,trial_of_nutrients_lagtime_c00262_1_data).
data(trial_of_nutrients_lagtime_c00262_1_data).
has_part(trial_of_nutrients_lagtime_c00262_1_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00262_1_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00262_1_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00262_1,'mar07-trial6_expt001-plate002').
plate('mar07-trial6_expt001-plate002').
has_proposition(trial_of_nutrients_lagtime_c00262_1,trial_of_nutrients_lagtime_c00262_1_result).
result(trial_of_nutrients_lagtime_c00262_1_result).
has_part(trial_of_nutrients_lagtime_c00262_1_result,trial_of_nutrients_lagtime_c00262_1_result_1).
has_representation(trial_of_nutrients_lagtime_c00262_1_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00262_1_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00262_1_result_1,trial_of_nutrients_lagtime_c00262_1_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00262_1_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00262_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00262_1_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00262_1_result,trial_of_nutrients_lagtime_c00262_1_result_2).
has_representation(trial_of_nutrients_lagtime_c00262_1_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00262_1_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00262_1_result_2,trial_of_nutrients_lagtime_c00262_1_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00262_1_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00262_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00262_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00262,trial_of_nutrients_lagtime_c00262_results).
result(trial_of_nutrients_lagtime_c00262_results).
has_part(trial_of_nutrients_lagtime_c00262_results,trial_of_nutrients_lagtime_c00262_results_1).
has_representation(trial_of_nutrients_lagtime_c00262_results_1,'median of wildtype medians in minimal').
text_representation('median of wildtype medians in minimal').
has_proposition(trial_of_nutrients_lagtime_c00262_results_1,trial_of_nutrients_lagtime_c00262_results_1_proc).
procedure(trial_of_nutrients_lagtime_c00262_results_1_proc).
has_proposition(trial_of_nutrients_lagtime_c00262_results_1_proc,'procedures/remove_dupl_medians_nut.R').
link('procedures/remove_dupl_medians_nut.R').
has_part(trial_of_nutrients_lagtime_c00262_results,trial_of_nutrients_lagtime_c00262_results_2).
has_representation(trial_of_nutrients_lagtime_c00262_results_2,'median of wildtype medians in minimal with metabolite').
text_representation('median of wildtype medians in minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00262_results_2,trial_of_nutrients_lagtime_c00262_results_2_proc).
procedure(trial_of_nutrients_lagtime_c00262_results_2_proc).
has_proposition(trial_of_nutrients_lagtime_c00262_results_2_proc,'procedures/remove_dupl_medians_nut.R').
link('procedures/remove_dupl_medians_nut.R').
has_part(trial_of_nutrients_lagtime_c00262_results,trial_of_nutrients_lagtime_c00262_results_3).
has_representation(trial_of_nutrients_lagtime_c00262_results_3,'difference between trial_of_nutrients_lagtime_c00262_results_1 and trial_of_nutrients_lagtime_c00262_results_2').
text_representation('difference between trial_of_nutrients_lagtime_c00262_results_1 and trial_of_nutrients_lagtime_c00262_results_2').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_result).
result(study_on_rich_growthrate_result).
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_1).
has_representation(study_on_rich_growthrate_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_rich_growthrate_result_1,'results/wr_kr_growth_rate.csv').
link('results/wr_kr_growth_rate.csv').
has_proposition(study_on_rich_growthrate_result_1,study_on_rich_growthrate_result_1_proc).
procedure(study_on_rich_growthrate_result_1_proc).
has_proposition(study_on_rich_growthrate_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_2).
has_representation(study_on_rich_growthrate_result_2,'bar graph (histogram) plotting study_on_rich_growthrate_result_1').
text_representation('bar graph (histogram) plotting study_on_rich_growthrate_result_1').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate1.tiff').
link('results/kr_wr_growth_rate1.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate2.tiff').
link('results/kr_wr_growth_rate2.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/overlayed_growth_rate.tiff').
link('results/overlayed_growth_rate.tiff').
has_proposition(study_on_rich_growthrate_result_2,study_on_rich_growthrate_result_2_proc).
procedure(study_on_rich_growthrate_result_2_proc).
has_proposition(study_on_rich_growthrate_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_conclusion).
conclusion(study_on_rich_growthrate_conclusion).
has_representation(study_on_rich_growthrate_conclusion,'The knockouts have higher growth rate in rich than the wild type').
text_representation('The knockouts have higher growth rate in rich than the wild type').
has_proposition(study_on_rich_growthrate_conclusion,'obtain statistical mode of study_on_rich_growthrate_result_1').
procedure('obtain statistical mode of study_on_rich_growthrate_result_1').
text_representation('obtain statistical mode of study_on_rich_growthrate_result_1').
has_part(study_of_nutrients_lagtime,trial_of_nutrients_lagtime_c00526).
trial(trial_of_nutrients_lagtime_c00526).
has_agent(trial_of_nutrients_lagtime_c00526,c00526).
metabolite(c00526).
has_proposition(trial_of_nutrients_lagtime_c00526_1,trial_of_nutrients_lagtime_c00526_1_design).
design(trial_of_nutrients_lagtime_c00526_1_design).
has_proposition(trial_of_nutrients_lagtime_c00526_1_design,trial_of_nutrients_lagtime_c00526_1_factor).
factor(trial_of_nutrients_lagtime_c00526_1_factor).
has_representation(trial_of_nutrients_lagtime_c00526_1_factor,'presence or absence of c00526').
has_input(trial_of_nutrients_lagtime_c00526_1,trial_of_nutrients_lagtime_c00526_1_data).
data(trial_of_nutrients_lagtime_c00526_1_data).
has_part(trial_of_nutrients_lagtime_c00526_1_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00526_1_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00526_1_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00526_1,'mar07-trial6_expt001-plate001').
plate('mar07-trial6_expt001-plate001').
has_proposition(trial_of_nutrients_lagtime_c00526_1,trial_of_nutrients_lagtime_c00526_1_result).
result(trial_of_nutrients_lagtime_c00526_1_result).
has_part(trial_of_nutrients_lagtime_c00526_1_result,trial_of_nutrients_lagtime_c00526_1_result_1).
has_representation(trial_of_nutrients_lagtime_c00526_1_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00526_1_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00526_1_result_1,trial_of_nutrients_lagtime_c00526_1_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00526_1_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00526_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00526_1_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00526_1_result,trial_of_nutrients_lagtime_c00526_1_result_2).
has_representation(trial_of_nutrients_lagtime_c00526_1_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00526_1_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00526_1_result_2,trial_of_nutrients_lagtime_c00526_1_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00526_1_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00526_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00526_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00526,trial_of_nutrients_lagtime_c00526_results).
result(trial_of_nutrients_lagtime_c00526_results).
has_part(trial_of_nutrients_lagtime_c00526_results,trial_of_nutrients_lagtime_c00526_results_1).
has_representation(trial_of_nutrients_lagtime_c00526_results_1,'median of wildtype medians in minimal').
text_representation('median of wildtype medians in minimal').
has_proposition(trial_of_nutrients_lagtime_c00526_results_1,trial_of_nutrients_lagtime_c00526_results_1_proc).
procedure(trial_of_nutrients_lagtime_c00526_results_1_proc).
has_proposition(trial_of_nutrients_lagtime_c00526_results_1_proc,'procedures/remove_dupl_medians_nut.R').
link('procedures/remove_dupl_medians_nut.R').
has_part(trial_of_nutrients_lagtime_c00526_results,trial_of_nutrients_lagtime_c00526_results_2).
has_representation(trial_of_nutrients_lagtime_c00526_results_2,'median of wildtype medians in minimal with metabolite').
text_representation('median of wildtype medians in minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00526_results_2,trial_of_nutrients_lagtime_c00526_results_2_proc).
procedure(trial_of_nutrients_lagtime_c00526_results_2_proc).
has_proposition(trial_of_nutrients_lagtime_c00526_results_2_proc,'procedures/remove_dupl_medians_nut.R').
link('procedures/remove_dupl_medians_nut.R').
has_part(trial_of_nutrients_lagtime_c00526_results,trial_of_nutrients_lagtime_c00526_results_3).
has_representation(trial_of_nutrients_lagtime_c00526_results_3,'difference between trial_of_nutrients_lagtime_c00526_results_1 and trial_of_nutrients_lagtime_c00526_results_2').
text_representation('difference between trial_of_nutrients_lagtime_c00526_results_1 and trial_of_nutrients_lagtime_c00526_results_2').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_result).
result(study_on_rich_growthrate_result).
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_1).
has_representation(study_on_rich_growthrate_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_rich_growthrate_result_1,'results/wr_kr_growth_rate.csv').
link('results/wr_kr_growth_rate.csv').
has_proposition(study_on_rich_growthrate_result_1,study_on_rich_growthrate_result_1_proc).
procedure(study_on_rich_growthrate_result_1_proc).
has_proposition(study_on_rich_growthrate_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_2).
has_representation(study_on_rich_growthrate_result_2,'bar graph (histogram) plotting study_on_rich_growthrate_result_1').
text_representation('bar graph (histogram) plotting study_on_rich_growthrate_result_1').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate1.tiff').
link('results/kr_wr_growth_rate1.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate2.tiff').
link('results/kr_wr_growth_rate2.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/overlayed_growth_rate.tiff').
link('results/overlayed_growth_rate.tiff').
has_proposition(study_on_rich_growthrate_result_2,study_on_rich_growthrate_result_2_proc).
procedure(study_on_rich_growthrate_result_2_proc).
has_proposition(study_on_rich_growthrate_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_conclusion).
conclusion(study_on_rich_growthrate_conclusion).
has_representation(study_on_rich_growthrate_conclusion,'The knockouts have higher growth rate in rich than the wild type').
text_representation('The knockouts have higher growth rate in rich than the wild type').
has_proposition(study_on_rich_growthrate_conclusion,'obtain statistical mode of study_on_rich_growthrate_result_1').
procedure('obtain statistical mode of study_on_rich_growthrate_result_1').
text_representation('obtain statistical mode of study_on_rich_growthrate_result_1').
has_part(study_of_nutrients_lagtime,trial_of_nutrients_lagtime_c00387).
trial(trial_of_nutrients_lagtime_c00387).
has_agent(trial_of_nutrients_lagtime_c00387,c00387).
metabolite(c00387).
has_proposition(trial_of_nutrients_lagtime_c00387_1,trial_of_nutrients_lagtime_c00387_1_design).
design(trial_of_nutrients_lagtime_c00387_1_design).
has_proposition(trial_of_nutrients_lagtime_c00387_1_design,trial_of_nutrients_lagtime_c00387_1_factor).
factor(trial_of_nutrients_lagtime_c00387_1_factor).
has_representation(trial_of_nutrients_lagtime_c00387_1_factor,'presence or absence of c00387').
has_input(trial_of_nutrients_lagtime_c00387_1,trial_of_nutrients_lagtime_c00387_1_data).
data(trial_of_nutrients_lagtime_c00387_1_data).
has_part(trial_of_nutrients_lagtime_c00387_1_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00387_1_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00387_1_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00387_1,'mar07-trial1_expt001-plate003').
plate('mar07-trial1_expt001-plate003').
has_proposition(trial_of_nutrients_lagtime_c00387_1,trial_of_nutrients_lagtime_c00387_1_result).
result(trial_of_nutrients_lagtime_c00387_1_result).
has_part(trial_of_nutrients_lagtime_c00387_1_result,trial_of_nutrients_lagtime_c00387_1_result_1).
has_representation(trial_of_nutrients_lagtime_c00387_1_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00387_1_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00387_1_result_1,trial_of_nutrients_lagtime_c00387_1_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00387_1_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00387_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00387_1_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00387_1_result,trial_of_nutrients_lagtime_c00387_1_result_2).
has_representation(trial_of_nutrients_lagtime_c00387_1_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00387_1_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00387_1_result_2,trial_of_nutrients_lagtime_c00387_1_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00387_1_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00387_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00387_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00387_2,trial_of_nutrients_lagtime_c00387_2_design).
design(trial_of_nutrients_lagtime_c00387_2_design).
has_proposition(trial_of_nutrients_lagtime_c00387_2_design,trial_of_nutrients_lagtime_c00387_2_factor).
factor(trial_of_nutrients_lagtime_c00387_2_factor).
has_representation(trial_of_nutrients_lagtime_c00387_2_factor,'presence or absence of c00387').
has_input(trial_of_nutrients_lagtime_c00387_2,trial_of_nutrients_lagtime_c00387_2_data).
data(trial_of_nutrients_lagtime_c00387_2_data).
has_part(trial_of_nutrients_lagtime_c00387_2_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00387_2_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00387_2_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00387_2,'mar07-trial3_expt001-plate003').
plate('mar07-trial3_expt001-plate003').
has_proposition(trial_of_nutrients_lagtime_c00387_2,trial_of_nutrients_lagtime_c00387_2_result).
result(trial_of_nutrients_lagtime_c00387_2_result).
has_part(trial_of_nutrients_lagtime_c00387_2_result,trial_of_nutrients_lagtime_c00387_2_result_1).
has_representation(trial_of_nutrients_lagtime_c00387_2_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00387_2_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00387_2_result_1,trial_of_nutrients_lagtime_c00387_2_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00387_2_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00387_2_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00387_2_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00387_2_result,trial_of_nutrients_lagtime_c00387_2_result_2).
has_representation(trial_of_nutrients_lagtime_c00387_2_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00387_2_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00387_2_result_2,trial_of_nutrients_lagtime_c00387_2_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00387_2_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00387_2_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00387_2_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00387,trial_of_nutrients_lagtime_c00387_results).
result(trial_of_nutrients_lagtime_c00387_results).
has_part(trial_of_nutrients_lagtime_c00387_results,trial_of_nutrients_lagtime_c00387_results_1).
has_representation(trial_of_nutrients_lagtime_c00387_results_1,'median of wildtype medians in minimal').
text_representation('median of wildtype medians in minimal').
has_proposition(trial_of_nutrients_lagtime_c00387_results_1,trial_of_nutrients_lagtime_c00387_results_1_proc).
procedure(trial_of_nutrients_lagtime_c00387_results_1_proc).
has_proposition(trial_of_nutrients_lagtime_c00387_results_1_proc,'procedures/remove_dupl_medians_nut.R').
link('procedures/remove_dupl_medians_nut.R').
has_part(trial_of_nutrients_lagtime_c00387_results,trial_of_nutrients_lagtime_c00387_results_2).
has_representation(trial_of_nutrients_lagtime_c00387_results_2,'median of wildtype medians in minimal with metabolite').
text_representation('median of wildtype medians in minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00387_results_2,trial_of_nutrients_lagtime_c00387_results_2_proc).
procedure(trial_of_nutrients_lagtime_c00387_results_2_proc).
has_proposition(trial_of_nutrients_lagtime_c00387_results_2_proc,'procedures/remove_dupl_medians_nut.R').
link('procedures/remove_dupl_medians_nut.R').
has_part(trial_of_nutrients_lagtime_c00387_results,trial_of_nutrients_lagtime_c00387_results_3).
has_representation(trial_of_nutrients_lagtime_c00387_results_3,'difference between trial_of_nutrients_lagtime_c00387_results_1 and trial_of_nutrients_lagtime_c00387_results_2').
text_representation('difference between trial_of_nutrients_lagtime_c00387_results_1 and trial_of_nutrients_lagtime_c00387_results_2').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_result).
result(study_on_rich_growthrate_result).
