====================================================== Media tables (comparison of knockout with wildtype) k < w, k = w, k > w ====================================================== max_od_emg media < = > defined 5 10 1 defplus 6 9 1 rich 8 5 3 dur_linear media < = > defined 0 13 3 defplus 0 8 8 rich 3 11 2 end_linear media < = > defined 0 5 11 defplus 0 4 12 rich 9 6 1 start_linear media < = > defined 0 6 10 defplus 0 4 12 rich 9 5 2 miy_lag_time media < = > defined 2 8 6 defplus 1 9 6 rich 9 4 3 sn_ratio media < = > defined 5 10 1 defplus 6 9 1 rich 5 8 3 max_od_time_emg media < = > defined 0 4 12 defplus 0 2 14 rich 7 7 2 lag_time media < = > defined 4 10 2 defplus 2 13 1 rich 6 8 2 double_time media < = > defined 0 4 12 defplus 0 4 12 rich 1 12 3 threshold media < = > defined 9 6 1 defplus 12 4 0 rich 3 11 2 linear_slope media < = > defined 9 6 1 defplus 12 4 0 rich 3 11 2 global_max_od_time media < = > defined 1 10 5 defplus 3 12 1 rich 6 6 4 global_max_od media < = > defined 7 8 1 defplus 6 9 1 rich 6 8 2 ============================================================ Strain tables (comparison with nutrient vs without nutrient) m+ < m, m+ = m, m+ > m ============================================================ max_od_emg strain < = > knockout 1 14 1 wildtype 1 15 0 dur_linear strain < = > knockout 0 13 3 wildtype 0 16 0 end_linear strain < = > knockout 1 12 3 wildtype 0 13 3 start_linear strain < = > knockout 1 12 3 wildtype 0 12 4 miy_lag_time strain < = > knockout 0 14 2 wildtype 0 13 3 sn_ratio strain < = > knockout 0 15 1 wildtype 0 16 0 max_od_time_emg strain < = > knockout 0 13 3 wildtype 0 13 3 lag_time strain < = > knockout 0 16 0 wildtype 0 16 0 double_time strain < = > knockout 1 11 4 wildtype 0 14 2 threshold strain < = > knockout 3 13 0 wildtype 4 12 0 linear_slope strain < = > knockout 3 13 0 wildtype 4 12 0 global_max_od_time strain < = > knockout 2 13 1 wildtype 2 14 0 global_max_od strain < = > knockout 2 13 1 wildtype 4 12 0 ============================================================ Delta-delta tables (four way comparison) delta_k < delta_w, delta_k = delta_w, delta_k > delta_w ============================================================ max_od_emg < = > 0 15 1 ['YNL316C/C00166:nature-loop3-expt006-plate007'] dur_linear < = > 0 16 0 [] end_linear < = > 1 12 3 ['YER090W/C00166:nature-loop2-expt001-plate007', 'YDR007W/C00166:nature-loop3-expt004-plate002', 'YER090W/C00108/C00166:nature-loop3-expt005-plate005', 'YGL026C/C00108/C00166:nature-loop3-expt005-plate006'] start_linear < = > 1 14 1 ['YDR007W/C00166:nature-loop3-expt004-plate002', 'YGL026C/C00108/C00166:nature-loop3-expt005-plate006'] miy_lag_time < = > 0 14 2 ['YER090W/C00108/C00166:nature-loop3-expt005-plate005', 'YGL026C/C00108/C00166:nature-loop3-expt005-plate006'] sn_ratio < = > 0 16 0 [] max_od_time_emg < = > 0 13 3 ['YER090W/C00166:nature-loop2-expt001-plate007', 'YER090W/C00108/C00166:nature-loop3-expt005-plate005', 'YGL026C/C00108/C00166:nature-loop3-expt005-plate006'] lag_time < = > 0 16 0 [] double_time < = > 0 14 2 ['YER090W/C00166:nature-loop2-expt001-plate007', 'YDR007W/C00108/C00166:nature-loop3-expt005-plate002'] threshold < = > 1 14 1 ['YER090W/C00166:nature-loop2-expt001-plate007', 'YDR354W/C00108/C00166:nature-loop3-expt005-plate004'] linear_slope < = > 1 14 1 ['YER090W/C00166:nature-loop2-expt001-plate007', 'YDR354W/C00108/C00166:nature-loop3-expt005-plate004'] global_max_od_time < = > 2 13 1 ['YDR007W/C00166:nature-loop3-expt004-plate002', 'YER090W/C00108/C00166:nature-loop3-expt005-plate005', 'YNL316C/C00166:nature-loop3-expt006-plate007'] global_max_od < = > 0 15 1 ['YNL316C/C00166:nature-loop3-expt006-plate007']