====================================================== Media tables (comparison of knockout with wildtype) k < w, k = w, k > w ====================================================== max_od_emg media < = > defined 7 4 0 defplus 5 2 4 rich 7 1 3 dur_linear media < = > defined 2 6 3 defplus 2 2 7 rich 4 7 0 end_linear media < = > defined 3 1 7 defplus 2 1 8 rich 8 1 2 start_linear media < = > defined 3 1 7 defplus 2 1 8 rich 7 2 2 miy_lag_time media < = > defined 5 0 6 defplus 4 1 6 rich 7 2 2 sn_ratio media < = > defined 6 4 1 defplus 4 6 1 rich 1 9 1 max_od_time_emg media < = > defined 3 0 8 defplus 2 0 9 rich 6 2 3 lag_time media < = > defined 3 7 1 defplus 5 3 3 rich 5 6 0 double_time media < = > defined 5 0 6 defplus 3 0 8 rich 2 6 3 threshold media < = > defined 11 0 0 defplus 8 1 2 rich 3 6 2 linear_slope media < = > defined 11 0 0 defplus 8 1 2 rich 3 6 2 global_max_od_time media < = > defined 3 4 4 defplus 5 0 6 rich 2 6 3 global_max_od media < = > defined 8 3 0 defplus 5 4 2 rich 7 0 4 ============================================================ Strain tables (comparison with nutrient vs without nutrient) m+ < m, m+ = m, m+ > m ============================================================ max_od_emg strain < = > knockout 1 5 5 wildtype 0 11 0 dur_linear strain < = > knockout 3 6 2 wildtype 3 8 0 end_linear strain < = > knockout 4 2 5 wildtype 2 8 1 start_linear strain < = > knockout 3 3 5 wildtype 1 9 1 miy_lag_time strain < = > knockout 1 4 6 wildtype 0 10 1 sn_ratio strain < = > knockout 1 7 3 wildtype 1 10 0 max_od_time_emg strain < = > knockout 3 4 4 wildtype 1 10 0 lag_time strain < = > knockout 1 9 1 wildtype 0 11 0 double_time strain < = > knockout 4 4 3 wildtype 4 6 1 threshold strain < = > knockout 2 4 5 wildtype 0 8 3 linear_slope strain < = > knockout 2 4 5 wildtype 0 7 4 global_max_od_time strain < = > knockout 6 4 1 wildtype 9 1 1 global_max_od strain < = > knockout 1 5 5 wildtype 1 10 0 ============================================================ Delta-delta tables (four way comparison) delta_k < delta_w, delta_k = delta_w, delta_k > delta_w ============================================================ max_od_emg < = > 0 8 3 ['YBR166C/C00079/C00082:nature-loop3-expt003-plate008', 'YBR166C/C00082:nature-loop3-expt004-plate001', 'YER090W/C00082:nature-loop3-expt006-plate004'] dur_linear < = > 2 9 0 ['YNL316C/C00079/C00082:nature-loop3-expt003-plate001', 'YER090W/C00082:nature-loop3-expt006-plate004'] end_linear < = > 2 0 9 ['YDR035W/C00082:nature-loop2-expt001-plate009', 'YNL316C/C00079/C00082:nature-loop3-expt003-plate001', 'YBR166C/C00079/C00082:nature-loop3-expt003-plate008', 'YBR166C/C00082:nature-loop3-expt004-plate001', 'YNL316C/C00082:nature-loop3-expt004-plate008', 'YDR007W/C00082:nature-loop3-expt006-plate001', 'YDR035W/C00082:nature-loop3-expt006-plate002', 'YDR354W/C00082:nature-loop3-expt006-plate003', 'YER090W/C00082:nature-loop3-expt006-plate004', 'YGL026C/C00082:nature-loop3-expt006-plate005', 'YKL211C/C00082:nature-loop3-expt006-plate006'] start_linear < = > 3 1 7 ['YDR035W/C00082:nature-loop2-expt001-plate009', 'YNL316C/C00079/C00082:nature-loop3-expt003-plate001', 'YBR166C/C00079/C00082:nature-loop3-expt003-plate008', 'YBR166C/C00082:nature-loop3-expt004-plate001', 'YDR007W/C00082:nature-loop3-expt006-plate001', 