====================================================== Media tables (comparison of knockout with wildtype) k < w, k = w, k > w ====================================================== max_od_emg media < = > defined 7 4 3 defplus 4 2 8 rich 7 3 4 dur_linear media < = > defined 1 9 4 defplus 2 10 2 rich 6 8 0 end_linear media < = > defined 3 5 6 defplus 4 6 4 rich 10 1 3 start_linear media < = > defined 3 4 7 defplus 2 8 4 rich 10 1 3 miy_lag_time media < = > defined 7 3 4 defplus 4 5 5 rich 10 1 3 sn_ratio media < = > defined 10 3 1 defplus 4 9 1 rich 2 6 6 max_od_time_emg media < = > defined 1 0 13 defplus 2 0 12 rich 8 3 3 lag_time media < = > defined 4 7 3 defplus 2 9 3 rich 5 8 1 double_time media < = > defined 1 0 13 defplus 8 1 5 rich 6 5 3 threshold media < = > defined 12 0 2 defplus 6 1 7 rich 3 5 6 linear_slope media < = > defined 12 0 2 defplus 6 1 7 rich 3 5 6 global_max_od_time media < = > defined 6 8 0 defplus 7 7 0 rich 3 6 5 global_max_od media < = > defined 12 1 1 defplus 5 1 8 rich 6 2 6 ============================================================ Strain tables (comparison with nutrient vs without nutrient) m+ < m, m+ = m, m+ > m ============================================================ max_od_emg strain < = > knockout 0 5 9 wildtype 0 14 0 dur_linear strain < = > knockout 6 8 0 wildtype 1 13 0 end_linear strain < = > knockout 3 9 2 wildtype 1 13 0 start_linear strain < = > knockout 2 12 0 wildtype 0 14 0 miy_lag_time strain < = > knockout 1 8 5 wildtype 0 14 0 sn_ratio strain < = > knockout 1 8 5 wildtype 0 14 0 max_od_time_emg strain < = > knockout 10 3 1 wildtype 6 8 0 lag_time strain < = > knockout 0 13 1 wildtype 0 14 0 double_time strain < = > knockout 9 4 1 wildtype 7 4 3 threshold strain < = > knockout 0 4 10 wildtype 2 4 8 linear_slope strain < = > knockout 0 4 10 wildtype 2 4 8 global_max_od_time strain < = > knockout 5 9 0 wildtype 0 13 1 global_max_od strain < = > knockout 0 5 9 wildtype 0 14 0 ============================================================ Delta-delta tables (four way comparison) delta_k < delta_w, delta_k = delta_w, delta_k > delta_w ============================================================ max_od_emg < = > 2 4 8 ['YDR007W/C00078:nature-loop2-expt001-plate003', 'YDR354W/C00078:nature-loop2-expt001-plate004', 'YGL026C/C00078:nature-loop2-expt001-plate005', 'YKL211C/C00078:nature-loop2-expt001-plate006', 'YNL316C/C00078:nature-loop2-expt001-plate008', 'YDR007W/C00078:nature-loop3-expt002-plate002', 'YDR354W/C00078:nature-loop3-expt002-plate004', 'YER090W/C00078:nature-loop3-expt002-plate005', 'YGL026C/C00078:nature-loop3-expt002-plate006', 'YKL211C/C00078:nature-loop3-expt002-plate007'] dur_linear < = > 2 11 1 ['YGL026C/C00078:nature-loop2-expt001-plate005', 'YDR007W/C00078:nature-loop3-expt002-plate002', 'YKL211C/C00078:nature-loop3-expt002-plate007'] end_linear < = > 2 9 3 ['YBR166C/C00078:nature-loop2-expt001-plate001', 'YGL026C/C00078:nature-loop2-expt001-plate005', 'YGL026C/C00078:nature-loop3-expt002-plate006', 'YKL211C/C00078:nature-loop3-expt002-plate007', 'YNL316C/C00078:nature-loop3-expt002-plate008'] start_linear < = > 3 9 2 ['YBR166C/C00078:nature-loop2-expt001-plate001', 'YNL316C/C00078:nature-loop2-expt001-plate008', 'YDR354W/C00078:nature-loop3-expt002-plate004', 'YKL211C/C00078:nature-loop3-expt002-plate007', 'YNL316C/C00078:nature-loop3-expt002-plate008'] miy_lag_time < = > 1 5 8 ['YBR166C/C00078:nature-loop2-expt001-plate001', 'YDR007W/C00078:nature-loop2-expt001-plate003', 'YNL316C/C00078:nature-loop2-expt001-plate008', 'YBR166C/C00078:nature-loop3-expt002-plate001', 'YDR007W/C00078:nature-loop3-expt002-plate002', 