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_1).
has_representation(study_on_rich_growthrate_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_rich_growthrate_result_1,'results/wr_kr_growth_rate.csv').
link('results/wr_kr_growth_rate.csv').
has_proposition(study_on_rich_growthrate_result_1,study_on_rich_growthrate_result_1_proc).
procedure(study_on_rich_growthrate_result_1_proc).
has_proposition(study_on_rich_growthrate_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_2).
has_representation(study_on_rich_growthrate_result_2,'bar graph (histogram) plotting study_on_rich_growthrate_result_1').
text_representation('bar graph (histogram) plotting study_on_rich_growthrate_result_1').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate1.tiff').
link('results/kr_wr_growth_rate1.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate2.tiff').
link('results/kr_wr_growth_rate2.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/overlayed_growth_rate.tiff').
link('results/overlayed_growth_rate.tiff').
has_proposition(study_on_rich_growthrate_result_2,study_on_rich_growthrate_result_2_proc).
procedure(study_on_rich_growthrate_result_2_proc).
has_proposition(study_on_rich_growthrate_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_conclusion).
conclusion(study_on_rich_growthrate_conclusion).
has_representation(study_on_rich_growthrate_conclusion,'The knockouts have higher growth rate in rich than the wild type').
text_representation('The knockouts have higher growth rate in rich than the wild type').
has_proposition(study_on_rich_growthrate_conclusion,'obtain statistical mode of study_on_rich_growthrate_result_1').
procedure('obtain statistical mode of study_on_rich_growthrate_result_1').
text_representation('obtain statistical mode of study_on_rich_growthrate_result_1').
has_part(study_of_nutrients_lagtime,trial_of_nutrients_lagtime_c00449).
trial(trial_of_nutrients_lagtime_c00449).
has_agent(trial_of_nutrients_lagtime_c00449,c00449).
metabolite(c00449).
has_proposition(trial_of_nutrients_lagtime_c00449_1,trial_of_nutrients_lagtime_c00449_1_design).
design(trial_of_nutrients_lagtime_c00449_1_design).
has_proposition(trial_of_nutrients_lagtime_c00449_1_design,trial_of_nutrients_lagtime_c00449_1_factor).
factor(trial_of_nutrients_lagtime_c00449_1_factor).
has_representation(trial_of_nutrients_lagtime_c00449_1_factor,'presence or absence of c00449').
has_input(trial_of_nutrients_lagtime_c00449_1,trial_of_nutrients_lagtime_c00449_1_data).
data(trial_of_nutrients_lagtime_c00449_1_data).
has_part(trial_of_nutrients_lagtime_c00449_1_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00449_1_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00449_1_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00449_1,'jan07-lysd1_expt001-plate002').
plate('jan07-lysd1_expt001-plate002').
has_proposition(trial_of_nutrients_lagtime_c00449_1,trial_of_nutrients_lagtime_c00449_1_result).
result(trial_of_nutrients_lagtime_c00449_1_result).
has_part(trial_of_nutrients_lagtime_c00449_1_result,trial_of_nutrients_lagtime_c00449_1_result_1).
has_representation(trial_of_nutrients_lagtime_c00449_1_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00449_1_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00449_1_result_1,trial_of_nutrients_lagtime_c00449_1_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00449_1_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00449_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00449_1_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00449_1_result,trial_of_nutrients_lagtime_c00449_1_result_2).
has_representation(trial_of_nutrients_lagtime_c00449_1_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00449_1_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00449_1_result_2,trial_of_nutrients_lagtime_c00449_1_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00449_1_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00449_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00449_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00449_2,trial_of_nutrients_lagtime_c00449_2_design).
design(trial_of_nutrients_lagtime_c00449_2_design).
has_proposition(trial_of_nutrients_lagtime_c00449_2_design,trial_of_nutrients_lagtime_c00449_2_factor).
factor(trial_of_nutrients_lagtime_c00449_2_factor).
has_representation(trial_of_nutrients_lagtime_c00449_2_factor,'presence or absence of c00449').
has_input(trial_of_nutrients_lagtime_c00449_2,trial_of_nutrients_lagtime_c00449_2_data).
data(trial_of_nutrients_lagtime_c00449_2_data).
has_part(trial_of_nutrients_lagtime_c00449_2_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00449_2_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00449_2_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00449_2,'jan07-lysd1_expt001-plate005').
plate('jan07-lysd1_expt001-plate005').
has_proposition(trial_of_nutrients_lagtime_c00449_2,trial_of_nutrients_lagtime_c00449_2_result).
result(trial_of_nutrients_lagtime_c00449_2_result).
has_part(trial_of_nutrients_lagtime_c00449_2_result,trial_of_nutrients_lagtime_c00449_2_result_1).
has_representation(trial_of_nutrients_lagtime_c00449_2_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00449_2_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00449_2_result_1,trial_of_nutrients_lagtime_c00449_2_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00449_2_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00449_2_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00449_2_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00449_2_result,trial_of_nutrients_lagtime_c00449_2_result_2).
has_representation(trial_of_nutrients_lagtime_c00449_2_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00449_2_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00449_2_result_2,trial_of_nutrients_lagtime_c00449_2_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00449_2_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00449_2_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00449_2_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00449_3,trial_of_nutrients_lagtime_c00449_3_design).
design(trial_of_nutrients_lagtime_c00449_3_design).
has_proposition(trial_of_nutrients_lagtime_c00449_3_design,trial_of_nutrients_lagtime_c00449_3_factor).
factor(trial_of_nutrients_lagtime_c00449_3_factor).
has_representation(trial_of_nutrients_lagtime_c00449_3_factor,'presence or absence of c00449').
has_input(trial_of_nutrients_lagtime_c00449_3,trial_of_nutrients_lagtime_c00449_3_data).
data(trial_of_nutrients_lagtime_c00449_3_data).
has_part(trial_of_nutrients_lagtime_c00449_3_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00449_3_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00449_3_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00449_3,'jan07-lyss1_expt001-plate002').
plate('jan07-lyss1_expt001-plate002').
has_proposition(trial_of_nutrients_lagtime_c00449_3,trial_of_nutrients_lagtime_c00449_3_result).
result(trial_of_nutrients_lagtime_c00449_3_result).
has_part(trial_of_nutrients_lagtime_c00449_3_result,trial_of_nutrients_lagtime_c00449_3_result_1).
has_representation(trial_of_nutrients_lagtime_c00449_3_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00449_3_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00449_3_result_1,trial_of_nutrients_lagtime_c00449_3_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00449_3_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00449_3_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00449_3_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00449_3_result,trial_of_nutrients_lagtime_c00449_3_result_2).
has_representation(trial_of_nutrients_lagtime_c00449_3_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00449_3_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00449_3_result_2,trial_of_nutrients_lagtime_c00449_3_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00449_3_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00449_3_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00449_3_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00449_4,trial_of_nutrients_lagtime_c00449_4_design).
design(trial_of_nutrients_lagtime_c00449_4_design).
has_proposition(trial_of_nutrients_lagtime_c00449_4_design,trial_of_nutrients_lagtime_c00449_4_factor).
factor(trial_of_nutrients_lagtime_c00449_4_factor).
has_representation(trial_of_nutrients_lagtime_c00449_4_factor,'presence or absence of c00449').
has_input(trial_of_nutrients_lagtime_c00449_4,trial_of_nutrients_lagtime_c00449_4_data).
data(trial_of_nutrients_lagtime_c00449_4_data).
has_part(trial_of_nutrients_lagtime_c00449_4_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00449_4_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00449_4_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00449_4,'jan07-lyss1_expt001-plate005').
plate('jan07-lyss1_expt001-plate005').
has_proposition(trial_of_nutrients_lagtime_c00449_4,trial_of_nutrients_lagtime_c00449_4_result).
result(trial_of_nutrients_lagtime_c00449_4_result).
has_part(trial_of_nutrients_lagtime_c00449_4_result,trial_of_nutrients_lagtime_c00449_4_result_1).
has_representation(trial_of_nutrients_lagtime_c00449_4_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00449_4_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00449_4_result_1,trial_of_nutrients_lagtime_c00449_4_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00449_4_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00449_4_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00449_4_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00449_4_result,trial_of_nutrients_lagtime_c00449_4_result_2).
has_representation(trial_of_nutrients_lagtime_c00449_4_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00449_4_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00449_4_result_2,trial_of_nutrients_lagtime_c00449_4_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00449_4_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00449_4_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00449_4_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00449_5,trial_of_nutrients_lagtime_c00449_5_design).
design(trial_of_nutrients_lagtime_c00449_5_design).
has_proposition(trial_of_nutrients_lagtime_c00449_5_design,trial_of_nutrients_lagtime_c00449_5_factor).
factor(trial_of_nutrients_lagtime_c00449_5_factor).
has_representation(trial_of_nutrients_lagtime_c00449_5_factor,'presence or absence of c00449').
has_input(trial_of_nutrients_lagtime_c00449_5,trial_of_nutrients_lagtime_c00449_5_data).
data(trial_of_nutrients_lagtime_c00449_5_data).
has_part(trial_of_nutrients_lagtime_c00449_5_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00449_5_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00449_5_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00449_5,'jan07-lyss1_expt001-plate008').
plate('jan07-lyss1_expt001-plate008').
has_proposition(trial_of_nutrients_lagtime_c00449_5,trial_of_nutrients_lagtime_c00449_5_result).
result(trial_of_nutrients_lagtime_c00449_5_result).
has_part(trial_of_nutrients_lagtime_c00449_5_result,trial_of_nutrients_lagtime_c00449_5_result_1).
has_representation(trial_of_nutrients_lagtime_c00449_5_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00449_5_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00449_5_result_1,trial_of_nutrients_lagtime_c00449_5_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00449_5_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00449_5_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00449_5_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00449_5_result,trial_of_nutrients_lagtime_c00449_5_result_2).
has_representation(trial_of_nutrients_lagtime_c00449_5_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00449_5_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00449_5_result_2,trial_of_nutrients_lagtime_c00449_5_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00449_5_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00449_5_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00449_5_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00449_6,trial_of_nutrients_lagtime_c00449_6_design).
design(trial_of_nutrients_lagtime_c00449_6_design).
has_proposition(trial_of_nutrients_lagtime_c00449_6_design,trial_of_nutrients_lagtime_c00449_6_factor).
factor(trial_of_nutrients_lagtime_c00449_6_factor).
has_representation(trial_of_nutrients_lagtime_c00449_6_factor,'presence or absence of c00449').
has_input(trial_of_nutrients_lagtime_c00449_6,trial_of_nutrients_lagtime_c00449_6_data).
data(trial_of_nutrients_lagtime_c00449_6_data).
has_part(trial_of_nutrients_lagtime_c00449_6_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00449_6_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00449_6_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00449_6,'trial-130407_expt001-plate002').
plate('trial-130407_expt001-plate002').
has_proposition(trial_of_nutrients_lagtime_c00449_6,trial_of_nutrients_lagtime_c00449_6_result).
result(trial_of_nutrients_lagtime_c00449_6_result).
has_part(trial_of_nutrients_lagtime_c00449_6_result,trial_of_nutrients_lagtime_c00449_6_result_1).
has_representation(trial_of_nutrients_lagtime_c00449_6_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00449_6_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00449_6_result_1,trial_of_nutrients_lagtime_c00449_6_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00449_6_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00449_6_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00449_6_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00449_6_result,trial_of_nutrients_lagtime_c00449_6_result_2).
has_representation(trial_of_nutrients_lagtime_c00449_6_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00449_6_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00449_6_result_2,trial_of_nutrients_lagtime_c00449_6_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00449_6_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00449_6_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00449_6_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00449_7,trial_of_nutrients_lagtime_c00449_7_design).
design(trial_of_nutrients_lagtime_c00449_7_design).
has_proposition(trial_of_nutrients_lagtime_c00449_7_design,trial_of_nutrients_lagtime_c00449_7_factor).
factor(trial_of_nutrients_lagtime_c00449_7_factor).
has_representation(trial_of_nutrients_lagtime_c00449_7_factor,'presence or absence of c00449').
has_input(trial_of_nutrients_lagtime_c00449_7,trial_of_nutrients_lagtime_c00449_7_data).
data(trial_of_nutrients_lagtime_c00449_7_data).
has_part(trial_of_nutrients_lagtime_c00449_7_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00449_7_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00449_7_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00449_7,'trial-130407_expt001-plate005').
plate('trial-130407_expt001-plate005').
has_proposition(trial_of_nutrients_lagtime_c00449_7,trial_of_nutrients_lagtime_c00449_7_result).
result(trial_of_nutrients_lagtime_c00449_7_result).
has_part(trial_of_nutrients_lagtime_c00449_7_result,trial_of_nutrients_lagtime_c00449_7_result_1).
has_representation(trial_of_nutrients_lagtime_c00449_7_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00449_7_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00449_7_result_1,trial_of_nutrients_lagtime_c00449_7_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00449_7_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00449_7_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00449_7_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00449_7_result,trial_of_nutrients_lagtime_c00449_7_result_2).
has_representation(trial_of_nutrients_lagtime_c00449_7_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00449_7_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00449_7_result_2,trial_of_nutrients_lagtime_c00449_7_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00449_7_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00449_7_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00449_7_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00449,trial_of_nutrients_lagtime_c00449_results).
result(trial_of_nutrients_lagtime_c00449_results).
has_part(trial_of_nutrients_lagtime_c00449_results,trial_of_nutrients_lagtime_c00449_results_1).
has_representation(trial_of_nutrients_lagtime_c00449_results_1,'median of wildtype medians in minimal').
text_representation('median of wildtype medians in minimal').
has_proposition(trial_of_nutrients_lagtime_c00449_results_1,trial_of_nutrients_lagtime_c00449_results_1_proc).
procedure(trial_of_nutrients_lagtime_c00449_results_1_proc).
has_proposition(trial_of_nutrients_lagtime_c00449_results_1_proc,'procedures/remove_dupl_medians_nut.R').
link('procedures/remove_dupl_medians_nut.R').
has_part(trial_of_nutrients_lagtime_c00449_results,trial_of_nutrients_lagtime_c00449_results_2).
has_representation(trial_of_nutrients_lagtime_c00449_results_2,'median of wildtype medians in minimal with metabolite').
text_representation('median of wildtype medians in minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00449_results_2,trial_of_nutrients_lagtime_c00449_results_2_proc).
procedure(trial_of_nutrients_lagtime_c00449_results_2_proc).
has_proposition(trial_of_nutrients_lagtime_c00449_results_2_proc,'procedures/remove_dupl_medians_nut.R').
link('procedures/remove_dupl_medians_nut.R').
has_part(trial_of_nutrients_lagtime_c00449_results,trial_of_nutrients_lagtime_c00449_results_3).
has_representation(trial_of_nutrients_lagtime_c00449_results_3,'difference between trial_of_nutrients_lagtime_c00449_results_1 and trial_of_nutrients_lagtime_c00449_results_2').
text_representation('difference between trial_of_nutrients_lagtime_c00449_results_1 and trial_of_nutrients_lagtime_c00449_results_2').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_result).
result(study_on_rich_growthrate_result).
