====================================================== Media tables (comparison of knockout with wildtype) k < w, k = w, k > w ====================================================== max_od_emg media < = > defined 8 5 3 defplus 6 6 4 rich 9 2 5 dur_linear media < = > defined 2 7 7 defplus 1 1 14 rich 4 5 7 end_linear media < = > defined 3 1 12 defplus 1 1 14 rich 8 3 5 start_linear media < = > defined 3 1 12 defplus 1 1 14 rich 10 4 2 miy_lag_time media < = > defined 5 2 9 defplus 3 1 12 rich 11 2 3 sn_ratio media < = > defined 9 5 2 defplus 7 6 3 rich 5 7 4 max_od_time_emg media < = > defined 3 0 13 defplus 1 0 15 rich 8 5 3 lag_time media < = > defined 3 11 2 defplus 1 12 3 rich 7 8 1 double_time media < = > defined 2 0 14 defplus 2 0 14 rich 5 5 6 threshold media < = > defined 13 0 3 defplus 13 0 3 rich 6 6 4 linear_slope media < = > defined 13 0 3 defplus 13 0 3 rich 5 6 5 global_max_od_time media < = > defined 5 3 8 defplus 4 6 6 rich 5 7 4 global_max_od media < = > defined 10 4 2 defplus 8 4 4 rich 10 2 4 ============================================================ Strain tables (comparison with nutrient vs without nutrient) m+ < m, m+ = m, m+ > m ============================================================ max_od_emg strain < = > knockout 1 14 1 wildtype 5 11 0 dur_linear strain < = > knockout 1 11 4 wildtype 2 14 0 end_linear strain < = > knockout 3 8 5 wildtype 3 9 4 start_linear strain < = > knockout 2 10 4 wildtype 2 7 7 miy_lag_time strain < = > knockout 1 12 3 wildtype 0 11 5 sn_ratio strain < = > knockout 0 15 1 wildtype 0 16 0 max_od_time_emg strain < = > knockout 1 11 4 wildtype 1 11 4 lag_time strain < = > knockout 0 16 0 wildtype 0 16 0 double_time strain < = > knockout 1 11 4 wildtype 2 10 4 threshold strain < = > knockout 5 11 0 wildtype 5 10 1 linear_slope strain < = > knockout 5 11 0 wildtype 5 10 1 global_max_od_time strain < = > knockout 2 12 2 wildtype 3 11 2 global_max_od strain < = > knockout 2 13 1 wildtype 6 10 0 ============================================================ Delta-delta tables (four way comparison) delta_k < delta_w, delta_k = delta_w, delta_k > delta_w ============================================================ max_od_emg < = > 1 14 1 ['YKL211C/C00166:nature-loop3-expt004-plate007', 'YNL316C/C00166:nature-loop3-expt006-plate007'] dur_linear < = > 0 12 4 ['YER090W/C00166:nature-loop2-expt001-plate007', 'YER090W/C00108/C00166:nature-loop3-expt005-plate005', 'YGL026C/C00108/C00166:nature-loop3-expt005-plate006', 'YNL316C/C00166:nature-loop3-expt006-plate007'] end_linear < = > 4 5 7 ['YER090W/C00166:nature-loop2-expt001-plate007', 'YDR035W/C00108/C00166:nature-loop3-expt003-plate006', 'YDR007W/C00166:nature-loop3-expt004-plate002', 'YDR354W/C00166:nature-loop3-expt004-plate004', 'YER090W/C00166:nature-loop3-expt004-plate005', 'YDR007W/C00108/C00166:nature-loop3-expt005-plate002', 'YDR354W/C00108/C00166:nature-loop3-expt005-plate004', 'YER090W/C00108/C00166:nature-loop3-expt005-plate005', 'YGL026C/C00108/C00166:nature-loop3-expt005-plate006', 'YKL211C/C00108/C00166:nature-loop3-expt005-plate007', 'YNL316C/C00166:nature-loop3-expt006-plate007'] start_linear < = > 5 3 8 ['YER090W/C00166:nature-loop2-expt001-plate007', 'YDR035W/C00166:nature-loop3-expt002-plate003', 'YDR035W/C00108/C00166:nature-loop3-expt003-plate006', 'YDR007W/C00166:nature-loop3-expt004-plate002', 'YDR354W/C00166:nature-loop3-expt004-plate004', 'YER090W/C00166:nature-loop3-expt004-plate005', 'YKL211C/C00166:nature-loop3-expt004-plate007', 