'YDR354W/C00078:nature-loop3-expt002-plate004', 'YKL211C/C00078:nature-loop3-expt002-plate007', 'YNL316C/C00078:nature-loop3-expt002-plate008', 'YDR035W/C00078:nature-loop3-expt004-plate003'] sn_ratio < = > 0 10 4 ['YDR354W/C00078:nature-loop2-expt001-plate004', 'YDR007W/C00078:nature-loop3-expt002-plate002', 'YDR354W/C00078:nature-loop3-expt002-plate004', 'YKL211C/C00078:nature-loop3-expt002-plate007'] max_od_time_emg < = > 9 3 2 ['YDR007W/C00078:nature-loop2-expt001-plate003', 'YDR354W/C00078:nature-loop2-expt001-plate004', 'YGL026C/C00078:nature-loop2-expt001-plate005', 'YKL211C/C00078:nature-loop2-expt001-plate006', 'YNL316C/C00078:nature-loop2-expt001-plate008', 'YBR166C/C00078:nature-loop3-expt002-plate001', 'YDR007W/C00078:nature-loop3-expt002-plate002', 'YDR354W/C00078:nature-loop3-expt002-plate004', 'YER090W/C00078:nature-loop3-expt002-plate005', 'YGL026C/C00078:nature-loop3-expt002-plate006', 'YKL211C/C00078:nature-loop3-expt002-plate007'] lag_time < = > 0 12 2 ['YDR007W/C00078:nature-loop3-expt002-plate002', 'YDR035W/C00078:nature-loop3-expt004-plate003'] double_time < = > 11 0 3 ['YBR166C/C00078:nature-loop2-expt001-plate001', 'YDR007W/C00078:nature-loop2-expt001-plate003', 'YDR354W/C00078:nature-loop2-expt001-plate004', 'YGL026C/C00078:nature-loop2-expt001-plate005', 'YKL211C/C00078:nature-loop2-expt001-plate006', 'YNL316C/C00078:nature-loop2-expt001-plate008', 'YBR166C/C00078:nature-loop3-expt002-plate001', 'YDR007W/C00078:nature-loop3-expt002-plate002', 'YDR354W/C00078:nature-loop3-expt002-plate004', 'YER090W/C00078:nature-loop3-expt002-plate005', 'YGL026C/C00078:nature-loop3-expt002-plate006', 'YKL211C/C00078:nature-loop3-expt002-plate007', 'YNL316C/C00078:nature-loop3-expt002-plate008', 'YDR035W/C00078:nature-loop3-expt004-plate003'] threshold < = > 2 4 8 ['YDR007W/C00078:nature-loop2-expt001-plate003', 'YDR354W/C00078:nature-loop2-expt001-plate004', 'YGL026C/C00078:nature-loop2-expt001-plate005', 'YKL211C/C00078:nature-loop2-expt001-plate006', 'YNL316C/C00078:nature-loop2-expt001-plate008', 'YDR007W/C00078:nature-loop3-expt002-plate002', 'YDR354W/C00078:nature-loop3-expt002-plate004', 'YER090W/C00078:nature-loop3-expt002-plate005', 'YGL026C/C00078:nature-loop3-expt002-plate006', 'YKL211C/C00078:nature-loop3-expt002-plate007'] linear_slope < = > 2 4 8 ['YDR007W/C00078:nature-loop2-expt001-plate003', 'YDR354W/C00078:nature-loop2-expt001-plate004', 'YGL026C/C00078:nature-loop2-expt001-plate005', 'YKL211C/C00078:nature-loop2-expt001-plate006', 'YNL316C/C00078:nature-loop2-expt001-plate008', 'YDR007W/C00078:nature-loop3-expt002-plate002', 'YDR354W/C00078:nature-loop3-expt002-plate004', 'YER090W/C00078:nature-loop3-expt002-plate005', 'YGL026C/C00078:nature-loop3-expt002-plate006', 'YKL211C/C00078:nature-loop3-expt002-plate007'] global_max_od_time < = > 6 8 0 ['YDR354W/C00078:nature-loop2-expt001-plate004', 'YKL211C/C00078:nature-loop2-expt001-plate006', 'YDR007W/C00078:nature-loop3-expt002-plate002', 'YER090W/C00078:nature-loop3-expt002-plate005', 'YGL026C/C00078:nature-loop3-expt002-plate006', 'YKL211C/C00078:nature-loop3-expt002-plate007'] global_max_od < = > 1 4 9 ['YDR007W/C00078:nature-loop2-expt001-plate003', 'YDR354W/C00078:nature-loop2-expt001-plate004', 'YGL026C/C00078:nature-loop2-expt001-plate005', 'YKL211C/C00078:nature-loop2-expt001-plate006', 'YNL316C/C00078:nature-loop2-expt001-plate008', 'YDR007W/C00078:nature-loop3-expt002-plate002', 'YDR354W/C00078:nature-loop3-expt002-plate004', 'YER090W/C00078:nature-loop3-expt002-plate005', 'YGL026C/C00078:nature-loop3-expt002-plate006', 'YKL211C/C00078:nature-loop3-expt002-plate007']