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_1).
has_representation(study_on_rich_growthrate_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_rich_growthrate_result_1,'results/wr_kr_growth_rate.csv').
link('results/wr_kr_growth_rate.csv').
has_proposition(study_on_rich_growthrate_result_1,study_on_rich_growthrate_result_1_proc).
procedure(study_on_rich_growthrate_result_1_proc).
has_proposition(study_on_rich_growthrate_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_2).
has_representation(study_on_rich_growthrate_result_2,'bar graph (histogram) plotting study_on_rich_growthrate_result_1').
text_representation('bar graph (histogram) plotting study_on_rich_growthrate_result_1').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate1.tiff').
link('results/kr_wr_growth_rate1.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate2.tiff').
link('results/kr_wr_growth_rate2.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/overlayed_growth_rate.tiff').
link('results/overlayed_growth_rate.tiff').
has_proposition(study_on_rich_growthrate_result_2,study_on_rich_growthrate_result_2_proc).
procedure(study_on_rich_growthrate_result_2_proc).
has_proposition(study_on_rich_growthrate_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_conclusion).
conclusion(study_on_rich_growthrate_conclusion).
has_representation(study_on_rich_growthrate_conclusion,'The knockouts have higher growth rate in rich than the wild type').
text_representation('The knockouts have higher growth rate in rich than the wild type').
has_proposition(study_on_rich_growthrate_conclusion,'obtain statistical mode of study_on_rich_growthrate_result_1').
procedure('obtain statistical mode of study_on_rich_growthrate_result_1').
text_representation('obtain statistical mode of study_on_rich_growthrate_result_1').
has_part(study_of_nutrients_lagtime,trial_of_nutrients_lagtime_c00164).
trial(trial_of_nutrients_lagtime_c00164).
has_agent(trial_of_nutrients_lagtime_c00164,c00164).
metabolite(c00164).
has_proposition(trial_of_nutrients_lagtime_c00164_1,trial_of_nutrients_lagtime_c00164_1_design).
design(trial_of_nutrients_lagtime_c00164_1_design).
has_proposition(trial_of_nutrients_lagtime_c00164_1_design,trial_of_nutrients_lagtime_c00164_1_factor).
factor(trial_of_nutrients_lagtime_c00164_1_factor).
has_representation(trial_of_nutrients_lagtime_c00164_1_factor,'presence or absence of c00164').
has_input(trial_of_nutrients_lagtime_c00164_1,trial_of_nutrients_lagtime_c00164_1_data).
data(trial_of_nutrients_lagtime_c00164_1_data).
has_part(trial_of_nutrients_lagtime_c00164_1_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00164_1_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00164_1_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00164_1,'mar07-trial4_expt1-plate001').
plate('mar07-trial4_expt1-plate001').
has_proposition(trial_of_nutrients_lagtime_c00164_1,trial_of_nutrients_lagtime_c00164_1_result).
result(trial_of_nutrients_lagtime_c00164_1_result).
has_part(trial_of_nutrients_lagtime_c00164_1_result,trial_of_nutrients_lagtime_c00164_1_result_1).
has_representation(trial_of_nutrients_lagtime_c00164_1_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00164_1_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00164_1_result_1,trial_of_nutrients_lagtime_c00164_1_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00164_1_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00164_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00164_1_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00164_1_result,trial_of_nutrients_lagtime_c00164_1_result_2).
has_representation(trial_of_nutrients_lagtime_c00164_1_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00164_1_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00164_1_result_2,trial_of_nutrients_lagtime_c00164_1_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00164_1_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00164_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00164_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00164,trial_of_nutrients_lagtime_c00164_results).
result(trial_of_nutrients_lagtime_c00164_results).
has_part(trial_of_nutrients_lagtime_c00164_results,trial_of_nutrients_lagtime_c00164_results_1).
has_representation(trial_of_nutrients_lagtime_c00164_results_1,'median of wildtype medians in minimal').
text_representation('median of wildtype medians in minimal').
has_proposition(trial_of_nutrients_lagtime_c00164_results_1,trial_of_nutrients_lagtime_c00164_results_1_proc).
procedure(trial_of_nutrients_lagtime_c00164_results_1_proc).
has_proposition(trial_of_nutrients_lagtime_c00164_results_1_proc,'procedures/remove_dupl_medians_nut.R').
link('procedures/remove_dupl_medians_nut.R').
has_part(trial_of_nutrients_lagtime_c00164_results,trial_of_nutrients_lagtime_c00164_results_2).
has_representation(trial_of_nutrients_lagtime_c00164_results_2,'median of wildtype medians in minimal with metabolite').
text_representation('median of wildtype medians in minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00164_results_2,trial_of_nutrients_lagtime_c00164_results_2_proc).
procedure(trial_of_nutrients_lagtime_c00164_results_2_proc).
has_proposition(trial_of_nutrients_lagtime_c00164_results_2_proc,'procedures/remove_dupl_medians_nut.R').
link('procedures/remove_dupl_medians_nut.R').
has_part(trial_of_nutrients_lagtime_c00164_results,trial_of_nutrients_lagtime_c00164_results_3).
has_representation(trial_of_nutrients_lagtime_c00164_results_3,'difference between trial_of_nutrients_lagtime_c00164_results_1 and trial_of_nutrients_lagtime_c00164_results_2').
text_representation('difference between trial_of_nutrients_lagtime_c00164_results_1 and trial_of_nutrients_lagtime_c00164_results_2').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_result).
result(study_on_rich_growthrate_result).
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_1).
has_representation(study_on_rich_growthrate_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_rich_growthrate_result_1,'results/wr_kr_growth_rate.csv').
link('results/wr_kr_growth_rate.csv').
has_proposition(study_on_rich_growthrate_result_1,study_on_rich_growthrate_result_1_proc).
procedure(study_on_rich_growthrate_result_1_proc).
has_proposition(study_on_rich_growthrate_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_2).
has_representation(study_on_rich_growthrate_result_2,'bar graph (histogram) plotting study_on_rich_growthrate_result_1').
text_representation('bar graph (histogram) plotting study_on_rich_growthrate_result_1').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate1.tiff').
link('results/kr_wr_growth_rate1.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate2.tiff').
link('results/kr_wr_growth_rate2.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/overlayed_growth_rate.tiff').
link('results/overlayed_growth_rate.tiff').
has_proposition(study_on_rich_growthrate_result_2,study_on_rich_growthrate_result_2_proc).
procedure(study_on_rich_growthrate_result_2_proc).
has_proposition(study_on_rich_growthrate_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_conclusion).
conclusion(study_on_rich_growthrate_conclusion).
has_representation(study_on_rich_growthrate_conclusion,'The knockouts have higher growth rate in rich than the wild type').
text_representation('The knockouts have higher growth rate in rich than the wild type').
has_proposition(study_on_rich_growthrate_conclusion,'obtain statistical mode of study_on_rich_growthrate_result_1').
procedure('obtain statistical mode of study_on_rich_growthrate_result_1').
text_representation('obtain statistical mode of study_on_rich_growthrate_result_1').
has_part(study_of_nutrients_lagtime,trial_of_nutrients_lagtime_c00042).
trial(trial_of_nutrients_lagtime_c00042).
has_agent(trial_of_nutrients_lagtime_c00042,c00042).
metabolite(c00042).
has_proposition(trial_of_nutrients_lagtime_c00042_1,trial_of_nutrients_lagtime_c00042_1_design).
design(trial_of_nutrients_lagtime_c00042_1_design).
has_proposition(trial_of_nutrients_lagtime_c00042_1_design,trial_of_nutrients_lagtime_c00042_1_factor).
factor(trial_of_nutrients_lagtime_c00042_1_factor).
has_representation(trial_of_nutrients_lagtime_c00042_1_factor,'presence or absence of c00042').
has_input(trial_of_nutrients_lagtime_c00042_1,trial_of_nutrients_lagtime_c00042_1_data).
data(trial_of_nutrients_lagtime_c00042_1_data).
has_part(trial_of_nutrients_lagtime_c00042_1_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00042_1_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00042_1_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00042_1,'mar07-trial9_expt001-plate001').
plate('mar07-trial9_expt001-plate001').
has_proposition(trial_of_nutrients_lagtime_c00042_1,trial_of_nutrients_lagtime_c00042_1_result).
result(trial_of_nutrients_lagtime_c00042_1_result).
has_part(trial_of_nutrients_lagtime_c00042_1_result,trial_of_nutrients_lagtime_c00042_1_result_1).
has_representation(trial_of_nutrients_lagtime_c00042_1_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00042_1_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00042_1_result_1,trial_of_nutrients_lagtime_c00042_1_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00042_1_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00042_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00042_1_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00042_1_result,trial_of_nutrients_lagtime_c00042_1_result_2).
has_representation(trial_of_nutrients_lagtime_c00042_1_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00042_1_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00042_1_result_2,trial_of_nutrients_lagtime_c00042_1_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00042_1_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00042_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00042_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00042,trial_of_nutrients_lagtime_c00042_results).
result(trial_of_nutrients_lagtime_c00042_results).
has_part(trial_of_nutrients_lagtime_c00042_results,trial_of_nutrients_lagtime_c00042_results_1).
has_representation(trial_of_nutrients_lagtime_c00042_results_1,'median of wildtype medians in minimal').
text_representation('median of wildtype medians in minimal').
has_proposition(trial_of_nutrients_lagtime_c00042_results_1,trial_of_nutrients_lagtime_c00042_results_1_proc).
procedure(trial_of_nutrients_lagtime_c00042_results_1_proc).
has_proposition(trial_of_nutrients_lagtime_c00042_results_1_proc,'procedures/remove_dupl_medians_nut.R').
link('procedures/remove_dupl_medians_nut.R').
has_part(trial_of_nutrients_lagtime_c00042_results,trial_of_nutrients_lagtime_c00042_results_2).
has_representation(trial_of_nutrients_lagtime_c00042_results_2,'median of wildtype medians in minimal with metabolite').
text_representation('median of wildtype medians in minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00042_results_2,trial_of_nutrients_lagtime_c00042_results_2_proc).
procedure(trial_of_nutrients_lagtime_c00042_results_2_proc).
has_proposition(trial_of_nutrients_lagtime_c00042_results_2_proc,'procedures/remove_dupl_medians_nut.R').
link('procedures/remove_dupl_medians_nut.R').
has_part(trial_of_nutrients_lagtime_c00042_results,trial_of_nutrients_lagtime_c00042_results_3).
has_representation(trial_of_nutrients_lagtime_c00042_results_3,'difference between trial_of_nutrients_lagtime_c00042_results_1 and trial_of_nutrients_lagtime_c00042_results_2').
text_representation('difference between trial_of_nutrients_lagtime_c00042_results_1 and trial_of_nutrients_lagtime_c00042_results_2').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_result).
result(study_on_rich_growthrate_result).
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_1).
has_representation(study_on_rich_growthrate_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_rich_growthrate_result_1,'results/wr_kr_growth_rate.csv').
link('results/wr_kr_growth_rate.csv').
has_proposition(study_on_rich_growthrate_result_1,study_on_rich_growthrate_result_1_proc).
procedure(study_on_rich_growthrate_result_1_proc).
has_proposition(study_on_rich_growthrate_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_2).
has_representation(study_on_rich_growthrate_result_2,'bar graph (histogram) plotting study_on_rich_growthrate_result_1').
text_representation('bar graph (histogram) plotting study_on_rich_growthrate_result_1').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate1.tiff').
link('results/kr_wr_growth_rate1.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate2.tiff').
link('results/kr_wr_growth_rate2.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/overlayed_growth_rate.tiff').
link('results/overlayed_growth_rate.tiff').
has_proposition(study_on_rich_growthrate_result_2,study_on_rich_growthrate_result_2_proc).
procedure(study_on_rich_growthrate_result_2_proc).
has_proposition(study_on_rich_growthrate_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_conclusion).
conclusion(study_on_rich_growthrate_conclusion).
has_representation(study_on_rich_growthrate_conclusion,'The knockouts have higher growth rate in rich than the wild type').
text_representation('The knockouts have higher growth rate in rich than the wild type').
has_proposition(study_on_rich_growthrate_conclusion,'obtain statistical mode of study_on_rich_growthrate_result_1').
procedure('obtain statistical mode of study_on_rich_growthrate_result_1').
text_representation('obtain statistical mode of study_on_rich_growthrate_result_1').
has_part(study_of_nutrients_lagtime,trial_of_nutrients_lagtime_c00166).
trial(trial_of_nutrients_lagtime_c00166).
has_agent(trial_of_nutrients_lagtime_c00166,c00166).
metabolite(c00166).
has_proposition(trial_of_nutrients_lagtime_c00166_1,trial_of_nutrients_lagtime_c00166_1_design).
design(trial_of_nutrients_lagtime_c00166_1_design).
has_proposition(trial_of_nutrients_lagtime_c00166_1_design,trial_of_nutrients_lagtime_c00166_1_factor).
factor(trial_of_nutrients_lagtime_c00166_1_factor).
has_representation(trial_of_nutrients_lagtime_c00166_1_factor,'presence or absence of c00166').
has_input(trial_of_nutrients_lagtime_c00166_1,trial_of_nutrients_lagtime_c00166_1_data).
data(trial_of_nutrients_lagtime_c00166_1_data).
has_part(trial_of_nutrients_lagtime_c00166_1_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00166_1_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00166_1_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00166_1,'nature-loop3_expt002-plate003').
plate('nature-loop3_expt002-plate003').
has_proposition(trial_of_nutrients_lagtime_c00166_1,trial_of_nutrients_lagtime_c00166_1_result).
result(trial_of_nutrients_lagtime_c00166_1_result).
has_part(trial_of_nutrients_lagtime_c00166_1_result,trial_of_nutrients_lagtime_c00166_1_result_1).
has_representation(trial_of_nutrients_lagtime_c00166_1_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00166_1_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00166_1_result_1,trial_of_nutrients_lagtime_c00166_1_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00166_1_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00166_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00166_1_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00166_1_result,trial_of_nutrients_lagtime_c00166_1_result_2).
has_representation(trial_of_nutrients_lagtime_c00166_1_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00166_1_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00166_1_result_2,trial_of_nutrients_lagtime_c00166_1_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00166_1_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00166_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00166_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00166_2,trial_of_nutrients_lagtime_c00166_2_design).
design(trial_of_nutrients_lagtime_c00166_2_design).
has_proposition(trial_of_nutrients_lagtime_c00166_2_design,trial_of_nutrients_lagtime_c00166_2_factor).
factor(trial_of_nutrients_lagtime_c00166_2_factor).
has_representation(trial_of_nutrients_lagtime_c00166_2_factor,'presence or absence of c00166').
has_input(trial_of_nutrients_lagtime_c00166_2,trial_of_nutrients_lagtime_c00166_2_data).
data(trial_of_nutrients_lagtime_c00166_2_data).
has_part(trial_of_nutrients_lagtime_c00166_2_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00166_2_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00166_2_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00166_2,'nature-loop3_expt004-plate002').
plate('nature-loop3_expt004-plate002').
has_proposition(trial_of_nutrients_lagtime_c00166_2,trial_of_nutrients_lagtime_c00166_2_result).
result(trial_of_nutrients_lagtime_c00166_2_result).
has_part(trial_of_nutrients_lagtime_c00166_2_result,trial_of_nutrients_lagtime_c00166_2_result_1).
has_representation(trial_of_nutrients_lagtime_c00166_2_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00166_2_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00166_2_result_1,trial_of_nutrients_lagtime_c00166_2_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00166_2_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00166_2_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00166_2_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00166_2_result,trial_of_nutrients_lagtime_c00166_2_result_2).
has_representation(trial_of_nutrients_lagtime_c00166_2_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00166_2_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00166_2_result_2,trial_of_nutrients_lagtime_c00166_2_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00166_2_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00166_2_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00166_2_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00166_3,trial_of_nutrients_lagtime_c00166_3_design).
design(trial_of_nutrients_lagtime_c00166_3_design).
has_proposition(trial_of_nutrients_lagtime_c00166_3_design,trial_of_nutrients_lagtime_c00166_3_factor).
factor(trial_of_nutrients_lagtime_c00166_3_factor).
has_representation(trial_of_nutrients_lagtime_c00166_3_factor,'presence or absence of c00166').
has_input(trial_of_nutrients_lagtime_c00166_3,trial_of_nutrients_lagtime_c00166_3_data).
data(trial_of_nutrients_lagtime_c00166_3_data).
has_part(trial_of_nutrients_lagtime_c00166_3_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00166_3_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00166_3_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00166_3,'nature-loop3_expt004-plate004').
plate('nature-loop3_expt004-plate004').
has_proposition(trial_of_nutrients_lagtime_c00166_3,trial_of_nutrients_lagtime_c00166_3_result).
result(trial_of_nutrients_lagtime_c00166_3_result).
has_part(trial_of_nutrients_lagtime_c00166_3_result,trial_of_nutrients_lagtime_c00166_3_result_1).
has_representation(trial_of_nutrients_lagtime_c00166_3_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00166_3_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00166_3_result_1,trial_of_nutrients_lagtime_c00166_3_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00166_3_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00166_3_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00166_3_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00166_3_result,trial_of_nutrients_lagtime_c00166_3_result_2).
has_representation(trial_of_nutrients_lagtime_c00166_3_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00166_3_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00166_3_result_2,trial_of_nutrients_lagtime_c00166_3_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00166_3_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00166_3_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00166_3_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00166_4,trial_of_nutrients_lagtime_c00166_4_design).
design(trial_of_nutrients_lagtime_c00166_4_design).
has_proposition(trial_of_nutrients_lagtime_c00166_4_design,trial_of_nutrients_lagtime_c00166_4_factor).
factor(trial_of_nutrients_lagtime_c00166_4_factor).