'YDR007W/C00108/C00166:nature-loop3-expt005-plate002', 'YDR354W/C00108/C00166:nature-loop3-expt005-plate004', 'YER090W/C00108/C00166:nature-loop3-expt005-plate005', 'YGL026C/C00108/C00166:nature-loop3-expt005-plate006', 'YKL211C/C00108/C00166:nature-loop3-expt005-plate007', 'YNL316C/C00166:nature-loop3-expt006-plate007'] miy_lag_time < = > 2 5 9 ['YDR035W/C00166:nature-loop3-expt002-plate003', 'YDR007W/C00166:nature-loop3-expt004-plate002', 'YER090W/C00166:nature-loop3-expt004-plate005', 'YKL211C/C00166:nature-loop3-expt004-plate007', 'YBR166C/C00166:nature-loop3-expt005-plate001', 'YDR007W/C00108/C00166:nature-loop3-expt005-plate002', 'YDR354W/C00108/C00166:nature-loop3-expt005-plate004', 'YER090W/C00108/C00166:nature-loop3-expt005-plate005', 'YGL026C/C00108/C00166:nature-loop3-expt005-plate006', 'YKL211C/C00108/C00166:nature-loop3-expt005-plate007', 'YNL316C/C00166:nature-loop3-expt006-plate007'] sn_ratio < = > 0 14 2 ['YDR354W/C00166:nature-loop3-expt004-plate004', 'YNL316C/C00166:nature-loop3-expt006-plate007'] max_od_time_emg < = > 3 7 6 ['YER090W/C00166:nature-loop2-expt001-plate007', 'YDR007W/C00166:nature-loop3-expt004-plate002', 'YKL211C/C00166:nature-loop3-expt004-plate007', 'YDR007W/C00108/C00166:nature-loop3-expt005-plate002', 'YDR354W/C00108/C00166:nature-loop3-expt005-plate004', 'YER090W/C00108/C00166:nature-loop3-expt005-plate005', 'YGL026C/C00108/C00166:nature-loop3-expt005-plate006', 'YKL211C/C00108/C00166:nature-loop3-expt005-plate007', 'YNL316C/C00166:nature-loop3-expt006-plate007'] lag_time < = > 1 15 0 ['YER090W/C00166:nature-loop3-expt004-plate005'] double_time < = > 5 4 7 ['YDR035W/C00166:nature-loop2-expt001-plate002', 'YER090W/C00166:nature-loop2-expt001-plate007', 'YDR035W/C00108/C00166:nature-loop3-expt003-plate006', 'YDR007W/C00166:nature-loop3-expt004-plate002', 'YER090W/C00166:nature-loop3-expt004-plate005', 'YGL026C/C00166:nature-loop3-expt004-plate006', 'YBR166C/C00166:nature-loop3-expt005-plate001', 'YDR007W/C00108/C00166:nature-loop3-expt005-plate002', 'YDR354W/C00108/C00166:nature-loop3-expt005-plate004', 'YER090W/C00108/C00166:nature-loop3-expt005-plate005', 'YKL211C/C00108/C00166:nature-loop3-expt005-plate007', 'YNL316C/C00166:nature-loop3-expt006-plate007'] threshold < = > 4 9 3 ['YER090W/C00166:nature-loop2-expt001-plate007', 'YER090W/C00166:nature-loop3-expt004-plate005', 'YKL211C/C00166:nature-loop3-expt004-plate007', 'YDR354W/C00108/C00166:nature-loop3-expt005-plate004', 'YGL026C/C00108/C00166:nature-loop3-expt005-plate006', 'YKL211C/C00108/C00166:nature-loop3-expt005-plate007', 'YNL316C/C00166:nature-loop3-expt006-plate007'] linear_slope < = > 3 10 3 ['YER090W/C00166:nature-loop2-expt001-plate007', 'YKL211C/C00166:nature-loop3-expt004-plate007', 'YDR354W/C00108/C00166:nature-loop3-expt005-plate004', 'YGL026C/C00108/C00166:nature-loop3-expt005-plate006', 'YKL211C/C00108/C00166:nature-loop3-expt005-plate007', 'YNL316C/C00166:nature-loop3-expt006-plate007'] global_max_od_time < = > 2 9 5 ['YDR007W/C00166:nature-loop3-expt004-plate002', 'YDR007W/C00108/C00166:nature-loop3-expt005-plate002', 'YDR354W/C00108/C00166:nature-loop3-expt005-plate004', 'YER090W/C00108/C00166:nature-loop3-expt005-plate005', 'YGL026C/C00108/C00166:nature-loop3-expt005-plate006', 'YKL211C/C00108/C00166:nature-loop3-expt005-plate007', 'YNL316C/C00166:nature-loop3-expt006-plate007'] global_max_od < = > 0 14 2 ['YDR035W/C00166:nature-loop3-expt002-plate003', 'YNL316C/C00166:nature-loop3-expt006-plate007']