====================================================== Media tables (comparison of knockout with wildtype) k < w, k = w, k > w ====================================================== max_od_emg media < = > defined 2 0 0 defplus 1 0 1 rich 1 0 1 dur_linear media < = > defined 0 0 2 defplus 0 0 2 rich 0 1 1 end_linear media < = > defined 0 0 2 defplus 0 0 2 rich 0 1 1 start_linear media < = > defined 0 0 2 defplus 0 1 1 rich 0 1 1 miy_lag_time media < = > defined 1 0 1 defplus 1 0 1 rich 0 1 1 sn_ratio media < = > defined 2 0 0 defplus 1 1 0 rich 1 1 0 max_od_time_emg media < = > defined 0 0 2 defplus 0 0 2 rich 0 1 1 lag_time media < = > defined 1 1 0 defplus 0 1 1 rich 1 1 0 double_time media < = > defined 0 0 2 defplus 0 0 2 rich 0 1 1 threshold media < = > defined 2 0 0 defplus 1 0 1 rich 1 1 0 linear_slope media < = > defined 2 0 0 defplus 1 0 1 rich 1 1 0 global_max_od_time media < = > defined 0 2 0 defplus 0 2 0 rich 0 2 0 global_max_od media < = > defined 2 0 0 defplus 1 0 1 rich 2 0 0 ============================================================ Strain tables (comparison with nutrient vs without nutrient) m+ < m, m+ = m, m+ > m ============================================================ max_od_emg strain < = > knockout 0 2 0 wildtype 0 2 0 dur_linear strain < = > knockout 0 2 0 wildtype 0 2 0 end_linear strain < = > knockout 0 2 0 wildtype 0 2 0 start_linear strain < = > knockout 0 2 0 wildtype 0 2 0 miy_lag_time strain < = > knockout 0 2 0 wildtype 0 2 0 sn_ratio strain < = > knockout 0 2 0 wildtype 0 2 0 max_od_time_emg strain < = > knockout 0 2 0 wildtype 0 2 0 lag_time strain < = > knockout 0 2 0 wildtype 0 2 0 double_time strain < = > knockout 0 2 0 wildtype 1 1 0 threshold strain < = > knockout 0 2 0 wildtype 0 1 1 linear_slope strain < = > knockout 0 2 0 wildtype 0 1 1 global_max_od_time strain < = > knockout 0 2 0 wildtype 0 2 0 global_max_od strain < = > knockout 0 2 0 wildtype 0 2 0 ============================================================ Delta-delta tables (four way comparison) delta_k < delta_w, delta_k = delta_w, delta_k > delta_w ============================================================ max_od_emg < = > 0 2 0 [] dur_linear < = > 1 1 0 ['YHR163W/C00314:mar07-trial2-expt001-plate004'] end_linear < = > 0 2 0 [] start_linear < = > 1 0 1 ['YHR163W/C00314:mar07-trial2-expt001-plate004', 'YIL033C/C00314:mar07-trial5-expt001-plate001'] miy_lag_time < = > 0 0 2 ['YHR163W/C00314:mar07-trial2-expt001-plate004', 'YIL033C/C00314:mar07-trial5-expt001-plate001'] sn_ratio < = > 0 2 0 [] max_od_time_emg < = > 1 1 0 ['YHR163W/C00314:mar07-trial2-expt001-plate004'] lag_time < = > 0 2 0 [] double_time < = > 1 1 0 ['YHR163W/C00314:mar07-trial2-expt001-plate004'] threshold < = > 0 2 0 [] linear_slope < = > 0 2 0 [] global_max_od_time < = > 0 2 0 [] global_max_od < = > 0 2 0 []