'YDR035W/C00082:nature-loop3-expt006-plate002', 'YDR354W/C00082:nature-loop3-expt006-plate003', 'YER090W/C00082:nature-loop3-expt006-plate004', 'YGL026C/C00082:nature-loop3-expt006-plate005', 'YKL211C/C00082:nature-loop3-expt006-plate006'] miy_lag_time < = > 3 0 8 ['YDR035W/C00082:nature-loop2-expt001-plate009', 'YNL316C/C00079/C00082:nature-loop3-expt003-plate001', 'YBR166C/C00079/C00082:nature-loop3-expt003-plate008', 'YBR166C/C00082:nature-loop3-expt004-plate001', 'YNL316C/C00082:nature-loop3-expt004-plate008', 'YDR007W/C00082:nature-loop3-expt006-plate001', 'YDR035W/C00082:nature-loop3-expt006-plate002', 'YDR354W/C00082:nature-loop3-expt006-plate003', 'YER090W/C00082:nature-loop3-expt006-plate004', 'YGL026C/C00082:nature-loop3-expt006-plate005', 'YKL211C/C00082:nature-loop3-expt006-plate006'] sn_ratio < = > 2 7 2 ['YNL316C/C00079/C00082:nature-loop3-expt003-plate001', 'YBR166C/C00079/C00082:nature-loop3-expt003-plate008', 'YNL316C/C00082:nature-loop3-expt004-plate008', 'YDR354W/C00082:nature-loop3-expt006-plate003'] max_od_time_emg < = > 2 4 5 ['YDR035W/C00082:nature-loop2-expt001-plate009', 'YNL316C/C00079/C00082:nature-loop3-expt003-plate001', 'YBR166C/C00079/C00082:nature-loop3-expt003-plate008', 'YBR166C/C00082:nature-loop3-expt004-plate001', 'YDR035W/C00082:nature-loop3-expt006-plate002', 'YGL026C/C00082:nature-loop3-expt006-plate005', 'YKL211C/C00082:nature-loop3-expt006-plate006'] lag_time < = > 0 10 1 ['YBR166C/C00082:nature-loop3-expt004-plate001'] double_time < = > 3 1 7 ['YNL316C/C00079/C00082:nature-loop3-expt003-plate001', 'YBR166C/C00079/C00082:nature-loop3-expt003-plate008', 'YBR166C/C00082:nature-loop3-expt004-plate001', 'YNL316C/C00082:nature-loop3-expt004-plate008', 'YDR007W/C00082:nature-loop3-expt006-plate001', 'YDR035W/C00082:nature-loop3-expt006-plate002', 'YDR354W/C00082:nature-loop3-expt006-plate003', 'YER090W/C00082:nature-loop3-expt006-plate004', 'YGL026C/C00082:nature-loop3-expt006-plate005', 'YKL211C/C00082:nature-loop3-expt006-plate006'] threshold < = > 3 6 2 ['YNL316C/C00079/C00082:nature-loop3-expt003-plate001', 'YBR166C/C00079/C00082:nature-loop3-expt003-plate008', 'YBR166C/C00082:nature-loop3-expt004-plate001', 'YDR035W/C00082:nature-loop3-expt006-plate002', 'YKL211C/C00082:nature-loop3-expt006-plate006'] linear_slope < = > 3 5 3 ['YNL316C/C00079/C00082:nature-loop3-expt003-plate001', 'YBR166C/C00079/C00082:nature-loop3-expt003-plate008', 'YBR166C/C00082:nature-loop3-expt004-plate001', 'YDR035W/C00082:nature-loop3-expt006-plate002', 'YER090W/C00082:nature-loop3-expt006-plate004', 'YKL211C/C00082:nature-loop3-expt006-plate006'] global_max_od_time < = > 2 1 8 ['YDR035W/C00082:nature-loop2-expt001-plate009', 'YNL316C/C00079/C00082:nature-loop3-expt003-plate001', 'YBR166C/C00079/C00082:nature-loop3-expt003-plate008', 'YBR166C/C00082:nature-loop3-expt004-plate001', 'YNL316C/C00082:nature-loop3-expt004-plate008', 'YDR007W/C00082:nature-loop3-expt006-plate001', 'YDR035W/C00082:nature-loop3-expt006-plate002', 'YDR354W/C00082:nature-loop3-expt006-plate003', 'YGL026C/C00082:nature-loop3-expt006-plate005', 'YKL211C/C00082:nature-loop3-expt006-plate006'] global_max_od < = > 0 8 3 ['YBR166C/C00079/C00082:nature-loop3-expt003-plate008', 'YBR166C/C00082:nature-loop3-expt004-plate001', 'YER090W/C00082:nature-loop3-expt006-plate004']