Procedure to automatically infer hypotheses relating enzymes and genes aaa

The ILP program C-Progol 5 was used to automatically infer hypotheses
for the AAA rerun. The inference was a restricted form of Abductive
Logic Programming where an incomplete background theory and
experimental observations were used to infer facts concerning gene
function. A logic program corresponding to the Aromatic Amino Acid
Biosynthesis pathway of Yeast was used as the background theory and
the infered facts matched an ORF from yeast to a catalysing
enzyme. The hypotheses completed the background theory by
rediscovering the missing ORF/Enzyme relations.

Relevant code: ../informatics/code/discovery_loops.tar.gz