====================================================== Media tables (comparison of knockout with wildtype) k < w, k = w, k > w ====================================================== max_od_emg media < = > defined 14 6 2 defplus 13 7 2 rich 8 4 10 dur_linear media < = > defined 4 8 10 defplus 4 4 14 rich 2 11 9 end_linear media < = > defined 3 1 18 defplus 2 1 19 rich 13 2 7 start_linear media < = > defined 2 3 17 defplus 1 3 18 rich 13 3 6 miy_lag_time media < = > defined 13 1 8 defplus 10 0 12 rich 15 0 7 sn_ratio media < = > defined 13 8 1 defplus 15 6 1 rich 4 10 8 max_od_time_emg media < = > defined 2 0 20 defplus 1 0 21 rich 11 4 7 lag_time media < = > defined 6 14 2 defplus 1 21 0 rich 5 14 3 double_time media < = > defined 1 0 21 defplus 1 0 21 rich 5 5 12 threshold media < = > defined 21 0 1 defplus 20 0 2 rich 14 4 4 linear_slope media < = > defined 21 0 1 defplus 20 0 2 rich 13 5 4 global_max_od_time media < = > defined 9 10 3 defplus 4 10 8 rich 8 9 5 global_max_od media < = > defined 16 5 1 defplus 17 4 1 rich 5 10 7 ============================================================ Strain tables (comparison with nutrient vs without nutrient) m+ < m, m+ = m, m+ > m ============================================================ max_od_emg strain < = > knockout 6 15 1 wildtype 4 18 0 dur_linear strain < = > knockout 1 17 4 wildtype 1 20 1 end_linear strain < = > knockout 2 13 7 wildtype 5 9 8 start_linear strain < = > knockout 1 15 6 wildtype 3 13 6 miy_lag_time strain < = > knockout 2 16 4 wildtype 2 16 4 sn_ratio strain < = > knockout 0 22 0 wildtype 0 22 0 max_od_time_emg strain < = > knockout 1 18 3 wildtype 2 4 16 lag_time strain < = > knockout 0 22 0 wildtype 4 18 0 double_time strain < = > knockout 0 14 8 wildtype 3 0 19 threshold strain < = > knockout 8 14 0 wildtype 21 0 1 linear_slope strain < = > knockout 8 14 0 wildtype 21 0 1 global_max_od_time strain < = > knockout 2 17 3 wildtype 6 16 0 global_max_od strain < = > knockout 6 15 1 wildtype 19 3 0 ============================================================ Delta-delta tables (four way comparison) delta_k < delta_w, delta_k = delta_w, delta_k > delta_w ============================================================ max_od_emg < = > 2 19 1 ['YNL316C/C00108:nature-loop1-expt001-plate001', 'YDR035W/C00108:nature-loop1-expt001-plate006', 'YBR166C/C00108:nature-loop3-expt001-plate008'] dur_linear < = > 1 17 4 ['YDR007W/C00108:nature-loop1-expt001-plate007', 'YGL026C/C00108:nature-loop3-expt001-plate003', 'YBR166C/C00108:nature-loop3-expt001-plate008', 'YER090W/C00108/C00166:nature-loop3-expt005-plate005', 'YGL026C/C00108/C00166:nature-loop3-expt005-plate006'] end_linear < = > 6 4 12 ['YNL316C/C00108:nature-loop1-expt001-plate001', 'YKL211C/C00108:nature-loop1-expt001-plate002', 'YER090W/C00108:nature-loop1-expt001-plate004', 'YDR007W/C00108:nature-loop1-expt001-plate007', 'YNL316C/C00108:nature-loop3-expt001-plate001', 'YKL211C/C00108:nature-loop3-expt001-plate002', 'YGL026C/C00108:nature-loop3-expt001-plate003', 'YER090W/C00108:nature-loop3-expt001-plate004', 'YDR354W/C00108:nature-loop3-expt001-plate005', 'YDR035W/C00108:nature-loop3-expt001-plate006', 'YDR007W/C00108:nature-loop3-expt001-plate007', 