Computational biology: Data, services and software
Data
- Yeast phenotype
- Data and results from the use of phenotypic data about yeast to predict functional class of yeast ORFs.
- Guilt-by-association
- Annotated clusterings produced when evaluating the use of yeast and E. coli microarray data to show guilt-by-association.
- Predicting function from sequence
- Predicting functional class of M. tuberculosis and E. coli ORFs from sequence using machine learning and data mining. Original data, rules and predictions.
- Yeast gene function predictions
- Predicting functional class of S. cerevisiae using machine learning and data mining. Rules and predictions.
- Yeast data
- Data used in predicting functional class of S. cerevisiae using machine learning and data mining. Sequence, phenotype, expression, homology and predicted secondary structure data.
- Arabidopsis gene function predictions
- Predicting functional class of A. thaliana using machine learning and data mining. Rules and predictions.
- Arabidopsis data
- Data used in predicting functional class of A. thaliana using machine learning and data mining. Sequence, SCOP class, InterPro, expression, homology and predicted secondary structure data.
Services / Web Servers
- Prof
- Secondary Structure Prediction System
- www.GenePredictions.org
- Predictions for gene function
- HI
- Homology Induction System
Software
- Protein music
- A Java program converting DNA sequences into music. Written and maintained by Andreas Karwath
- C4.5 modifications
- Modifications to C4.5 to allow multiple labels and hierarchical classes
- PolyFARM
- Data mining software for relational data.
- ArMet
- An architecture for metabolomics
- DSC
- The DSC protein structure prediction software