has_representation(trial_of_nutrients_lagtime_c00166_4_factor,'presence or absence of c00166').
has_input(trial_of_nutrients_lagtime_c00166_4,trial_of_nutrients_lagtime_c00166_4_data).
data(trial_of_nutrients_lagtime_c00166_4_data).
has_part(trial_of_nutrients_lagtime_c00166_4_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00166_4_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00166_4_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00166_4,'nature-loop3_expt004-plate005').
plate('nature-loop3_expt004-plate005').
has_proposition(trial_of_nutrients_lagtime_c00166_4,trial_of_nutrients_lagtime_c00166_4_result).
result(trial_of_nutrients_lagtime_c00166_4_result).
has_part(trial_of_nutrients_lagtime_c00166_4_result,trial_of_nutrients_lagtime_c00166_4_result_1).
has_representation(trial_of_nutrients_lagtime_c00166_4_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00166_4_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00166_4_result_1,trial_of_nutrients_lagtime_c00166_4_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00166_4_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00166_4_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00166_4_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00166_4_result,trial_of_nutrients_lagtime_c00166_4_result_2).
has_representation(trial_of_nutrients_lagtime_c00166_4_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00166_4_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00166_4_result_2,trial_of_nutrients_lagtime_c00166_4_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00166_4_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00166_4_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00166_4_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00166_5,trial_of_nutrients_lagtime_c00166_5_design).
design(trial_of_nutrients_lagtime_c00166_5_design).
has_proposition(trial_of_nutrients_lagtime_c00166_5_design,trial_of_nutrients_lagtime_c00166_5_factor).
factor(trial_of_nutrients_lagtime_c00166_5_factor).
has_representation(trial_of_nutrients_lagtime_c00166_5_factor,'presence or absence of c00166').
has_input(trial_of_nutrients_lagtime_c00166_5,trial_of_nutrients_lagtime_c00166_5_data).
data(trial_of_nutrients_lagtime_c00166_5_data).
has_part(trial_of_nutrients_lagtime_c00166_5_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00166_5_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00166_5_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00166_5,'nature-loop3_expt004-plate006').
plate('nature-loop3_expt004-plate006').
has_proposition(trial_of_nutrients_lagtime_c00166_5,trial_of_nutrients_lagtime_c00166_5_result).
result(trial_of_nutrients_lagtime_c00166_5_result).
has_part(trial_of_nutrients_lagtime_c00166_5_result,trial_of_nutrients_lagtime_c00166_5_result_1).
has_representation(trial_of_nutrients_lagtime_c00166_5_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00166_5_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00166_5_result_1,trial_of_nutrients_lagtime_c00166_5_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00166_5_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00166_5_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00166_5_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00166_5_result,trial_of_nutrients_lagtime_c00166_5_result_2).
has_representation(trial_of_nutrients_lagtime_c00166_5_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00166_5_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00166_5_result_2,trial_of_nutrients_lagtime_c00166_5_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00166_5_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00166_5_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00166_5_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00166_6,trial_of_nutrients_lagtime_c00166_6_design).
design(trial_of_nutrients_lagtime_c00166_6_design).
has_proposition(trial_of_nutrients_lagtime_c00166_6_design,trial_of_nutrients_lagtime_c00166_6_factor).
factor(trial_of_nutrients_lagtime_c00166_6_factor).
has_representation(trial_of_nutrients_lagtime_c00166_6_factor,'presence or absence of c00166').
has_input(trial_of_nutrients_lagtime_c00166_6,trial_of_nutrients_lagtime_c00166_6_data).
data(trial_of_nutrients_lagtime_c00166_6_data).
has_part(trial_of_nutrients_lagtime_c00166_6_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00166_6_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00166_6_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00166_6,'nature-loop3_expt004-plate007').
plate('nature-loop3_expt004-plate007').
has_proposition(trial_of_nutrients_lagtime_c00166_6,trial_of_nutrients_lagtime_c00166_6_result).
result(trial_of_nutrients_lagtime_c00166_6_result).
has_part(trial_of_nutrients_lagtime_c00166_6_result,trial_of_nutrients_lagtime_c00166_6_result_1).
has_representation(trial_of_nutrients_lagtime_c00166_6_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00166_6_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00166_6_result_1,trial_of_nutrients_lagtime_c00166_6_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00166_6_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00166_6_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00166_6_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00166_6_result,trial_of_nutrients_lagtime_c00166_6_result_2).
has_representation(trial_of_nutrients_lagtime_c00166_6_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00166_6_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00166_6_result_2,trial_of_nutrients_lagtime_c00166_6_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00166_6_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00166_6_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00166_6_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00166_7,trial_of_nutrients_lagtime_c00166_7_design).
design(trial_of_nutrients_lagtime_c00166_7_design).
has_proposition(trial_of_nutrients_lagtime_c00166_7_design,trial_of_nutrients_lagtime_c00166_7_factor).
factor(trial_of_nutrients_lagtime_c00166_7_factor).
has_representation(trial_of_nutrients_lagtime_c00166_7_factor,'presence or absence of c00166').
has_input(trial_of_nutrients_lagtime_c00166_7,trial_of_nutrients_lagtime_c00166_7_data).
data(trial_of_nutrients_lagtime_c00166_7_data).
has_part(trial_of_nutrients_lagtime_c00166_7_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00166_7_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00166_7_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00166_7,'nature-loop3_expt005-plate001').
plate('nature-loop3_expt005-plate001').
has_proposition(trial_of_nutrients_lagtime_c00166_7,trial_of_nutrients_lagtime_c00166_7_result).
result(trial_of_nutrients_lagtime_c00166_7_result).
has_part(trial_of_nutrients_lagtime_c00166_7_result,trial_of_nutrients_lagtime_c00166_7_result_1).
has_representation(trial_of_nutrients_lagtime_c00166_7_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00166_7_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00166_7_result_1,trial_of_nutrients_lagtime_c00166_7_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00166_7_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00166_7_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00166_7_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00166_7_result,trial_of_nutrients_lagtime_c00166_7_result_2).
has_representation(trial_of_nutrients_lagtime_c00166_7_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00166_7_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00166_7_result_2,trial_of_nutrients_lagtime_c00166_7_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00166_7_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00166_7_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00166_7_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00166_8,trial_of_nutrients_lagtime_c00166_8_design).
design(trial_of_nutrients_lagtime_c00166_8_design).
has_proposition(trial_of_nutrients_lagtime_c00166_8_design,trial_of_nutrients_lagtime_c00166_8_factor).
factor(trial_of_nutrients_lagtime_c00166_8_factor).
has_representation(trial_of_nutrients_lagtime_c00166_8_factor,'presence or absence of c00166').
has_input(trial_of_nutrients_lagtime_c00166_8,trial_of_nutrients_lagtime_c00166_8_data).
data(trial_of_nutrients_lagtime_c00166_8_data).
has_part(trial_of_nutrients_lagtime_c00166_8_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00166_8_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00166_8_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00166_8,'nature-loop2_expt001-plate002').
plate('nature-loop2_expt001-plate002').
has_proposition(trial_of_nutrients_lagtime_c00166_8,trial_of_nutrients_lagtime_c00166_8_result).
result(trial_of_nutrients_lagtime_c00166_8_result).
has_part(trial_of_nutrients_lagtime_c00166_8_result,trial_of_nutrients_lagtime_c00166_8_result_1).
has_representation(trial_of_nutrients_lagtime_c00166_8_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00166_8_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00166_8_result_1,trial_of_nutrients_lagtime_c00166_8_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00166_8_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00166_8_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00166_8_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00166_8_result,trial_of_nutrients_lagtime_c00166_8_result_2).
has_representation(trial_of_nutrients_lagtime_c00166_8_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00166_8_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00166_8_result_2,trial_of_nutrients_lagtime_c00166_8_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00166_8_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00166_8_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00166_8_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00166_9,trial_of_nutrients_lagtime_c00166_9_design).
design(trial_of_nutrients_lagtime_c00166_9_design).
has_proposition(trial_of_nutrients_lagtime_c00166_9_design,trial_of_nutrients_lagtime_c00166_9_factor).
factor(trial_of_nutrients_lagtime_c00166_9_factor).
has_representation(trial_of_nutrients_lagtime_c00166_9_factor,'presence or absence of c00166').
has_input(trial_of_nutrients_lagtime_c00166_9,trial_of_nutrients_lagtime_c00166_9_data).
data(trial_of_nutrients_lagtime_c00166_9_data).
has_part(trial_of_nutrients_lagtime_c00166_9_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00166_9_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00166_9_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00166_9,'nature-loop2_expt001-plate007').
plate('nature-loop2_expt001-plate007').
has_proposition(trial_of_nutrients_lagtime_c00166_9,trial_of_nutrients_lagtime_c00166_9_result).
result(trial_of_nutrients_lagtime_c00166_9_result).
has_part(trial_of_nutrients_lagtime_c00166_9_result,trial_of_nutrients_lagtime_c00166_9_result_1).
has_representation(trial_of_nutrients_lagtime_c00166_9_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00166_9_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00166_9_result_1,trial_of_nutrients_lagtime_c00166_9_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00166_9_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00166_9_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00166_9_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00166_9_result,trial_of_nutrients_lagtime_c00166_9_result_2).
has_representation(trial_of_nutrients_lagtime_c00166_9_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00166_9_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00166_9_result_2,trial_of_nutrients_lagtime_c00166_9_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00166_9_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00166_9_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00166_9_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00166_10,trial_of_nutrients_lagtime_c00166_10_design).
design(trial_of_nutrients_lagtime_c00166_10_design).
has_proposition(trial_of_nutrients_lagtime_c00166_10_design,trial_of_nutrients_lagtime_c00166_10_factor).
factor(trial_of_nutrients_lagtime_c00166_10_factor).
has_representation(trial_of_nutrients_lagtime_c00166_10_factor,'presence or absence of c00166').
has_input(trial_of_nutrients_lagtime_c00166_10,trial_of_nutrients_lagtime_c00166_10_data).
data(trial_of_nutrients_lagtime_c00166_10_data).
has_part(trial_of_nutrients_lagtime_c00166_10_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00166_10_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00166_10_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00166_10,'nature-loop3_expt006-plate007').
plate('nature-loop3_expt006-plate007').
has_proposition(trial_of_nutrients_lagtime_c00166_10,trial_of_nutrients_lagtime_c00166_10_result).
result(trial_of_nutrients_lagtime_c00166_10_result).
has_part(trial_of_nutrients_lagtime_c00166_10_result,trial_of_nutrients_lagtime_c00166_10_result_1).
has_representation(trial_of_nutrients_lagtime_c00166_10_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00166_10_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00166_10_result_1,trial_of_nutrients_lagtime_c00166_10_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00166_10_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00166_10_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00166_10_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00166_10_result,trial_of_nutrients_lagtime_c00166_10_result_2).
has_representation(trial_of_nutrients_lagtime_c00166_10_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00166_10_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00166_10_result_2,trial_of_nutrients_lagtime_c00166_10_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00166_10_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00166_10_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00166_10_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00166,trial_of_nutrients_lagtime_c00166_results).
result(trial_of_nutrients_lagtime_c00166_results).
has_part(trial_of_nutrients_lagtime_c00166_results,trial_of_nutrients_lagtime_c00166_results_1).
has_representation(trial_of_nutrients_lagtime_c00166_results_1,'median of wildtype medians in minimal').
text_representation('median of wildtype medians in minimal').
has_proposition(trial_of_nutrients_lagtime_c00166_results_1,trial_of_nutrients_lagtime_c00166_results_1_proc).
procedure(trial_of_nutrients_lagtime_c00166_results_1_proc).
has_proposition(trial_of_nutrients_lagtime_c00166_results_1_proc,'procedures/remove_dupl_medians_nut.R').
link('procedures/remove_dupl_medians_nut.R').
has_part(trial_of_nutrients_lagtime_c00166_results,trial_of_nutrients_lagtime_c00166_results_2).
has_representation(trial_of_nutrients_lagtime_c00166_results_2,'median of wildtype medians in minimal with metabolite').
text_representation('median of wildtype medians in minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00166_results_2,trial_of_nutrients_lagtime_c00166_results_2_proc).
procedure(trial_of_nutrients_lagtime_c00166_results_2_proc).
has_proposition(trial_of_nutrients_lagtime_c00166_results_2_proc,'procedures/remove_dupl_medians_nut.R').
link('procedures/remove_dupl_medians_nut.R').
has_part(trial_of_nutrients_lagtime_c00166_results,trial_of_nutrients_lagtime_c00166_results_3).
has_representation(trial_of_nutrients_lagtime_c00166_results_3,'difference between trial_of_nutrients_lagtime_c00166_results_1 and trial_of_nutrients_lagtime_c00166_results_2').
text_representation('difference between trial_of_nutrients_lagtime_c00166_results_1 and trial_of_nutrients_lagtime_c00166_results_2').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_result).
result(study_on_rich_growthrate_result).
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_1).
has_representation(study_on_rich_growthrate_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_rich_growthrate_result_1,'results/wr_kr_growth_rate.csv').
link('results/wr_kr_growth_rate.csv').
has_proposition(study_on_rich_growthrate_result_1,study_on_rich_growthrate_result_1_proc).
procedure(study_on_rich_growthrate_result_1_proc).
has_proposition(study_on_rich_growthrate_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_2).
has_representation(study_on_rich_growthrate_result_2,'bar graph (histogram) plotting study_on_rich_growthrate_result_1').
text_representation('bar graph (histogram) plotting study_on_rich_growthrate_result_1').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate1.tiff').
link('results/kr_wr_growth_rate1.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate2.tiff').
link('results/kr_wr_growth_rate2.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/overlayed_growth_rate.tiff').
link('results/overlayed_growth_rate.tiff').
has_proposition(study_on_rich_growthrate_result_2,study_on_rich_growthrate_result_2_proc).
procedure(study_on_rich_growthrate_result_2_proc).
has_proposition(study_on_rich_growthrate_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_conclusion).
conclusion(study_on_rich_growthrate_conclusion).
has_representation(study_on_rich_growthrate_conclusion,'The knockouts have higher growth rate in rich than the wild type').
text_representation('The knockouts have higher growth rate in rich than the wild type').
has_proposition(study_on_rich_growthrate_conclusion,'obtain statistical mode of study_on_rich_growthrate_result_1').
procedure('obtain statistical mode of study_on_rich_growthrate_result_1').
text_representation('obtain statistical mode of study_on_rich_growthrate_result_1').
has_part(study_of_nutrients_lagtime,trial_of_nutrients_lagtime_c00307).
trial(trial_of_nutrients_lagtime_c00307).
has_agent(trial_of_nutrients_lagtime_c00307,c00307).
metabolite(c00307).
has_proposition(trial_of_nutrients_lagtime_c00307_1,trial_of_nutrients_lagtime_c00307_1_design).
design(trial_of_nutrients_lagtime_c00307_1_design).
has_proposition(trial_of_nutrients_lagtime_c00307_1_design,trial_of_nutrients_lagtime_c00307_1_factor).
factor(trial_of_nutrients_lagtime_c00307_1_factor).
has_representation(trial_of_nutrients_lagtime_c00307_1_factor,'presence or absence of c00307').
has_input(trial_of_nutrients_lagtime_c00307_1,trial_of_nutrients_lagtime_c00307_1_data).
data(trial_of_nutrients_lagtime_c00307_1_data).
has_part(trial_of_nutrients_lagtime_c00307_1_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00307_1_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00307_1_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00307_1,'mar07-trial8_expt001-plate004').
plate('mar07-trial8_expt001-plate004').
has_proposition(trial_of_nutrients_lagtime_c00307_1,trial_of_nutrients_lagtime_c00307_1_result).
result(trial_of_nutrients_lagtime_c00307_1_result).
has_part(trial_of_nutrients_lagtime_c00307_1_result,trial_of_nutrients_lagtime_c00307_1_result_1).
has_representation(trial_of_nutrients_lagtime_c00307_1_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00307_1_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00307_1_result_1,trial_of_nutrients_lagtime_c00307_1_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00307_1_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00307_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00307_1_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00307_1_result,trial_of_nutrients_lagtime_c00307_1_result_2).
has_representation(trial_of_nutrients_lagtime_c00307_1_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00307_1_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00307_1_result_2,trial_of_nutrients_lagtime_c00307_1_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00307_1_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00307_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00307_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00307,trial_of_nutrients_lagtime_c00307_results).
result(trial_of_nutrients_lagtime_c00307_results).
has_part(trial_of_nutrients_lagtime_c00307_results,trial_of_nutrients_lagtime_c00307_results_1).
has_representation(trial_of_nutrients_lagtime_c00307_results_1,'median of wildtype medians in minimal').
text_representation('median of wildtype medians in minimal').
has_proposition(trial_of_nutrients_lagtime_c00307_results_1,trial_of_nutrients_lagtime_c00307_results_1_proc).
procedure(trial_of_nutrients_lagtime_c00307_results_1_proc).
has_proposition(trial_of_nutrients_lagtime_c00307_results_1_proc,'procedures/remove_dupl_medians_nut.R').
link('procedures/remove_dupl_medians_nut.R').
has_part(trial_of_nutrients_lagtime_c00307_results,trial_of_nutrients_lagtime_c00307_results_2).
has_representation(trial_of_nutrients_lagtime_c00307_results_2,'median of wildtype medians in minimal with metabolite').
text_representation('median of wildtype medians in minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00307_results_2,trial_of_nutrients_lagtime_c00307_results_2_proc).
procedure(trial_of_nutrients_lagtime_c00307_results_2_proc).
has_proposition(trial_of_nutrients_lagtime_c00307_results_2_proc,'procedures/remove_dupl_medians_nut.R').
link('procedures/remove_dupl_medians_nut.R').
has_part(trial_of_nutrients_lagtime_c00307_results,trial_of_nutrients_lagtime_c00307_results_3).
has_representation(trial_of_nutrients_lagtime_c00307_results_3,'difference between trial_of_nutrients_lagtime_c00307_results_1 and trial_of_nutrients_lagtime_c00307_results_2').
text_representation('difference between trial_of_nutrients_lagtime_c00307_results_1 and trial_of_nutrients_lagtime_c00307_results_2').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_result).
result(study_on_rich_growthrate_result).