'YBR166C/C00108:nature-loop3-expt001-plate008', 'YDR035W/C00108/C00166:nature-loop3-expt003-plate006', 'YDR007W/C00108/C00166:nature-loop3-expt005-plate002', 'YDR354W/C00108/C00166:nature-loop3-expt005-plate004', 'YER090W/C00108/C00166:nature-loop3-expt005-plate005', 'YGL026C/C00108/C00166:nature-loop3-expt005-plate006', 'YKL211C/C00108/C00166:nature-loop3-expt005-plate007'] start_linear < = > 5 7 10 ['YNL316C/C00108:nature-loop1-expt001-plate001', 'YER090W/C00108:nature-loop1-expt001-plate004', 'YDR354W/C00108:nature-loop1-expt001-plate005', 'YDR007W/C00108:nature-loop1-expt001-plate007', 'YKL211C/C00108:nature-loop3-expt001-plate002', 'YGL026C/C00108:nature-loop3-expt001-plate003', 'YER090W/C00108:nature-loop3-expt001-plate004', 'YDR354W/C00108:nature-loop3-expt001-plate005', 'YDR007W/C00108:nature-loop3-expt001-plate007', 'YDR035W/C00108/C00166:nature-loop3-expt003-plate006', 'YDR007W/C00108/C00166:nature-loop3-expt005-plate002', 'YDR354W/C00108/C00166:nature-loop3-expt005-plate004', 'YER090W/C00108/C00166:nature-loop3-expt005-plate005', 'YGL026C/C00108/C00166:nature-loop3-expt005-plate006', 'YKL211C/C00108/C00166:nature-loop3-expt005-plate007'] miy_lag_time < = > 5 5 12 ['YNL316C/C00108:nature-loop1-expt001-plate001', 'YDR354W/C00108:nature-loop1-expt001-plate005', 'YDR007W/C00108:nature-loop1-expt001-plate007', 'YBR166C/C00108:nature-loop1-expt001-plate008', 'YNL316C/C00108:nature-loop3-expt001-plate001', 'YKL211C/C00108:nature-loop3-expt001-plate002', 'YGL026C/C00108:nature-loop3-expt001-plate003', 'YER090W/C00108:nature-loop3-expt001-plate004', 'YDR354W/C00108:nature-loop3-expt001-plate005', 'YDR035W/C00108:nature-loop3-expt001-plate006', 'YDR007W/C00108:nature-loop3-expt001-plate007', 'YBR166C/C00108:nature-loop3-expt001-plate008', 'YDR007W/C00108/C00166:nature-loop3-expt005-plate002', 'YDR354W/C00108/C00166:nature-loop3-expt005-plate004', 'YER090W/C00108/C00166:nature-loop3-expt005-plate005', 'YGL026C/C00108/C00166:nature-loop3-expt005-plate006', 'YKL211C/C00108/C00166:nature-loop3-expt005-plate007'] sn_ratio < = > 2 20 0 ['YNL316C/C00108:nature-loop1-expt001-plate001', 'YKL211C/C00108:nature-loop3-expt001-plate002'] max_od_time_emg < = > 8 7 7 ['YKL211C/C00108:nature-loop1-expt001-plate002', 'YGL026C/C00108:nature-loop1-expt001-plate003', 'YDR354W/C00108:nature-loop1-expt001-plate005', 'YDR007W/C00108:nature-loop1-expt001-plate007', 'YBR166C/C00108:nature-loop1-expt001-plate008', 'YKL211C/C00108:nature-loop3-expt001-plate002', 'YDR354W/C00108:nature-loop3-expt001-plate005', 'YDR035W/C00108:nature-loop3-expt001-plate006', 'YDR007W/C00108:nature-loop3-expt001-plate007', 'YBR166C/C00108:nature-loop3-expt001-plate008', 'YDR007W/C00108/C00166:nature-loop3-expt005-plate002', 'YDR354W/C00108/C00166:nature-loop3-expt005-plate004', 'YER090W/C00108/C00166:nature-loop3-expt005-plate005', 'YGL026C/C00108/C00166:nature-loop3-expt005-plate006', 'YKL211C/C00108/C00166:nature-loop3-expt005-plate007'] lag_time < = > 1 18 3 ['YNL316C/C00108:nature-loop1-expt001-plate001', 'YKL211C/C00108:nature-loop1-expt001-plate002', 'YDR354W/C00108:nature-loop1-expt001-plate005', 'YNL316C/C00108:nature-loop3-expt001-plate001'] double_time < = > 9 2 11 ['YNL316C/C00108:nature-loop1-expt001-plate001', 