====================================================== Media tables (comparison of knockout with wildtype) k < w, k = w, k > w ====================================================== max_od_emg media < = > defined 9 13 0 defplus 12 10 0 rich 7 9 6 dur_linear media < = > defined 0 19 3 defplus 1 15 6 rich 2 19 1 end_linear media < = > defined 0 6 16 defplus 0 8 14 rich 13 4 5 start_linear media < = > defined 0 12 10 defplus 0 10 12 rich 14 2 6 miy_lag_time media < = > defined 6 11 5 defplus 2 14 6 rich 13 2 7 sn_ratio media < = > defined 8 14 0 defplus 13 9 0 rich 3 13 6 max_od_time_emg media < = > defined 0 3 19 defplus 0 3 19 rich 12 5 5 lag_time media < = > defined 7 15 0 defplus 3 19 0 rich 7 12 3 double_time media < = > defined 0 4 18 defplus 0 2 20 rich 2 12 8 threshold media < = > defined 19 3 0 defplus 19 3 0 rich 9 11 2 linear_slope media < = > defined 19 3 0 defplus 19 3 0 rich 10 10 2 global_max_od_time media < = > defined 7 14 1 defplus 2 17 3 rich 6 13 3 global_max_od media < = > defined 10 12 0 defplus 14 8 0 rich 5 10 7 ============================================================ Strain tables (comparison with nutrient vs without nutrient) m+ < m, m+ = m, m+ > m ============================================================ max_od_emg strain < = > knockout 2 19 1 wildtype 1 21 0 dur_linear strain < = > knockout 0 19 3 wildtype 0 21 1 end_linear strain < = > knockout 0 17 5 wildtype 0 15 7 start_linear strain < = > knockout 0 18 4 wildtype 0 19 3 miy_lag_time strain < = > knockout 1 17 4 wildtype 0 19 3 sn_ratio strain < = > knockout 0 22 0 wildtype 0 22 0 max_od_time_emg strain < = > knockout 1 18 3 wildtype 0 10 12 lag_time strain < = > knockout 0 22 0 wildtype 5 17 0 double_time strain < = > knockout 0 17 5 wildtype 0 6 16 threshold strain < = > knockout 4 18 0 wildtype 18 4 0 linear_slope strain < = > knockout 4 18 0 wildtype 18 4 0 global_max_od_time strain < = > knockout 1 20 1 wildtype 9 13 0 global_max_od strain < = > knockout 4 17 1 wildtype 9 13 0 ============================================================ Delta-delta tables (four way comparison) delta_k < delta_w, delta_k = delta_w, delta_k > delta_w ============================================================ max_od_emg < = > 1 21 0 ['YDR035W/C00108:nature-loop1-expt001-plate006'] dur_linear < = > 0 22 0 [] end_linear < = > 0 19 3 ['YER090W/C00108:nature-loop3-expt001-plate004', 'YER090W/C00108/C00166:nature-loop3-expt005-plate005', 'YGL026C/C00108/C00166:nature-loop3-expt005-plate006'] start_linear < = > 0 20 2 ['YER090W/C00108:nature-loop3-expt001-plate004', 'YGL026C/C00108/C00166:nature-loop3-expt005-plate006'] miy_lag_time < = > 0 20 2 ['YER090W/C00108/C00166:nature-loop3-expt005-plate005', 'YGL026C/C00108/C00166:nature-loop3-expt005-plate006'] sn_ratio < = > 0 22 0 [] max_od_time_emg < = > 2 18 2 ['YBR166C/C00108:nature-loop1-expt001-plate008', 'YDR035W/C00108:nature-loop3-expt001-plate006', 'YER090W/C00108/C00166:nature-loop3-expt005-plate005', 'YGL026C/C00108/C00166:nature-loop3-expt005-plate006'] lag_time < = > 0 22 0 [] double_time < = > 0 20 2 ['YER090W/C00108:nature-loop3-expt001-plate004', 'YDR007W/C00108/C00166:nature-loop3-expt005-plate002'] threshold < = > 0 19 3 ['YKL211C/C00108:nature-loop1-expt001-plate002', 'YBR166C/C00108:nature-loop3-expt001-plate008', 'YDR354W/C00108/C00166:nature-loop3-expt005-plate004'] linear_slope < = > 0 18 4 ['YKL211C/C00108:nature-loop1-expt001-plate002', 'YDR354W/C00108:nature-loop1-expt001-plate005', 'YBR166C/C00108:nature-loop3-expt001-plate008', 'YDR354W/C00108/C00166:nature-loop3-expt005-plate004'] global_max_od_time < = > 0 21 1 ['YER090W/C00108/C00166:nature-loop3-expt005-plate005'] global_max_od < = > 1 20 1 ['YDR035W/C00108:nature-loop1-expt001-plate006', 'YBR166C/C00108:nature-loop3-expt001-plate008']