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_1).
has_representation(study_on_rich_growthrate_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_rich_growthrate_result_1,'results/wr_kr_growth_rate.csv').
link('results/wr_kr_growth_rate.csv').
has_proposition(study_on_rich_growthrate_result_1,study_on_rich_growthrate_result_1_proc).
procedure(study_on_rich_growthrate_result_1_proc).
has_proposition(study_on_rich_growthrate_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_2).
has_representation(study_on_rich_growthrate_result_2,'bar graph (histogram) plotting study_on_rich_growthrate_result_1').
text_representation('bar graph (histogram) plotting study_on_rich_growthrate_result_1').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate1.tiff').
link('results/kr_wr_growth_rate1.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate2.tiff').
link('results/kr_wr_growth_rate2.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/overlayed_growth_rate.tiff').
link('results/overlayed_growth_rate.tiff').
has_proposition(study_on_rich_growthrate_result_2,study_on_rich_growthrate_result_2_proc).
procedure(study_on_rich_growthrate_result_2_proc).
has_proposition(study_on_rich_growthrate_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_conclusion).
conclusion(study_on_rich_growthrate_conclusion).
has_representation(study_on_rich_growthrate_conclusion,'The knockouts have higher growth rate in rich than the wild type').
text_representation('The knockouts have higher growth rate in rich than the wild type').
has_proposition(study_on_rich_growthrate_conclusion,'obtain statistical mode of study_on_rich_growthrate_result_1').
procedure('obtain statistical mode of study_on_rich_growthrate_result_1').
text_representation('obtain statistical mode of study_on_rich_growthrate_result_1').
has_part(study_of_nutrients_lagtime,trial_of_nutrients_lagtime_c00047).
trial(trial_of_nutrients_lagtime_c00047).
has_agent(trial_of_nutrients_lagtime_c00047,c00047).
metabolite(c00047).
has_proposition(trial_of_nutrients_lagtime_c00047_1,trial_of_nutrients_lagtime_c00047_1_design).
design(trial_of_nutrients_lagtime_c00047_1_design).
has_proposition(trial_of_nutrients_lagtime_c00047_1_design,trial_of_nutrients_lagtime_c00047_1_factor).
factor(trial_of_nutrients_lagtime_c00047_1_factor).
has_representation(trial_of_nutrients_lagtime_c00047_1_factor,'presence or absence of c00047').
has_input(trial_of_nutrients_lagtime_c00047_1,trial_of_nutrients_lagtime_c00047_1_data).
data(trial_of_nutrients_lagtime_c00047_1_data).
has_part(trial_of_nutrients_lagtime_c00047_1_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00047_1_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00047_1_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00047_1,'jan07-lysd1_expt001-plate003').
plate('jan07-lysd1_expt001-plate003').
has_proposition(trial_of_nutrients_lagtime_c00047_1,trial_of_nutrients_lagtime_c00047_1_result).
result(trial_of_nutrients_lagtime_c00047_1_result).
has_part(trial_of_nutrients_lagtime_c00047_1_result,trial_of_nutrients_lagtime_c00047_1_result_1).
has_representation(trial_of_nutrients_lagtime_c00047_1_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00047_1_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00047_1_result_1,trial_of_nutrients_lagtime_c00047_1_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00047_1_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00047_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00047_1_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00047_1_result,trial_of_nutrients_lagtime_c00047_1_result_2).
has_representation(trial_of_nutrients_lagtime_c00047_1_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00047_1_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00047_1_result_2,trial_of_nutrients_lagtime_c00047_1_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00047_1_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00047_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00047_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00047_2,trial_of_nutrients_lagtime_c00047_2_design).
design(trial_of_nutrients_lagtime_c00047_2_design).
has_proposition(trial_of_nutrients_lagtime_c00047_2_design,trial_of_nutrients_lagtime_c00047_2_factor).
factor(trial_of_nutrients_lagtime_c00047_2_factor).
has_representation(trial_of_nutrients_lagtime_c00047_2_factor,'presence or absence of c00047').
has_input(trial_of_nutrients_lagtime_c00047_2,trial_of_nutrients_lagtime_c00047_2_data).
data(trial_of_nutrients_lagtime_c00047_2_data).
has_part(trial_of_nutrients_lagtime_c00047_2_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00047_2_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00047_2_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00047_2,'jan07-lysd1_expt001-plate006').
plate('jan07-lysd1_expt001-plate006').
has_proposition(trial_of_nutrients_lagtime_c00047_2,trial_of_nutrients_lagtime_c00047_2_result).
result(trial_of_nutrients_lagtime_c00047_2_result).
has_part(trial_of_nutrients_lagtime_c00047_2_result,trial_of_nutrients_lagtime_c00047_2_result_1).
has_representation(trial_of_nutrients_lagtime_c00047_2_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00047_2_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00047_2_result_1,trial_of_nutrients_lagtime_c00047_2_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00047_2_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00047_2_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00047_2_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00047_2_result,trial_of_nutrients_lagtime_c00047_2_result_2).
has_representation(trial_of_nutrients_lagtime_c00047_2_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00047_2_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00047_2_result_2,trial_of_nutrients_lagtime_c00047_2_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00047_2_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00047_2_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00047_2_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00047_3,trial_of_nutrients_lagtime_c00047_3_design).
design(trial_of_nutrients_lagtime_c00047_3_design).
has_proposition(trial_of_nutrients_lagtime_c00047_3_design,trial_of_nutrients_lagtime_c00047_3_factor).
factor(trial_of_nutrients_lagtime_c00047_3_factor).
has_representation(trial_of_nutrients_lagtime_c00047_3_factor,'presence or absence of c00047').
has_input(trial_of_nutrients_lagtime_c00047_3,trial_of_nutrients_lagtime_c00047_3_data).
data(trial_of_nutrients_lagtime_c00047_3_data).
has_part(trial_of_nutrients_lagtime_c00047_3_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00047_3_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00047_3_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00047_3,'jan07-lyss1_expt001-plate003').
plate('jan07-lyss1_expt001-plate003').
has_proposition(trial_of_nutrients_lagtime_c00047_3,trial_of_nutrients_lagtime_c00047_3_result).
result(trial_of_nutrients_lagtime_c00047_3_result).
has_part(trial_of_nutrients_lagtime_c00047_3_result,trial_of_nutrients_lagtime_c00047_3_result_1).
has_representation(trial_of_nutrients_lagtime_c00047_3_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00047_3_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00047_3_result_1,trial_of_nutrients_lagtime_c00047_3_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00047_3_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00047_3_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00047_3_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00047_3_result,trial_of_nutrients_lagtime_c00047_3_result_2).
has_representation(trial_of_nutrients_lagtime_c00047_3_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00047_3_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00047_3_result_2,trial_of_nutrients_lagtime_c00047_3_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00047_3_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00047_3_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00047_3_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00047_4,trial_of_nutrients_lagtime_c00047_4_design).
design(trial_of_nutrients_lagtime_c00047_4_design).
has_proposition(trial_of_nutrients_lagtime_c00047_4_design,trial_of_nutrients_lagtime_c00047_4_factor).
factor(trial_of_nutrients_lagtime_c00047_4_factor).
has_representation(trial_of_nutrients_lagtime_c00047_4_factor,'presence or absence of c00047').
has_input(trial_of_nutrients_lagtime_c00047_4,trial_of_nutrients_lagtime_c00047_4_data).
data(trial_of_nutrients_lagtime_c00047_4_data).
has_part(trial_of_nutrients_lagtime_c00047_4_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00047_4_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00047_4_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00047_4,'jan07-lyss1_expt001-plate006').
plate('jan07-lyss1_expt001-plate006').
has_proposition(trial_of_nutrients_lagtime_c00047_4,trial_of_nutrients_lagtime_c00047_4_result).
result(trial_of_nutrients_lagtime_c00047_4_result).
has_part(trial_of_nutrients_lagtime_c00047_4_result,trial_of_nutrients_lagtime_c00047_4_result_1).
has_representation(trial_of_nutrients_lagtime_c00047_4_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00047_4_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00047_4_result_1,trial_of_nutrients_lagtime_c00047_4_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00047_4_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00047_4_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00047_4_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00047_4_result,trial_of_nutrients_lagtime_c00047_4_result_2).
has_representation(trial_of_nutrients_lagtime_c00047_4_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00047_4_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00047_4_result_2,trial_of_nutrients_lagtime_c00047_4_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00047_4_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00047_4_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00047_4_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00047_5,trial_of_nutrients_lagtime_c00047_5_design).
design(trial_of_nutrients_lagtime_c00047_5_design).
has_proposition(trial_of_nutrients_lagtime_c00047_5_design,trial_of_nutrients_lagtime_c00047_5_factor).
factor(trial_of_nutrients_lagtime_c00047_5_factor).
has_representation(trial_of_nutrients_lagtime_c00047_5_factor,'presence or absence of c00047').
has_input(trial_of_nutrients_lagtime_c00047_5,trial_of_nutrients_lagtime_c00047_5_data).
data(trial_of_nutrients_lagtime_c00047_5_data).
has_part(trial_of_nutrients_lagtime_c00047_5_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00047_5_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00047_5_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00047_5,'jan07-lyss1_expt001-plate009').
plate('jan07-lyss1_expt001-plate009').
has_proposition(trial_of_nutrients_lagtime_c00047_5,trial_of_nutrients_lagtime_c00047_5_result).
result(trial_of_nutrients_lagtime_c00047_5_result).
has_part(trial_of_nutrients_lagtime_c00047_5_result,trial_of_nutrients_lagtime_c00047_5_result_1).
has_representation(trial_of_nutrients_lagtime_c00047_5_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00047_5_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00047_5_result_1,trial_of_nutrients_lagtime_c00047_5_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00047_5_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00047_5_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00047_5_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00047_5_result,trial_of_nutrients_lagtime_c00047_5_result_2).
has_representation(trial_of_nutrients_lagtime_c00047_5_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00047_5_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00047_5_result_2,trial_of_nutrients_lagtime_c00047_5_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00047_5_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00047_5_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00047_5_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00047_6,trial_of_nutrients_lagtime_c00047_6_design).
design(trial_of_nutrients_lagtime_c00047_6_design).
has_proposition(trial_of_nutrients_lagtime_c00047_6_design,trial_of_nutrients_lagtime_c00047_6_factor).
factor(trial_of_nutrients_lagtime_c00047_6_factor).
has_representation(trial_of_nutrients_lagtime_c00047_6_factor,'presence or absence of c00047').
has_input(trial_of_nutrients_lagtime_c00047_6,trial_of_nutrients_lagtime_c00047_6_data).
data(trial_of_nutrients_lagtime_c00047_6_data).
has_part(trial_of_nutrients_lagtime_c00047_6_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00047_6_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00047_6_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00047_6,'trial-130407_expt001-plate001').
plate('trial-130407_expt001-plate001').
has_proposition(trial_of_nutrients_lagtime_c00047_6,trial_of_nutrients_lagtime_c00047_6_result).
result(trial_of_nutrients_lagtime_c00047_6_result).
has_part(trial_of_nutrients_lagtime_c00047_6_result,trial_of_nutrients_lagtime_c00047_6_result_1).
has_representation(trial_of_nutrients_lagtime_c00047_6_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00047_6_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00047_6_result_1,trial_of_nutrients_lagtime_c00047_6_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00047_6_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00047_6_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00047_6_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00047_6_result,trial_of_nutrients_lagtime_c00047_6_result_2).
has_representation(trial_of_nutrients_lagtime_c00047_6_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00047_6_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00047_6_result_2,trial_of_nutrients_lagtime_c00047_6_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00047_6_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00047_6_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00047_6_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00047_7,trial_of_nutrients_lagtime_c00047_7_design).
design(trial_of_nutrients_lagtime_c00047_7_design).
has_proposition(trial_of_nutrients_lagtime_c00047_7_design,trial_of_nutrients_lagtime_c00047_7_factor).
factor(trial_of_nutrients_lagtime_c00047_7_factor).
has_representation(trial_of_nutrients_lagtime_c00047_7_factor,'presence or absence of c00047').
has_input(trial_of_nutrients_lagtime_c00047_7,trial_of_nutrients_lagtime_c00047_7_data).
data(trial_of_nutrients_lagtime_c00047_7_data).
has_part(trial_of_nutrients_lagtime_c00047_7_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00047_7_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00047_7_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00047_7,'trial-130407_expt001-plate004').
plate('trial-130407_expt001-plate004').
has_proposition(trial_of_nutrients_lagtime_c00047_7,trial_of_nutrients_lagtime_c00047_7_result).
result(trial_of_nutrients_lagtime_c00047_7_result).
has_part(trial_of_nutrients_lagtime_c00047_7_result,trial_of_nutrients_lagtime_c00047_7_result_1).
has_representation(trial_of_nutrients_lagtime_c00047_7_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00047_7_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00047_7_result_1,trial_of_nutrients_lagtime_c00047_7_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00047_7_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00047_7_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00047_7_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00047_7_result,trial_of_nutrients_lagtime_c00047_7_result_2).
has_representation(trial_of_nutrients_lagtime_c00047_7_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00047_7_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00047_7_result_2,trial_of_nutrients_lagtime_c00047_7_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00047_7_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00047_7_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00047_7_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00047,trial_of_nutrients_lagtime_c00047_results).
result(trial_of_nutrients_lagtime_c00047_results).
has_part(trial_of_nutrients_lagtime_c00047_results,trial_of_nutrients_lagtime_c00047_results_1).
has_representation(trial_of_nutrients_lagtime_c00047_results_1,'median of wildtype medians in minimal').
text_representation('median of wildtype medians in minimal').
has_proposition(trial_of_nutrients_lagtime_c00047_results_1,trial_of_nutrients_lagtime_c00047_results_1_proc).
procedure(trial_of_nutrients_lagtime_c00047_results_1_proc).
has_proposition(trial_of_nutrients_lagtime_c00047_results_1_proc,'procedures/remove_dupl_medians_nut.R').
link('procedures/remove_dupl_medians_nut.R').
has_part(trial_of_nutrients_lagtime_c00047_results,trial_of_nutrients_lagtime_c00047_results_2).
has_representation(trial_of_nutrients_lagtime_c00047_results_2,'median of wildtype medians in minimal with metabolite').
text_representation('median of wildtype medians in minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00047_results_2,trial_of_nutrients_lagtime_c00047_results_2_proc).
procedure(trial_of_nutrients_lagtime_c00047_results_2_proc).
has_proposition(trial_of_nutrients_lagtime_c00047_results_2_proc,'procedures/remove_dupl_medians_nut.R').
link('procedures/remove_dupl_medians_nut.R').
has_part(trial_of_nutrients_lagtime_c00047_results,trial_of_nutrients_lagtime_c00047_results_3).
has_representation(trial_of_nutrients_lagtime_c00047_results_3,'difference between trial_of_nutrients_lagtime_c00047_results_1 and trial_of_nutrients_lagtime_c00047_results_2').
text_representation('difference between trial_of_nutrients_lagtime_c00047_results_1 and trial_of_nutrients_lagtime_c00047_results_2').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_result).
result(study_on_rich_growthrate_result).
