====================================================== Media tables (comparison of knockout with wildtype) k < w, k = w, k > w ====================================================== max_od_emg media < = > defined 4 7 0 defplus 2 7 2 rich 6 3 2 dur_linear media < = > defined 0 10 1 defplus 0 6 5 rich 4 7 0 end_linear media < = > defined 0 4 7 defplus 1 3 7 rich 7 2 2 start_linear media < = > defined 0 5 6 defplus 1 3 7 rich 7 2 2 miy_lag_time media < = > defined 0 7 4 defplus 1 5 5 rich 7 2 2 sn_ratio media < = > defined 2 9 0 defplus 2 9 0 rich 1 9 1 max_od_time_emg media < = > defined 0 3 8 defplus 0 3 8 rich 6 5 0 lag_time media < = > defined 3 8 0 defplus 2 9 0 rich 4 7 0 double_time media < = > defined 0 6 5 defplus 0 4 7 rich 2 6 3 threshold media < = > defined 8 3 0 defplus 6 5 0 rich 3 6 2 linear_slope media < = > defined 8 3 0 defplus 6 5 0 rich 3 6 2 global_max_od_time media < = > defined 0 9 2 defplus 0 8 3 rich 2 9 0 global_max_od media < = > defined 5 6 0 defplus 4 6 1 rich 6 1 4 ============================================================ Strain tables (comparison with nutrient vs without nutrient) m+ < m, m+ = m, m+ > m ============================================================ max_od_emg strain < = > knockout 0 9 2 wildtype 0 11 0 dur_linear strain < = > knockout 1 10 0 wildtype 1 10 0 end_linear strain < = > knockout 2 6 3 wildtype 0 11 0 start_linear strain < = > knockout 2 6 3 wildtype 0 11 0 miy_lag_time strain < = > knockout 1 7 3 wildtype 0 11 0 sn_ratio strain < = > knockout 0 9 2 wildtype 0 11 0 max_od_time_emg strain < = > knockout 2 7 2 wildtype 0 11 0 lag_time strain < = > knockout 0 11 0 wildtype 0 11 0 double_time strain < = > knockout 3 6 2 wildtype 1 10 0 threshold strain < = > knockout 2 7 2 wildtype 0 10 1 linear_slope strain < = > knockout 2 7 2 wildtype 0 9 2 global_max_od_time strain < = > knockout 5 6 0 wildtype 6 5 0 global_max_od strain < = > knockout 0 8 3 wildtype 0 11 0 ============================================================ Delta-delta tables (four way comparison) delta_k < delta_w, delta_k = delta_w, delta_k > delta_w ============================================================ max_od_emg < = > 0 11 0 [] dur_linear < = > 0 11 0 [] end_linear < = > 0 8 3 ['YDR035W/C00082:nature-loop2-expt001-plate009', 'YDR035W/C00082:nature-loop3-expt006-plate002', 'YKL211C/C00082:nature-loop3-expt006-plate006'] start_linear < = > 0 9 2 ['YDR035W/C00082:nature-loop2-expt001-plate009', 'YDR035W/C00082:nature-loop3-expt006-plate002'] miy_lag_time < = > 0 9 2 ['YDR035W/C00082:nature-loop2-expt001-plate009', 'YDR035W/C00082:nature-loop3-expt006-plate002'] sn_ratio < = > 0 11 0 [] max_od_time_emg < = > 0 9 2 ['YDR035W/C00082:nature-loop2-expt001-plate009', 'YDR035W/C00082:nature-loop3-expt006-plate002'] lag_time < = > 0 11 0 [] double_time < = > 1 8 2 ['YDR035W/C00082:nature-loop3-expt006-plate002', 'YER090W/C00082:nature-loop3-expt006-plate004', 'YKL211C/C00082:nature-loop3-expt006-plate006'] threshold < = > 2 9 0 ['YDR035W/C00082:nature-loop3-expt006-plate002', 'YKL211C/C00082:nature-loop3-expt006-plate006'] linear_slope < = > 2 9 0 ['YDR035W/C00082:nature-loop3-expt006-plate002', 'YKL211C/C00082:nature-loop3-expt006-plate006'] global_max_od_time < = > 0 8 3 ['YDR007W/C00082:nature-loop3-expt006-plate001', 'YDR354W/C00082:nature-loop3-expt006-plate003', 'YKL211C/C00082:nature-loop3-expt006-plate006'] global_max_od < = > 0 11 0 []