====================================================== Media tables (comparison of knockout with wildtype) k < w, k = w, k > w ====================================================== max_od_emg media < = > defined 0 1 4 defplus 2 2 1 rich 3 0 2 dur_linear media < = > defined 3 2 0 defplus 0 5 0 rich 2 2 1 end_linear media < = > defined 2 2 1 defplus 2 2 1 rich 3 0 2 start_linear media < = > defined 0 4 1 defplus 3 1 1 rich 3 0 2 miy_lag_time media < = > defined 0 2 3 defplus 1 3 1 rich 3 0 2 sn_ratio media < = > defined 0 3 2 defplus 1 4 0 rich 3 1 1 max_od_time_emg media < = > defined 0 0 5 defplus 1 2 2 rich 3 0 2 lag_time media < = > defined 0 4 1 defplus 0 5 0 rich 3 0 2 double_time media < = > defined 3 1 1 defplus 2 2 1 rich 1 1 3 threshold media < = > defined 0 1 4 defplus 2 2 1 rich 3 1 1 linear_slope media < = > defined 0 1 4 defplus 2 2 1 rich 3 1 1 global_max_od_time media < = > defined 3 1 1 defplus 3 1 1 rich 2 1 2 global_max_od media < = > defined 0 2 3 defplus 2 2 1 rich 3 0 2 ============================================================ Strain tables (comparison with nutrient vs without nutrient) m+ < m, m+ = m, m+ > m ============================================================ max_od_emg strain < = > knockout 2 3 0 wildtype 0 5 0 dur_linear strain < = > knockout 0 3 2 wildtype 1 4 0 end_linear strain < = > knockout 1 2 2 wildtype 0 0 5 start_linear strain < = > knockout 0 5 0 wildtype 0 0 5 miy_lag_time strain < = > knockout 0 4 1 wildtype 0 0 5 sn_ratio strain < = > knockout 0 5 0 wildtype 0 5 0 max_od_time_emg strain < = > knockout 0 5 0 wildtype 0 3 2 lag_time strain < = > knockout 0 5 0 wildtype 0 5 0 double_time strain < = > knockout 0 2 3 wildtype 1 2 2 threshold strain < = > knockout 4 1 0 wildtype 1 3 1 linear_slope strain < = > knockout 4 1 0 wildtype 1 2 2 global_max_od_time strain < = > knockout 1 2 2 wildtype 0 1 4 global_max_od strain < = > knockout 0 5 0 wildtype 1 4 0 ============================================================ Delta-delta tables (four way comparison) delta_k < delta_w, delta_k = delta_w, delta_k > delta_w ============================================================ max_od_emg < = > 0 5 0 [] dur_linear < = > 2 2 1 ['YGL026C/C00463:nature-loop3-expt003-plate003', 'YER090W/C00463:nature-loop3-expt003-plate004', 'YDR007W/C00463:nature-loop3-expt003-plate007'] end_linear < = > 1 4 0 ['YGL026C/C00463:nature-loop3-expt003-plate003'] start_linear < = > 2 3 0 ['YGL026C/C00463:nature-loop3-expt003-plate003', 'YER090W/C00463:nature-loop3-expt003-plate004'] miy_lag_time < = > 0 5 0 [] sn_ratio < = > 0 5 0 [] max_od_time_emg < = > 2 3 0 ['YGL026C/C00463:nature-loop3-expt003-plate003', 'YDR354W/C00463:nature-loop3-expt003-plate005'] lag_time < = > 0 5 0 [] double_time < = > 2 3 0 ['YGL026C/C00463:nature-loop3-expt003-plate003', 'YDR354W/C00463:nature-loop3-expt003-plate005'] threshold < = > 0 5 0 [] linear_slope < = > 0 5 0 [] global_max_od_time < = > 1 4 0 ['YER090W/C00463:nature-loop3-expt003-plate004'] global_max_od < = > 0 5 0 []