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_1).
has_representation(study_on_rich_growthrate_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_rich_growthrate_result_1,'results/wr_kr_growth_rate.csv').
link('results/wr_kr_growth_rate.csv').
has_proposition(study_on_rich_growthrate_result_1,study_on_rich_growthrate_result_1_proc).
procedure(study_on_rich_growthrate_result_1_proc).
has_proposition(study_on_rich_growthrate_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_2).
has_representation(study_on_rich_growthrate_result_2,'bar graph (histogram) plotting study_on_rich_growthrate_result_1').
text_representation('bar graph (histogram) plotting study_on_rich_growthrate_result_1').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate1.tiff').
link('results/kr_wr_growth_rate1.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate2.tiff').
link('results/kr_wr_growth_rate2.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/overlayed_growth_rate.tiff').
link('results/overlayed_growth_rate.tiff').
has_proposition(study_on_rich_growthrate_result_2,study_on_rich_growthrate_result_2_proc).
procedure(study_on_rich_growthrate_result_2_proc).
has_proposition(study_on_rich_growthrate_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_conclusion).
conclusion(study_on_rich_growthrate_conclusion).
has_representation(study_on_rich_growthrate_conclusion,'The knockouts have higher growth rate in rich than the wild type').
text_representation('The knockouts have higher growth rate in rich than the wild type').
has_proposition(study_on_rich_growthrate_conclusion,'obtain statistical mode of study_on_rich_growthrate_result_1').
procedure('obtain statistical mode of study_on_rich_growthrate_result_1').
text_representation('obtain statistical mode of study_on_rich_growthrate_result_1').
has_part(study_of_nutrients_lagtime,trial_of_nutrients_lagtime_c00463).
trial(trial_of_nutrients_lagtime_c00463).
has_agent(trial_of_nutrients_lagtime_c00463,c00463).
metabolite(c00463).
has_proposition(trial_of_nutrients_lagtime_c00463_1,trial_of_nutrients_lagtime_c00463_1_design).
design(trial_of_nutrients_lagtime_c00463_1_design).
has_proposition(trial_of_nutrients_lagtime_c00463_1_design,trial_of_nutrients_lagtime_c00463_1_factor).
factor(trial_of_nutrients_lagtime_c00463_1_factor).
has_representation(trial_of_nutrients_lagtime_c00463_1_factor,'presence or absence of c00463').
has_input(trial_of_nutrients_lagtime_c00463_1,trial_of_nutrients_lagtime_c00463_1_data).
data(trial_of_nutrients_lagtime_c00463_1_data).
has_part(trial_of_nutrients_lagtime_c00463_1_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00463_1_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00463_1_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00463_1,'nature-loop3_expt003-plate002').
plate('nature-loop3_expt003-plate002').
has_proposition(trial_of_nutrients_lagtime_c00463_1,trial_of_nutrients_lagtime_c00463_1_result).
result(trial_of_nutrients_lagtime_c00463_1_result).
has_part(trial_of_nutrients_lagtime_c00463_1_result,trial_of_nutrients_lagtime_c00463_1_result_1).
has_representation(trial_of_nutrients_lagtime_c00463_1_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00463_1_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00463_1_result_1,trial_of_nutrients_lagtime_c00463_1_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00463_1_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00463_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00463_1_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00463_1_result,trial_of_nutrients_lagtime_c00463_1_result_2).
has_representation(trial_of_nutrients_lagtime_c00463_1_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00463_1_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00463_1_result_2,trial_of_nutrients_lagtime_c00463_1_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00463_1_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00463_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00463_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00463_2,trial_of_nutrients_lagtime_c00463_2_design).
design(trial_of_nutrients_lagtime_c00463_2_design).
has_proposition(trial_of_nutrients_lagtime_c00463_2_design,trial_of_nutrients_lagtime_c00463_2_factor).
factor(trial_of_nutrients_lagtime_c00463_2_factor).
has_representation(trial_of_nutrients_lagtime_c00463_2_factor,'presence or absence of c00463').
has_input(trial_of_nutrients_lagtime_c00463_2,trial_of_nutrients_lagtime_c00463_2_data).
data(trial_of_nutrients_lagtime_c00463_2_data).
has_part(trial_of_nutrients_lagtime_c00463_2_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00463_2_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00463_2_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00463_2,'nature-loop3_expt003-plate003').
plate('nature-loop3_expt003-plate003').
has_proposition(trial_of_nutrients_lagtime_c00463_2,trial_of_nutrients_lagtime_c00463_2_result).
result(trial_of_nutrients_lagtime_c00463_2_result).
has_part(trial_of_nutrients_lagtime_c00463_2_result,trial_of_nutrients_lagtime_c00463_2_result_1).
has_representation(trial_of_nutrients_lagtime_c00463_2_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00463_2_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00463_2_result_1,trial_of_nutrients_lagtime_c00463_2_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00463_2_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00463_2_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00463_2_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00463_2_result,trial_of_nutrients_lagtime_c00463_2_result_2).
has_representation(trial_of_nutrients_lagtime_c00463_2_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00463_2_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00463_2_result_2,trial_of_nutrients_lagtime_c00463_2_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00463_2_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00463_2_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00463_2_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00463_3,trial_of_nutrients_lagtime_c00463_3_design).
design(trial_of_nutrients_lagtime_c00463_3_design).
has_proposition(trial_of_nutrients_lagtime_c00463_3_design,trial_of_nutrients_lagtime_c00463_3_factor).
factor(trial_of_nutrients_lagtime_c00463_3_factor).
has_representation(trial_of_nutrients_lagtime_c00463_3_factor,'presence or absence of c00463').
has_input(trial_of_nutrients_lagtime_c00463_3,trial_of_nutrients_lagtime_c00463_3_data).
data(trial_of_nutrients_lagtime_c00463_3_data).
has_part(trial_of_nutrients_lagtime_c00463_3_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00463_3_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00463_3_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00463_3,'nature-loop3_expt003-plate004').
plate('nature-loop3_expt003-plate004').
has_proposition(trial_of_nutrients_lagtime_c00463_3,trial_of_nutrients_lagtime_c00463_3_result).
result(trial_of_nutrients_lagtime_c00463_3_result).
has_part(trial_of_nutrients_lagtime_c00463_3_result,trial_of_nutrients_lagtime_c00463_3_result_1).
has_representation(trial_of_nutrients_lagtime_c00463_3_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00463_3_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00463_3_result_1,trial_of_nutrients_lagtime_c00463_3_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00463_3_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00463_3_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00463_3_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00463_3_result,trial_of_nutrients_lagtime_c00463_3_result_2).
has_representation(trial_of_nutrients_lagtime_c00463_3_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00463_3_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00463_3_result_2,trial_of_nutrients_lagtime_c00463_3_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00463_3_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00463_3_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00463_3_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00463_4,trial_of_nutrients_lagtime_c00463_4_design).
design(trial_of_nutrients_lagtime_c00463_4_design).
has_proposition(trial_of_nutrients_lagtime_c00463_4_design,trial_of_nutrients_lagtime_c00463_4_factor).
factor(trial_of_nutrients_lagtime_c00463_4_factor).
has_representation(trial_of_nutrients_lagtime_c00463_4_factor,'presence or absence of c00463').
has_input(trial_of_nutrients_lagtime_c00463_4,trial_of_nutrients_lagtime_c00463_4_data).
data(trial_of_nutrients_lagtime_c00463_4_data).
has_part(trial_of_nutrients_lagtime_c00463_4_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00463_4_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00463_4_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00463_4,'nature-loop3_expt003-plate005').
plate('nature-loop3_expt003-plate005').
has_proposition(trial_of_nutrients_lagtime_c00463_4,trial_of_nutrients_lagtime_c00463_4_result).
result(trial_of_nutrients_lagtime_c00463_4_result).
has_part(trial_of_nutrients_lagtime_c00463_4_result,trial_of_nutrients_lagtime_c00463_4_result_1).
has_representation(trial_of_nutrients_lagtime_c00463_4_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00463_4_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00463_4_result_1,trial_of_nutrients_lagtime_c00463_4_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00463_4_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00463_4_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00463_4_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00463_4_result,trial_of_nutrients_lagtime_c00463_4_result_2).
has_representation(trial_of_nutrients_lagtime_c00463_4_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00463_4_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00463_4_result_2,trial_of_nutrients_lagtime_c00463_4_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00463_4_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00463_4_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00463_4_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00463_5,trial_of_nutrients_lagtime_c00463_5_design).
design(trial_of_nutrients_lagtime_c00463_5_design).
has_proposition(trial_of_nutrients_lagtime_c00463_5_design,trial_of_nutrients_lagtime_c00463_5_factor).
factor(trial_of_nutrients_lagtime_c00463_5_factor).
has_representation(trial_of_nutrients_lagtime_c00463_5_factor,'presence or absence of c00463').
has_input(trial_of_nutrients_lagtime_c00463_5,trial_of_nutrients_lagtime_c00463_5_data).
data(trial_of_nutrients_lagtime_c00463_5_data).
has_part(trial_of_nutrients_lagtime_c00463_5_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00463_5_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00463_5_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00463_5,'nature-loop3_expt003-plate007').
plate('nature-loop3_expt003-plate007').
has_proposition(trial_of_nutrients_lagtime_c00463_5,trial_of_nutrients_lagtime_c00463_5_result).
result(trial_of_nutrients_lagtime_c00463_5_result).
has_part(trial_of_nutrients_lagtime_c00463_5_result,trial_of_nutrients_lagtime_c00463_5_result_1).
has_representation(trial_of_nutrients_lagtime_c00463_5_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00463_5_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00463_5_result_1,trial_of_nutrients_lagtime_c00463_5_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00463_5_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00463_5_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00463_5_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00463_5_result,trial_of_nutrients_lagtime_c00463_5_result_2).
has_representation(trial_of_nutrients_lagtime_c00463_5_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00463_5_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00463_5_result_2,trial_of_nutrients_lagtime_c00463_5_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00463_5_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00463_5_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00463_5_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00463,trial_of_nutrients_lagtime_c00463_results).
result(trial_of_nutrients_lagtime_c00463_results).
has_part(trial_of_nutrients_lagtime_c00463_results,trial_of_nutrients_lagtime_c00463_results_1).
has_representation(trial_of_nutrients_lagtime_c00463_results_1,'median of wildtype medians in minimal').
text_representation('median of wildtype medians in minimal').
has_proposition(trial_of_nutrients_lagtime_c00463_results_1,trial_of_nutrients_lagtime_c00463_results_1_proc).
procedure(trial_of_nutrients_lagtime_c00463_results_1_proc).
has_proposition(trial_of_nutrients_lagtime_c00463_results_1_proc,'procedures/remove_dupl_medians_nut.R').
link('procedures/remove_dupl_medians_nut.R').
has_part(trial_of_nutrients_lagtime_c00463_results,trial_of_nutrients_lagtime_c00463_results_2).
has_representation(trial_of_nutrients_lagtime_c00463_results_2,'median of wildtype medians in minimal with metabolite').
text_representation('median of wildtype medians in minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00463_results_2,trial_of_nutrients_lagtime_c00463_results_2_proc).
procedure(trial_of_nutrients_lagtime_c00463_results_2_proc).
has_proposition(trial_of_nutrients_lagtime_c00463_results_2_proc,'procedures/remove_dupl_medians_nut.R').
link('procedures/remove_dupl_medians_nut.R').
has_part(trial_of_nutrients_lagtime_c00463_results,trial_of_nutrients_lagtime_c00463_results_3).
has_representation(trial_of_nutrients_lagtime_c00463_results_3,'difference between trial_of_nutrients_lagtime_c00463_results_1 and trial_of_nutrients_lagtime_c00463_results_2').
text_representation('difference between trial_of_nutrients_lagtime_c00463_results_1 and trial_of_nutrients_lagtime_c00463_results_2').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_result).
result(study_on_rich_growthrate_result).
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_1).
has_representation(study_on_rich_growthrate_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_rich_growthrate_result_1,'results/wr_kr_growth_rate.csv').
link('results/wr_kr_growth_rate.csv').
has_proposition(study_on_rich_growthrate_result_1,study_on_rich_growthrate_result_1_proc).
procedure(study_on_rich_growthrate_result_1_proc).
has_proposition(study_on_rich_growthrate_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_2).
has_representation(study_on_rich_growthrate_result_2,'bar graph (histogram) plotting study_on_rich_growthrate_result_1').
text_representation('bar graph (histogram) plotting study_on_rich_growthrate_result_1').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate1.tiff').
link('results/kr_wr_growth_rate1.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate2.tiff').
link('results/kr_wr_growth_rate2.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/overlayed_growth_rate.tiff').
link('results/overlayed_growth_rate.tiff').
has_proposition(study_on_rich_growthrate_result_2,study_on_rich_growthrate_result_2_proc).
procedure(study_on_rich_growthrate_result_2_proc).
has_proposition(study_on_rich_growthrate_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_conclusion).
conclusion(study_on_rich_growthrate_conclusion).
has_representation(study_on_rich_growthrate_conclusion,'The knockouts have higher growth rate in rich than the wild type').
text_representation('The knockouts have higher growth rate in rich than the wild type').
has_proposition(study_on_rich_growthrate_conclusion,'obtain statistical mode of study_on_rich_growthrate_result_1').
procedure('obtain statistical mode of study_on_rich_growthrate_result_1').
text_representation('obtain statistical mode of study_on_rich_growthrate_result_1').
has_part(study_of_nutrients_lagtime,trial_of_nutrients_lagtime_c00188).
trial(trial_of_nutrients_lagtime_c00188).
has_agent(trial_of_nutrients_lagtime_c00188,c00188).
metabolite(c00188).
has_proposition(trial_of_nutrients_lagtime_c00188_1,trial_of_nutrients_lagtime_c00188_1_design).
design(trial_of_nutrients_lagtime_c00188_1_design).
has_proposition(trial_of_nutrients_lagtime_c00188_1_design,trial_of_nutrients_lagtime_c00188_1_factor).
factor(trial_of_nutrients_lagtime_c00188_1_factor).
has_representation(trial_of_nutrients_lagtime_c00188_1_factor,'presence or absence of c00188').
has_input(trial_of_nutrients_lagtime_c00188_1,trial_of_nutrients_lagtime_c00188_1_data).
data(trial_of_nutrients_lagtime_c00188_1_data).
has_part(trial_of_nutrients_lagtime_c00188_1_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00188_1_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00188_1_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00188_1,'jan07-single3_expt001-plate001').
plate('jan07-single3_expt001-plate001').
has_proposition(trial_of_nutrients_lagtime_c00188_1,trial_of_nutrients_lagtime_c00188_1_result).
result(trial_of_nutrients_lagtime_c00188_1_result).
has_part(trial_of_nutrients_lagtime_c00188_1_result,trial_of_nutrients_lagtime_c00188_1_result_1).
has_representation(trial_of_nutrients_lagtime_c00188_1_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00188_1_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00188_1_result_1,trial_of_nutrients_lagtime_c00188_1_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00188_1_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00188_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00188_1_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00188_1_result,trial_of_nutrients_lagtime_c00188_1_result_2).
