Data, Services and Software

Data

Yeast phenotype

Data and results from the use of phenotypic data about yeast to predict functional class of yeast ORFs.

EXACT

An ontology of EXperiment ACTions. We propose the EXACT ontology as the basis of a method of representing biological laboratory protocols.

Guilt-by-association

Annotated clusterings produced when evaluating the use of yeast and E. coli microarray data to show guilt-by-association.

Predicting function from sequence

Predicting functional class of M. tuberculosis and E. coli ORFs from sequence using machine learning and data mining. Original data, rules and predictions.

Yeast gene function predictions

Predicting functional class of S. cerevisiae using machine learning and data mining. Rules and predictions.

Yeast data

Data used in predicting functional class of S. cerevisiae using machine learning and data mining. Sequence, phenotype, expression, homology and predicted secondary structure data.

Arabidopsis gene function predictions

Predicting functional class of A. thaliana using machine learning and data mining. Rules and predictions.

Arabidopsis data

Data used in predicting functional class of A. thaliana using machine learning and data mining. Sequence, SCOP class, InterPro, expression, homology and predicted secondary structure data.

Services / Web Servers

Prof

Secondary Structure Prediction System

www.GenePredictions.org

Predictions for gene function

HI

Homology Induction System

Software

Protein music

A Java program converting DNA sequences into music. Written and maintained by Andreas Karwath

C4.5 modifications

Modifications to C4.5 to allow multiple labels and hierarchical classes

PolyFARM

Data mining software for relational data.

ArMet

An architecture for metabolomics

DSC

The DSC protein structure prediction software

RADAR

Association mining software for relational data.