====================================================== Media tables (comparison of knockout with wildtype) k < w, k = w, k > w ====================================================== max_od_emg media < = > defined 1 2 1 defplus 0 3 1 rich 0 1 3 dur_linear media < = > defined 0 4 0 defplus 0 3 1 rich 0 3 1 end_linear media < = > defined 0 1 3 defplus 0 2 2 rich 1 1 2 start_linear media < = > defined 0 1 3 defplus 0 2 2 rich 1 1 2 miy_lag_time media < = > defined 0 2 2 defplus 0 3 1 rich 1 1 2 sn_ratio media < = > defined 1 3 0 defplus 0 4 0 rich 0 2 2 max_od_time_emg media < = > defined 0 1 3 defplus 0 2 2 rich 1 1 2 lag_time media < = > defined 0 4 0 defplus 1 3 0 rich 1 3 0 double_time media < = > defined 0 2 2 defplus 0 2 2 rich 0 2 2 threshold media < = > defined 3 1 0 defplus 2 2 0 rich 2 2 0 linear_slope media < = > defined 3 1 0 defplus 2 2 0 rich 2 2 0 global_max_od_time media < = > defined 0 3 1 defplus 1 3 0 rich 2 2 0 global_max_od media < = > defined 1 3 0 defplus 0 4 0 rich 0 0 4 ============================================================ Strain tables (comparison with nutrient vs without nutrient) m+ < m, m+ = m, m+ > m ============================================================ max_od_emg strain < = > knockout 1 2 1 wildtype 0 4 0 dur_linear strain < = > knockout 1 3 0 wildtype 1 3 0 end_linear strain < = > knockout 2 1 1 wildtype 0 4 0 start_linear strain < = > knockout 2 2 0 wildtype 0 4 0 miy_lag_time strain < = > knockout 1 3 0 wildtype 0 4 0 sn_ratio strain < = > knockout 1 2 1 wildtype 0 4 0 max_od_time_emg strain < = > knockout 2 1 1 wildtype 1 3 0 lag_time strain < = > knockout 0 4 0 wildtype 0 4 0 double_time strain < = > knockout 2 1 1 wildtype 1 3 0 threshold strain < = > knockout 1 1 2 wildtype 0 2 2 linear_slope strain < = > knockout 1 1 2 wildtype 0 3 1 global_max_od_time strain < = > knockout 2 2 0 wildtype 0 3 1 global_max_od strain < = > knockout 1 2 1 wildtype 0 4 0 ============================================================ Delta-delta tables (four way comparison) delta_k < delta_w, delta_k = delta_w, delta_k > delta_w ============================================================ max_od_emg < = > 0 3 1 ['YNL316C/C00079:nature-loop3-expt005-plate008'] dur_linear < = > 0 3 1 ['YDR035W/C00079:nature-loop3-expt005-plate003'] end_linear < = > 1 3 0 ['YNL316C/C00079:nature-loop3-expt005-plate008'] start_linear < = > 1 3 0 ['YNL316C/C00079:nature-loop3-expt005-plate008'] miy_lag_time < = > 0 4 0 [] sn_ratio < = > 0 4 0 [] max_od_time_emg < = > 1 2 1 ['YDR035W/C00079:nature-loop3-expt005-plate003', 'YNL316C/C00079:nature-loop3-expt005-plate008'] lag_time < = > 0 4 0 [] double_time < = > 1 2 1 ['YDR035W/C00079:nature-loop3-expt005-plate003', 'YNL316C/C00079:nature-loop3-expt005-plate008'] threshold < = > 1 2 1 ['YDR035W/C00079:nature-loop3-expt005-plate003', 'YNL316C/C00079:nature-loop3-expt005-plate008'] linear_slope < = > 1 2 1 ['YDR035W/C00079:nature-loop3-expt005-plate003', 'YNL316C/C00079:nature-loop3-expt005-plate008'] global_max_od_time < = > 1 3 0 ['YNL316C/C00079:nature-loop3-expt005-plate008'] global_max_od < = > 0 3 1 ['YNL316C/C00079:nature-loop3-expt005-plate008']