has_representation(trial_of_nutrients_lagtime_c00188_1_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00188_1_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00188_1_result_2,trial_of_nutrients_lagtime_c00188_1_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00188_1_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00188_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00188_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00188_2,trial_of_nutrients_lagtime_c00188_2_design).
design(trial_of_nutrients_lagtime_c00188_2_design).
has_proposition(trial_of_nutrients_lagtime_c00188_2_design,trial_of_nutrients_lagtime_c00188_2_factor).
factor(trial_of_nutrients_lagtime_c00188_2_factor).
has_representation(trial_of_nutrients_lagtime_c00188_2_factor,'presence or absence of c00188').
has_input(trial_of_nutrients_lagtime_c00188_2,trial_of_nutrients_lagtime_c00188_2_data).
data(trial_of_nutrients_lagtime_c00188_2_data).
has_part(trial_of_nutrients_lagtime_c00188_2_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00188_2_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00188_2_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00188_2,'jan07-trial2_expt001-plate010').
plate('jan07-trial2_expt001-plate010').
has_proposition(trial_of_nutrients_lagtime_c00188_2,trial_of_nutrients_lagtime_c00188_2_result).
result(trial_of_nutrients_lagtime_c00188_2_result).
has_part(trial_of_nutrients_lagtime_c00188_2_result,trial_of_nutrients_lagtime_c00188_2_result_1).
has_representation(trial_of_nutrients_lagtime_c00188_2_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00188_2_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00188_2_result_1,trial_of_nutrients_lagtime_c00188_2_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00188_2_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00188_2_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00188_2_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00188_2_result,trial_of_nutrients_lagtime_c00188_2_result_2).
has_representation(trial_of_nutrients_lagtime_c00188_2_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00188_2_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00188_2_result_2,trial_of_nutrients_lagtime_c00188_2_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00188_2_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00188_2_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00188_2_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00188,trial_of_nutrients_lagtime_c00188_results).
result(trial_of_nutrients_lagtime_c00188_results).
has_part(trial_of_nutrients_lagtime_c00188_results,trial_of_nutrients_lagtime_c00188_results_1).
has_representation(trial_of_nutrients_lagtime_c00188_results_1,'median of wildtype medians in minimal').
text_representation('median of wildtype medians in minimal').
has_proposition(trial_of_nutrients_lagtime_c00188_results_1,trial_of_nutrients_lagtime_c00188_results_1_proc).
procedure(trial_of_nutrients_lagtime_c00188_results_1_proc).
has_proposition(trial_of_nutrients_lagtime_c00188_results_1_proc,'procedures/remove_dupl_medians_nut.R').
link('procedures/remove_dupl_medians_nut.R').
has_part(trial_of_nutrients_lagtime_c00188_results,trial_of_nutrients_lagtime_c00188_results_2).
has_representation(trial_of_nutrients_lagtime_c00188_results_2,'median of wildtype medians in minimal with metabolite').
text_representation('median of wildtype medians in minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00188_results_2,trial_of_nutrients_lagtime_c00188_results_2_proc).
procedure(trial_of_nutrients_lagtime_c00188_results_2_proc).
has_proposition(trial_of_nutrients_lagtime_c00188_results_2_proc,'procedures/remove_dupl_medians_nut.R').
link('procedures/remove_dupl_medians_nut.R').
has_part(trial_of_nutrients_lagtime_c00188_results,trial_of_nutrients_lagtime_c00188_results_3).
has_representation(trial_of_nutrients_lagtime_c00188_results_3,'difference between trial_of_nutrients_lagtime_c00188_results_1 and trial_of_nutrients_lagtime_c00188_results_2').
text_representation('difference between trial_of_nutrients_lagtime_c00188_results_1 and trial_of_nutrients_lagtime_c00188_results_2').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_result).
result(study_on_rich_growthrate_result).
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_1).
has_representation(study_on_rich_growthrate_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_rich_growthrate_result_1,'results/wr_kr_growth_rate.csv').
link('results/wr_kr_growth_rate.csv').
has_proposition(study_on_rich_growthrate_result_1,study_on_rich_growthrate_result_1_proc).
procedure(study_on_rich_growthrate_result_1_proc).
has_proposition(study_on_rich_growthrate_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_2).
has_representation(study_on_rich_growthrate_result_2,'bar graph (histogram) plotting study_on_rich_growthrate_result_1').
text_representation('bar graph (histogram) plotting study_on_rich_growthrate_result_1').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate1.tiff').
link('results/kr_wr_growth_rate1.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate2.tiff').
link('results/kr_wr_growth_rate2.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/overlayed_growth_rate.tiff').
link('results/overlayed_growth_rate.tiff').
has_proposition(study_on_rich_growthrate_result_2,study_on_rich_growthrate_result_2_proc).
procedure(study_on_rich_growthrate_result_2_proc).
has_proposition(study_on_rich_growthrate_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_conclusion).
conclusion(study_on_rich_growthrate_conclusion).
has_representation(study_on_rich_growthrate_conclusion,'The knockouts have higher growth rate in rich than the wild type').
text_representation('The knockouts have higher growth rate in rich than the wild type').
has_proposition(study_on_rich_growthrate_conclusion,'obtain statistical mode of study_on_rich_growthrate_result_1').
procedure('obtain statistical mode of study_on_rich_growthrate_result_1').
text_representation('obtain statistical mode of study_on_rich_growthrate_result_1').
has_part(study_of_nutrients_lagtime,trial_of_nutrients_lagtime_c00275).
trial(trial_of_nutrients_lagtime_c00275).
has_agent(trial_of_nutrients_lagtime_c00275,c00275).
metabolite(c00275).
has_proposition(trial_of_nutrients_lagtime_c00275_1,trial_of_nutrients_lagtime_c00275_1_design).
design(trial_of_nutrients_lagtime_c00275_1_design).
has_proposition(trial_of_nutrients_lagtime_c00275_1_design,trial_of_nutrients_lagtime_c00275_1_factor).
factor(trial_of_nutrients_lagtime_c00275_1_factor).
has_representation(trial_of_nutrients_lagtime_c00275_1_factor,'presence or absence of c00275').
has_input(trial_of_nutrients_lagtime_c00275_1,trial_of_nutrients_lagtime_c00275_1_data).
data(trial_of_nutrients_lagtime_c00275_1_data).
has_part(trial_of_nutrients_lagtime_c00275_1_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00275_1_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00275_1_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00275_1,'mar07-trial3_expt001-plate006').
plate('mar07-trial3_expt001-plate006').
has_proposition(trial_of_nutrients_lagtime_c00275_1,trial_of_nutrients_lagtime_c00275_1_result).
result(trial_of_nutrients_lagtime_c00275_1_result).
has_part(trial_of_nutrients_lagtime_c00275_1_result,trial_of_nutrients_lagtime_c00275_1_result_1).
has_representation(trial_of_nutrients_lagtime_c00275_1_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00275_1_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00275_1_result_1,trial_of_nutrients_lagtime_c00275_1_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00275_1_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00275_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00275_1_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00275_1_result,trial_of_nutrients_lagtime_c00275_1_result_2).
has_representation(trial_of_nutrients_lagtime_c00275_1_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00275_1_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00275_1_result_2,trial_of_nutrients_lagtime_c00275_1_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00275_1_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00275_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00275_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00275,trial_of_nutrients_lagtime_c00275_results).
result(trial_of_nutrients_lagtime_c00275_results).
has_part(trial_of_nutrients_lagtime_c00275_results,trial_of_nutrients_lagtime_c00275_results_1).
has_representation(trial_of_nutrients_lagtime_c00275_results_1,'median of wildtype medians in minimal').
text_representation('median of wildtype medians in minimal').
has_proposition(trial_of_nutrients_lagtime_c00275_results_1,trial_of_nutrients_lagtime_c00275_results_1_proc).
procedure(trial_of_nutrients_lagtime_c00275_results_1_proc).
has_proposition(trial_of_nutrients_lagtime_c00275_results_1_proc,'procedures/remove_dupl_medians_nut.R').
link('procedures/remove_dupl_medians_nut.R').
has_part(trial_of_nutrients_lagtime_c00275_results,trial_of_nutrients_lagtime_c00275_results_2).
has_representation(trial_of_nutrients_lagtime_c00275_results_2,'median of wildtype medians in minimal with metabolite').
text_representation('median of wildtype medians in minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00275_results_2,trial_of_nutrients_lagtime_c00275_results_2_proc).
procedure(trial_of_nutrients_lagtime_c00275_results_2_proc).
has_proposition(trial_of_nutrients_lagtime_c00275_results_2_proc,'procedures/remove_dupl_medians_nut.R').
link('procedures/remove_dupl_medians_nut.R').
has_part(trial_of_nutrients_lagtime_c00275_results,trial_of_nutrients_lagtime_c00275_results_3).
has_representation(trial_of_nutrients_lagtime_c00275_results_3,'difference between trial_of_nutrients_lagtime_c00275_results_1 and trial_of_nutrients_lagtime_c00275_results_2').
text_representation('difference between trial_of_nutrients_lagtime_c00275_results_1 and trial_of_nutrients_lagtime_c00275_results_2').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_result).
result(study_on_rich_growthrate_result).
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_1).
has_representation(study_on_rich_growthrate_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_rich_growthrate_result_1,'results/wr_kr_growth_rate.csv').
link('results/wr_kr_growth_rate.csv').
has_proposition(study_on_rich_growthrate_result_1,study_on_rich_growthrate_result_1_proc).
procedure(study_on_rich_growthrate_result_1_proc).
has_proposition(study_on_rich_growthrate_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_2).
has_representation(study_on_rich_growthrate_result_2,'bar graph (histogram) plotting study_on_rich_growthrate_result_1').
text_representation('bar graph (histogram) plotting study_on_rich_growthrate_result_1').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate1.tiff').
link('results/kr_wr_growth_rate1.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate2.tiff').
link('results/kr_wr_growth_rate2.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/overlayed_growth_rate.tiff').
link('results/overlayed_growth_rate.tiff').
has_proposition(study_on_rich_growthrate_result_2,study_on_rich_growthrate_result_2_proc).
procedure(study_on_rich_growthrate_result_2_proc).
has_proposition(study_on_rich_growthrate_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_conclusion).
conclusion(study_on_rich_growthrate_conclusion).
has_representation(study_on_rich_growthrate_conclusion,'The knockouts have higher growth rate in rich than the wild type').
text_representation('The knockouts have higher growth rate in rich than the wild type').
has_proposition(study_on_rich_growthrate_conclusion,'obtain statistical mode of study_on_rich_growthrate_result_1').
procedure('obtain statistical mode of study_on_rich_growthrate_result_1').
text_representation('obtain statistical mode of study_on_rich_growthrate_result_1').
has_part(study_of_nutrients_lagtime,trial_of_nutrients_lagtime_c00022).
trial(trial_of_nutrients_lagtime_c00022).
has_agent(trial_of_nutrients_lagtime_c00022,c00022).
metabolite(c00022).
has_proposition(trial_of_nutrients_lagtime_c00022_1,trial_of_nutrients_lagtime_c00022_1_design).
design(trial_of_nutrients_lagtime_c00022_1_design).
has_proposition(trial_of_nutrients_lagtime_c00022_1_design,trial_of_nutrients_lagtime_c00022_1_factor).
factor(trial_of_nutrients_lagtime_c00022_1_factor).
has_representation(trial_of_nutrients_lagtime_c00022_1_factor,'presence or absence of c00022').
has_input(trial_of_nutrients_lagtime_c00022_1,trial_of_nutrients_lagtime_c00022_1_data).
data(trial_of_nutrients_lagtime_c00022_1_data).
has_part(trial_of_nutrients_lagtime_c00022_1_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00022_1_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00022_1_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00022_1,'mar07-trial8_expt001-plate003').
plate('mar07-trial8_expt001-plate003').
has_proposition(trial_of_nutrients_lagtime_c00022_1,trial_of_nutrients_lagtime_c00022_1_result).
result(trial_of_nutrients_lagtime_c00022_1_result).
has_part(trial_of_nutrients_lagtime_c00022_1_result,trial_of_nutrients_lagtime_c00022_1_result_1).
has_representation(trial_of_nutrients_lagtime_c00022_1_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00022_1_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00022_1_result_1,trial_of_nutrients_lagtime_c00022_1_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00022_1_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00022_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00022_1_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00022_1_result,trial_of_nutrients_lagtime_c00022_1_result_2).
has_representation(trial_of_nutrients_lagtime_c00022_1_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00022_1_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00022_1_result_2,trial_of_nutrients_lagtime_c00022_1_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00022_1_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00022_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00022_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00022,trial_of_nutrients_lagtime_c00022_results).
result(trial_of_nutrients_lagtime_c00022_results).
has_part(trial_of_nutrients_lagtime_c00022_results,trial_of_nutrients_lagtime_c00022_results_1).
has_representation(trial_of_nutrients_lagtime_c00022_results_1,'median of wildtype medians in minimal').
text_representation('median of wildtype medians in minimal').
has_proposition(trial_of_nutrients_lagtime_c00022_results_1,trial_of_nutrients_lagtime_c00022_results_1_proc).
procedure(trial_of_nutrients_lagtime_c00022_results_1_proc).
has_proposition(trial_of_nutrients_lagtime_c00022_results_1_proc,'procedures/remove_dupl_medians_nut.R').
link('procedures/remove_dupl_medians_nut.R').
has_part(trial_of_nutrients_lagtime_c00022_results,trial_of_nutrients_lagtime_c00022_results_2).
has_representation(trial_of_nutrients_lagtime_c00022_results_2,'median of wildtype medians in minimal with metabolite').
text_representation('median of wildtype medians in minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00022_results_2,trial_of_nutrients_lagtime_c00022_results_2_proc).
procedure(trial_of_nutrients_lagtime_c00022_results_2_proc).
has_proposition(trial_of_nutrients_lagtime_c00022_results_2_proc,'procedures/remove_dupl_medians_nut.R').
link('procedures/remove_dupl_medians_nut.R').
has_part(trial_of_nutrients_lagtime_c00022_results,trial_of_nutrients_lagtime_c00022_results_3).
has_representation(trial_of_nutrients_lagtime_c00022_results_3,'difference between trial_of_nutrients_lagtime_c00022_results_1 and trial_of_nutrients_lagtime_c00022_results_2').
text_representation('difference between trial_of_nutrients_lagtime_c00022_results_1 and trial_of_nutrients_lagtime_c00022_results_2').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_result).
result(study_on_rich_growthrate_result).
