====================================================== Media tables (comparison of knockout with wildtype) k < w, k = w, k > w ====================================================== max_od_emg media < = > defined 4 10 0 defplus 3 6 5 rich 6 7 1 dur_linear media < = > defined 1 12 1 defplus 0 13 1 rich 6 8 0 end_linear media < = > defined 2 7 5 defplus 2 8 4 rich 10 1 3 start_linear media < = > defined 0 10 4 defplus 1 9 4 rich 10 1 3 miy_lag_time media < = > defined 1 11 2 defplus 1 11 2 rich 10 1 3 sn_ratio media < = > defined 7 7 0 defplus 4 9 1 rich 1 10 3 max_od_time_emg media < = > defined 0 2 12 defplus 0 4 10 rich 7 4 3 lag_time media < = > defined 3 11 0 defplus 1 13 0 rich 6 8 0 double_time media < = > defined 0 7 7 defplus 5 7 2 rich 4 8 2 threshold media < = > defined 9 5 0 defplus 4 5 5 rich 2 8 4 linear_slope media < = > defined 7 7 0 defplus 4 5 5 rich 3 7 4 global_max_od_time media < = > defined 6 8 0 defplus 6 8 0 rich 2 11 1 global_max_od media < = > defined 7 7 0 defplus 3 7 4 rich 4 7 3 ============================================================ Strain tables (comparison with nutrient vs without nutrient) m+ < m, m+ = m, m+ > m ============================================================ max_od_emg strain < = > knockout 0 6 8 wildtype 0 14 0 dur_linear strain < = > knockout 2 12 0 wildtype 1 13 0 end_linear strain < = > knockout 2 12 0 wildtype 0 14 0 start_linear strain < = > knockout 0 14 0 wildtype 0 14 0 miy_lag_time strain < = > knockout 0 13 1 wildtype 0 14 0 sn_ratio strain < = > knockout 0 10 4 wildtype 0 14 0 max_od_time_emg strain < = > knockout 8 6 0 wildtype 6 8 0 lag_time strain < = > knockout 0 14 0 wildtype 0 14 0 double_time strain < = > knockout 7 7 0 wildtype 4 10 0 threshold strain < = > knockout 0 7 7 wildtype 0 10 4 linear_slope strain < = > knockout 0 7 7 wildtype 0 10 4 global_max_od_time strain < = > knockout 4 10 0 wildtype 0 14 0 global_max_od strain < = > knockout 0 6 8 wildtype 0 14 0 ============================================================ Delta-delta tables (four way comparison) delta_k < delta_w, delta_k = delta_w, delta_k > delta_w ============================================================ max_od_emg < = > 0 7 7 ['YDR007W/C00078:nature-loop2-expt001-plate003', 'YDR354W/C00078:nature-loop2-expt001-plate004', 'YGL026C/C00078:nature-loop2-expt001-plate005', 'YKL211C/C00078:nature-loop2-expt001-plate006', 'YDR007W/C00078:nature-loop3-expt002-plate002', 'YER090W/C00078:nature-loop3-expt002-plate005', 'YKL211C/C00078:nature-loop3-expt002-plate007'] dur_linear < = > 0 14 0 [] end_linear < = > 1 13 0 ['YKL211C/C00078:nature-loop3-expt002-plate007'] start_linear < = > 0 14 0 [] miy_lag_time < = > 0 13 1 ['YKL211C/C00078:nature-loop3-expt002-plate007'] sn_ratio < = > 0 11 3 ['YDR354W/C00078:nature-loop2-expt001-plate004', 'YDR007W/C00078:nature-loop3-expt002-plate002', 'YKL211C/C00078:nature-loop3-expt002-plate007'] max_od_time_emg < = > 5 9 0 ['YDR354W/C00078:nature-loop2-expt001-plate004', 'YGL026C/C00078:nature-loop2-expt001-plate005', 'YKL211C/C00078:nature-loop2-expt001-plate006', 'YER090W/C00078:nature-loop3-expt002-plate005', 'YKL211C/C00078:nature-loop3-expt002-plate007'] lag_time < = > 0 14 0 [] double_time < = > 5 9 0 ['YDR354W/C00078:nature-loop2-expt001-plate004', 'YGL026C/C00078:nature-loop2-expt001-plate005', 'YKL211C/C00078:nature-loop2-expt001-plate006', 'YER090W/C00078:nature-loop3-expt002-plate005', 'YKL211C/C00078:nature-loop3-expt002-plate007'] threshold < = > 0 7 7 ['YDR007W/C00078:nature-loop2-expt001-plate003', 'YDR354W/C00078:nature-loop2-expt001-plate004', 'YGL026C/C00078:nature-loop2-expt001-plate005', 'YKL211C/C00078:nature-loop2-expt001-plate006', 'YDR007W/C00078:nature-loop3-expt002-plate002', 'YER090W/C00078:nature-loop3-expt002-plate005', 'YKL211C/C00078:nature-loop3-expt002-plate007'] linear_slope < = > 0 7 7 ['YDR007W/C00078:nature-loop2-expt001-plate003', 'YDR354W/C00078:nature-loop2-expt001-plate004', 'YGL026C/C00078:nature-loop2-expt001-plate005', 'YKL211C/C00078:nature-loop2-expt001-plate006', 'YDR007W/C00078:nature-loop3-expt002-plate002', 'YER090W/C00078:nature-loop3-expt002-plate005', 'YKL211C/C00078:nature-loop3-expt002-plate007'] global_max_od_time < = > 3 11 0 ['YKL211C/C00078:nature-loop2-expt001-plate006', 'YDR007W/C00078:nature-loop3-expt002-plate002', 'YKL211C/C00078:nature-loop3-expt002-plate007'] global_max_od < = > 0 7 7 ['YDR007W/C00078:nature-loop2-expt001-plate003', 'YDR354W/C00078:nature-loop2-expt001-plate004', 'YGL026C/C00078:nature-loop2-expt001-plate005', 'YKL211C/C00078:nature-loop2-expt001-plate006', 'YDR007W/C00078:nature-loop3-expt002-plate002', 'YER090W/C00078:nature-loop3-expt002-plate005', 'YKL211C/C00078:nature-loop3-expt002-plate007']