'YKL211C/C00108:nature-loop1-expt001-plate002', 'YGL026C/C00108:nature-loop1-expt001-plate003', 'YER090W/C00108:nature-loop1-expt001-plate004', 'YDR354W/C00108:nature-loop1-expt001-plate005', 'YDR007W/C00108:nature-loop1-expt001-plate007', 'YBR166C/C00108:nature-loop1-expt001-plate008', 'YNL316C/C00108:nature-loop3-expt001-plate001', 'YKL211C/C00108:nature-loop3-expt001-plate002', 'YGL026C/C00108:nature-loop3-expt001-plate003', 'YER090W/C00108:nature-loop3-expt001-plate004', 'YDR354W/C00108:nature-loop3-expt001-plate005', 'YDR035W/C00108:nature-loop3-expt001-plate006', 'YDR007W/C00108:nature-loop3-expt001-plate007', 'YBR166C/C00108:nature-loop3-expt001-plate008', 'YDR035W/C00108/C00166:nature-loop3-expt003-plate006', 'YDR007W/C00108/C00166:nature-loop3-expt005-plate002', 'YDR354W/C00108/C00166:nature-loop3-expt005-plate004', 'YER090W/C00108/C00166:nature-loop3-expt005-plate005', 'YKL211C/C00108/C00166:nature-loop3-expt005-plate007'] threshold < = > 0 8 14 ['YKL211C/C00108:nature-loop1-expt001-plate002', 'YDR354W/C00108:nature-loop1-expt001-plate005', 'YDR035W/C00108:nature-loop1-expt001-plate006', 'YBR166C/C00108:nature-loop1-expt001-plate008', 'YNL316C/C00108:nature-loop3-expt001-plate001', 'YKL211C/C00108:nature-loop3-expt001-plate002', 'YGL026C/C00108:nature-loop3-expt001-plate003', 'YDR354W/C00108:nature-loop3-expt001-plate005', 'YDR035W/C00108:nature-loop3-expt001-plate006', 'YDR007W/C00108:nature-loop3-expt001-plate007', 'YBR166C/C00108:nature-loop3-expt001-plate008', 'YDR354W/C00108/C00166:nature-loop3-expt005-plate004', 'YGL026C/C00108/C00166:nature-loop3-expt005-plate006', 'YKL211C/C00108/C00166:nature-loop3-expt005-plate007'] linear_slope < = > 0 8 14 ['YKL211C/C00108:nature-loop1-expt001-plate002', 'YDR354W/C00108:nature-loop1-expt001-plate005', 'YDR035W/C00108:nature-loop1-expt001-plate006', 'YBR166C/C00108:nature-loop1-expt001-plate008', 'YNL316C/C00108:nature-loop3-expt001-plate001', 'YKL211C/C00108:nature-loop3-expt001-plate002', 'YGL026C/C00108:nature-loop3-expt001-plate003', 'YDR354W/C00108:nature-loop3-expt001-plate005', 'YDR035W/C00108:nature-loop3-expt001-plate006', 'YDR007W/C00108:nature-loop3-expt001-plate007', 'YBR166C/C00108:nature-loop3-expt001-plate008', 'YDR354W/C00108/C00166:nature-loop3-expt005-plate004', 'YGL026C/C00108/C00166:nature-loop3-expt005-plate006', 'YKL211C/C00108/C00166:nature-loop3-expt005-plate007'] global_max_od_time < = > 3 9 10 ['YNL316C/C00108:nature-loop1-expt001-plate001', 'YDR035W/C00108:nature-loop1-expt001-plate006', 'YDR007W/C00108:nature-loop1-expt001-plate007', 'YGL026C/C00108:nature-loop3-expt001-plate003', 'YER090W/C00108:nature-loop3-expt001-plate004', 'YDR354W/C00108:nature-loop3-expt001-plate005', 'YDR035W/C00108:nature-loop3-expt001-plate006', 'YBR166C/C00108:nature-loop3-expt001-plate008', 'YDR007W/C00108/C00166:nature-loop3-expt005-plate002', 'YDR354W/C00108/C00166:nature-loop3-expt005-plate004', 'YER090W/C00108/C00166:nature-loop3-expt005-plate005', 'YGL026C/C00108/C00166:nature-loop3-expt005-plate006', 'YKL211C/C00108/C00166:nature-loop3-expt005-plate007'] global_max_od < = > 1 19 2 ['YNL316C/C00108:nature-loop1-expt001-plate001', 'YDR354W/C00108:nature-loop3-expt001-plate005', 'YBR166C/C00108:nature-loop3-expt001-plate008']