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_1).
has_representation(study_on_rich_growthrate_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_rich_growthrate_result_1,'results/wr_kr_growth_rate.csv').
link('results/wr_kr_growth_rate.csv').
has_proposition(study_on_rich_growthrate_result_1,study_on_rich_growthrate_result_1_proc).
procedure(study_on_rich_growthrate_result_1_proc).
has_proposition(study_on_rich_growthrate_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_2).
has_representation(study_on_rich_growthrate_result_2,'bar graph (histogram) plotting study_on_rich_growthrate_result_1').
text_representation('bar graph (histogram) plotting study_on_rich_growthrate_result_1').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate1.tiff').
link('results/kr_wr_growth_rate1.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate2.tiff').
link('results/kr_wr_growth_rate2.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/overlayed_growth_rate.tiff').
link('results/overlayed_growth_rate.tiff').
has_proposition(study_on_rich_growthrate_result_2,study_on_rich_growthrate_result_2_proc).
procedure(study_on_rich_growthrate_result_2_proc).
has_proposition(study_on_rich_growthrate_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_conclusion).
conclusion(study_on_rich_growthrate_conclusion).
has_representation(study_on_rich_growthrate_conclusion,'The knockouts have higher growth rate in rich than the wild type').
text_representation('The knockouts have higher growth rate in rich than the wild type').
has_proposition(study_on_rich_growthrate_conclusion,'obtain statistical mode of study_on_rich_growthrate_result_1').
procedure('obtain statistical mode of study_on_rich_growthrate_result_1').
text_representation('obtain statistical mode of study_on_rich_growthrate_result_1').
has_part(study_of_nutrients_lagtime,trial_of_nutrients_lagtime_c01172).
trial(trial_of_nutrients_lagtime_c01172).
has_agent(trial_of_nutrients_lagtime_c01172,c01172).
metabolite(c01172).
has_proposition(trial_of_nutrients_lagtime_c01172_1,trial_of_nutrients_lagtime_c01172_1_design).
design(trial_of_nutrients_lagtime_c01172_1_design).
has_proposition(trial_of_nutrients_lagtime_c01172_1_design,trial_of_nutrients_lagtime_c01172_1_factor).
factor(trial_of_nutrients_lagtime_c01172_1_factor).
has_representation(trial_of_nutrients_lagtime_c01172_1_factor,'presence or absence of c01172').
has_input(trial_of_nutrients_lagtime_c01172_1,trial_of_nutrients_lagtime_c01172_1_data).
data(trial_of_nutrients_lagtime_c01172_1_data).
has_part(trial_of_nutrients_lagtime_c01172_1_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c01172_1_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c01172_1_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c01172_1,'mar07-trial7_expt001-plate002').
plate('mar07-trial7_expt001-plate002').
has_proposition(trial_of_nutrients_lagtime_c01172_1,trial_of_nutrients_lagtime_c01172_1_result).
result(trial_of_nutrients_lagtime_c01172_1_result).
has_part(trial_of_nutrients_lagtime_c01172_1_result,trial_of_nutrients_lagtime_c01172_1_result_1).
has_representation(trial_of_nutrients_lagtime_c01172_1_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c01172_1_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c01172_1_result_1,trial_of_nutrients_lagtime_c01172_1_result_1_proc).
procedure(trial_of_nutrients_lagtime_c01172_1_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c01172_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c01172_1_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c01172_1_result,trial_of_nutrients_lagtime_c01172_1_result_2).
has_representation(trial_of_nutrients_lagtime_c01172_1_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c01172_1_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c01172_1_result_2,trial_of_nutrients_lagtime_c01172_1_result_2_proc).
procedure(trial_of_nutrients_lagtime_c01172_1_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c01172_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c01172_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c01172,trial_of_nutrients_lagtime_c01172_results).
result(trial_of_nutrients_lagtime_c01172_results).
has_part(trial_of_nutrients_lagtime_c01172_results,trial_of_nutrients_lagtime_c01172_results_1).
has_representation(trial_of_nutrients_lagtime_c01172_results_1,'median of wildtype medians in minimal').
text_representation('median of wildtype medians in minimal').
has_proposition(trial_of_nutrients_lagtime_c01172_results_1,trial_of_nutrients_lagtime_c01172_results_1_proc).
procedure(trial_of_nutrients_lagtime_c01172_results_1_proc).
has_proposition(trial_of_nutrients_lagtime_c01172_results_1_proc,'procedures/remove_dupl_medians_nut.R').
link('procedures/remove_dupl_medians_nut.R').
has_part(trial_of_nutrients_lagtime_c01172_results,trial_of_nutrients_lagtime_c01172_results_2).
has_representation(trial_of_nutrients_lagtime_c01172_results_2,'median of wildtype medians in minimal with metabolite').
text_representation('median of wildtype medians in minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c01172_results_2,trial_of_nutrients_lagtime_c01172_results_2_proc).
procedure(trial_of_nutrients_lagtime_c01172_results_2_proc).
has_proposition(trial_of_nutrients_lagtime_c01172_results_2_proc,'procedures/remove_dupl_medians_nut.R').
link('procedures/remove_dupl_medians_nut.R').
has_part(trial_of_nutrients_lagtime_c01172_results,trial_of_nutrients_lagtime_c01172_results_3).
has_representation(trial_of_nutrients_lagtime_c01172_results_3,'difference between trial_of_nutrients_lagtime_c01172_results_1 and trial_of_nutrients_lagtime_c01172_results_2').
text_representation('difference between trial_of_nutrients_lagtime_c01172_results_1 and trial_of_nutrients_lagtime_c01172_results_2').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_result).
result(study_on_rich_growthrate_result).
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_1).
has_representation(study_on_rich_growthrate_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_rich_growthrate_result_1,'results/wr_kr_growth_rate.csv').
link('results/wr_kr_growth_rate.csv').
has_proposition(study_on_rich_growthrate_result_1,study_on_rich_growthrate_result_1_proc).
procedure(study_on_rich_growthrate_result_1_proc).
has_proposition(study_on_rich_growthrate_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_2).
has_representation(study_on_rich_growthrate_result_2,'bar graph (histogram) plotting study_on_rich_growthrate_result_1').
text_representation('bar graph (histogram) plotting study_on_rich_growthrate_result_1').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate1.tiff').
link('results/kr_wr_growth_rate1.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate2.tiff').
link('results/kr_wr_growth_rate2.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/overlayed_growth_rate.tiff').
link('results/overlayed_growth_rate.tiff').
has_proposition(study_on_rich_growthrate_result_2,study_on_rich_growthrate_result_2_proc).
procedure(study_on_rich_growthrate_result_2_proc).
has_proposition(study_on_rich_growthrate_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_conclusion).
conclusion(study_on_rich_growthrate_conclusion).
has_representation(study_on_rich_growthrate_conclusion,'The knockouts have higher growth rate in rich than the wild type').
text_representation('The knockouts have higher growth rate in rich than the wild type').
has_proposition(study_on_rich_growthrate_conclusion,'obtain statistical mode of study_on_rich_growthrate_result_1').
procedure('obtain statistical mode of study_on_rich_growthrate_result_1').
text_representation('obtain statistical mode of study_on_rich_growthrate_result_1').
has_part(study_of_nutrients_lagtime,trial_of_nutrients_lagtime_c00711).
trial(trial_of_nutrients_lagtime_c00711).
has_agent(trial_of_nutrients_lagtime_c00711,c00711).
metabolite(c00711).
has_proposition(trial_of_nutrients_lagtime_c00711_1,trial_of_nutrients_lagtime_c00711_1_design).
design(trial_of_nutrients_lagtime_c00711_1_design).
has_proposition(trial_of_nutrients_lagtime_c00711_1_design,trial_of_nutrients_lagtime_c00711_1_factor).
factor(trial_of_nutrients_lagtime_c00711_1_factor).
has_representation(trial_of_nutrients_lagtime_c00711_1_factor,'presence or absence of c00711').
has_input(trial_of_nutrients_lagtime_c00711_1,trial_of_nutrients_lagtime_c00711_1_data).
data(trial_of_nutrients_lagtime_c00711_1_data).
has_part(trial_of_nutrients_lagtime_c00711_1_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00711_1_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00711_1_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00711_1,'mar07-trial5_expt001-plate005').
plate('mar07-trial5_expt001-plate005').
has_proposition(trial_of_nutrients_lagtime_c00711_1,trial_of_nutrients_lagtime_c00711_1_result).
result(trial_of_nutrients_lagtime_c00711_1_result).
has_part(trial_of_nutrients_lagtime_c00711_1_result,trial_of_nutrients_lagtime_c00711_1_result_1).
has_representation(trial_of_nutrients_lagtime_c00711_1_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00711_1_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00711_1_result_1,trial_of_nutrients_lagtime_c00711_1_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00711_1_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00711_1_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00711_1_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00711_1_result,trial_of_nutrients_lagtime_c00711_1_result_2).
has_representation(trial_of_nutrients_lagtime_c00711_1_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00711_1_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00711_1_result_2,trial_of_nutrients_lagtime_c00711_1_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00711_1_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00711_1_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00711_1_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00711_2,trial_of_nutrients_lagtime_c00711_2_design).
design(trial_of_nutrients_lagtime_c00711_2_design).
has_proposition(trial_of_nutrients_lagtime_c00711_2_design,trial_of_nutrients_lagtime_c00711_2_factor).
factor(trial_of_nutrients_lagtime_c00711_2_factor).
has_representation(trial_of_nutrients_lagtime_c00711_2_factor,'presence or absence of c00711').
has_input(trial_of_nutrients_lagtime_c00711_2,trial_of_nutrients_lagtime_c00711_2_data).
data(trial_of_nutrients_lagtime_c00711_2_data).
has_part(trial_of_nutrients_lagtime_c00711_2_data,'48 values for lag time of wildtype on minimal medium').
has_part(trial_of_nutrients_lagtime_c00711_2_data,'48 values for lag time of wildtype on minimal medium with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00711_2_data,'../data/').
link('../data/').
located_in(trial_of_nutrients_lagtime_c00711_2,'mar07-trial9_expt001-plate002').
plate('mar07-trial9_expt001-plate002').
has_proposition(trial_of_nutrients_lagtime_c00711_2,trial_of_nutrients_lagtime_c00711_2_result).
result(trial_of_nutrients_lagtime_c00711_2_result).
has_part(trial_of_nutrients_lagtime_c00711_2_result,trial_of_nutrients_lagtime_c00711_2_result_1).
has_representation(trial_of_nutrients_lagtime_c00711_2_result_1,'median of wildtype on minimal').
text_representation('median of wildtype on minimal').
has_proposition(trial_of_nutrients_lagtime_c00711_2_result_1,'results/miy_lag_time_growth_wmmedians.txt').
link('results/miy_lag_time_growth_wmmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00711_2_result_1,trial_of_nutrients_lagtime_c00711_2_result_1_proc).
procedure(trial_of_nutrients_lagtime_c00711_2_result_1_proc).
has_representation(trial_of_nutrients_lagtime_c00711_2_result_1_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00711_2_result_1_proc,'procedures/plotKMedians.R').
link('procedures/plotKMedians.R').
has_part(trial_of_nutrients_lagtime_c00711_2_result,trial_of_nutrients_lagtime_c00711_2_result_2).
has_representation(trial_of_nutrients_lagtime_c00711_2_result_2,'median of wildtype on minimal with metabolite').
text_representation('median of wildtype on minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00711_2_result_2,'results/miy_lag_time_growth_wmnmedians.txt').
link('results/miy_lag_time_growth_wmnmedians.txt').
has_proposition(trial_of_nutrients_lagtime_c00711_2_result_2,trial_of_nutrients_lagtime_c00711_2_result_2_proc).
procedure(trial_of_nutrients_lagtime_c00711_2_result_2_proc).
has_representation(trial_of_nutrients_lagtime_c00711_2_result_2_proc,'procedure for obtaining median').
text_representation('procedure for obtaining median').
has_proposition(trial_of_nutrients_lagtime_c00711_2_result_2_proc,'procedures/plotWMedians.R').
link('procedures/plotWMedians.R').
has_proposition(trial_of_nutrients_lagtime_c00711,trial_of_nutrients_lagtime_c00711_results).
result(trial_of_nutrients_lagtime_c00711_results).
has_part(trial_of_nutrients_lagtime_c00711_results,trial_of_nutrients_lagtime_c00711_results_1).
has_representation(trial_of_nutrients_lagtime_c00711_results_1,'median of wildtype medians in minimal').
text_representation('median of wildtype medians in minimal').
has_proposition(trial_of_nutrients_lagtime_c00711_results_1,trial_of_nutrients_lagtime_c00711_results_1_proc).
procedure(trial_of_nutrients_lagtime_c00711_results_1_proc).
has_proposition(trial_of_nutrients_lagtime_c00711_results_1_proc,'procedures/remove_dupl_medians_nut.R').
link('procedures/remove_dupl_medians_nut.R').
has_part(trial_of_nutrients_lagtime_c00711_results,trial_of_nutrients_lagtime_c00711_results_2).
has_representation(trial_of_nutrients_lagtime_c00711_results_2,'median of wildtype medians in minimal with metabolite').
text_representation('median of wildtype medians in minimal with metabolite').
has_proposition(trial_of_nutrients_lagtime_c00711_results_2,trial_of_nutrients_lagtime_c00711_results_2_proc).
procedure(trial_of_nutrients_lagtime_c00711_results_2_proc).
has_proposition(trial_of_nutrients_lagtime_c00711_results_2_proc,'procedures/remove_dupl_medians_nut.R').
link('procedures/remove_dupl_medians_nut.R').
has_part(trial_of_nutrients_lagtime_c00711_results,trial_of_nutrients_lagtime_c00711_results_3).
has_representation(trial_of_nutrients_lagtime_c00711_results_3,'difference between trial_of_nutrients_lagtime_c00711_results_1 and trial_of_nutrients_lagtime_c00711_results_2').
text_representation('difference between trial_of_nutrients_lagtime_c00711_results_1 and trial_of_nutrients_lagtime_c00711_results_2').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_result).
result(study_on_rich_growthrate_result).
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_1).
has_representation(study_on_rich_growthrate_result_1,'vector of differences').
text_representation('vector of differences').
has_proposition(study_on_rich_growthrate_result_1,'results/wr_kr_growth_rate.csv').
link('results/wr_kr_growth_rate.csv').
has_proposition(study_on_rich_growthrate_result_1,study_on_rich_growthrate_result_1_proc).
procedure(study_on_rich_growthrate_result_1_proc).
has_proposition(study_on_rich_growthrate_result_1_proc,'procedures/plot3histogramsNoDupl.R').
link('procedures/plot3histogramsNoDupl.R').
has_part(study_on_rich_growthrate_result,study_on_rich_growthrate_result_2).
has_representation(study_on_rich_growthrate_result_2,'bar graph (histogram) plotting study_on_rich_growthrate_result_1').
text_representation('bar graph (histogram) plotting study_on_rich_growthrate_result_1').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate1.tiff').
link('results/kr_wr_growth_rate1.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/kr_wr_growth_rate2.tiff').
link('results/kr_wr_growth_rate2.tiff').
has_proposition(study_on_rich_growthrate_result_2,'results/overlayed_growth_rate.tiff').
link('results/overlayed_growth_rate.tiff').
has_proposition(study_on_rich_growthrate_result_2,study_on_rich_growthrate_result_2_proc).
procedure(study_on_rich_growthrate_result_2_proc).
has_proposition(study_on_rich_growthrate_result_2_proc,'procedures/plot2pretty.m').
link('procedures/plot2pretty.m').
has_proposition(study_on_rich_growthrate,study_on_rich_growthrate_conclusion).
conclusion(study_on_rich_growthrate_conclusion).
has_representation(study_on_rich_growthrate_conclusion,'The knockouts have higher growth rate in rich than the wild type').
text_representation('The knockouts have higher growth rate in rich than the wild type').
has_proposition(study_on_rich_growthrate_conclusion,'obtain statistical mode of study_on_rich_growthrate_result_1').
procedure('obtain statistical mode of study_on_rich_growthrate_result_1').
text_representation('obtain statistical mode of study_on_rich_growthrate_result_1').

%%%%%%%%%%%
% A-box %


has_transitive_part(X,Y):-has_part(X,Y).
has_transitive_part(X,Z):-has_part(X,Y),has_transitive_part(Y,Z).

has_object(Y,A) :- has_transitive_part(X,Y),has_object(X,A).
has_participant(Y,A) :- has_transitive_part(X,Y),has_participant(X,A).

has_gene_participant(X,Y) :-
	has_participant(X,Y),
	text_gene_process(X,Y).

text_gene_process(X,knockout(Gene_name)):-
	gene_name_in_x(X,Gene_name).

gene_name_in_x(X,Gene_name) :-
	name(X, X_list),
	name(Gene_name, Gene_name_list),
	sublist(Gene_name_list,X_list).

sublist(S,L) :-
	append(_,L2,L),
	append(S,_,L2).


%%%%%%%
% from LABORS %

organism(s_cerevisiae).
material_entity(organism).
knockout(yer152c).
knockout(ygl202w).
knockout(yjl060w).
knockout(ydl060w).
knockout(yer183c).
knockout(ygr248w).
knockout(yhr163w).
knockout(ynr034w).
knockout(yil033c).
knockout(ynr073c).
knockout(yll060c).
knockout(ymr020w).
knockout(ylr017w).
knockout(ylr209c).
knockout(ynr027w).
knockout(ypr121w).
knockout(yjl218w).
knockout(ydl168w).
knockout(yjl045w).
knockout(ylr070c).

